Multiple sequence alignment - TraesCS7D01G330900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G330900 chr7D 100.000 2618 0 0 1 2618 422344123 422346740 0.000000e+00 4835.0
1 TraesCS7D01G330900 chr7D 98.485 132 2 0 2487 2618 414430723 414430592 1.570000e-57 233.0
2 TraesCS7D01G330900 chr7B 92.556 1639 82 21 383 2007 439553949 439555561 0.000000e+00 2314.0
3 TraesCS7D01G330900 chr7B 90.476 63 5 1 2371 2433 439566510 439566571 6.010000e-12 82.4
4 TraesCS7D01G330900 chr7A 88.545 1973 125 41 381 2300 510826429 510824505 0.000000e+00 2298.0
5 TraesCS7D01G330900 chr7A 89.623 318 29 3 67 381 48782925 48783241 4.060000e-108 401.0
6 TraesCS7D01G330900 chr7A 82.915 199 10 9 2297 2476 510767424 510767231 9.700000e-35 158.0
7 TraesCS7D01G330900 chr3D 91.927 384 26 4 1 380 6992338 6992720 1.380000e-147 532.0
8 TraesCS7D01G330900 chr3D 90.365 384 34 2 1 381 5545006 5545389 3.890000e-138 501.0
9 TraesCS7D01G330900 chr4D 90.885 384 31 3 1 380 459192978 459193361 1.800000e-141 512.0
10 TraesCS7D01G330900 chr2D 91.076 381 31 2 1 378 631747965 631747585 1.800000e-141 512.0
11 TraesCS7D01G330900 chr3B 90.339 383 34 2 1 380 8506501 8506883 1.400000e-137 499.0
12 TraesCS7D01G330900 chr3B 98.485 132 2 0 2487 2618 55006787 55006656 1.570000e-57 233.0
13 TraesCS7D01G330900 chr2B 90.365 384 31 5 1 381 677293497 677293877 1.400000e-137 499.0
14 TraesCS7D01G330900 chr2B 89.610 308 28 3 76 380 139360993 139360687 3.160000e-104 388.0
15 TraesCS7D01G330900 chr1B 86.719 384 31 4 1 381 127024727 127024361 2.430000e-110 409.0
16 TraesCS7D01G330900 chr2A 89.538 325 28 5 63 384 763971135 763970814 8.720000e-110 407.0
17 TraesCS7D01G330900 chr5A 78.654 609 92 15 935 1536 545927493 545928070 1.140000e-98 370.0
18 TraesCS7D01G330900 chr4A 97.778 135 3 0 2484 2618 631641395 631641261 1.570000e-57 233.0
19 TraesCS7D01G330900 chr4A 94.483 145 8 0 2474 2618 542621370 542621514 9.430000e-55 224.0
20 TraesCS7D01G330900 chr1A 97.761 134 3 0 2485 2618 571781752 571781619 5.630000e-57 231.0
21 TraesCS7D01G330900 chr6D 97.727 132 3 0 2487 2618 144603256 144603387 7.290000e-56 228.0
22 TraesCS7D01G330900 chr6D 96.350 137 5 0 2482 2618 448351874 448352010 2.620000e-55 226.0
23 TraesCS7D01G330900 chr6A 97.727 132 3 0 2487 2618 1429897 1429766 7.290000e-56 228.0
24 TraesCS7D01G330900 chr3A 97.037 135 2 2 2484 2618 472868088 472868220 2.620000e-55 226.0
25 TraesCS7D01G330900 chr6B 95.062 81 2 1 1 81 583452276 583452198 2.740000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G330900 chr7D 422344123 422346740 2617 False 4835 4835 100.000 1 2618 1 chr7D.!!$F1 2617
1 TraesCS7D01G330900 chr7B 439553949 439555561 1612 False 2314 2314 92.556 383 2007 1 chr7B.!!$F1 1624
2 TraesCS7D01G330900 chr7A 510824505 510826429 1924 True 2298 2298 88.545 381 2300 1 chr7A.!!$R2 1919
3 TraesCS7D01G330900 chr5A 545927493 545928070 577 False 370 370 78.654 935 1536 1 chr5A.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.037605 ACACTGGAACGGAATCGACC 60.038 55.0 0.0 0.0 40.11 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2189 2249 0.030235 TCGTCAAGTCACCTGTCACG 59.97 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.763931 TAGTGCCATTGGGTTGCTT 57.236 47.368 4.53 0.00 36.17 3.91
19 20 2.008242 TAGTGCCATTGGGTTGCTTT 57.992 45.000 4.53 0.00 36.17 3.51
20 21 2.008242 AGTGCCATTGGGTTGCTTTA 57.992 45.000 4.53 0.00 36.17 1.85
21 22 1.895131 AGTGCCATTGGGTTGCTTTAG 59.105 47.619 4.53 0.00 36.17 1.85
22 23 1.066929 GTGCCATTGGGTTGCTTTAGG 60.067 52.381 4.53 0.00 36.17 2.69
23 24 1.203112 TGCCATTGGGTTGCTTTAGGA 60.203 47.619 4.53 0.00 36.17 2.94
24 25 2.110578 GCCATTGGGTTGCTTTAGGAT 58.889 47.619 4.53 0.00 36.17 3.24
25 26 3.295973 GCCATTGGGTTGCTTTAGGATA 58.704 45.455 4.53 0.00 36.17 2.59
26 27 3.897505 GCCATTGGGTTGCTTTAGGATAT 59.102 43.478 4.53 0.00 36.17 1.63
27 28 4.344968 GCCATTGGGTTGCTTTAGGATATT 59.655 41.667 4.53 0.00 36.17 1.28
28 29 5.163311 GCCATTGGGTTGCTTTAGGATATTT 60.163 40.000 4.53 0.00 36.17 1.40
29 30 6.282930 CCATTGGGTTGCTTTAGGATATTTG 58.717 40.000 0.00 0.00 0.00 2.32
30 31 5.930837 TTGGGTTGCTTTAGGATATTTGG 57.069 39.130 0.00 0.00 0.00 3.28
31 32 5.199982 TGGGTTGCTTTAGGATATTTGGA 57.800 39.130 0.00 0.00 0.00 3.53
32 33 5.584913 TGGGTTGCTTTAGGATATTTGGAA 58.415 37.500 0.00 0.00 0.00 3.53
33 34 6.201591 TGGGTTGCTTTAGGATATTTGGAAT 58.798 36.000 0.00 0.00 0.00 3.01
34 35 6.098124 TGGGTTGCTTTAGGATATTTGGAATG 59.902 38.462 0.00 0.00 0.00 2.67
35 36 6.098266 GGGTTGCTTTAGGATATTTGGAATGT 59.902 38.462 0.00 0.00 0.00 2.71
36 37 6.980397 GGTTGCTTTAGGATATTTGGAATGTG 59.020 38.462 0.00 0.00 0.00 3.21
37 38 7.147915 GGTTGCTTTAGGATATTTGGAATGTGA 60.148 37.037 0.00 0.00 0.00 3.58
38 39 7.953005 TGCTTTAGGATATTTGGAATGTGAA 57.047 32.000 0.00 0.00 0.00 3.18
39 40 7.771183 TGCTTTAGGATATTTGGAATGTGAAC 58.229 34.615 0.00 0.00 0.00 3.18
40 41 7.395772 TGCTTTAGGATATTTGGAATGTGAACA 59.604 33.333 0.00 0.00 0.00 3.18
41 42 8.416329 GCTTTAGGATATTTGGAATGTGAACAT 58.584 33.333 0.00 0.00 38.41 2.71
42 43 9.740239 CTTTAGGATATTTGGAATGTGAACATG 57.260 33.333 0.00 0.00 36.56 3.21
43 44 8.821686 TTAGGATATTTGGAATGTGAACATGT 57.178 30.769 0.00 0.00 36.56 3.21
44 45 9.913310 TTAGGATATTTGGAATGTGAACATGTA 57.087 29.630 0.00 0.00 36.56 2.29
46 47 8.853126 AGGATATTTGGAATGTGAACATGTATG 58.147 33.333 0.00 0.00 36.56 2.39
47 48 8.084073 GGATATTTGGAATGTGAACATGTATGG 58.916 37.037 0.00 0.00 36.56 2.74
48 49 6.855763 ATTTGGAATGTGAACATGTATGGT 57.144 33.333 0.00 0.00 36.56 3.55
49 50 6.662865 TTTGGAATGTGAACATGTATGGTT 57.337 33.333 0.00 0.00 36.56 3.67
50 51 5.641783 TGGAATGTGAACATGTATGGTTG 57.358 39.130 0.00 0.00 36.56 3.77
51 52 5.076182 TGGAATGTGAACATGTATGGTTGT 58.924 37.500 0.00 0.00 36.56 3.32
52 53 6.241645 TGGAATGTGAACATGTATGGTTGTA 58.758 36.000 0.00 0.00 36.56 2.41
53 54 6.889177 TGGAATGTGAACATGTATGGTTGTAT 59.111 34.615 0.00 0.00 36.56 2.29
54 55 7.148103 TGGAATGTGAACATGTATGGTTGTATG 60.148 37.037 0.00 0.00 36.56 2.39
55 56 7.148086 GGAATGTGAACATGTATGGTTGTATGT 60.148 37.037 0.00 0.00 36.56 2.29
56 57 6.493449 TGTGAACATGTATGGTTGTATGTG 57.507 37.500 0.00 0.00 34.28 3.21
57 58 6.234177 TGTGAACATGTATGGTTGTATGTGA 58.766 36.000 0.00 0.00 34.28 3.58
58 59 6.371271 TGTGAACATGTATGGTTGTATGTGAG 59.629 38.462 0.00 0.00 34.28 3.51
59 60 6.593770 GTGAACATGTATGGTTGTATGTGAGA 59.406 38.462 0.00 0.00 34.28 3.27
60 61 6.818142 TGAACATGTATGGTTGTATGTGAGAG 59.182 38.462 0.00 0.00 34.28 3.20
61 62 6.544928 ACATGTATGGTTGTATGTGAGAGA 57.455 37.500 0.00 0.00 32.90 3.10
62 63 6.341316 ACATGTATGGTTGTATGTGAGAGAC 58.659 40.000 0.00 0.00 32.90 3.36
63 64 5.993748 TGTATGGTTGTATGTGAGAGACA 57.006 39.130 0.00 0.00 39.53 3.41
65 66 6.340522 TGTATGGTTGTATGTGAGAGACATG 58.659 40.000 0.00 0.00 45.43 3.21
66 67 4.890158 TGGTTGTATGTGAGAGACATGT 57.110 40.909 0.00 0.00 45.43 3.21
67 68 5.993748 TGGTTGTATGTGAGAGACATGTA 57.006 39.130 0.00 0.00 45.43 2.29
68 69 5.720202 TGGTTGTATGTGAGAGACATGTAC 58.280 41.667 0.00 0.00 45.43 2.90
69 70 5.480422 TGGTTGTATGTGAGAGACATGTACT 59.520 40.000 0.00 0.88 45.43 2.73
70 71 5.807520 GGTTGTATGTGAGAGACATGTACTG 59.192 44.000 0.00 0.00 45.43 2.74
71 72 5.582689 TGTATGTGAGAGACATGTACTGG 57.417 43.478 0.00 0.00 45.43 4.00
72 73 3.533606 ATGTGAGAGACATGTACTGGC 57.466 47.619 0.00 0.00 44.12 4.85
74 75 2.232208 TGTGAGAGACATGTACTGGCTG 59.768 50.000 0.00 0.00 46.06 4.85
75 76 2.493675 GTGAGAGACATGTACTGGCTGA 59.506 50.000 0.00 0.00 46.06 4.26
76 77 3.131933 GTGAGAGACATGTACTGGCTGAT 59.868 47.826 0.00 0.00 46.06 2.90
77 78 3.771479 TGAGAGACATGTACTGGCTGATT 59.229 43.478 0.00 0.00 46.06 2.57
78 79 4.118410 GAGAGACATGTACTGGCTGATTG 58.882 47.826 0.00 0.00 46.06 2.67
79 80 2.611292 GAGACATGTACTGGCTGATTGC 59.389 50.000 0.00 0.00 46.06 3.56
80 81 2.238144 AGACATGTACTGGCTGATTGCT 59.762 45.455 0.00 0.00 43.63 3.91
81 82 3.012518 GACATGTACTGGCTGATTGCTT 58.987 45.455 0.00 0.00 42.39 3.91
82 83 3.424703 ACATGTACTGGCTGATTGCTTT 58.575 40.909 0.00 0.00 42.39 3.51
83 84 3.828451 ACATGTACTGGCTGATTGCTTTT 59.172 39.130 0.00 0.00 42.39 2.27
84 85 3.921119 TGTACTGGCTGATTGCTTTTG 57.079 42.857 0.00 0.00 42.39 2.44
85 86 2.557924 TGTACTGGCTGATTGCTTTTGG 59.442 45.455 0.00 0.00 42.39 3.28
86 87 1.999648 ACTGGCTGATTGCTTTTGGA 58.000 45.000 0.00 0.00 42.39 3.53
87 88 2.532843 ACTGGCTGATTGCTTTTGGAT 58.467 42.857 0.00 0.00 42.39 3.41
88 89 2.232941 ACTGGCTGATTGCTTTTGGATG 59.767 45.455 0.00 0.00 42.39 3.51
89 90 2.232941 CTGGCTGATTGCTTTTGGATGT 59.767 45.455 0.00 0.00 42.39 3.06
90 91 2.028839 TGGCTGATTGCTTTTGGATGTG 60.029 45.455 0.00 0.00 42.39 3.21
91 92 2.613691 GCTGATTGCTTTTGGATGTGG 58.386 47.619 0.00 0.00 38.95 4.17
92 93 2.613691 CTGATTGCTTTTGGATGTGGC 58.386 47.619 0.00 0.00 0.00 5.01
93 94 1.969208 TGATTGCTTTTGGATGTGGCA 59.031 42.857 0.00 0.00 0.00 4.92
94 95 2.028839 TGATTGCTTTTGGATGTGGCAG 60.029 45.455 0.00 0.00 34.37 4.85
95 96 1.702182 TTGCTTTTGGATGTGGCAGA 58.298 45.000 0.00 0.00 34.37 4.26
96 97 1.927487 TGCTTTTGGATGTGGCAGAT 58.073 45.000 0.00 0.00 0.00 2.90
97 98 1.546923 TGCTTTTGGATGTGGCAGATG 59.453 47.619 0.12 0.00 0.00 2.90
98 99 1.820519 GCTTTTGGATGTGGCAGATGA 59.179 47.619 0.12 0.00 0.00 2.92
99 100 2.231964 GCTTTTGGATGTGGCAGATGAA 59.768 45.455 0.12 0.00 0.00 2.57
100 101 3.841643 CTTTTGGATGTGGCAGATGAAC 58.158 45.455 0.12 0.00 0.00 3.18
101 102 2.885135 TTGGATGTGGCAGATGAACT 57.115 45.000 0.12 0.00 0.00 3.01
102 103 2.885135 TGGATGTGGCAGATGAACTT 57.115 45.000 0.12 0.00 0.00 2.66
103 104 2.439409 TGGATGTGGCAGATGAACTTG 58.561 47.619 0.12 0.00 0.00 3.16
104 105 1.133790 GGATGTGGCAGATGAACTTGC 59.866 52.381 0.12 0.00 0.00 4.01
105 106 2.089980 GATGTGGCAGATGAACTTGCT 58.910 47.619 0.12 0.00 0.00 3.91
106 107 2.857186 TGTGGCAGATGAACTTGCTA 57.143 45.000 0.00 0.00 0.00 3.49
107 108 2.426522 TGTGGCAGATGAACTTGCTAC 58.573 47.619 6.09 6.09 36.02 3.58
108 109 1.740025 GTGGCAGATGAACTTGCTACC 59.260 52.381 2.09 0.00 32.66 3.18
109 110 1.630369 TGGCAGATGAACTTGCTACCT 59.370 47.619 0.00 0.00 0.00 3.08
110 111 2.012673 GGCAGATGAACTTGCTACCTG 58.987 52.381 0.00 0.00 0.00 4.00
111 112 2.355108 GGCAGATGAACTTGCTACCTGA 60.355 50.000 0.00 0.00 0.00 3.86
112 113 3.539604 GCAGATGAACTTGCTACCTGAT 58.460 45.455 0.00 0.00 0.00 2.90
113 114 3.944015 GCAGATGAACTTGCTACCTGATT 59.056 43.478 0.00 0.00 0.00 2.57
114 115 4.201891 GCAGATGAACTTGCTACCTGATTG 60.202 45.833 0.00 0.00 0.00 2.67
115 116 3.944015 AGATGAACTTGCTACCTGATTGC 59.056 43.478 0.00 0.00 0.00 3.56
116 117 3.423539 TGAACTTGCTACCTGATTGCT 57.576 42.857 0.00 0.00 0.00 3.91
117 118 4.551702 TGAACTTGCTACCTGATTGCTA 57.448 40.909 0.00 0.00 0.00 3.49
118 119 4.253685 TGAACTTGCTACCTGATTGCTAC 58.746 43.478 0.00 0.00 0.00 3.58
119 120 3.268023 ACTTGCTACCTGATTGCTACC 57.732 47.619 0.00 0.00 0.00 3.18
120 121 2.840651 ACTTGCTACCTGATTGCTACCT 59.159 45.455 0.00 0.00 0.00 3.08
121 122 3.264450 ACTTGCTACCTGATTGCTACCTT 59.736 43.478 0.00 0.00 0.00 3.50
122 123 4.469945 ACTTGCTACCTGATTGCTACCTTA 59.530 41.667 0.00 0.00 0.00 2.69
123 124 5.131142 ACTTGCTACCTGATTGCTACCTTAT 59.869 40.000 0.00 0.00 0.00 1.73
124 125 4.960938 TGCTACCTGATTGCTACCTTATG 58.039 43.478 0.00 0.00 0.00 1.90
125 126 4.653801 TGCTACCTGATTGCTACCTTATGA 59.346 41.667 0.00 0.00 0.00 2.15
126 127 5.307976 TGCTACCTGATTGCTACCTTATGAT 59.692 40.000 0.00 0.00 0.00 2.45
127 128 6.496911 TGCTACCTGATTGCTACCTTATGATA 59.503 38.462 0.00 0.00 0.00 2.15
128 129 7.180946 TGCTACCTGATTGCTACCTTATGATAT 59.819 37.037 0.00 0.00 0.00 1.63
129 130 8.043710 GCTACCTGATTGCTACCTTATGATATT 58.956 37.037 0.00 0.00 0.00 1.28
135 136 9.964354 TGATTGCTACCTTATGATATTATTGCT 57.036 29.630 0.00 0.00 0.00 3.91
137 138 9.964354 ATTGCTACCTTATGATATTATTGCTGA 57.036 29.630 0.00 0.00 0.00 4.26
138 139 9.791801 TTGCTACCTTATGATATTATTGCTGAA 57.208 29.630 0.00 0.00 0.00 3.02
139 140 9.791801 TGCTACCTTATGATATTATTGCTGAAA 57.208 29.630 0.00 0.00 0.00 2.69
154 155 9.624697 TTATTGCTGAAAATTGTGTTCTATGTC 57.375 29.630 0.00 0.00 0.00 3.06
155 156 6.631971 TGCTGAAAATTGTGTTCTATGTCA 57.368 33.333 0.00 0.00 0.00 3.58
156 157 7.036996 TGCTGAAAATTGTGTTCTATGTCAA 57.963 32.000 0.00 0.00 0.00 3.18
157 158 7.660112 TGCTGAAAATTGTGTTCTATGTCAAT 58.340 30.769 0.00 0.00 32.86 2.57
158 159 8.791675 TGCTGAAAATTGTGTTCTATGTCAATA 58.208 29.630 0.00 0.00 31.54 1.90
159 160 9.793252 GCTGAAAATTGTGTTCTATGTCAATAT 57.207 29.630 0.00 0.00 31.54 1.28
214 215 9.545105 ACTAATGAAATGTTGCTGAATTTTTGA 57.455 25.926 0.00 0.00 0.00 2.69
219 220 9.719279 TGAAATGTTGCTGAATTTTTGAATTTC 57.281 25.926 0.00 0.00 33.19 2.17
220 221 9.940166 GAAATGTTGCTGAATTTTTGAATTTCT 57.060 25.926 0.00 0.00 31.06 2.52
221 222 9.724839 AAATGTTGCTGAATTTTTGAATTTCTG 57.275 25.926 0.00 0.00 0.00 3.02
222 223 6.717413 TGTTGCTGAATTTTTGAATTTCTGC 58.283 32.000 14.64 14.64 41.73 4.26
223 224 6.539464 TGTTGCTGAATTTTTGAATTTCTGCT 59.461 30.769 18.74 0.00 41.81 4.24
224 225 6.533819 TGCTGAATTTTTGAATTTCTGCTG 57.466 33.333 18.74 0.00 41.81 4.41
225 226 6.050432 TGCTGAATTTTTGAATTTCTGCTGT 58.950 32.000 18.74 0.00 41.81 4.40
226 227 6.539464 TGCTGAATTTTTGAATTTCTGCTGTT 59.461 30.769 18.74 0.00 41.81 3.16
227 228 7.067728 GCTGAATTTTTGAATTTCTGCTGTTC 58.932 34.615 14.41 0.00 39.98 3.18
228 229 7.481275 TGAATTTTTGAATTTCTGCTGTTCC 57.519 32.000 0.00 0.00 0.00 3.62
229 230 7.046652 TGAATTTTTGAATTTCTGCTGTTCCA 58.953 30.769 0.00 0.00 0.00 3.53
230 231 7.716123 TGAATTTTTGAATTTCTGCTGTTCCAT 59.284 29.630 0.00 0.00 0.00 3.41
231 232 8.454570 AATTTTTGAATTTCTGCTGTTCCATT 57.545 26.923 0.00 0.00 0.00 3.16
232 233 7.862512 TTTTTGAATTTCTGCTGTTCCATTT 57.137 28.000 0.00 0.00 0.00 2.32
233 234 7.862512 TTTTGAATTTCTGCTGTTCCATTTT 57.137 28.000 0.00 0.00 0.00 1.82
234 235 7.862512 TTTGAATTTCTGCTGTTCCATTTTT 57.137 28.000 0.00 0.00 0.00 1.94
235 236 7.481275 TTGAATTTCTGCTGTTCCATTTTTC 57.519 32.000 0.00 0.00 0.00 2.29
236 237 6.580788 TGAATTTCTGCTGTTCCATTTTTCA 58.419 32.000 0.00 0.00 0.00 2.69
237 238 7.218614 TGAATTTCTGCTGTTCCATTTTTCAT 58.781 30.769 0.00 0.00 0.00 2.57
238 239 7.716123 TGAATTTCTGCTGTTCCATTTTTCATT 59.284 29.630 0.00 0.00 0.00 2.57
239 240 7.662604 ATTTCTGCTGTTCCATTTTTCATTC 57.337 32.000 0.00 0.00 0.00 2.67
240 241 5.138125 TCTGCTGTTCCATTTTTCATTCC 57.862 39.130 0.00 0.00 0.00 3.01
241 242 4.588106 TCTGCTGTTCCATTTTTCATTCCA 59.412 37.500 0.00 0.00 0.00 3.53
242 243 5.246656 TCTGCTGTTCCATTTTTCATTCCAT 59.753 36.000 0.00 0.00 0.00 3.41
243 244 5.867330 TGCTGTTCCATTTTTCATTCCATT 58.133 33.333 0.00 0.00 0.00 3.16
244 245 7.002250 TGCTGTTCCATTTTTCATTCCATTA 57.998 32.000 0.00 0.00 0.00 1.90
245 246 7.622713 TGCTGTTCCATTTTTCATTCCATTAT 58.377 30.769 0.00 0.00 0.00 1.28
246 247 8.102047 TGCTGTTCCATTTTTCATTCCATTATT 58.898 29.630 0.00 0.00 0.00 1.40
247 248 8.949177 GCTGTTCCATTTTTCATTCCATTATTT 58.051 29.630 0.00 0.00 0.00 1.40
262 263 8.830201 TTCCATTATTTCAAATCAAACACTGG 57.170 30.769 0.00 0.00 0.00 4.00
263 264 8.187913 TCCATTATTTCAAATCAAACACTGGA 57.812 30.769 0.00 0.00 0.00 3.86
264 265 8.646004 TCCATTATTTCAAATCAAACACTGGAA 58.354 29.630 0.00 0.00 0.00 3.53
265 266 8.711457 CCATTATTTCAAATCAAACACTGGAAC 58.289 33.333 0.00 0.00 0.00 3.62
266 267 7.922505 TTATTTCAAATCAAACACTGGAACG 57.077 32.000 0.00 0.00 0.00 3.95
267 268 3.980646 TCAAATCAAACACTGGAACGG 57.019 42.857 0.00 0.00 42.99 4.44
268 269 3.546724 TCAAATCAAACACTGGAACGGA 58.453 40.909 0.00 0.00 38.67 4.69
269 270 3.948473 TCAAATCAAACACTGGAACGGAA 59.052 39.130 0.00 0.00 38.67 4.30
270 271 4.582656 TCAAATCAAACACTGGAACGGAAT 59.417 37.500 0.00 0.00 38.67 3.01
271 272 4.766404 AATCAAACACTGGAACGGAATC 57.234 40.909 0.00 0.00 38.67 2.52
272 273 2.139917 TCAAACACTGGAACGGAATCG 58.860 47.619 0.00 0.00 43.02 3.34
273 274 2.139917 CAAACACTGGAACGGAATCGA 58.860 47.619 0.00 0.00 40.11 3.59
274 275 1.792006 AACACTGGAACGGAATCGAC 58.208 50.000 0.00 0.00 40.11 4.20
275 276 0.037605 ACACTGGAACGGAATCGACC 60.038 55.000 0.00 0.00 40.11 4.79
284 285 2.556534 CGGAATCGACCGTTCTACTT 57.443 50.000 6.32 0.00 46.70 2.24
285 286 2.872370 CGGAATCGACCGTTCTACTTT 58.128 47.619 6.32 0.00 46.70 2.66
286 287 3.248266 CGGAATCGACCGTTCTACTTTT 58.752 45.455 6.32 0.00 46.70 2.27
287 288 3.676646 CGGAATCGACCGTTCTACTTTTT 59.323 43.478 6.32 0.00 46.70 1.94
309 310 7.995463 TTTTGCACCTATTAAACACAGAAAC 57.005 32.000 0.00 0.00 0.00 2.78
310 311 5.351233 TGCACCTATTAAACACAGAAACG 57.649 39.130 0.00 0.00 0.00 3.60
311 312 4.817464 TGCACCTATTAAACACAGAAACGT 59.183 37.500 0.00 0.00 0.00 3.99
312 313 5.990386 TGCACCTATTAAACACAGAAACGTA 59.010 36.000 0.00 0.00 0.00 3.57
313 314 6.482641 TGCACCTATTAAACACAGAAACGTAA 59.517 34.615 0.00 0.00 0.00 3.18
314 315 6.793680 GCACCTATTAAACACAGAAACGTAAC 59.206 38.462 0.00 0.00 0.00 2.50
315 316 7.293018 CACCTATTAAACACAGAAACGTAACC 58.707 38.462 0.00 0.00 0.00 2.85
316 317 6.146021 ACCTATTAAACACAGAAACGTAACCG 59.854 38.462 0.00 0.00 40.83 4.44
317 318 6.365789 CCTATTAAACACAGAAACGTAACCGA 59.634 38.462 0.00 0.00 37.88 4.69
318 319 6.790285 ATTAAACACAGAAACGTAACCGAT 57.210 33.333 0.00 0.00 37.88 4.18
319 320 4.720530 AAACACAGAAACGTAACCGATC 57.279 40.909 0.00 0.00 37.88 3.69
320 321 3.655276 ACACAGAAACGTAACCGATCT 57.345 42.857 0.00 0.00 37.88 2.75
321 322 3.314553 ACACAGAAACGTAACCGATCTG 58.685 45.455 15.54 15.54 46.70 2.90
324 325 4.985044 CAGAAACGTAACCGATCTGTTT 57.015 40.909 7.87 1.13 41.80 2.83
325 326 4.942765 CAGAAACGTAACCGATCTGTTTC 58.057 43.478 7.87 9.29 45.32 2.78
326 327 4.446385 CAGAAACGTAACCGATCTGTTTCA 59.554 41.667 7.87 0.00 46.62 2.69
327 328 5.050634 CAGAAACGTAACCGATCTGTTTCAA 60.051 40.000 7.87 0.00 46.62 2.69
328 329 5.699458 AGAAACGTAACCGATCTGTTTCAAT 59.301 36.000 7.87 0.00 46.62 2.57
329 330 4.921470 ACGTAACCGATCTGTTTCAATG 57.079 40.909 7.87 0.00 37.88 2.82
330 331 3.682858 ACGTAACCGATCTGTTTCAATGG 59.317 43.478 7.87 0.00 37.88 3.16
331 332 3.682858 CGTAACCGATCTGTTTCAATGGT 59.317 43.478 7.87 0.00 35.63 3.55
332 333 4.435518 CGTAACCGATCTGTTTCAATGGTG 60.436 45.833 7.87 0.00 35.63 4.17
333 334 3.417069 ACCGATCTGTTTCAATGGTGA 57.583 42.857 0.00 0.00 0.00 4.02
334 335 3.750371 ACCGATCTGTTTCAATGGTGAA 58.250 40.909 0.00 0.00 42.12 3.18
335 336 9.364383 CGTAACCGATCTGTTTCAATGGTGAAA 62.364 40.741 7.87 0.00 42.84 2.69
350 351 3.216147 GTGAAACCATTCCATTCCGTG 57.784 47.619 0.00 0.00 34.49 4.94
351 352 2.817258 GTGAAACCATTCCATTCCGTGA 59.183 45.455 0.00 0.00 34.49 4.35
352 353 2.817258 TGAAACCATTCCATTCCGTGAC 59.183 45.455 0.00 0.00 34.49 3.67
353 354 2.577606 AACCATTCCATTCCGTGACA 57.422 45.000 0.00 0.00 0.00 3.58
354 355 2.113860 ACCATTCCATTCCGTGACAG 57.886 50.000 0.00 0.00 0.00 3.51
355 356 1.351017 ACCATTCCATTCCGTGACAGT 59.649 47.619 0.00 0.00 0.00 3.55
356 357 2.224769 ACCATTCCATTCCGTGACAGTT 60.225 45.455 0.00 0.00 0.00 3.16
357 358 2.162208 CCATTCCATTCCGTGACAGTTG 59.838 50.000 0.00 0.00 0.00 3.16
358 359 1.890876 TTCCATTCCGTGACAGTTGG 58.109 50.000 0.00 0.00 0.00 3.77
359 360 0.762418 TCCATTCCGTGACAGTTGGT 59.238 50.000 0.00 0.00 0.00 3.67
360 361 1.142060 TCCATTCCGTGACAGTTGGTT 59.858 47.619 0.00 0.00 0.00 3.67
361 362 1.535462 CCATTCCGTGACAGTTGGTTC 59.465 52.381 0.00 0.00 0.00 3.62
362 363 1.535462 CATTCCGTGACAGTTGGTTCC 59.465 52.381 0.00 0.00 0.00 3.62
363 364 0.834612 TTCCGTGACAGTTGGTTCCT 59.165 50.000 0.00 0.00 0.00 3.36
364 365 0.391597 TCCGTGACAGTTGGTTCCTC 59.608 55.000 0.00 0.00 0.00 3.71
365 366 0.105964 CCGTGACAGTTGGTTCCTCA 59.894 55.000 0.00 0.00 0.00 3.86
366 367 1.474320 CCGTGACAGTTGGTTCCTCAA 60.474 52.381 0.00 0.00 0.00 3.02
367 368 1.597663 CGTGACAGTTGGTTCCTCAAC 59.402 52.381 0.00 0.00 45.22 3.18
377 378 2.863401 GTTCCTCAACCAAACACACC 57.137 50.000 0.00 0.00 0.00 4.16
378 379 1.407618 GTTCCTCAACCAAACACACCC 59.592 52.381 0.00 0.00 0.00 4.61
379 380 0.923358 TCCTCAACCAAACACACCCT 59.077 50.000 0.00 0.00 0.00 4.34
384 385 0.178973 AACCAAACACACCCTAGGCC 60.179 55.000 2.05 0.00 0.00 5.19
567 572 3.936203 TGCGCACTTCTCCCCGTT 61.936 61.111 5.66 0.00 0.00 4.44
635 652 2.049063 GCTCACGCCTGAGACGTT 60.049 61.111 15.84 0.00 46.32 3.99
686 708 0.522705 CGCACGCTCGAACTAGCTAA 60.523 55.000 0.00 0.00 40.49 3.09
899 932 2.464380 CGCGAATCTTGACTCATCGTAC 59.536 50.000 0.00 0.00 36.01 3.67
1639 1686 0.855349 CCGATTCATACGACTGCTGC 59.145 55.000 0.00 0.00 0.00 5.25
1662 1713 3.603158 TTGCTGTAGCGACATTCCTTA 57.397 42.857 0.00 0.00 45.83 2.69
1699 1754 0.167251 CGAATTACCCACACGGCAAC 59.833 55.000 0.00 0.00 33.26 4.17
1726 1781 6.872920 AGCCAATGTAGTAGAGAAAGAAGAG 58.127 40.000 0.00 0.00 0.00 2.85
1727 1782 6.439058 AGCCAATGTAGTAGAGAAAGAAGAGT 59.561 38.462 0.00 0.00 0.00 3.24
1728 1783 7.038658 AGCCAATGTAGTAGAGAAAGAAGAGTT 60.039 37.037 0.00 0.00 0.00 3.01
1729 1784 7.276878 GCCAATGTAGTAGAGAAAGAAGAGTTC 59.723 40.741 0.00 0.00 0.00 3.01
1730 1785 7.486551 CCAATGTAGTAGAGAAAGAAGAGTTCG 59.513 40.741 0.00 0.00 34.02 3.95
1731 1786 7.925043 ATGTAGTAGAGAAAGAAGAGTTCGA 57.075 36.000 0.00 0.00 34.02 3.71
1732 1787 7.925043 TGTAGTAGAGAAAGAAGAGTTCGAT 57.075 36.000 0.00 0.00 34.02 3.59
1733 1788 8.338072 TGTAGTAGAGAAAGAAGAGTTCGATT 57.662 34.615 0.00 0.00 34.02 3.34
1737 1792 8.463607 AGTAGAGAAAGAAGAGTTCGATTTAGG 58.536 37.037 0.00 0.00 34.02 2.69
1738 1793 6.635755 AGAGAAAGAAGAGTTCGATTTAGGG 58.364 40.000 0.00 0.00 34.02 3.53
1739 1794 6.437793 AGAGAAAGAAGAGTTCGATTTAGGGA 59.562 38.462 0.00 0.00 34.02 4.20
1740 1795 6.635755 AGAAAGAAGAGTTCGATTTAGGGAG 58.364 40.000 0.00 0.00 34.02 4.30
1746 1801 5.464984 AGAGTTCGATTTAGGGAGGGATTA 58.535 41.667 0.00 0.00 0.00 1.75
1755 1810 7.553044 CGATTTAGGGAGGGATTATTACCATTC 59.447 40.741 0.00 0.00 0.00 2.67
1798 1853 0.810426 TTGGCGTACGTGCAGTTCAA 60.810 50.000 17.90 7.56 36.28 2.69
1824 1879 7.239763 TGGTGTATTCAGTGAGACAAGAATA 57.760 36.000 10.57 0.00 33.22 1.75
1897 1952 4.671569 GCAGGCGCGAGGGGATAG 62.672 72.222 12.10 0.00 0.00 2.08
1906 1961 0.470080 CGAGGGGATAGGCTTGAGGA 60.470 60.000 0.00 0.00 0.00 3.71
1951 2006 4.686554 CGACTTGAGATAATCCGGAAATCC 59.313 45.833 20.81 14.78 0.00 3.01
2033 2088 3.818787 CAAGCAGGCATGGGCGTC 61.819 66.667 0.00 0.00 42.47 5.19
2115 2175 3.997064 CTTGCGCCGACCTCCTCTG 62.997 68.421 4.18 0.00 0.00 3.35
2133 2193 4.172512 CGCCTGGCCTGAGCAGAT 62.173 66.667 14.12 0.00 42.56 2.90
2163 2223 8.025445 GCTTATGATGATCACAATTGGTAATCC 58.975 37.037 10.83 0.00 0.00 3.01
2186 2246 0.731855 GAGGGTACGAGCGTGTTGAC 60.732 60.000 5.69 0.00 0.00 3.18
2189 2249 1.615107 GGTACGAGCGTGTTGACAGC 61.615 60.000 5.69 0.00 0.00 4.40
2190 2250 1.728074 TACGAGCGTGTTGACAGCG 60.728 57.895 5.69 0.00 35.78 5.18
2191 2251 2.396747 TACGAGCGTGTTGACAGCGT 62.397 55.000 5.69 0.00 35.78 5.07
2192 2252 2.546321 GAGCGTGTTGACAGCGTG 59.454 61.111 7.54 0.00 35.78 5.34
2193 2253 1.949133 GAGCGTGTTGACAGCGTGA 60.949 57.895 7.54 0.00 35.78 4.35
2194 2254 2.147204 GAGCGTGTTGACAGCGTGAC 62.147 60.000 7.54 0.00 35.78 3.67
2195 2255 2.521771 GCGTGTTGACAGCGTGACA 61.522 57.895 7.54 0.00 0.00 3.58
2196 2256 1.559814 CGTGTTGACAGCGTGACAG 59.440 57.895 0.00 0.00 0.00 3.51
2197 2257 1.821241 CGTGTTGACAGCGTGACAGG 61.821 60.000 0.00 0.00 0.00 4.00
2207 2267 1.548973 GCGTGACAGGTGACTTGACG 61.549 60.000 0.38 3.09 40.21 4.35
2221 2281 0.963225 TTGACGATGGAGGACGTGAA 59.037 50.000 0.00 0.00 42.74 3.18
2237 2297 1.227853 GAAACACTCCACGCCAGGT 60.228 57.895 0.00 0.00 0.00 4.00
2281 2341 2.145397 AGTGAGCTCCGAATGTCCTA 57.855 50.000 12.15 0.00 0.00 2.94
2288 2348 1.876714 CCGAATGTCCTACGCACGG 60.877 63.158 0.00 0.00 0.00 4.94
2291 2351 1.488527 GAATGTCCTACGCACGGATC 58.511 55.000 0.00 0.00 32.25 3.36
2294 2354 1.753930 TGTCCTACGCACGGATCTTA 58.246 50.000 0.00 0.00 32.25 2.10
2295 2355 1.674441 TGTCCTACGCACGGATCTTAG 59.326 52.381 0.00 0.00 32.25 2.18
2296 2356 0.666913 TCCTACGCACGGATCTTAGC 59.333 55.000 0.00 0.00 0.00 3.09
2297 2357 0.669077 CCTACGCACGGATCTTAGCT 59.331 55.000 0.00 0.00 0.00 3.32
2298 2358 1.067212 CCTACGCACGGATCTTAGCTT 59.933 52.381 0.00 0.00 0.00 3.74
2299 2359 2.292569 CCTACGCACGGATCTTAGCTTA 59.707 50.000 0.00 0.00 0.00 3.09
2301 2361 3.014604 ACGCACGGATCTTAGCTTATC 57.985 47.619 0.00 0.00 0.00 1.75
2302 2362 2.288273 ACGCACGGATCTTAGCTTATCC 60.288 50.000 10.83 10.83 38.66 2.59
2303 2363 2.689646 GCACGGATCTTAGCTTATCCC 58.310 52.381 13.79 0.79 38.80 3.85
2304 2364 2.613223 GCACGGATCTTAGCTTATCCCC 60.613 54.545 13.79 1.69 38.80 4.81
2305 2365 1.893801 ACGGATCTTAGCTTATCCCCG 59.106 52.381 13.79 13.31 38.80 5.73
2306 2366 1.893801 CGGATCTTAGCTTATCCCCGT 59.106 52.381 13.79 0.00 38.80 5.28
2307 2367 2.299297 CGGATCTTAGCTTATCCCCGTT 59.701 50.000 13.79 0.00 38.80 4.44
2308 2368 3.614390 CGGATCTTAGCTTATCCCCGTTC 60.614 52.174 13.79 0.00 38.80 3.95
2309 2369 3.323979 GGATCTTAGCTTATCCCCGTTCA 59.676 47.826 10.05 0.00 36.44 3.18
2310 2370 3.814005 TCTTAGCTTATCCCCGTTCAC 57.186 47.619 0.00 0.00 0.00 3.18
2311 2371 2.100252 TCTTAGCTTATCCCCGTTCACG 59.900 50.000 0.00 0.00 39.44 4.35
2312 2372 0.103572 TAGCTTATCCCCGTTCACGC 59.896 55.000 0.00 0.00 38.18 5.34
2313 2373 2.522638 GCTTATCCCCGTTCACGCG 61.523 63.158 3.53 3.53 38.18 6.01
2323 2383 1.405461 CGTTCACGCGGATAGTATGG 58.595 55.000 12.47 0.00 0.00 2.74
2324 2384 1.268896 CGTTCACGCGGATAGTATGGT 60.269 52.381 12.47 0.00 0.00 3.55
2325 2385 2.031769 CGTTCACGCGGATAGTATGGTA 60.032 50.000 12.47 0.00 0.00 3.25
2326 2386 3.365666 CGTTCACGCGGATAGTATGGTAT 60.366 47.826 12.47 0.00 0.00 2.73
2327 2387 3.842732 TCACGCGGATAGTATGGTATG 57.157 47.619 12.47 0.00 0.00 2.39
2328 2388 2.490509 TCACGCGGATAGTATGGTATGG 59.509 50.000 12.47 0.00 0.00 2.74
2329 2389 2.230508 CACGCGGATAGTATGGTATGGT 59.769 50.000 12.47 0.00 0.00 3.55
2330 2390 2.230508 ACGCGGATAGTATGGTATGGTG 59.769 50.000 12.47 0.00 0.00 4.17
2331 2391 2.230508 CGCGGATAGTATGGTATGGTGT 59.769 50.000 0.00 0.00 0.00 4.16
2332 2392 3.585862 GCGGATAGTATGGTATGGTGTG 58.414 50.000 0.00 0.00 0.00 3.82
2333 2393 3.006537 GCGGATAGTATGGTATGGTGTGT 59.993 47.826 0.00 0.00 0.00 3.72
2334 2394 4.556233 CGGATAGTATGGTATGGTGTGTG 58.444 47.826 0.00 0.00 0.00 3.82
2335 2395 4.560716 CGGATAGTATGGTATGGTGTGTGG 60.561 50.000 0.00 0.00 0.00 4.17
2336 2396 2.710096 AGTATGGTATGGTGTGTGGC 57.290 50.000 0.00 0.00 0.00 5.01
2337 2397 2.196595 AGTATGGTATGGTGTGTGGCT 58.803 47.619 0.00 0.00 0.00 4.75
2338 2398 2.576191 AGTATGGTATGGTGTGTGGCTT 59.424 45.455 0.00 0.00 0.00 4.35
2339 2399 3.778075 AGTATGGTATGGTGTGTGGCTTA 59.222 43.478 0.00 0.00 0.00 3.09
2340 2400 2.483014 TGGTATGGTGTGTGGCTTAC 57.517 50.000 0.00 0.00 0.00 2.34
2341 2401 1.338294 TGGTATGGTGTGTGGCTTACG 60.338 52.381 0.00 0.00 0.00 3.18
2342 2402 1.338389 GGTATGGTGTGTGGCTTACGT 60.338 52.381 0.00 0.00 0.00 3.57
2343 2403 1.730064 GTATGGTGTGTGGCTTACGTG 59.270 52.381 0.00 0.00 0.00 4.49
2344 2404 0.107831 ATGGTGTGTGGCTTACGTGT 59.892 50.000 0.00 0.00 0.00 4.49
2345 2405 0.107606 TGGTGTGTGGCTTACGTGTT 60.108 50.000 0.00 0.00 0.00 3.32
2346 2406 0.584876 GGTGTGTGGCTTACGTGTTC 59.415 55.000 0.00 0.00 0.00 3.18
2347 2407 0.584876 GTGTGTGGCTTACGTGTTCC 59.415 55.000 0.00 0.00 0.00 3.62
2348 2408 0.178301 TGTGTGGCTTACGTGTTCCA 59.822 50.000 0.00 0.00 0.00 3.53
2349 2409 1.202710 TGTGTGGCTTACGTGTTCCAT 60.203 47.619 0.00 0.00 0.00 3.41
2350 2410 1.196808 GTGTGGCTTACGTGTTCCATG 59.803 52.381 0.00 0.00 0.00 3.66
2351 2411 0.168128 GTGGCTTACGTGTTCCATGC 59.832 55.000 0.00 0.00 0.00 4.06
2352 2412 0.036164 TGGCTTACGTGTTCCATGCT 59.964 50.000 0.00 0.00 0.00 3.79
2353 2413 0.727398 GGCTTACGTGTTCCATGCTC 59.273 55.000 0.00 0.00 0.00 4.26
2354 2414 1.676014 GGCTTACGTGTTCCATGCTCT 60.676 52.381 0.00 0.00 0.00 4.09
2355 2415 1.661112 GCTTACGTGTTCCATGCTCTC 59.339 52.381 0.00 0.00 0.00 3.20
2356 2416 2.271800 CTTACGTGTTCCATGCTCTCC 58.728 52.381 0.00 0.00 0.00 3.71
2357 2417 1.262417 TACGTGTTCCATGCTCTCCA 58.738 50.000 0.00 0.00 0.00 3.86
2358 2418 0.320771 ACGTGTTCCATGCTCTCCAC 60.321 55.000 0.00 0.00 0.00 4.02
2359 2419 0.320683 CGTGTTCCATGCTCTCCACA 60.321 55.000 0.00 0.00 0.00 4.17
2360 2420 1.676916 CGTGTTCCATGCTCTCCACAT 60.677 52.381 0.00 0.00 0.00 3.21
2361 2421 2.440409 GTGTTCCATGCTCTCCACATT 58.560 47.619 0.00 0.00 0.00 2.71
2362 2422 2.163010 GTGTTCCATGCTCTCCACATTG 59.837 50.000 0.00 0.00 0.00 2.82
2363 2423 2.040145 TGTTCCATGCTCTCCACATTGA 59.960 45.455 0.00 0.00 0.00 2.57
2364 2424 3.084039 GTTCCATGCTCTCCACATTGAA 58.916 45.455 0.00 0.00 29.54 2.69
2365 2425 2.715046 TCCATGCTCTCCACATTGAAC 58.285 47.619 0.00 0.00 0.00 3.18
2366 2426 2.040145 TCCATGCTCTCCACATTGAACA 59.960 45.455 0.00 0.00 0.00 3.18
2367 2427 2.422479 CCATGCTCTCCACATTGAACAG 59.578 50.000 0.00 0.00 0.00 3.16
2368 2428 2.936919 TGCTCTCCACATTGAACAGT 57.063 45.000 0.00 0.00 0.00 3.55
2369 2429 3.213206 TGCTCTCCACATTGAACAGTT 57.787 42.857 0.00 0.00 0.00 3.16
2370 2430 2.880268 TGCTCTCCACATTGAACAGTTG 59.120 45.455 0.00 0.00 0.00 3.16
2371 2431 2.880890 GCTCTCCACATTGAACAGTTGT 59.119 45.455 0.00 0.00 0.00 3.32
2372 2432 4.065088 GCTCTCCACATTGAACAGTTGTA 58.935 43.478 0.00 0.00 0.00 2.41
2373 2433 4.083802 GCTCTCCACATTGAACAGTTGTAC 60.084 45.833 0.00 0.00 0.00 2.90
2374 2434 5.290493 TCTCCACATTGAACAGTTGTACT 57.710 39.130 0.00 0.00 0.00 2.73
2375 2435 6.413783 TCTCCACATTGAACAGTTGTACTA 57.586 37.500 0.00 0.00 0.00 1.82
2376 2436 6.455647 TCTCCACATTGAACAGTTGTACTAG 58.544 40.000 0.00 0.00 0.00 2.57
2377 2437 4.994852 TCCACATTGAACAGTTGTACTAGC 59.005 41.667 0.00 0.00 0.00 3.42
2378 2438 4.997395 CCACATTGAACAGTTGTACTAGCT 59.003 41.667 0.00 0.00 0.00 3.32
2379 2439 6.014925 TCCACATTGAACAGTTGTACTAGCTA 60.015 38.462 0.00 0.00 0.00 3.32
2380 2440 6.649141 CCACATTGAACAGTTGTACTAGCTAA 59.351 38.462 0.00 0.00 0.00 3.09
2381 2441 7.148573 CCACATTGAACAGTTGTACTAGCTAAG 60.149 40.741 0.00 0.00 0.00 2.18
2382 2442 6.874134 ACATTGAACAGTTGTACTAGCTAAGG 59.126 38.462 0.00 0.00 0.00 2.69
2383 2443 5.401531 TGAACAGTTGTACTAGCTAAGGG 57.598 43.478 0.00 0.00 0.00 3.95
2384 2444 5.081728 TGAACAGTTGTACTAGCTAAGGGA 58.918 41.667 0.00 0.00 0.00 4.20
2385 2445 5.047519 TGAACAGTTGTACTAGCTAAGGGAC 60.048 44.000 0.00 0.00 0.00 4.46
2386 2446 3.768215 ACAGTTGTACTAGCTAAGGGACC 59.232 47.826 0.00 0.00 0.00 4.46
2387 2447 3.132467 CAGTTGTACTAGCTAAGGGACCC 59.868 52.174 0.59 0.59 0.00 4.46
2388 2448 3.012616 AGTTGTACTAGCTAAGGGACCCT 59.987 47.826 7.44 7.44 33.87 4.34
2389 2449 3.309600 TGTACTAGCTAAGGGACCCTC 57.690 52.381 15.27 0.69 30.89 4.30
2390 2450 2.857498 TGTACTAGCTAAGGGACCCTCT 59.143 50.000 15.27 9.61 30.89 3.69
2391 2451 4.050037 TGTACTAGCTAAGGGACCCTCTA 58.950 47.826 15.27 10.30 30.89 2.43
2392 2452 4.668812 TGTACTAGCTAAGGGACCCTCTAT 59.331 45.833 15.27 0.00 30.89 1.98
2393 2453 4.836255 ACTAGCTAAGGGACCCTCTATT 57.164 45.455 15.27 0.00 30.89 1.73
2394 2454 5.159139 ACTAGCTAAGGGACCCTCTATTT 57.841 43.478 15.27 0.00 30.89 1.40
2395 2455 6.290870 ACTAGCTAAGGGACCCTCTATTTA 57.709 41.667 15.27 0.52 30.89 1.40
2396 2456 6.876580 ACTAGCTAAGGGACCCTCTATTTAT 58.123 40.000 15.27 0.00 30.89 1.40
2397 2457 8.009242 ACTAGCTAAGGGACCCTCTATTTATA 57.991 38.462 15.27 0.00 30.89 0.98
2398 2458 8.462676 ACTAGCTAAGGGACCCTCTATTTATAA 58.537 37.037 15.27 0.00 30.89 0.98
2399 2459 7.800300 AGCTAAGGGACCCTCTATTTATAAG 57.200 40.000 15.27 1.97 30.89 1.73
2400 2460 7.314507 AGCTAAGGGACCCTCTATTTATAAGT 58.685 38.462 15.27 0.00 30.89 2.24
2401 2461 7.795171 AGCTAAGGGACCCTCTATTTATAAGTT 59.205 37.037 15.27 0.00 30.89 2.66
2402 2462 7.878644 GCTAAGGGACCCTCTATTTATAAGTTG 59.121 40.741 15.27 0.00 30.89 3.16
2403 2463 6.189036 AGGGACCCTCTATTTATAAGTTGC 57.811 41.667 7.44 0.00 0.00 4.17
2404 2464 5.073280 AGGGACCCTCTATTTATAAGTTGCC 59.927 44.000 7.44 0.00 0.00 4.52
2405 2465 5.073280 GGGACCCTCTATTTATAAGTTGCCT 59.927 44.000 2.09 0.00 0.00 4.75
2406 2466 5.998363 GGACCCTCTATTTATAAGTTGCCTG 59.002 44.000 0.00 0.00 0.00 4.85
2407 2467 6.183361 GGACCCTCTATTTATAAGTTGCCTGA 60.183 42.308 0.00 0.00 0.00 3.86
2408 2468 7.208064 ACCCTCTATTTATAAGTTGCCTGAA 57.792 36.000 0.00 0.00 0.00 3.02
2409 2469 7.054751 ACCCTCTATTTATAAGTTGCCTGAAC 58.945 38.462 0.00 0.00 34.40 3.18
2499 2559 7.907214 TTTTCTCTATAAGAGCAACTCCAAC 57.093 36.000 0.00 0.00 42.04 3.77
2500 2560 5.250235 TCTCTATAAGAGCAACTCCAACG 57.750 43.478 0.00 0.00 42.04 4.10
2501 2561 4.098044 TCTCTATAAGAGCAACTCCAACGG 59.902 45.833 0.00 0.00 42.04 4.44
2502 2562 2.403252 ATAAGAGCAACTCCAACGGG 57.597 50.000 0.00 0.00 0.00 5.28
2503 2563 0.323629 TAAGAGCAACTCCAACGGGG 59.676 55.000 0.00 0.00 38.37 5.73
2504 2564 3.056328 GAGCAACTCCAACGGGGC 61.056 66.667 0.00 0.00 36.21 5.80
2507 2567 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
2522 2582 3.708734 GACCCAAACGGACGCGTG 61.709 66.667 20.70 5.54 34.64 5.34
2525 2585 3.645975 CCAAACGGACGCGTGCTT 61.646 61.111 28.07 17.23 0.00 3.91
2526 2586 2.326550 CAAACGGACGCGTGCTTT 59.673 55.556 28.07 22.40 0.00 3.51
2527 2587 2.003443 CAAACGGACGCGTGCTTTG 61.003 57.895 28.07 27.40 0.00 2.77
2528 2588 2.466140 AAACGGACGCGTGCTTTGT 61.466 52.632 28.07 16.08 0.00 2.83
2529 2589 2.369477 AAACGGACGCGTGCTTTGTC 62.369 55.000 28.07 6.23 0.00 3.18
2530 2590 4.072088 CGGACGCGTGCTTTGTCC 62.072 66.667 28.07 14.64 46.91 4.02
2531 2591 4.072088 GGACGCGTGCTTTGTCCG 62.072 66.667 24.37 0.00 42.42 4.79
2532 2592 4.719616 GACGCGTGCTTTGTCCGC 62.720 66.667 20.70 0.00 43.74 5.54
2534 2594 4.012895 CGCGTGCTTTGTCCGCTT 62.013 61.111 0.00 0.00 44.92 4.68
2535 2595 2.331451 GCGTGCTTTGTCCGCTTT 59.669 55.556 0.00 0.00 43.81 3.51
2536 2596 1.299089 GCGTGCTTTGTCCGCTTTT 60.299 52.632 0.00 0.00 43.81 2.27
2537 2597 0.869880 GCGTGCTTTGTCCGCTTTTT 60.870 50.000 0.00 0.00 43.81 1.94
2538 2598 0.845768 CGTGCTTTGTCCGCTTTTTG 59.154 50.000 0.00 0.00 0.00 2.44
2539 2599 1.797348 CGTGCTTTGTCCGCTTTTTGT 60.797 47.619 0.00 0.00 0.00 2.83
2540 2600 1.852280 GTGCTTTGTCCGCTTTTTGTC 59.148 47.619 0.00 0.00 0.00 3.18
2541 2601 1.202359 TGCTTTGTCCGCTTTTTGTCC 60.202 47.619 0.00 0.00 0.00 4.02
2542 2602 1.753956 CTTTGTCCGCTTTTTGTCCG 58.246 50.000 0.00 0.00 0.00 4.79
2543 2603 1.064952 CTTTGTCCGCTTTTTGTCCGT 59.935 47.619 0.00 0.00 0.00 4.69
2544 2604 1.096416 TTGTCCGCTTTTTGTCCGTT 58.904 45.000 0.00 0.00 0.00 4.44
2545 2605 1.096416 TGTCCGCTTTTTGTCCGTTT 58.904 45.000 0.00 0.00 0.00 3.60
2546 2606 1.202200 TGTCCGCTTTTTGTCCGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
2547 2607 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
2548 2608 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
2549 2609 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
2550 2610 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
2551 2611 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
2553 2613 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
2554 2614 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
2555 2615 4.629523 GTCCGTTTGGGTCGGCCA 62.630 66.667 9.07 0.00 46.49 5.36
2556 2616 4.323477 TCCGTTTGGGTCGGCCAG 62.323 66.667 9.07 0.00 46.49 4.85
2585 2645 2.949965 CGCGTCCGCATTTTAAAATG 57.050 45.000 28.85 28.85 46.55 2.32
2586 2646 1.581602 CGCGTCCGCATTTTAAAATGG 59.418 47.619 31.89 23.69 44.54 3.16
2593 2653 3.245518 GCATTTTAAAATGGGTCGGCT 57.754 42.857 31.89 1.65 44.54 5.52
2594 2654 3.595173 GCATTTTAAAATGGGTCGGCTT 58.405 40.909 31.89 0.97 44.54 4.35
2595 2655 3.370672 GCATTTTAAAATGGGTCGGCTTG 59.629 43.478 31.89 12.85 44.54 4.01
2596 2656 4.815269 CATTTTAAAATGGGTCGGCTTGA 58.185 39.130 26.58 0.00 41.54 3.02
2597 2657 4.625311 CATTTTAAAATGGGTCGGCTTGAC 59.375 41.667 26.58 1.60 41.54 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.008242 AAAGCAACCCAATGGCACTA 57.992 45.000 0.00 0.00 33.59 2.74
1 2 1.895131 CTAAAGCAACCCAATGGCACT 59.105 47.619 0.00 0.00 33.59 4.40
2 3 1.066929 CCTAAAGCAACCCAATGGCAC 60.067 52.381 0.00 0.00 33.59 5.01
3 4 1.203112 TCCTAAAGCAACCCAATGGCA 60.203 47.619 0.00 0.00 33.59 4.92
4 5 1.555967 TCCTAAAGCAACCCAATGGC 58.444 50.000 0.00 0.00 33.59 4.40
5 6 6.282930 CAAATATCCTAAAGCAACCCAATGG 58.717 40.000 0.00 0.00 37.80 3.16
6 7 6.098124 TCCAAATATCCTAAAGCAACCCAATG 59.902 38.462 0.00 0.00 0.00 2.82
7 8 6.201591 TCCAAATATCCTAAAGCAACCCAAT 58.798 36.000 0.00 0.00 0.00 3.16
8 9 5.584913 TCCAAATATCCTAAAGCAACCCAA 58.415 37.500 0.00 0.00 0.00 4.12
9 10 5.199982 TCCAAATATCCTAAAGCAACCCA 57.800 39.130 0.00 0.00 0.00 4.51
10 11 6.098266 ACATTCCAAATATCCTAAAGCAACCC 59.902 38.462 0.00 0.00 0.00 4.11
11 12 6.980397 CACATTCCAAATATCCTAAAGCAACC 59.020 38.462 0.00 0.00 0.00 3.77
12 13 7.771183 TCACATTCCAAATATCCTAAAGCAAC 58.229 34.615 0.00 0.00 0.00 4.17
13 14 7.953005 TCACATTCCAAATATCCTAAAGCAA 57.047 32.000 0.00 0.00 0.00 3.91
14 15 7.395772 TGTTCACATTCCAAATATCCTAAAGCA 59.604 33.333 0.00 0.00 0.00 3.91
15 16 7.771183 TGTTCACATTCCAAATATCCTAAAGC 58.229 34.615 0.00 0.00 0.00 3.51
16 17 9.740239 CATGTTCACATTCCAAATATCCTAAAG 57.260 33.333 0.00 0.00 33.61 1.85
17 18 9.253832 ACATGTTCACATTCCAAATATCCTAAA 57.746 29.630 0.00 0.00 33.61 1.85
18 19 8.821686 ACATGTTCACATTCCAAATATCCTAA 57.178 30.769 0.00 0.00 33.61 2.69
20 21 8.853126 CATACATGTTCACATTCCAAATATCCT 58.147 33.333 2.30 0.00 33.61 3.24
21 22 8.084073 CCATACATGTTCACATTCCAAATATCC 58.916 37.037 2.30 0.00 33.61 2.59
22 23 8.632679 ACCATACATGTTCACATTCCAAATATC 58.367 33.333 2.30 0.00 33.61 1.63
23 24 8.537728 ACCATACATGTTCACATTCCAAATAT 57.462 30.769 2.30 0.00 33.61 1.28
24 25 7.953005 ACCATACATGTTCACATTCCAAATA 57.047 32.000 2.30 0.00 33.61 1.40
25 26 6.855763 ACCATACATGTTCACATTCCAAAT 57.144 33.333 2.30 0.00 33.61 2.32
26 27 6.041409 ACAACCATACATGTTCACATTCCAAA 59.959 34.615 2.30 0.00 33.61 3.28
27 28 5.538053 ACAACCATACATGTTCACATTCCAA 59.462 36.000 2.30 0.00 33.61 3.53
28 29 5.076182 ACAACCATACATGTTCACATTCCA 58.924 37.500 2.30 0.00 33.61 3.53
29 30 5.643379 ACAACCATACATGTTCACATTCC 57.357 39.130 2.30 0.00 33.61 3.01
30 31 7.697710 CACATACAACCATACATGTTCACATTC 59.302 37.037 2.30 0.00 33.61 2.67
31 32 7.392953 TCACATACAACCATACATGTTCACATT 59.607 33.333 2.30 0.00 33.61 2.71
32 33 6.883756 TCACATACAACCATACATGTTCACAT 59.116 34.615 2.30 0.00 36.96 3.21
33 34 6.234177 TCACATACAACCATACATGTTCACA 58.766 36.000 2.30 0.00 29.31 3.58
34 35 6.593770 TCTCACATACAACCATACATGTTCAC 59.406 38.462 2.30 0.00 29.31 3.18
35 36 6.706295 TCTCACATACAACCATACATGTTCA 58.294 36.000 2.30 0.00 29.31 3.18
36 37 7.010552 GTCTCTCACATACAACCATACATGTTC 59.989 40.741 2.30 0.00 29.31 3.18
37 38 6.818644 GTCTCTCACATACAACCATACATGTT 59.181 38.462 2.30 0.00 29.31 2.71
38 39 6.070824 TGTCTCTCACATACAACCATACATGT 60.071 38.462 2.69 2.69 31.91 3.21
39 40 6.340522 TGTCTCTCACATACAACCATACATG 58.659 40.000 0.00 0.00 0.00 3.21
40 41 6.544928 TGTCTCTCACATACAACCATACAT 57.455 37.500 0.00 0.00 0.00 2.29
41 42 5.993748 TGTCTCTCACATACAACCATACA 57.006 39.130 0.00 0.00 0.00 2.29
42 43 6.341316 ACATGTCTCTCACATACAACCATAC 58.659 40.000 0.00 0.00 44.60 2.39
43 44 6.544928 ACATGTCTCTCACATACAACCATA 57.455 37.500 0.00 0.00 44.60 2.74
44 45 5.426689 ACATGTCTCTCACATACAACCAT 57.573 39.130 0.00 0.00 44.60 3.55
45 46 4.890158 ACATGTCTCTCACATACAACCA 57.110 40.909 0.00 0.00 44.60 3.67
46 47 5.807520 CAGTACATGTCTCTCACATACAACC 59.192 44.000 0.00 0.00 44.60 3.77
47 48 5.807520 CCAGTACATGTCTCTCACATACAAC 59.192 44.000 0.00 0.00 44.60 3.32
48 49 5.624509 GCCAGTACATGTCTCTCACATACAA 60.625 44.000 0.00 0.00 44.60 2.41
49 50 4.142160 GCCAGTACATGTCTCTCACATACA 60.142 45.833 0.00 0.00 44.60 2.29
50 51 4.098654 AGCCAGTACATGTCTCTCACATAC 59.901 45.833 0.00 0.00 44.60 2.39
51 52 4.098501 CAGCCAGTACATGTCTCTCACATA 59.901 45.833 0.00 0.00 44.60 2.29
53 54 2.232208 CAGCCAGTACATGTCTCTCACA 59.768 50.000 0.00 0.00 40.18 3.58
54 55 2.493675 TCAGCCAGTACATGTCTCTCAC 59.506 50.000 0.00 0.00 0.00 3.51
55 56 2.807676 TCAGCCAGTACATGTCTCTCA 58.192 47.619 0.00 0.00 0.00 3.27
56 57 4.118410 CAATCAGCCAGTACATGTCTCTC 58.882 47.826 0.00 0.00 0.00 3.20
57 58 3.681034 GCAATCAGCCAGTACATGTCTCT 60.681 47.826 0.00 0.00 37.23 3.10
58 59 2.611292 GCAATCAGCCAGTACATGTCTC 59.389 50.000 0.00 0.00 37.23 3.36
59 60 2.636830 GCAATCAGCCAGTACATGTCT 58.363 47.619 0.00 0.00 37.23 3.41
71 72 2.613691 CCACATCCAAAAGCAATCAGC 58.386 47.619 0.00 0.00 46.19 4.26
72 73 2.028839 TGCCACATCCAAAAGCAATCAG 60.029 45.455 0.00 0.00 0.00 2.90
73 74 1.969208 TGCCACATCCAAAAGCAATCA 59.031 42.857 0.00 0.00 0.00 2.57
74 75 2.231964 TCTGCCACATCCAAAAGCAATC 59.768 45.455 0.00 0.00 32.14 2.67
75 76 2.250031 TCTGCCACATCCAAAAGCAAT 58.750 42.857 0.00 0.00 32.14 3.56
76 77 1.702182 TCTGCCACATCCAAAAGCAA 58.298 45.000 0.00 0.00 32.14 3.91
77 78 1.546923 CATCTGCCACATCCAAAAGCA 59.453 47.619 0.00 0.00 0.00 3.91
78 79 1.820519 TCATCTGCCACATCCAAAAGC 59.179 47.619 0.00 0.00 0.00 3.51
79 80 3.508793 AGTTCATCTGCCACATCCAAAAG 59.491 43.478 0.00 0.00 0.00 2.27
80 81 3.499338 AGTTCATCTGCCACATCCAAAA 58.501 40.909 0.00 0.00 0.00 2.44
81 82 3.159213 AGTTCATCTGCCACATCCAAA 57.841 42.857 0.00 0.00 0.00 3.28
82 83 2.821378 CAAGTTCATCTGCCACATCCAA 59.179 45.455 0.00 0.00 0.00 3.53
83 84 2.439409 CAAGTTCATCTGCCACATCCA 58.561 47.619 0.00 0.00 0.00 3.41
84 85 1.133790 GCAAGTTCATCTGCCACATCC 59.866 52.381 0.00 0.00 0.00 3.51
85 86 2.089980 AGCAAGTTCATCTGCCACATC 58.910 47.619 0.00 0.00 0.00 3.06
86 87 2.211250 AGCAAGTTCATCTGCCACAT 57.789 45.000 0.00 0.00 0.00 3.21
87 88 2.426522 GTAGCAAGTTCATCTGCCACA 58.573 47.619 0.00 0.00 0.00 4.17
88 89 1.740025 GGTAGCAAGTTCATCTGCCAC 59.260 52.381 0.00 0.00 33.57 5.01
89 90 1.630369 AGGTAGCAAGTTCATCTGCCA 59.370 47.619 0.00 0.00 35.44 4.92
90 91 2.012673 CAGGTAGCAAGTTCATCTGCC 58.987 52.381 0.00 0.00 33.54 4.85
91 92 2.977914 TCAGGTAGCAAGTTCATCTGC 58.022 47.619 0.00 0.00 0.00 4.26
92 93 4.201891 GCAATCAGGTAGCAAGTTCATCTG 60.202 45.833 0.00 0.00 0.00 2.90
93 94 3.944015 GCAATCAGGTAGCAAGTTCATCT 59.056 43.478 0.00 0.00 0.00 2.90
94 95 3.944015 AGCAATCAGGTAGCAAGTTCATC 59.056 43.478 0.00 0.00 0.00 2.92
95 96 3.960571 AGCAATCAGGTAGCAAGTTCAT 58.039 40.909 0.00 0.00 0.00 2.57
96 97 3.423539 AGCAATCAGGTAGCAAGTTCA 57.576 42.857 0.00 0.00 0.00 3.18
97 98 3.623510 GGTAGCAATCAGGTAGCAAGTTC 59.376 47.826 0.00 0.00 45.46 3.01
98 99 3.610911 GGTAGCAATCAGGTAGCAAGTT 58.389 45.455 0.00 0.00 45.46 2.66
99 100 3.268023 GGTAGCAATCAGGTAGCAAGT 57.732 47.619 0.00 0.00 45.46 3.16
103 104 5.215252 TCATAAGGTAGCAATCAGGTAGC 57.785 43.478 0.00 0.00 46.25 3.58
109 110 9.964354 AGCAATAATATCATAAGGTAGCAATCA 57.036 29.630 0.00 0.00 0.00 2.57
111 112 9.964354 TCAGCAATAATATCATAAGGTAGCAAT 57.036 29.630 0.00 0.00 0.00 3.56
112 113 9.791801 TTCAGCAATAATATCATAAGGTAGCAA 57.208 29.630 0.00 0.00 0.00 3.91
113 114 9.791801 TTTCAGCAATAATATCATAAGGTAGCA 57.208 29.630 0.00 0.00 0.00 3.49
128 129 9.624697 GACATAGAACACAATTTTCAGCAATAA 57.375 29.630 0.00 0.00 0.00 1.40
129 130 8.791675 TGACATAGAACACAATTTTCAGCAATA 58.208 29.630 0.00 0.00 0.00 1.90
130 131 7.660112 TGACATAGAACACAATTTTCAGCAAT 58.340 30.769 0.00 0.00 0.00 3.56
131 132 7.036996 TGACATAGAACACAATTTTCAGCAA 57.963 32.000 0.00 0.00 0.00 3.91
132 133 6.631971 TGACATAGAACACAATTTTCAGCA 57.368 33.333 0.00 0.00 0.00 4.41
133 134 9.793252 ATATTGACATAGAACACAATTTTCAGC 57.207 29.630 0.00 0.00 35.19 4.26
188 189 9.545105 TCAAAAATTCAGCAACATTTCATTAGT 57.455 25.926 0.00 0.00 0.00 2.24
193 194 9.719279 GAAATTCAAAAATTCAGCAACATTTCA 57.281 25.926 0.00 0.00 33.93 2.69
194 195 9.940166 AGAAATTCAAAAATTCAGCAACATTTC 57.060 25.926 0.00 0.00 33.93 2.17
195 196 9.724839 CAGAAATTCAAAAATTCAGCAACATTT 57.275 25.926 0.00 0.00 33.93 2.32
196 197 7.858879 GCAGAAATTCAAAAATTCAGCAACATT 59.141 29.630 0.00 0.00 33.93 2.71
197 198 7.227910 AGCAGAAATTCAAAAATTCAGCAACAT 59.772 29.630 7.36 0.00 33.93 2.71
198 199 6.539464 AGCAGAAATTCAAAAATTCAGCAACA 59.461 30.769 7.36 0.00 33.93 3.33
199 200 6.849305 CAGCAGAAATTCAAAAATTCAGCAAC 59.151 34.615 7.36 0.00 33.93 4.17
200 201 6.539464 ACAGCAGAAATTCAAAAATTCAGCAA 59.461 30.769 7.36 0.00 33.93 3.91
201 202 6.050432 ACAGCAGAAATTCAAAAATTCAGCA 58.950 32.000 7.36 0.00 33.93 4.41
202 203 6.535274 ACAGCAGAAATTCAAAAATTCAGC 57.465 33.333 0.00 0.00 33.93 4.26
203 204 7.225145 TGGAACAGCAGAAATTCAAAAATTCAG 59.775 33.333 0.00 0.00 33.93 3.02
204 205 7.046652 TGGAACAGCAGAAATTCAAAAATTCA 58.953 30.769 0.00 0.00 33.93 2.57
205 206 7.481275 TGGAACAGCAGAAATTCAAAAATTC 57.519 32.000 0.00 0.00 33.93 2.17
236 237 9.439500 CCAGTGTTTGATTTGAAATAATGGAAT 57.561 29.630 0.00 0.00 41.84 3.01
237 238 8.646004 TCCAGTGTTTGATTTGAAATAATGGAA 58.354 29.630 8.78 0.00 43.67 3.53
238 239 8.187913 TCCAGTGTTTGATTTGAAATAATGGA 57.812 30.769 7.55 7.55 44.10 3.41
239 240 8.711457 GTTCCAGTGTTTGATTTGAAATAATGG 58.289 33.333 0.00 0.00 41.11 3.16
240 241 8.427012 CGTTCCAGTGTTTGATTTGAAATAATG 58.573 33.333 0.00 0.00 0.00 1.90
241 242 7.598493 CCGTTCCAGTGTTTGATTTGAAATAAT 59.402 33.333 0.00 0.00 0.00 1.28
242 243 6.920758 CCGTTCCAGTGTTTGATTTGAAATAA 59.079 34.615 0.00 0.00 0.00 1.40
243 244 6.263392 TCCGTTCCAGTGTTTGATTTGAAATA 59.737 34.615 0.00 0.00 0.00 1.40
244 245 5.068460 TCCGTTCCAGTGTTTGATTTGAAAT 59.932 36.000 0.00 0.00 0.00 2.17
245 246 4.399618 TCCGTTCCAGTGTTTGATTTGAAA 59.600 37.500 0.00 0.00 0.00 2.69
246 247 3.948473 TCCGTTCCAGTGTTTGATTTGAA 59.052 39.130 0.00 0.00 0.00 2.69
247 248 3.546724 TCCGTTCCAGTGTTTGATTTGA 58.453 40.909 0.00 0.00 0.00 2.69
248 249 3.980646 TCCGTTCCAGTGTTTGATTTG 57.019 42.857 0.00 0.00 0.00 2.32
249 250 4.320202 CGATTCCGTTCCAGTGTTTGATTT 60.320 41.667 0.00 0.00 0.00 2.17
250 251 3.188460 CGATTCCGTTCCAGTGTTTGATT 59.812 43.478 0.00 0.00 0.00 2.57
251 252 2.742053 CGATTCCGTTCCAGTGTTTGAT 59.258 45.455 0.00 0.00 0.00 2.57
252 253 2.139917 CGATTCCGTTCCAGTGTTTGA 58.860 47.619 0.00 0.00 0.00 2.69
253 254 2.096417 GTCGATTCCGTTCCAGTGTTTG 60.096 50.000 0.00 0.00 37.05 2.93
254 255 2.140717 GTCGATTCCGTTCCAGTGTTT 58.859 47.619 0.00 0.00 37.05 2.83
255 256 1.607251 GGTCGATTCCGTTCCAGTGTT 60.607 52.381 0.00 0.00 37.05 3.32
256 257 0.037605 GGTCGATTCCGTTCCAGTGT 60.038 55.000 0.00 0.00 37.05 3.55
257 258 1.076533 CGGTCGATTCCGTTCCAGTG 61.077 60.000 6.32 0.00 44.77 3.66
258 259 1.214589 CGGTCGATTCCGTTCCAGT 59.785 57.895 6.32 0.00 44.77 4.00
259 260 4.088421 CGGTCGATTCCGTTCCAG 57.912 61.111 6.32 0.00 44.77 3.86
284 285 7.221067 CGTTTCTGTGTTTAATAGGTGCAAAAA 59.779 33.333 0.00 0.00 0.00 1.94
285 286 6.693545 CGTTTCTGTGTTTAATAGGTGCAAAA 59.306 34.615 0.00 0.00 0.00 2.44
286 287 6.183360 ACGTTTCTGTGTTTAATAGGTGCAAA 60.183 34.615 0.00 0.00 0.00 3.68
287 288 5.297278 ACGTTTCTGTGTTTAATAGGTGCAA 59.703 36.000 0.00 0.00 0.00 4.08
288 289 4.817464 ACGTTTCTGTGTTTAATAGGTGCA 59.183 37.500 0.00 0.00 0.00 4.57
289 290 5.352643 ACGTTTCTGTGTTTAATAGGTGC 57.647 39.130 0.00 0.00 0.00 5.01
290 291 7.293018 GGTTACGTTTCTGTGTTTAATAGGTG 58.707 38.462 0.00 0.00 0.00 4.00
291 292 6.146021 CGGTTACGTTTCTGTGTTTAATAGGT 59.854 38.462 0.00 0.00 34.81 3.08
292 293 6.365789 TCGGTTACGTTTCTGTGTTTAATAGG 59.634 38.462 0.00 0.00 41.85 2.57
293 294 7.337150 TCGGTTACGTTTCTGTGTTTAATAG 57.663 36.000 0.00 0.00 41.85 1.73
294 295 7.814107 AGATCGGTTACGTTTCTGTGTTTAATA 59.186 33.333 0.00 0.00 41.85 0.98
295 296 6.647895 AGATCGGTTACGTTTCTGTGTTTAAT 59.352 34.615 0.00 0.00 41.85 1.40
296 297 5.984926 AGATCGGTTACGTTTCTGTGTTTAA 59.015 36.000 0.00 0.00 41.85 1.52
297 298 5.403166 CAGATCGGTTACGTTTCTGTGTTTA 59.597 40.000 0.00 0.00 41.71 2.01
298 299 4.210537 CAGATCGGTTACGTTTCTGTGTTT 59.789 41.667 0.00 0.00 41.71 2.83
299 300 3.739300 CAGATCGGTTACGTTTCTGTGTT 59.261 43.478 0.00 0.00 41.71 3.32
300 301 3.314553 CAGATCGGTTACGTTTCTGTGT 58.685 45.455 0.00 0.00 41.71 3.72
301 302 3.972706 CAGATCGGTTACGTTTCTGTG 57.027 47.619 0.00 0.00 41.71 3.66
303 304 4.446385 TGAAACAGATCGGTTACGTTTCTG 59.554 41.667 11.76 15.59 46.58 3.02
304 305 4.624015 TGAAACAGATCGGTTACGTTTCT 58.376 39.130 11.76 0.00 43.61 2.52
305 306 4.977741 TGAAACAGATCGGTTACGTTTC 57.022 40.909 11.76 12.34 43.55 2.78
306 307 5.334569 CCATTGAAACAGATCGGTTACGTTT 60.335 40.000 11.76 4.28 41.85 3.60
307 308 4.153475 CCATTGAAACAGATCGGTTACGTT 59.847 41.667 11.76 0.00 41.85 3.99
308 309 3.682858 CCATTGAAACAGATCGGTTACGT 59.317 43.478 11.76 0.00 41.85 3.57
309 310 3.682858 ACCATTGAAACAGATCGGTTACG 59.317 43.478 11.76 0.00 42.74 3.18
310 311 4.693566 TCACCATTGAAACAGATCGGTTAC 59.306 41.667 11.76 0.00 0.00 2.50
311 312 4.900684 TCACCATTGAAACAGATCGGTTA 58.099 39.130 11.76 0.00 0.00 2.85
312 313 3.750371 TCACCATTGAAACAGATCGGTT 58.250 40.909 5.32 5.32 0.00 4.44
313 314 3.417069 TCACCATTGAAACAGATCGGT 57.583 42.857 0.00 0.00 0.00 4.69
314 315 4.764679 TTTCACCATTGAAACAGATCGG 57.235 40.909 0.00 0.00 45.08 4.18
329 330 2.094752 CACGGAATGGAATGGTTTCACC 60.095 50.000 0.00 0.00 39.22 4.02
330 331 2.817258 TCACGGAATGGAATGGTTTCAC 59.183 45.455 0.00 0.00 33.23 3.18
331 332 2.817258 GTCACGGAATGGAATGGTTTCA 59.183 45.455 0.00 0.00 33.23 2.69
332 333 2.817258 TGTCACGGAATGGAATGGTTTC 59.183 45.455 0.00 0.00 0.00 2.78
333 334 2.819608 CTGTCACGGAATGGAATGGTTT 59.180 45.455 0.00 0.00 0.00 3.27
334 335 2.224769 ACTGTCACGGAATGGAATGGTT 60.225 45.455 0.00 0.00 0.00 3.67
335 336 1.351017 ACTGTCACGGAATGGAATGGT 59.649 47.619 0.00 0.00 0.00 3.55
336 337 2.113860 ACTGTCACGGAATGGAATGG 57.886 50.000 0.00 0.00 0.00 3.16
337 338 2.162208 CCAACTGTCACGGAATGGAATG 59.838 50.000 7.26 0.00 0.00 2.67
338 339 2.224769 ACCAACTGTCACGGAATGGAAT 60.225 45.455 16.94 0.00 0.00 3.01
339 340 1.142060 ACCAACTGTCACGGAATGGAA 59.858 47.619 16.94 0.00 0.00 3.53
340 341 0.762418 ACCAACTGTCACGGAATGGA 59.238 50.000 16.94 0.00 0.00 3.41
341 342 1.535462 GAACCAACTGTCACGGAATGG 59.465 52.381 10.55 10.55 0.00 3.16
342 343 1.535462 GGAACCAACTGTCACGGAATG 59.465 52.381 0.00 0.00 0.00 2.67
343 344 1.420138 AGGAACCAACTGTCACGGAAT 59.580 47.619 0.00 0.00 0.00 3.01
344 345 0.834612 AGGAACCAACTGTCACGGAA 59.165 50.000 0.00 0.00 0.00 4.30
345 346 0.391597 GAGGAACCAACTGTCACGGA 59.608 55.000 0.00 0.00 0.00 4.69
346 347 0.105964 TGAGGAACCAACTGTCACGG 59.894 55.000 0.00 0.00 0.00 4.94
347 348 1.597663 GTTGAGGAACCAACTGTCACG 59.402 52.381 0.00 0.00 42.20 4.35
358 359 1.407618 GGGTGTGTTTGGTTGAGGAAC 59.592 52.381 0.00 0.00 0.00 3.62
359 360 1.286553 AGGGTGTGTTTGGTTGAGGAA 59.713 47.619 0.00 0.00 0.00 3.36
360 361 0.923358 AGGGTGTGTTTGGTTGAGGA 59.077 50.000 0.00 0.00 0.00 3.71
361 362 2.504367 CTAGGGTGTGTTTGGTTGAGG 58.496 52.381 0.00 0.00 0.00 3.86
362 363 2.504367 CCTAGGGTGTGTTTGGTTGAG 58.496 52.381 0.00 0.00 0.00 3.02
363 364 1.477923 GCCTAGGGTGTGTTTGGTTGA 60.478 52.381 11.72 0.00 0.00 3.18
364 365 0.958822 GCCTAGGGTGTGTTTGGTTG 59.041 55.000 11.72 0.00 0.00 3.77
365 366 0.178973 GGCCTAGGGTGTGTTTGGTT 60.179 55.000 11.72 0.00 0.00 3.67
366 367 1.357272 TGGCCTAGGGTGTGTTTGGT 61.357 55.000 11.72 0.00 0.00 3.67
367 368 0.609131 CTGGCCTAGGGTGTGTTTGG 60.609 60.000 11.72 0.00 0.00 3.28
368 369 0.400213 TCTGGCCTAGGGTGTGTTTG 59.600 55.000 11.72 0.00 0.00 2.93
369 370 1.372501 ATCTGGCCTAGGGTGTGTTT 58.627 50.000 11.72 0.00 0.00 2.83
370 371 2.263895 TATCTGGCCTAGGGTGTGTT 57.736 50.000 11.72 0.00 0.00 3.32
371 372 2.090494 AGATATCTGGCCTAGGGTGTGT 60.090 50.000 11.72 0.00 0.00 3.72
372 373 2.564947 GAGATATCTGGCCTAGGGTGTG 59.435 54.545 10.74 0.00 0.00 3.82
373 374 2.452823 AGAGATATCTGGCCTAGGGTGT 59.547 50.000 10.74 0.00 0.00 4.16
374 375 3.182887 AGAGATATCTGGCCTAGGGTG 57.817 52.381 10.74 0.00 0.00 4.61
375 376 3.515562 CAAGAGATATCTGGCCTAGGGT 58.484 50.000 10.74 0.00 0.00 4.34
376 377 2.235898 GCAAGAGATATCTGGCCTAGGG 59.764 54.545 10.74 0.00 30.59 3.53
377 378 2.094286 CGCAAGAGATATCTGGCCTAGG 60.094 54.545 10.74 3.67 43.02 3.02
378 379 2.673610 GCGCAAGAGATATCTGGCCTAG 60.674 54.545 10.74 0.00 43.02 3.02
379 380 1.273606 GCGCAAGAGATATCTGGCCTA 59.726 52.381 10.74 0.00 43.02 3.93
440 441 0.109342 ACTGTGTCCTTTGCTCCCTG 59.891 55.000 0.00 0.00 0.00 4.45
489 490 7.271868 CAGTTTACGTGATAACGTGATGTCTTA 59.728 37.037 18.85 0.00 46.53 2.10
491 492 5.571741 CAGTTTACGTGATAACGTGATGTCT 59.428 40.000 18.85 6.55 46.53 3.41
567 572 2.110899 AGTGAGGAGGAAGACAAGGAGA 59.889 50.000 0.00 0.00 0.00 3.71
630 647 0.585029 CGGCGTCGTAGAGTAACGTC 60.585 60.000 0.00 0.00 43.31 4.34
635 652 1.585267 TTTGGCGGCGTCGTAGAGTA 61.585 55.000 12.58 0.00 36.95 2.59
666 683 3.903207 GCTAGTTCGAGCGTGCGC 61.903 66.667 8.67 8.67 42.33 6.09
686 708 1.471676 GGAAGAGTCGTGCCGATTCAT 60.472 52.381 17.57 9.25 43.32 2.57
803 836 2.223272 GGAAAATGGAAAGCGACCGATC 60.223 50.000 0.00 0.00 0.00 3.69
906 939 1.497161 AGTTTATCTGGGTAGGCGCT 58.503 50.000 7.64 0.00 0.00 5.92
1587 1634 4.473520 AACGCCTGGGCCGATGAG 62.474 66.667 5.99 0.00 37.98 2.90
1631 1678 0.795085 CTACAGCAACAGCAGCAGTC 59.205 55.000 0.00 0.00 33.61 3.51
1639 1686 1.394917 GGAATGTCGCTACAGCAACAG 59.605 52.381 1.08 0.00 41.68 3.16
1699 1754 8.470805 TCTTCTTTCTCTACTACATTGGCTTAG 58.529 37.037 0.00 0.00 0.00 2.18
1726 1781 6.877855 GGTAATAATCCCTCCCTAAATCGAAC 59.122 42.308 0.00 0.00 0.00 3.95
1727 1782 6.559539 TGGTAATAATCCCTCCCTAAATCGAA 59.440 38.462 0.00 0.00 0.00 3.71
1728 1783 6.086095 TGGTAATAATCCCTCCCTAAATCGA 58.914 40.000 0.00 0.00 0.00 3.59
1729 1784 6.368779 TGGTAATAATCCCTCCCTAAATCG 57.631 41.667 0.00 0.00 0.00 3.34
1730 1785 8.615705 AGAATGGTAATAATCCCTCCCTAAATC 58.384 37.037 0.00 0.00 0.00 2.17
1731 1786 8.539856 AGAATGGTAATAATCCCTCCCTAAAT 57.460 34.615 0.00 0.00 0.00 1.40
1732 1787 7.964730 AGAATGGTAATAATCCCTCCCTAAA 57.035 36.000 0.00 0.00 0.00 1.85
1733 1788 7.574750 TGAAGAATGGTAATAATCCCTCCCTAA 59.425 37.037 0.00 0.00 0.00 2.69
1735 1790 5.917087 TGAAGAATGGTAATAATCCCTCCCT 59.083 40.000 0.00 0.00 0.00 4.20
1736 1791 6.004574 GTGAAGAATGGTAATAATCCCTCCC 58.995 44.000 0.00 0.00 0.00 4.30
1737 1792 5.701290 CGTGAAGAATGGTAATAATCCCTCC 59.299 44.000 0.00 0.00 0.00 4.30
1738 1793 5.179555 GCGTGAAGAATGGTAATAATCCCTC 59.820 44.000 0.00 0.00 0.00 4.30
1739 1794 5.063880 GCGTGAAGAATGGTAATAATCCCT 58.936 41.667 0.00 0.00 0.00 4.20
1740 1795 4.215613 GGCGTGAAGAATGGTAATAATCCC 59.784 45.833 0.00 0.00 0.00 3.85
1746 1801 3.627395 TCTGGCGTGAAGAATGGTAAT 57.373 42.857 0.00 0.00 0.00 1.89
1798 1853 6.114187 TCTTGTCTCACTGAATACACCAAT 57.886 37.500 0.00 0.00 0.00 3.16
1824 1879 3.274288 GGAATCTCTGCCAGATCGTTTT 58.726 45.455 0.00 0.00 41.47 2.43
1897 1952 1.301716 TGTCGCTGTTCCTCAAGCC 60.302 57.895 0.00 0.00 0.00 4.35
1906 1961 1.337260 GGAGTGATCAGTGTCGCTGTT 60.337 52.381 8.05 4.99 45.23 3.16
1951 2006 1.267261 GGTACGAGTCTCCATCGGATG 59.733 57.143 11.07 11.07 44.36 3.51
2066 2121 4.406173 CTGCCACGCTCTCGACGT 62.406 66.667 0.00 0.00 46.42 4.34
2111 2171 4.834453 CTCAGGCCAGGCGCAGAG 62.834 72.222 10.83 8.63 40.31 3.35
2133 2193 8.467963 ACCAATTGTGATCATCATAAGCATAA 57.532 30.769 4.43 0.00 31.15 1.90
2186 2246 0.249447 TCAAGTCACCTGTCACGCTG 60.249 55.000 0.00 0.00 0.00 5.18
2189 2249 0.030235 TCGTCAAGTCACCTGTCACG 59.970 55.000 0.00 0.00 0.00 4.35
2190 2250 2.061773 CATCGTCAAGTCACCTGTCAC 58.938 52.381 0.00 0.00 0.00 3.67
2191 2251 1.000843 CCATCGTCAAGTCACCTGTCA 59.999 52.381 0.00 0.00 0.00 3.58
2192 2252 1.272490 TCCATCGTCAAGTCACCTGTC 59.728 52.381 0.00 0.00 0.00 3.51
2193 2253 1.273606 CTCCATCGTCAAGTCACCTGT 59.726 52.381 0.00 0.00 0.00 4.00
2194 2254 1.404717 CCTCCATCGTCAAGTCACCTG 60.405 57.143 0.00 0.00 0.00 4.00
2195 2255 0.898320 CCTCCATCGTCAAGTCACCT 59.102 55.000 0.00 0.00 0.00 4.00
2196 2256 0.895530 TCCTCCATCGTCAAGTCACC 59.104 55.000 0.00 0.00 0.00 4.02
2197 2257 1.732732 CGTCCTCCATCGTCAAGTCAC 60.733 57.143 0.00 0.00 0.00 3.67
2207 2267 2.338500 GAGTGTTTCACGTCCTCCATC 58.662 52.381 0.00 0.00 39.64 3.51
2221 2281 0.395173 AAAACCTGGCGTGGAGTGTT 60.395 50.000 3.31 0.00 0.00 3.32
2281 2341 2.288273 GGATAAGCTAAGATCCGTGCGT 60.288 50.000 6.49 0.00 32.66 5.24
2288 2348 4.308265 GTGAACGGGGATAAGCTAAGATC 58.692 47.826 0.00 0.00 0.00 2.75
2291 2351 2.470821 CGTGAACGGGGATAAGCTAAG 58.529 52.381 0.00 0.00 35.37 2.18
2294 2354 1.153429 GCGTGAACGGGGATAAGCT 60.153 57.895 4.84 0.00 40.23 3.74
2295 2355 2.522638 CGCGTGAACGGGGATAAGC 61.523 63.158 11.64 0.00 46.57 3.09
2296 2356 3.700961 CGCGTGAACGGGGATAAG 58.299 61.111 11.64 0.00 46.57 1.73
2304 2364 1.268896 ACCATACTATCCGCGTGAACG 60.269 52.381 4.92 0.00 43.27 3.95
2305 2365 2.503920 ACCATACTATCCGCGTGAAC 57.496 50.000 4.92 0.00 0.00 3.18
2306 2366 3.057104 CCATACCATACTATCCGCGTGAA 60.057 47.826 4.92 0.00 0.00 3.18
2307 2367 2.490509 CCATACCATACTATCCGCGTGA 59.509 50.000 4.92 1.95 0.00 4.35
2308 2368 2.230508 ACCATACCATACTATCCGCGTG 59.769 50.000 4.92 0.00 0.00 5.34
2309 2369 2.230508 CACCATACCATACTATCCGCGT 59.769 50.000 4.92 0.00 0.00 6.01
2310 2370 2.230508 ACACCATACCATACTATCCGCG 59.769 50.000 0.00 0.00 0.00 6.46
2311 2371 3.006537 ACACACCATACCATACTATCCGC 59.993 47.826 0.00 0.00 0.00 5.54
2312 2372 4.556233 CACACACCATACCATACTATCCG 58.444 47.826 0.00 0.00 0.00 4.18
2313 2373 4.802918 GCCACACACCATACCATACTATCC 60.803 50.000 0.00 0.00 0.00 2.59
2314 2374 4.040461 AGCCACACACCATACCATACTATC 59.960 45.833 0.00 0.00 0.00 2.08
2315 2375 3.973973 AGCCACACACCATACCATACTAT 59.026 43.478 0.00 0.00 0.00 2.12
2316 2376 3.380393 AGCCACACACCATACCATACTA 58.620 45.455 0.00 0.00 0.00 1.82
2317 2377 2.196595 AGCCACACACCATACCATACT 58.803 47.619 0.00 0.00 0.00 2.12
2318 2378 2.710096 AGCCACACACCATACCATAC 57.290 50.000 0.00 0.00 0.00 2.39
2319 2379 3.431068 CGTAAGCCACACACCATACCATA 60.431 47.826 0.00 0.00 0.00 2.74
2320 2380 2.679639 CGTAAGCCACACACCATACCAT 60.680 50.000 0.00 0.00 0.00 3.55
2321 2381 1.338294 CGTAAGCCACACACCATACCA 60.338 52.381 0.00 0.00 0.00 3.25
2322 2382 1.338389 ACGTAAGCCACACACCATACC 60.338 52.381 0.00 0.00 45.62 2.73
2323 2383 1.730064 CACGTAAGCCACACACCATAC 59.270 52.381 0.00 0.00 45.62 2.39
2324 2384 1.345089 ACACGTAAGCCACACACCATA 59.655 47.619 0.00 0.00 45.62 2.74
2325 2385 0.107831 ACACGTAAGCCACACACCAT 59.892 50.000 0.00 0.00 45.62 3.55
2326 2386 0.107606 AACACGTAAGCCACACACCA 60.108 50.000 0.00 0.00 45.62 4.17
2327 2387 0.584876 GAACACGTAAGCCACACACC 59.415 55.000 0.00 0.00 45.62 4.16
2328 2388 0.584876 GGAACACGTAAGCCACACAC 59.415 55.000 0.00 0.00 45.62 3.82
2329 2389 0.178301 TGGAACACGTAAGCCACACA 59.822 50.000 0.00 0.00 45.62 3.72
2330 2390 2.994990 TGGAACACGTAAGCCACAC 58.005 52.632 0.00 0.00 45.62 3.82
2343 2403 2.715046 TCAATGTGGAGAGCATGGAAC 58.285 47.619 0.00 0.00 0.00 3.62
2344 2404 3.084039 GTTCAATGTGGAGAGCATGGAA 58.916 45.455 0.00 0.00 34.82 3.53
2345 2405 2.040145 TGTTCAATGTGGAGAGCATGGA 59.960 45.455 0.00 0.00 0.00 3.41
2346 2406 2.422479 CTGTTCAATGTGGAGAGCATGG 59.578 50.000 0.00 0.00 0.00 3.66
2347 2407 3.079578 ACTGTTCAATGTGGAGAGCATG 58.920 45.455 0.00 0.00 0.00 4.06
2348 2408 3.430042 ACTGTTCAATGTGGAGAGCAT 57.570 42.857 0.00 0.00 0.00 3.79
2349 2409 2.880268 CAACTGTTCAATGTGGAGAGCA 59.120 45.455 0.00 0.00 0.00 4.26
2350 2410 2.880890 ACAACTGTTCAATGTGGAGAGC 59.119 45.455 0.00 0.00 0.00 4.09
2351 2411 5.300752 AGTACAACTGTTCAATGTGGAGAG 58.699 41.667 0.00 0.00 0.00 3.20
2352 2412 5.290493 AGTACAACTGTTCAATGTGGAGA 57.710 39.130 0.00 0.00 0.00 3.71
2353 2413 5.120830 GCTAGTACAACTGTTCAATGTGGAG 59.879 44.000 0.00 0.00 0.00 3.86
2354 2414 4.994852 GCTAGTACAACTGTTCAATGTGGA 59.005 41.667 0.00 0.00 0.00 4.02
2355 2415 4.997395 AGCTAGTACAACTGTTCAATGTGG 59.003 41.667 0.00 0.00 0.00 4.17
2356 2416 7.148573 CCTTAGCTAGTACAACTGTTCAATGTG 60.149 40.741 0.00 0.00 0.00 3.21
2357 2417 6.874134 CCTTAGCTAGTACAACTGTTCAATGT 59.126 38.462 0.00 0.00 0.00 2.71
2358 2418 6.313905 CCCTTAGCTAGTACAACTGTTCAATG 59.686 42.308 0.00 0.00 0.00 2.82
2359 2419 6.212791 TCCCTTAGCTAGTACAACTGTTCAAT 59.787 38.462 0.00 0.00 0.00 2.57
2360 2420 5.541101 TCCCTTAGCTAGTACAACTGTTCAA 59.459 40.000 0.00 0.00 0.00 2.69
2361 2421 5.047519 GTCCCTTAGCTAGTACAACTGTTCA 60.048 44.000 0.00 0.00 0.00 3.18
2362 2422 5.409211 GTCCCTTAGCTAGTACAACTGTTC 58.591 45.833 0.00 0.00 0.00 3.18
2363 2423 4.222366 GGTCCCTTAGCTAGTACAACTGTT 59.778 45.833 0.00 0.00 0.00 3.16
2364 2424 3.768215 GGTCCCTTAGCTAGTACAACTGT 59.232 47.826 0.00 0.00 0.00 3.55
2365 2425 3.132467 GGGTCCCTTAGCTAGTACAACTG 59.868 52.174 0.00 0.00 0.00 3.16
2366 2426 3.012616 AGGGTCCCTTAGCTAGTACAACT 59.987 47.826 3.85 0.00 0.00 3.16
2367 2427 3.372897 AGGGTCCCTTAGCTAGTACAAC 58.627 50.000 3.85 0.00 0.00 3.32
2368 2428 3.271490 AGAGGGTCCCTTAGCTAGTACAA 59.729 47.826 13.13 0.00 31.76 2.41
2369 2429 2.857498 AGAGGGTCCCTTAGCTAGTACA 59.143 50.000 13.13 0.00 31.76 2.90
2370 2430 3.598693 AGAGGGTCCCTTAGCTAGTAC 57.401 52.381 13.13 0.00 31.76 2.73
2371 2431 5.944809 AATAGAGGGTCCCTTAGCTAGTA 57.055 43.478 13.13 0.00 31.76 1.82
2372 2432 4.836255 AATAGAGGGTCCCTTAGCTAGT 57.164 45.455 13.13 5.56 31.76 2.57
2373 2433 8.896722 TTATAAATAGAGGGTCCCTTAGCTAG 57.103 38.462 13.13 0.00 31.76 3.42
2374 2434 8.462676 ACTTATAAATAGAGGGTCCCTTAGCTA 58.537 37.037 13.13 9.59 31.76 3.32
2375 2435 7.314507 ACTTATAAATAGAGGGTCCCTTAGCT 58.685 38.462 13.13 7.40 31.76 3.32
2376 2436 7.556416 ACTTATAAATAGAGGGTCCCTTAGC 57.444 40.000 13.13 0.00 31.76 3.09
2377 2437 7.878644 GCAACTTATAAATAGAGGGTCCCTTAG 59.121 40.741 13.13 1.82 31.76 2.18
2378 2438 7.202158 GGCAACTTATAAATAGAGGGTCCCTTA 60.202 40.741 13.13 7.06 31.76 2.69
2379 2439 6.410504 GGCAACTTATAAATAGAGGGTCCCTT 60.411 42.308 13.13 4.87 31.76 3.95
2380 2440 5.073280 GGCAACTTATAAATAGAGGGTCCCT 59.927 44.000 11.38 11.38 36.03 4.20
2381 2441 5.314529 GGCAACTTATAAATAGAGGGTCCC 58.685 45.833 0.00 0.00 0.00 4.46
2474 2534 7.117812 CGTTGGAGTTGCTCTTATAGAGAAAAA 59.882 37.037 7.85 0.00 41.37 1.94
2475 2535 6.590292 CGTTGGAGTTGCTCTTATAGAGAAAA 59.410 38.462 7.85 0.00 41.37 2.29
2476 2536 6.100004 CGTTGGAGTTGCTCTTATAGAGAAA 58.900 40.000 7.85 0.43 45.07 2.52
2477 2537 5.394224 CCGTTGGAGTTGCTCTTATAGAGAA 60.394 44.000 7.85 0.00 45.07 2.87
2478 2538 4.098044 CCGTTGGAGTTGCTCTTATAGAGA 59.902 45.833 7.85 0.00 45.07 3.10
2479 2539 4.363999 CCGTTGGAGTTGCTCTTATAGAG 58.636 47.826 0.00 0.00 45.04 2.43
2480 2540 3.132289 CCCGTTGGAGTTGCTCTTATAGA 59.868 47.826 0.00 0.00 0.00 1.98
2481 2541 3.458189 CCCGTTGGAGTTGCTCTTATAG 58.542 50.000 0.00 0.00 0.00 1.31
2482 2542 2.169769 CCCCGTTGGAGTTGCTCTTATA 59.830 50.000 0.00 0.00 35.39 0.98
2483 2543 1.065418 CCCCGTTGGAGTTGCTCTTAT 60.065 52.381 0.00 0.00 35.39 1.73
2484 2544 0.323629 CCCCGTTGGAGTTGCTCTTA 59.676 55.000 0.00 0.00 35.39 2.10
2485 2545 1.073199 CCCCGTTGGAGTTGCTCTT 59.927 57.895 0.00 0.00 35.39 2.85
2486 2546 2.750350 CCCCGTTGGAGTTGCTCT 59.250 61.111 0.00 0.00 35.39 4.09
2487 2547 3.056328 GCCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 35.39 4.26
2490 2550 3.047877 GTCGCCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 35.07 3.16
2491 2551 4.324991 GGTCGCCCCGTTGGAGTT 62.325 66.667 0.00 0.00 35.07 3.01
2513 2573 4.072088 GGACAAAGCACGCGTCCG 62.072 66.667 9.86 0.00 39.86 4.79
2514 2574 4.072088 CGGACAAAGCACGCGTCC 62.072 66.667 9.86 0.00 44.79 4.79
2515 2575 4.719616 GCGGACAAAGCACGCGTC 62.720 66.667 9.86 4.43 43.98 5.19
2519 2579 0.845768 CAAAAAGCGGACAAAGCACG 59.154 50.000 0.00 0.00 37.01 5.34
2520 2580 1.852280 GACAAAAAGCGGACAAAGCAC 59.148 47.619 0.00 0.00 37.01 4.40
2521 2581 1.202359 GGACAAAAAGCGGACAAAGCA 60.202 47.619 0.00 0.00 37.01 3.91
2522 2582 1.487482 GGACAAAAAGCGGACAAAGC 58.513 50.000 0.00 0.00 0.00 3.51
2523 2583 1.064952 ACGGACAAAAAGCGGACAAAG 59.935 47.619 0.00 0.00 0.00 2.77
2524 2584 1.096416 ACGGACAAAAAGCGGACAAA 58.904 45.000 0.00 0.00 0.00 2.83
2525 2585 1.096416 AACGGACAAAAAGCGGACAA 58.904 45.000 0.00 0.00 0.00 3.18
2526 2586 1.096416 AAACGGACAAAAAGCGGACA 58.904 45.000 0.00 0.00 0.00 4.02
2527 2587 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
2528 2588 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
2529 2589 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
2530 2590 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
2531 2591 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
2532 2592 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
2565 2625 1.007524 CATTTTAAAATGCGGACGCGC 60.008 47.619 24.00 0.00 45.51 6.86
2566 2626 1.581602 CCATTTTAAAATGCGGACGCG 59.418 47.619 28.17 3.53 43.38 6.01
2567 2627 1.923864 CCCATTTTAAAATGCGGACGC 59.076 47.619 28.17 10.13 43.38 5.19
2568 2628 3.175929 GACCCATTTTAAAATGCGGACG 58.824 45.455 32.81 21.59 43.38 4.79
2569 2629 3.175929 CGACCCATTTTAAAATGCGGAC 58.824 45.455 32.81 28.34 43.38 4.79
2570 2630 2.164624 CCGACCCATTTTAAAATGCGGA 59.835 45.455 32.72 5.31 44.78 5.54
2571 2631 2.535331 CCGACCCATTTTAAAATGCGG 58.465 47.619 28.28 28.28 43.38 5.69
2572 2632 1.923864 GCCGACCCATTTTAAAATGCG 59.076 47.619 28.17 24.84 43.38 4.73
2573 2633 3.245518 AGCCGACCCATTTTAAAATGC 57.754 42.857 28.17 18.71 43.38 3.56
2574 2634 4.625311 GTCAAGCCGACCCATTTTAAAATG 59.375 41.667 27.09 27.09 39.15 2.32
2575 2635 4.816392 GTCAAGCCGACCCATTTTAAAAT 58.184 39.130 7.64 7.64 38.85 1.82
2576 2636 4.245845 GTCAAGCCGACCCATTTTAAAA 57.754 40.909 2.51 2.51 38.85 1.52
2577 2637 3.926821 GTCAAGCCGACCCATTTTAAA 57.073 42.857 0.00 0.00 38.85 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.