AutoCloner

Multiple sequence alignment - TraesCS7D01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G331300	chr7D	100.000	2516	0	0	1	2516	422717401	422719916	0.000000e+00	4647.0
1	TraesCS7D01G331300	chr7D	93.417	714	39	3	1811	2516	614279543	614280256	0.000000e+00	1051.0
2	TraesCS7D01G331300	chr7D	84.112	963	111	25	564	1521	633512443	633513368	0.000000e+00	893.0
3	TraesCS7D01G331300	chr7B	93.797	1596	57	17	1	1580	439859312	439860881	0.000000e+00	2361.0
4	TraesCS7D01G331300	chr7B	93.277	714	40	3	1811	2516	73335737	73336450	0.000000e+00	1046.0
5	TraesCS7D01G331300	chr7B	84.483	116	14	4	1699	1811	439863714	439863828	7.360000e-21	111.0
6	TraesCS7D01G331300	chr7B	100.000	32	0	0	1780	1811	439994003	439994034	2.700000e-05	60.2
7	TraesCS7D01G331300	chr7A	87.144	1299	112	32	395	1658	510470081	510468803	0.000000e+00	1423.0
8	TraesCS7D01G331300	chr7A	92.837	712	42	4	1813	2516	577218198	577218908	0.000000e+00	1024.0
9	TraesCS7D01G331300	chr7A	83.444	1057	119	28	562	1601	733576792	733575775	0.000000e+00	931.0
10	TraesCS7D01G331300	chr7A	89.399	632	60	5	1031	1658	510403175	510402547	0.000000e+00	789.0
11	TraesCS7D01G331300	chr5D	94.406	715	27	7	1813	2516	54941954	54942666	0.000000e+00	1086.0
12	TraesCS7D01G331300	chr5D	94.126	715	32	5	1811	2516	345033415	345032702	0.000000e+00	1079.0
13	TraesCS7D01G331300	chr3A	93.829	713	35	4	1813	2516	483245245	483244533	0.000000e+00	1064.0
14	TraesCS7D01G331300	chr2B	93.706	715	35	5	1810	2516	184906843	184906131	0.000000e+00	1062.0
15	TraesCS7D01G331300	chr5A	93.380	710	39	3	1815	2516	423733953	423734662	0.000000e+00	1044.0
16	TraesCS7D01G331300	chr5A	94.891	411	13	3	2114	2516	423736226	423736636	9.820000e-179	636.0
17	TraesCS7D01G331300	chr6B	93.017	716	40	5	1811	2516	710341064	710340349	0.000000e+00	1037.0
18	TraesCS7D01G331300	chr6A	92.567	713	43	5	1813	2516	72447503	72448214	0.000000e+00	1014.0
19	TraesCS7D01G331300	chr1A	92.535	710	45	3	1815	2516	545718356	545717647	0.000000e+00	1011.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G331300	chr7D	422717401	422719916	2515	False	4647	4647	100.0000	1	2516	1	chr7D.!!$F1	2515
1	TraesCS7D01G331300	chr7D	614279543	614280256	713	False	1051	1051	93.4170	1811	2516	1	chr7D.!!$F2	705
2	TraesCS7D01G331300	chr7D	633512443	633513368	925	False	893	893	84.1120	564	1521	1	chr7D.!!$F3	957
3	TraesCS7D01G331300	chr7B	439859312	439863828	4516	False	1236	2361	89.1400	1	1811	2	chr7B.!!$F3	1810
4	TraesCS7D01G331300	chr7B	73335737	73336450	713	False	1046	1046	93.2770	1811	2516	1	chr7B.!!$F1	705
5	TraesCS7D01G331300	chr7A	510468803	510470081	1278	True	1423	1423	87.1440	395	1658	1	chr7A.!!$R2	1263
6	TraesCS7D01G331300	chr7A	577218198	577218908	710	False	1024	1024	92.8370	1813	2516	1	chr7A.!!$F1	703
7	TraesCS7D01G331300	chr7A	733575775	733576792	1017	True	931	931	83.4440	562	1601	1	chr7A.!!$R3	1039
8	TraesCS7D01G331300	chr7A	510402547	510403175	628	True	789	789	89.3990	1031	1658	1	chr7A.!!$R1	627
9	TraesCS7D01G331300	chr5D	54941954	54942666	712	False	1086	1086	94.4060	1813	2516	1	chr5D.!!$F1	703
10	TraesCS7D01G331300	chr5D	345032702	345033415	713	True	1079	1079	94.1260	1811	2516	1	chr5D.!!$R1	705
11	TraesCS7D01G331300	chr3A	483244533	483245245	712	True	1064	1064	93.8290	1813	2516	1	chr3A.!!$R1	703
12	TraesCS7D01G331300	chr2B	184906131	184906843	712	True	1062	1062	93.7060	1810	2516	1	chr2B.!!$R1	706
13	TraesCS7D01G331300	chr5A	423733953	423736636	2683	False	840	1044	94.1355	1815	2516	2	chr5A.!!$F1	701
14	TraesCS7D01G331300	chr6B	710340349	710341064	715	True	1037	1037	93.0170	1811	2516	1	chr6B.!!$R1	705
15	TraesCS7D01G331300	chr6A	72447503	72448214	711	False	1014	1014	92.5670	1813	2516	1	chr6A.!!$F1	703
16	TraesCS7D01G331300	chr1A	545717647	545718356	709	True	1011	1011	92.5350	1815	2516	1	chr1A.!!$R1	701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
730	782	0.391263	TTACGCCACACACACACACA	60.391	50.0	0.0	0.0	0.0	3.72	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1712	4509	0.953471	TTGGCGGAACAATCTGACGG	60.953	55.0	0.0	0.0	43.57	4.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	4.393834	TGCACTCCAAAATACTGCAACTA	58.606	39.130	0.00	0.00	34.97	2.24
60	61	8.804204	TCTTTTCTAACAAAACAACCCACTTTA	58.196	29.630	0.00	0.00	0.00	1.85
65	66	9.411189	TCTAACAAAACAACCCACTTTATTACT	57.589	29.630	0.00	0.00	0.00	2.24
190	191	5.371115	TGTTTGCTTTCCTATTACAGTGC	57.629	39.130	0.00	0.00	0.00	4.40
196	197	5.887598	TGCTTTCCTATTACAGTGCATGAAT	59.112	36.000	0.00	0.00	0.00	2.57
206	216	4.511527	ACAGTGCATGAATCCAGTAAGAG	58.488	43.478	0.00	0.00	0.00	2.85
207	217	4.223700	ACAGTGCATGAATCCAGTAAGAGA	59.776	41.667	0.00	0.00	0.00	3.10
217	227	6.706270	TGAATCCAGTAAGAGAGAAAACACAC	59.294	38.462	0.00	0.00	0.00	3.82
223	233	6.092122	CAGTAAGAGAGAAAACACACACAACA	59.908	38.462	0.00	0.00	0.00	3.33
226	236	5.185454	AGAGAGAAAACACACACAACATGA	58.815	37.500	0.00	0.00	0.00	3.07
227	237	5.824624	AGAGAGAAAACACACACAACATGAT	59.175	36.000	0.00	0.00	0.00	2.45
248	258	4.340894	TGTAATCATCAAAAGCTGTCGC	57.659	40.909	0.00	0.00	0.00	5.19
258	269	3.426568	GCTGTCGCCACTGCTTCC	61.427	66.667	6.09	0.00	42.66	3.46
264	275	2.437359	GCCACTGCTTCCGCTGAT	60.437	61.111	0.00	0.00	38.34	2.90
324	335	6.456988	GGTTGTCTGAACTAATAGCAAATCGG	60.457	42.308	0.00	0.00	0.00	4.18
364	375	4.043200	GGTTGCGCCAGGTTCAGC	62.043	66.667	4.18	0.00	37.17	4.26
406	417	3.954904	AGTGAGCATAACTCTGTACGGAT	59.045	43.478	4.48	0.00	46.41	4.18
441	453	0.975040	CCCTCTCTGTGGTCTCCCTG	60.975	65.000	0.00	0.00	0.00	4.45
456	468	1.081174	TCCCTGATCTTTCTCCCCTGT	59.919	52.381	0.00	0.00	0.00	4.00
639	657	3.693085	CCTTCATAACAGCAACTGCAGAT	59.307	43.478	23.35	5.41	45.16	2.90
660	678	7.158021	CAGATATTCTCCTCCCTTGTTATCAC	58.842	42.308	0.00	0.00	0.00	3.06
720	772	0.398696	ACCAACAGGATTACGCCACA	59.601	50.000	0.00	0.00	0.00	4.17
721	773	0.802494	CCAACAGGATTACGCCACAC	59.198	55.000	0.00	0.00	0.00	3.82
722	774	1.518325	CAACAGGATTACGCCACACA	58.482	50.000	0.00	0.00	0.00	3.72
723	775	1.196808	CAACAGGATTACGCCACACAC	59.803	52.381	0.00	0.00	0.00	3.82
724	776	0.394938	ACAGGATTACGCCACACACA	59.605	50.000	0.00	0.00	0.00	3.72
725	777	0.796312	CAGGATTACGCCACACACAC	59.204	55.000	0.00	0.00	0.00	3.82
726	778	0.394938	AGGATTACGCCACACACACA	59.605	50.000	0.00	0.00	0.00	3.72
727	779	0.515564	GGATTACGCCACACACACAC	59.484	55.000	0.00	0.00	0.00	3.82
728	780	1.222300	GATTACGCCACACACACACA	58.778	50.000	0.00	0.00	0.00	3.72
729	781	0.941542	ATTACGCCACACACACACAC	59.058	50.000	0.00	0.00	0.00	3.82
730	782	0.391263	TTACGCCACACACACACACA	60.391	50.000	0.00	0.00	0.00	3.72
731	783	1.084935	TACGCCACACACACACACAC	61.085	55.000	0.00	0.00	0.00	3.82
732	784	2.394563	CGCCACACACACACACACA	61.395	57.895	0.00	0.00	0.00	3.72
733	785	1.136565	GCCACACACACACACACAC	59.863	57.895	0.00	0.00	0.00	3.82
815	867	3.146618	AGTATGAGCACGTAAACTCCG	57.853	47.619	9.23	0.00	31.65	4.63
912	965	1.152963	AAGACACCAGCACACACCC	60.153	57.895	0.00	0.00	0.00	4.61
966	1037	3.933332	GCTCAAACTACAAACCGATAGCT	59.067	43.478	0.00	0.00	0.00	3.32
967	1038	5.105473	AGCTCAAACTACAAACCGATAGCTA	60.105	40.000	0.00	0.00	34.98	3.32
968	1039	5.232414	GCTCAAACTACAAACCGATAGCTAG	59.768	44.000	0.00	0.00	0.00	3.42
969	1040	5.107133	TCAAACTACAAACCGATAGCTAGC	58.893	41.667	6.62	6.62	0.00	3.42
970	1041	4.730949	AACTACAAACCGATAGCTAGCA	57.269	40.909	18.83	3.19	0.00	3.49
971	1042	4.939052	ACTACAAACCGATAGCTAGCAT	57.061	40.909	18.83	8.43	0.00	3.79
972	1043	5.277857	ACTACAAACCGATAGCTAGCATT	57.722	39.130	18.83	2.87	0.00	3.56
973	1044	5.050490	ACTACAAACCGATAGCTAGCATTG	58.950	41.667	18.83	12.56	0.00	2.82
974	1045	3.206150	ACAAACCGATAGCTAGCATTGG	58.794	45.455	18.83	21.00	33.67	3.16
975	1046	3.118408	ACAAACCGATAGCTAGCATTGGA	60.118	43.478	27.06	7.74	32.07	3.53
980	1051	3.466836	CGATAGCTAGCATTGGAAACCA	58.533	45.455	18.83	0.00	0.00	3.67
1176	1255	2.740826	GCTAGGTCGCAACGCCAA	60.741	61.111	0.00	0.00	0.00	4.52
1300	1380	1.961394	AGTACGAGAAACTGAGGTGCA	59.039	47.619	0.00	0.00	0.00	4.57
1508	1588	2.480610	CCGCCCGTGCTATGCAATT	61.481	57.895	0.00	0.00	41.47	2.32
1521	1601	5.178061	GCTATGCAATTTGTTTAGGGCTTT	58.822	37.500	0.00	0.00	0.00	3.51
1527	1607	5.511373	GCAATTTGTTTAGGGCTTTCCTTCT	60.511	40.000	0.00	0.00	45.47	2.85
1540	1620	6.037726	GGCTTTCCTTCTTTTACACGAAAAA	58.962	36.000	0.00	0.00	36.59	1.94
1572	1655	6.973642	AGTTTTAGAGGATTGGATTGGATCA	58.026	36.000	0.00	0.00	0.00	2.92
1586	1669	7.131451	TGGATTGGATCATTAAGAATTTCCCA	58.869	34.615	0.00	0.00	0.00	4.37
1601	1779	9.699410	AAGAATTTCCCATAATGTTCATCACTA	57.301	29.630	0.00	0.00	0.00	2.74
1606	1784	8.958119	TTCCCATAATGTTCATCACTAGTAAC	57.042	34.615	0.00	0.00	0.00	2.50
1678	2152	8.798859	TTTTTGTTGGAGAAAAATTCCATCAA	57.201	26.923	11.67	11.67	45.62	2.57
1679	2153	7.784633	TTTGTTGGAGAAAAATTCCATCAAC	57.215	32.000	14.17	10.87	46.32	3.18
1682	2156	8.243961	TGTTGGAGAAAAATTCCATCAACTAA	57.756	30.769	15.20	0.00	43.87	2.24
1683	2157	8.700051	TGTTGGAGAAAAATTCCATCAACTAAA	58.300	29.630	15.20	2.00	43.87	1.85
1684	2158	9.541143	GTTGGAGAAAAATTCCATCAACTAAAA	57.459	29.630	0.00	0.00	43.87	1.52
1695	2169	9.844257	ATTCCATCAACTAAAATCTCTTAGGAG	57.156	33.333	0.00	0.00	40.73	3.69
1711	4508	2.141535	GGAGTAGTAGCATTGCTCCG	57.858	55.000	15.81	0.00	40.44	4.63
1712	4509	1.492720	GAGTAGTAGCATTGCTCCGC	58.507	55.000	15.81	7.03	40.44	5.54
1714	4511	1.067416	TAGTAGCATTGCTCCGCCG	59.933	57.895	15.81	0.00	40.44	6.46
1717	4514	3.012859	TAGCATTGCTCCGCCGTCA	62.013	57.895	15.81	0.00	40.44	4.35
1718	4515	2.906182	TAGCATTGCTCCGCCGTCAG	62.906	60.000	15.81	0.00	40.44	3.51
1725	4522	1.696832	GCTCCGCCGTCAGATTGTTC	61.697	60.000	0.00	0.00	0.00	3.18
1726	4523	1.079405	TCCGCCGTCAGATTGTTCC	60.079	57.895	0.00	0.00	0.00	3.62
1733	4530	1.234821	GTCAGATTGTTCCGCCAACA	58.765	50.000	0.00	0.00	43.68	3.33
1740	4537	1.576356	TGTTCCGCCAACAAAATTGC	58.424	45.000	0.00	0.00	42.35	3.56
1741	4538	1.134699	TGTTCCGCCAACAAAATTGCA	60.135	42.857	0.00	0.00	42.35	4.08
1770	4570	3.604875	TGTTGGGTATCTTTCGGACTC	57.395	47.619	0.00	0.00	0.00	3.36
1772	4572	3.581332	TGTTGGGTATCTTTCGGACTCTT	59.419	43.478	0.00	0.00	0.00	2.85
1773	4573	4.182339	GTTGGGTATCTTTCGGACTCTTC	58.818	47.826	0.00	0.00	0.00	2.87
1802	4602	2.224257	GGATCCTCTGCTTCTGCTAAGG	60.224	54.545	3.84	0.00	40.50	2.69
2108	4909	1.323412	CTCGGAGATGGAGGACGAAT	58.677	55.000	0.00	0.00	33.89	3.34
2169	4970	1.039856	AATGGCGCCACTCTTTTTGT	58.960	45.000	35.50	9.97	0.00	2.83
2213	5014	5.452078	TCACCTTCTTTATTTTGCCTGTG	57.548	39.130	0.00	0.00	0.00	3.66
2214	5015	3.989817	CACCTTCTTTATTTTGCCTGTGC	59.010	43.478	0.00	0.00	38.26	4.57
2340	7124	1.410737	CCAACATAGCGTCACGGTCG	61.411	60.000	4.49	0.30	38.83	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	7.601130	GGGTTGTTTTGTTAGAAAAGAAGTTGT	59.399	33.333	0.00	0.00	0.00	3.32
96	97	5.068723	GTGCTTGATTGGATGATCATTCCTT	59.931	40.000	11.63	0.00	36.05	3.36
103	104	5.355071	TGTTGTAGTGCTTGATTGGATGATC	59.645	40.000	0.00	0.00	0.00	2.92
177	178	5.130975	ACTGGATTCATGCACTGTAATAGGA	59.869	40.000	0.00	0.00	0.00	2.94
190	191	7.388776	TGTGTTTTCTCTCTTACTGGATTCATG	59.611	37.037	0.00	0.00	0.00	3.07
196	197	5.105106	TGTGTGTGTTTTCTCTCTTACTGGA	60.105	40.000	0.00	0.00	0.00	3.86
206	216	5.581605	ACATCATGTTGTGTGTGTTTTCTC	58.418	37.500	8.62	0.00	0.00	2.87
207	217	5.581126	ACATCATGTTGTGTGTGTTTTCT	57.419	34.783	8.62	0.00	0.00	2.52
226	236	4.201950	GGCGACAGCTTTTGATGATTACAT	60.202	41.667	0.00	0.00	44.37	2.29
227	237	3.126858	GGCGACAGCTTTTGATGATTACA	59.873	43.478	0.00	0.00	44.37	2.41
258	269	2.322355	AGAATGGTGGAAGATCAGCG	57.678	50.000	0.00	0.00	37.91	5.18
264	275	6.247676	TCAAATCATGAAGAATGGTGGAAGA	58.752	36.000	0.00	0.00	36.86	2.87
324	335	1.370778	GCAAACGGCGGGTTGTAAC	60.371	57.895	21.42	3.46	39.30	2.50
364	375	0.879765	CCAGAAGCTTTGGCACTGAG	59.120	55.000	12.40	1.44	42.70	3.35
406	417	2.979678	AGAGGGGTCTGTAAGCTTCAAA	59.020	45.455	0.00	0.00	0.00	2.69
441	453	7.394641	ACAATAAGAAAACAGGGGAGAAAGATC	59.605	37.037	0.00	0.00	0.00	2.75
456	468	3.333680	AGGAGAGGGCCACAATAAGAAAA	59.666	43.478	6.18	0.00	0.00	2.29
495	508	8.885040	GCGATTAGACGTGCCAATATTTGGTC	62.885	46.154	8.01	1.87	42.94	4.02
518	531	4.394795	CAAAGAAACGGTCAGATTTAGCG	58.605	43.478	0.00	0.00	43.15	4.26
639	657	4.344102	CGGTGATAACAAGGGAGGAGAATA	59.656	45.833	0.00	0.00	0.00	1.75
660	678	3.543494	CAGCGTGCTGAATTATTTTTCGG	59.457	43.478	16.69	0.00	46.30	4.30
720	772	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
721	773	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
722	774	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
723	775	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
724	776	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
725	777	0.179227	CGTGTGTGTGTGTGTGTGTG	60.179	55.000	0.00	0.00	0.00	3.82
726	778	0.601576	ACGTGTGTGTGTGTGTGTGT	60.602	50.000	0.00	0.00	0.00	3.72
727	779	0.179227	CACGTGTGTGTGTGTGTGTG	60.179	55.000	7.58	0.00	41.34	3.82
728	780	2.158300	CACGTGTGTGTGTGTGTGT	58.842	52.632	7.58	0.00	41.34	3.72
751	803	0.179260	CATGCACGTACCGTTCGTTG	60.179	55.000	0.00	0.00	38.32	4.10
815	867	2.279120	CGACGAGCTGGCCATCTC	60.279	66.667	23.98	23.98	0.00	2.75
872	924	2.544267	GTCTGACTGGGTTGTCTTTTCG	59.456	50.000	0.00	0.00	37.79	3.46
912	965	4.158764	CGGGCTTCCTAGAATCCTATAGTG	59.841	50.000	0.00	0.00	0.00	2.74
966	1037	1.164411	CACGCTGGTTTCCAATGCTA	58.836	50.000	0.00	0.00	30.80	3.49
967	1038	0.537143	TCACGCTGGTTTCCAATGCT	60.537	50.000	0.00	0.00	30.80	3.79
968	1039	0.527565	ATCACGCTGGTTTCCAATGC	59.472	50.000	0.00	0.00	30.80	3.56
969	1040	2.728846	CGAATCACGCTGGTTTCCAATG	60.729	50.000	0.00	0.00	30.80	2.82
970	1041	1.468520	CGAATCACGCTGGTTTCCAAT	59.531	47.619	0.00	0.00	30.80	3.16
971	1042	0.871722	CGAATCACGCTGGTTTCCAA	59.128	50.000	0.00	0.00	30.80	3.53
972	1043	0.953471	CCGAATCACGCTGGTTTCCA	60.953	55.000	0.00	0.00	41.07	3.53
973	1044	0.953960	ACCGAATCACGCTGGTTTCC	60.954	55.000	0.00	0.00	41.07	3.13
974	1045	0.442699	GACCGAATCACGCTGGTTTC	59.557	55.000	0.00	0.00	41.07	2.78
975	1046	1.289109	CGACCGAATCACGCTGGTTT	61.289	55.000	0.00	0.00	41.07	3.27
1026	1105	4.660938	AAGCCCACCGGAGCAACC	62.661	66.667	9.46	0.00	0.00	3.77
1176	1255	1.202330	CCTCTGGATCTTGCAGGAGT	58.798	55.000	4.35	0.00	36.40	3.85
1272	1352	5.503662	TCAGTTTCTCGTACTTGTACACA	57.496	39.130	10.91	0.00	0.00	3.72
1521	1601	8.726988	CCTATGATTTTTCGTGTAAAAGAAGGA	58.273	33.333	0.00	0.00	38.29	3.36
1540	1620	7.937700	TCCAATCCTCTAAAACTCCTATGAT	57.062	36.000	0.00	0.00	0.00	2.45
1660	2134	9.927668	GATTTTAGTTGATGGAATTTTTCTCCA	57.072	29.630	0.00	0.00	46.86	3.86
1672	2146	9.757227	CTACTCCTAAGAGATTTTAGTTGATGG	57.243	37.037	0.00	0.00	43.39	3.51
1676	2150	9.738832	GCTACTACTCCTAAGAGATTTTAGTTG	57.261	37.037	0.00	0.00	43.39	3.16
1677	2151	9.476928	TGCTACTACTCCTAAGAGATTTTAGTT	57.523	33.333	0.00	0.00	43.39	2.24
1678	2152	9.649316	ATGCTACTACTCCTAAGAGATTTTAGT	57.351	33.333	0.00	0.00	43.39	2.24
1682	2156	7.070571	AGCAATGCTACTACTCCTAAGAGATTT	59.929	37.037	5.69	0.00	38.80	2.17
1683	2157	6.553100	AGCAATGCTACTACTCCTAAGAGATT	59.447	38.462	5.69	0.00	38.80	2.40
1684	2158	6.074648	AGCAATGCTACTACTCCTAAGAGAT	58.925	40.000	5.69	0.00	38.80	2.75
1685	2159	5.450453	AGCAATGCTACTACTCCTAAGAGA	58.550	41.667	5.69	0.00	38.80	3.10
1688	2162	4.557695	CGGAGCAATGCTACTACTCCTAAG	60.558	50.000	16.28	0.00	43.92	2.18
1689	2163	3.318275	CGGAGCAATGCTACTACTCCTAA	59.682	47.826	16.28	0.00	43.92	2.69
1690	2164	2.885266	CGGAGCAATGCTACTACTCCTA	59.115	50.000	16.28	0.00	43.92	2.94
1692	2166	2.141535	CGGAGCAATGCTACTACTCC	57.858	55.000	16.28	7.36	39.88	3.85
1711	4508	2.750888	GGCGGAACAATCTGACGGC	61.751	63.158	0.00	0.00	42.56	5.68
1712	4509	0.953471	TTGGCGGAACAATCTGACGG	60.953	55.000	0.00	0.00	43.57	4.79
1714	4511	1.234821	TGTTGGCGGAACAATCTGAC	58.765	50.000	0.00	0.00	41.80	3.51
1725	4522	1.510776	ACATGCAATTTTGTTGGCGG	58.489	45.000	0.00	0.00	0.00	6.13
1726	4523	3.605743	AAACATGCAATTTTGTTGGCG	57.394	38.095	4.26	0.00	36.26	5.69
1749	4549	3.581332	AGAGTCCGAAAGATACCCAACAA	59.419	43.478	0.00	0.00	0.00	2.83
1754	4554	3.455990	GGAAGAGTCCGAAAGATACCC	57.544	52.381	0.00	0.00	33.05	3.69
2108	4909	7.470702	GCTGCTTAATGGAGAATACTCAGTCTA	60.471	40.741	0.00	0.00	44.22	2.59
2340	7124	1.160329	CCATTCGGTCGCCCATCTTC	61.160	60.000	0.00	0.00	0.00	2.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.