Multiple sequence alignment - TraesCS7D01G330200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G330200 chr7D 100.000 2330 0 0 1 2330 421857379 421855050 0.000000e+00 4303
1 TraesCS7D01G330200 chr7B 89.520 2252 127 41 15 2201 439258037 439260244 0.000000e+00 2750
2 TraesCS7D01G330200 chr7A 89.635 1042 54 19 339 1350 511405208 511406225 0.000000e+00 1277
3 TraesCS7D01G330200 chr7A 86.573 499 43 12 1720 2201 511406663 511407154 1.590000e-146 529
4 TraesCS7D01G330200 chr7A 83.495 309 21 16 1416 1721 511406225 511406506 6.390000e-66 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G330200 chr7D 421855050 421857379 2329 True 4303 4303 100.000000 1 2330 1 chr7D.!!$R1 2329
1 TraesCS7D01G330200 chr7B 439258037 439260244 2207 False 2750 2750 89.520000 15 2201 1 chr7B.!!$F1 2186
2 TraesCS7D01G330200 chr7A 511405208 511407154 1946 False 689 1277 86.567667 339 2201 3 chr7A.!!$F1 1862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 336 0.376152 CGACTGCGTGTCTACCGTAT 59.624 55.0 7.83 0.0 43.25 3.06 F
975 1009 0.451783 CAGGCTCGCGGCTTAATTTT 59.548 50.0 17.07 0.0 44.74 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 1312 0.179056 CATGGTGGTGTATCGGGTCC 60.179 60.0 0.0 0.0 0.00 4.46 R
2281 2531 0.241749 TTGAGCAGCAAATTCTGGCG 59.758 50.0 0.0 0.0 34.74 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.590204 CCCACTACAACCAAGGTTAAATAATTT 58.410 33.333 3.82 0.00 36.46 1.82
43 44 9.990360 CCACTACAACCAAGGTTAAATAATTTT 57.010 29.630 3.82 0.00 36.46 1.82
104 106 0.611896 GCACCACACAAATAGGCCCT 60.612 55.000 0.00 0.00 0.00 5.19
161 163 3.679389 AGTTGTGCTTTCTATGACAGGG 58.321 45.455 0.00 0.00 0.00 4.45
167 169 3.327757 TGCTTTCTATGACAGGGAGTGTT 59.672 43.478 0.00 0.00 40.56 3.32
177 179 4.130118 GACAGGGAGTGTTAATATGCTGG 58.870 47.826 0.00 0.00 40.56 4.85
197 199 5.220931 GCTGGTGCTCCTAATTAACTGATTG 60.221 44.000 6.34 0.00 36.03 2.67
229 231 2.450476 ACCAGAACCATGCAATTCTCC 58.550 47.619 7.96 0.00 32.77 3.71
240 242 2.170397 TGCAATTCTCCGGCTCAATCTA 59.830 45.455 0.00 0.00 0.00 1.98
242 244 3.434984 GCAATTCTCCGGCTCAATCTATC 59.565 47.826 0.00 0.00 0.00 2.08
243 245 4.635223 CAATTCTCCGGCTCAATCTATCA 58.365 43.478 0.00 0.00 0.00 2.15
256 258 6.518032 GCTCAATCTATCAGAGGTGCTCATAA 60.518 42.308 0.00 0.00 32.06 1.90
257 259 6.990798 TCAATCTATCAGAGGTGCTCATAAG 58.009 40.000 0.00 0.00 32.06 1.73
265 267 3.052490 AGAGGTGCTCATAAGGGTAGAGT 60.052 47.826 0.00 0.00 32.06 3.24
266 268 3.034635 AGGTGCTCATAAGGGTAGAGTG 58.965 50.000 0.00 0.00 0.00 3.51
268 270 3.958798 GGTGCTCATAAGGGTAGAGTGTA 59.041 47.826 0.00 0.00 0.00 2.90
269 271 4.202131 GGTGCTCATAAGGGTAGAGTGTAC 60.202 50.000 0.00 0.00 0.00 2.90
270 272 4.401519 GTGCTCATAAGGGTAGAGTGTACA 59.598 45.833 0.00 0.00 0.00 2.90
273 275 7.010771 TGCTCATAAGGGTAGAGTGTACATAT 58.989 38.462 0.00 0.00 0.00 1.78
276 278 9.516546 CTCATAAGGGTAGAGTGTACATATGTA 57.483 37.037 11.62 11.62 0.00 2.29
282 284 8.222637 AGGGTAGAGTGTACATATGTATGTGTA 58.777 37.037 18.27 6.80 45.77 2.90
300 302 6.068473 TGTGTATATAGAGGTGCGTGTAAG 57.932 41.667 0.00 0.00 0.00 2.34
317 319 5.337554 GTGTAAGTGTGTATGTATGAGCGA 58.662 41.667 0.00 0.00 0.00 4.93
319 321 4.720649 AAGTGTGTATGTATGAGCGACT 57.279 40.909 0.00 0.00 0.00 4.18
321 323 2.535984 GTGTGTATGTATGAGCGACTGC 59.464 50.000 0.00 0.00 43.24 4.40
334 336 0.376152 CGACTGCGTGTCTACCGTAT 59.624 55.000 7.83 0.00 43.25 3.06
335 337 1.202110 CGACTGCGTGTCTACCGTATT 60.202 52.381 7.83 0.00 43.25 1.89
336 338 2.730090 CGACTGCGTGTCTACCGTATTT 60.730 50.000 7.83 0.00 43.25 1.40
337 339 3.485711 CGACTGCGTGTCTACCGTATTTA 60.486 47.826 7.83 0.00 43.25 1.40
338 340 4.414852 GACTGCGTGTCTACCGTATTTAA 58.585 43.478 2.87 0.00 42.21 1.52
339 341 4.808558 ACTGCGTGTCTACCGTATTTAAA 58.191 39.130 0.00 0.00 0.00 1.52
621 623 1.738830 CACGCCCACGATTAACCGT 60.739 57.895 0.00 0.00 43.93 4.83
691 697 2.041701 GCGACCCCCACTACCTTTATA 58.958 52.381 0.00 0.00 0.00 0.98
703 713 6.295349 CCACTACCTTTATAGTATGCCCTCTG 60.295 46.154 0.00 0.00 33.50 3.35
771 781 3.719924 TGCTTGATCTGTTTTGCTTTGG 58.280 40.909 0.00 0.00 0.00 3.28
933 967 8.240682 CCTTCATAGGATAAGACAACTATCTCG 58.759 40.741 0.00 0.00 45.05 4.04
975 1009 0.451783 CAGGCTCGCGGCTTAATTTT 59.548 50.000 17.07 0.00 44.74 1.82
988 1022 6.089016 GCGGCTTAATTTTTCAAGTAAGGTTC 59.911 38.462 0.00 0.00 39.79 3.62
1008 1042 2.807967 TCTCTGTTTGTTCATGGCTTCG 59.192 45.455 0.00 0.00 0.00 3.79
1047 1081 2.542411 GCTGTTCTTGGTTTGCACTCTG 60.542 50.000 0.00 0.00 0.00 3.35
1095 1129 3.947612 AGGATGATGCAGAAAGGTGAT 57.052 42.857 0.00 0.00 0.00 3.06
1255 1289 4.778415 CTGGTGGAGACGACGCCG 62.778 72.222 3.08 0.00 41.36 6.46
1257 1291 3.823330 GGTGGAGACGACGCCGAT 61.823 66.667 0.00 0.00 38.83 4.18
1365 1399 0.251386 AGACTCTGCGTGAGGGAGAA 60.251 55.000 10.61 0.00 46.72 2.87
1367 1401 1.000955 GACTCTGCGTGAGGGAGAAAA 59.999 52.381 10.61 0.00 46.72 2.29
1368 1402 1.625818 ACTCTGCGTGAGGGAGAAAAT 59.374 47.619 10.61 0.00 46.72 1.82
1369 1403 2.832129 ACTCTGCGTGAGGGAGAAAATA 59.168 45.455 10.61 0.00 46.72 1.40
1370 1404 3.118956 ACTCTGCGTGAGGGAGAAAATAG 60.119 47.826 10.61 0.00 46.72 1.73
1371 1405 2.832129 TCTGCGTGAGGGAGAAAATAGT 59.168 45.455 0.00 0.00 40.50 2.12
1372 1406 3.119101 TCTGCGTGAGGGAGAAAATAGTC 60.119 47.826 0.00 0.00 40.50 2.59
1374 1408 3.007506 TGCGTGAGGGAGAAAATAGTCAA 59.992 43.478 0.00 0.00 0.00 3.18
1396 1452 0.235665 CATGCATGTTATCCGGCGAC 59.764 55.000 18.91 0.00 0.00 5.19
1433 1489 3.481641 CGTACGTACGTCGAGAAGG 57.518 57.895 33.95 8.83 44.13 3.46
1436 1492 1.726791 GTACGTACGTCGAGAAGGTCA 59.273 52.381 26.53 0.00 42.86 4.02
1454 1510 4.765856 AGGTCACAACACCACTAGTAGTAG 59.234 45.833 1.57 2.87 39.16 2.57
1455 1511 4.522022 GGTCACAACACCACTAGTAGTAGT 59.478 45.833 1.57 4.29 40.38 2.73
1456 1512 5.707298 GGTCACAACACCACTAGTAGTAGTA 59.293 44.000 9.94 0.00 37.40 1.82
1457 1513 6.348868 GGTCACAACACCACTAGTAGTAGTAC 60.349 46.154 9.94 0.00 37.40 2.73
1458 1514 5.409520 TCACAACACCACTAGTAGTAGTACG 59.590 44.000 9.94 6.24 37.40 3.67
1476 1532 9.282247 AGTAGTACGTCGAATAAATTAGTTGTG 57.718 33.333 0.00 0.00 0.00 3.33
1490 1546 2.945278 AGTTGTGGTAAAATGCATGCG 58.055 42.857 14.09 0.00 0.00 4.73
1497 1553 3.175929 GGTAAAATGCATGCGTGGTTAC 58.824 45.455 25.11 25.11 0.00 2.50
1512 1569 7.745015 TGCGTGGTTACTAGTTAATTTGAATC 58.255 34.615 0.00 0.00 0.00 2.52
1514 1571 9.090692 GCGTGGTTACTAGTTAATTTGAATCTA 57.909 33.333 0.00 0.00 0.00 1.98
1573 1630 1.561643 ATCGGTGTGATGACCAGAGT 58.438 50.000 0.00 0.00 35.45 3.24
1574 1631 1.338107 TCGGTGTGATGACCAGAGTT 58.662 50.000 0.00 0.00 35.50 3.01
1575 1632 1.272490 TCGGTGTGATGACCAGAGTTC 59.728 52.381 0.00 0.00 35.50 3.01
1576 1633 1.714794 GGTGTGATGACCAGAGTTCG 58.285 55.000 0.00 0.00 35.88 3.95
1577 1634 1.071605 GTGTGATGACCAGAGTTCGC 58.928 55.000 0.00 0.00 0.00 4.70
1578 1635 0.678950 TGTGATGACCAGAGTTCGCA 59.321 50.000 0.00 0.00 0.00 5.10
1579 1636 1.069978 TGTGATGACCAGAGTTCGCAA 59.930 47.619 0.00 0.00 0.00 4.85
1580 1637 2.289631 TGTGATGACCAGAGTTCGCAAT 60.290 45.455 0.00 0.00 0.00 3.56
1581 1638 2.094894 GTGATGACCAGAGTTCGCAATG 59.905 50.000 0.00 0.00 0.00 2.82
1582 1639 2.028203 TGATGACCAGAGTTCGCAATGA 60.028 45.455 0.00 0.00 0.00 2.57
1583 1640 2.542020 TGACCAGAGTTCGCAATGAA 57.458 45.000 0.00 0.00 0.00 2.57
1584 1641 2.844946 TGACCAGAGTTCGCAATGAAA 58.155 42.857 0.00 0.00 38.60 2.69
1585 1642 3.210227 TGACCAGAGTTCGCAATGAAAA 58.790 40.909 0.00 0.00 38.60 2.29
1586 1643 3.629855 TGACCAGAGTTCGCAATGAAAAA 59.370 39.130 0.00 0.00 38.60 1.94
1619 1676 6.775629 ACAAGCTAGTTGGGTTGAGATTTTAA 59.224 34.615 13.23 0.00 44.44 1.52
1746 1961 6.540438 AAAAAGGACCGTCTATACATCAGA 57.460 37.500 0.00 0.00 0.00 3.27
1748 1963 5.713792 AAGGACCGTCTATACATCAGATG 57.286 43.478 9.03 9.03 0.00 2.90
1752 1967 5.335269 GGACCGTCTATACATCAGATGACTG 60.335 48.000 17.81 3.57 44.66 3.51
1843 2058 5.479375 ACATGTTCATCTTCAAGGCTTCAAT 59.521 36.000 0.00 0.00 0.00 2.57
1850 2065 5.745312 TCTTCAAGGCTTCAATCACTCTA 57.255 39.130 0.00 0.00 0.00 2.43
1851 2066 5.728471 TCTTCAAGGCTTCAATCACTCTAG 58.272 41.667 0.00 0.00 0.00 2.43
1898 2113 1.951923 TACCCCGCTCCATCCACCTA 61.952 60.000 0.00 0.00 0.00 3.08
1955 2185 3.003173 CTCGCCCTCCCCTCAACA 61.003 66.667 0.00 0.00 0.00 3.33
1969 2199 3.308688 CCCTCAACATCAACCTCCTTCAT 60.309 47.826 0.00 0.00 0.00 2.57
1986 2216 1.068402 TCATTGTCATTGCTTGCCACG 60.068 47.619 0.00 0.00 0.00 4.94
2009 2239 0.105039 GTGACCATCCCTCTAAGCGG 59.895 60.000 0.00 0.00 0.00 5.52
2012 2242 2.143419 CCATCCCTCTAAGCGGCCT 61.143 63.158 0.00 0.00 0.00 5.19
2085 2322 4.111577 TCCATCTTGGATTAGGTCTTGGT 58.888 43.478 0.00 0.00 42.67 3.67
2107 2344 0.244721 GCCCTCGAGCAAAGCAAAAT 59.755 50.000 6.99 0.00 0.00 1.82
2153 2403 4.273235 CAGGCATACGATGATTAGCAAACA 59.727 41.667 0.00 0.00 0.00 2.83
2201 2451 7.701445 AGATTTTCATGAAAGATCGAATCACC 58.299 34.615 19.64 0.00 0.00 4.02
2202 2452 6.816134 TTTTCATGAAAGATCGAATCACCA 57.184 33.333 19.64 0.00 0.00 4.17
2203 2453 6.426980 TTTCATGAAAGATCGAATCACCAG 57.573 37.500 16.91 0.00 0.00 4.00
2204 2454 5.343307 TCATGAAAGATCGAATCACCAGA 57.657 39.130 0.00 0.00 0.00 3.86
2205 2455 5.733676 TCATGAAAGATCGAATCACCAGAA 58.266 37.500 0.00 0.00 0.00 3.02
2206 2456 6.172630 TCATGAAAGATCGAATCACCAGAAA 58.827 36.000 0.00 0.00 0.00 2.52
2207 2457 6.825213 TCATGAAAGATCGAATCACCAGAAAT 59.175 34.615 0.00 0.00 0.00 2.17
2208 2458 6.668541 TGAAAGATCGAATCACCAGAAATC 57.331 37.500 0.00 0.00 0.00 2.17
2209 2459 6.172630 TGAAAGATCGAATCACCAGAAATCA 58.827 36.000 0.00 0.00 0.00 2.57
2210 2460 6.825213 TGAAAGATCGAATCACCAGAAATCAT 59.175 34.615 0.00 0.00 0.00 2.45
2211 2461 6.857777 AAGATCGAATCACCAGAAATCATC 57.142 37.500 0.00 0.00 0.00 2.92
2212 2462 6.172136 AGATCGAATCACCAGAAATCATCT 57.828 37.500 0.00 0.00 39.68 2.90
2213 2463 6.590068 AGATCGAATCACCAGAAATCATCTT 58.410 36.000 0.00 0.00 35.73 2.40
2214 2464 6.482641 AGATCGAATCACCAGAAATCATCTTG 59.517 38.462 0.00 0.00 35.73 3.02
2215 2465 5.733676 TCGAATCACCAGAAATCATCTTGA 58.266 37.500 0.00 0.00 35.73 3.02
2216 2466 5.814188 TCGAATCACCAGAAATCATCTTGAG 59.186 40.000 0.00 0.00 35.73 3.02
2217 2467 5.583854 CGAATCACCAGAAATCATCTTGAGT 59.416 40.000 0.00 0.00 35.73 3.41
2218 2468 6.456584 CGAATCACCAGAAATCATCTTGAGTG 60.457 42.308 0.00 0.00 35.73 3.51
2219 2469 5.233083 TCACCAGAAATCATCTTGAGTGT 57.767 39.130 0.00 0.00 35.73 3.55
2220 2470 4.999311 TCACCAGAAATCATCTTGAGTGTG 59.001 41.667 0.00 0.00 35.73 3.82
2221 2471 4.758674 CACCAGAAATCATCTTGAGTGTGT 59.241 41.667 0.00 0.00 35.73 3.72
2222 2472 5.934043 CACCAGAAATCATCTTGAGTGTGTA 59.066 40.000 0.00 0.00 35.73 2.90
2223 2473 5.934625 ACCAGAAATCATCTTGAGTGTGTAC 59.065 40.000 0.00 0.00 35.73 2.90
2224 2474 5.062683 CCAGAAATCATCTTGAGTGTGTACG 59.937 44.000 0.00 0.00 35.73 3.67
2225 2475 4.627467 AGAAATCATCTTGAGTGTGTACGC 59.373 41.667 0.00 0.00 33.39 4.42
2226 2476 3.876274 ATCATCTTGAGTGTGTACGCT 57.124 42.857 8.10 0.00 39.79 5.07
2227 2477 3.660501 TCATCTTGAGTGTGTACGCTT 57.339 42.857 8.10 0.00 36.74 4.68
2228 2478 3.317150 TCATCTTGAGTGTGTACGCTTG 58.683 45.455 8.10 0.00 36.74 4.01
2229 2479 1.497991 TCTTGAGTGTGTACGCTTGC 58.502 50.000 8.10 0.00 36.74 4.01
2230 2480 1.068588 TCTTGAGTGTGTACGCTTGCT 59.931 47.619 8.10 3.42 36.74 3.91
2231 2481 2.295070 TCTTGAGTGTGTACGCTTGCTA 59.705 45.455 8.10 0.00 36.74 3.49
2232 2482 2.804697 TGAGTGTGTACGCTTGCTAA 57.195 45.000 8.10 0.00 36.74 3.09
2233 2483 3.100658 TGAGTGTGTACGCTTGCTAAA 57.899 42.857 8.10 0.00 36.74 1.85
2234 2484 3.459145 TGAGTGTGTACGCTTGCTAAAA 58.541 40.909 8.10 0.00 36.74 1.52
2235 2485 4.062293 TGAGTGTGTACGCTTGCTAAAAT 58.938 39.130 8.10 0.00 36.74 1.82
2236 2486 4.513692 TGAGTGTGTACGCTTGCTAAAATT 59.486 37.500 8.10 0.00 36.74 1.82
2237 2487 5.008217 TGAGTGTGTACGCTTGCTAAAATTT 59.992 36.000 8.10 0.00 36.74 1.82
2238 2488 5.212194 AGTGTGTACGCTTGCTAAAATTTG 58.788 37.500 8.10 0.00 31.75 2.32
2239 2489 4.973663 GTGTGTACGCTTGCTAAAATTTGT 59.026 37.500 8.10 0.00 0.00 2.83
2240 2490 5.457473 GTGTGTACGCTTGCTAAAATTTGTT 59.543 36.000 8.10 0.00 0.00 2.83
2241 2491 5.457148 TGTGTACGCTTGCTAAAATTTGTTG 59.543 36.000 8.10 0.00 0.00 3.33
2242 2492 4.979197 TGTACGCTTGCTAAAATTTGTTGG 59.021 37.500 0.00 0.00 0.00 3.77
2243 2493 3.389221 ACGCTTGCTAAAATTTGTTGGG 58.611 40.909 0.00 0.00 0.00 4.12
2244 2494 2.157474 CGCTTGCTAAAATTTGTTGGGC 59.843 45.455 0.00 0.00 0.00 5.36
2245 2495 2.483877 GCTTGCTAAAATTTGTTGGGCC 59.516 45.455 0.00 0.00 0.00 5.80
2246 2496 3.737850 CTTGCTAAAATTTGTTGGGCCA 58.262 40.909 0.00 0.00 0.00 5.36
2247 2497 4.325972 CTTGCTAAAATTTGTTGGGCCAT 58.674 39.130 7.26 0.00 0.00 4.40
2248 2498 3.936564 TGCTAAAATTTGTTGGGCCATC 58.063 40.909 7.26 7.51 0.00 3.51
2249 2499 3.582208 TGCTAAAATTTGTTGGGCCATCT 59.418 39.130 7.26 0.00 0.00 2.90
2250 2500 3.934579 GCTAAAATTTGTTGGGCCATCTG 59.065 43.478 7.26 0.00 0.00 2.90
2251 2501 4.322650 GCTAAAATTTGTTGGGCCATCTGA 60.323 41.667 7.26 0.00 0.00 3.27
2252 2502 3.967332 AAATTTGTTGGGCCATCTGAG 57.033 42.857 7.26 0.00 0.00 3.35
2253 2503 1.856629 ATTTGTTGGGCCATCTGAGG 58.143 50.000 7.26 0.00 0.00 3.86
2254 2504 0.251742 TTTGTTGGGCCATCTGAGGG 60.252 55.000 7.26 3.51 0.00 4.30
2263 2513 2.725221 CCATCTGAGGGCTAGCTTTT 57.275 50.000 15.72 0.00 0.00 2.27
2264 2514 2.295885 CCATCTGAGGGCTAGCTTTTG 58.704 52.381 15.72 2.03 0.00 2.44
2279 2529 4.568152 GCTTTTGCTTTGTCTAGGTGAA 57.432 40.909 0.00 0.00 43.35 3.18
2280 2530 4.932146 GCTTTTGCTTTGTCTAGGTGAAA 58.068 39.130 0.00 0.00 43.35 2.69
2281 2531 4.740205 GCTTTTGCTTTGTCTAGGTGAAAC 59.260 41.667 0.00 0.00 43.35 2.78
2282 2532 4.545823 TTTGCTTTGTCTAGGTGAAACG 57.454 40.909 0.00 0.00 38.12 3.60
2283 2533 1.871039 TGCTTTGTCTAGGTGAAACGC 59.129 47.619 0.00 0.00 38.12 4.84
2284 2534 1.197036 GCTTTGTCTAGGTGAAACGCC 59.803 52.381 0.00 0.00 38.12 5.68
2285 2535 2.489971 CTTTGTCTAGGTGAAACGCCA 58.510 47.619 4.21 0.00 38.12 5.69
2286 2536 2.163818 TTGTCTAGGTGAAACGCCAG 57.836 50.000 4.21 0.60 38.12 4.85
2287 2537 1.334160 TGTCTAGGTGAAACGCCAGA 58.666 50.000 4.21 2.69 38.12 3.86
2288 2538 1.689813 TGTCTAGGTGAAACGCCAGAA 59.310 47.619 4.21 0.00 38.12 3.02
2289 2539 2.301870 TGTCTAGGTGAAACGCCAGAAT 59.698 45.455 4.21 0.00 38.12 2.40
2290 2540 3.244422 TGTCTAGGTGAAACGCCAGAATT 60.244 43.478 4.21 0.00 38.12 2.17
2291 2541 3.751698 GTCTAGGTGAAACGCCAGAATTT 59.248 43.478 4.21 0.00 38.12 1.82
2292 2542 3.751175 TCTAGGTGAAACGCCAGAATTTG 59.249 43.478 4.21 0.00 38.12 2.32
2293 2543 1.000274 AGGTGAAACGCCAGAATTTGC 60.000 47.619 4.21 0.00 38.12 3.68
2294 2544 1.000274 GGTGAAACGCCAGAATTTGCT 60.000 47.619 0.00 0.00 38.12 3.91
2295 2545 2.053627 GTGAAACGCCAGAATTTGCTG 58.946 47.619 0.00 0.00 35.66 4.41
2296 2546 1.063031 GAAACGCCAGAATTTGCTGC 58.937 50.000 0.00 0.00 34.56 5.25
2297 2547 0.675633 AAACGCCAGAATTTGCTGCT 59.324 45.000 0.00 0.00 34.56 4.24
2298 2548 0.242017 AACGCCAGAATTTGCTGCTC 59.758 50.000 0.00 0.00 34.56 4.26
2299 2549 0.890542 ACGCCAGAATTTGCTGCTCA 60.891 50.000 0.00 0.00 34.56 4.26
2300 2550 0.241749 CGCCAGAATTTGCTGCTCAA 59.758 50.000 0.00 0.00 34.56 3.02
2302 2552 2.758009 GCCAGAATTTGCTGCTCAAAA 58.242 42.857 0.00 0.00 46.60 2.44
2303 2553 3.332034 GCCAGAATTTGCTGCTCAAAAT 58.668 40.909 0.00 0.00 46.60 1.82
2304 2554 3.749609 GCCAGAATTTGCTGCTCAAAATT 59.250 39.130 8.38 8.38 46.60 1.82
2305 2555 4.931002 GCCAGAATTTGCTGCTCAAAATTA 59.069 37.500 8.56 0.00 46.60 1.40
2306 2556 5.409214 GCCAGAATTTGCTGCTCAAAATTAA 59.591 36.000 8.56 0.00 46.60 1.40
2307 2557 6.073112 GCCAGAATTTGCTGCTCAAAATTAAA 60.073 34.615 8.56 0.00 46.60 1.52
2308 2558 7.520292 GCCAGAATTTGCTGCTCAAAATTAAAA 60.520 33.333 8.56 0.00 46.60 1.52
2309 2559 7.799914 CCAGAATTTGCTGCTCAAAATTAAAAC 59.200 33.333 8.56 0.00 46.60 2.43
2310 2560 8.336806 CAGAATTTGCTGCTCAAAATTAAAACA 58.663 29.630 8.56 0.00 46.60 2.83
2311 2561 8.891720 AGAATTTGCTGCTCAAAATTAAAACAA 58.108 25.926 8.56 0.00 46.60 2.83
2312 2562 9.667989 GAATTTGCTGCTCAAAATTAAAACAAT 57.332 25.926 8.56 0.00 46.60 2.71
2313 2563 9.453325 AATTTGCTGCTCAAAATTAAAACAATG 57.547 25.926 0.00 0.00 46.60 2.82
2314 2564 7.551035 TTGCTGCTCAAAATTAAAACAATGT 57.449 28.000 0.00 0.00 0.00 2.71
2315 2565 8.654230 TTGCTGCTCAAAATTAAAACAATGTA 57.346 26.923 0.00 0.00 0.00 2.29
2316 2566 8.830201 TGCTGCTCAAAATTAAAACAATGTAT 57.170 26.923 0.00 0.00 0.00 2.29
2317 2567 8.924691 TGCTGCTCAAAATTAAAACAATGTATC 58.075 29.630 0.00 0.00 0.00 2.24
2318 2568 9.143631 GCTGCTCAAAATTAAAACAATGTATCT 57.856 29.630 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.791320 AGTGGGATAAGGAGTGTCTTCA 58.209 45.455 0.00 0.00 0.00 3.02
1 2 4.710375 TGTAGTGGGATAAGGAGTGTCTTC 59.290 45.833 0.00 0.00 0.00 2.87
3 4 4.332683 TGTAGTGGGATAAGGAGTGTCT 57.667 45.455 0.00 0.00 0.00 3.41
5 6 3.518303 GGTTGTAGTGGGATAAGGAGTGT 59.482 47.826 0.00 0.00 0.00 3.55
6 7 3.517901 TGGTTGTAGTGGGATAAGGAGTG 59.482 47.826 0.00 0.00 0.00 3.51
7 8 3.798515 TGGTTGTAGTGGGATAAGGAGT 58.201 45.455 0.00 0.00 0.00 3.85
10 11 3.265995 ACCTTGGTTGTAGTGGGATAAGG 59.734 47.826 0.00 0.00 39.38 2.69
11 12 4.569719 ACCTTGGTTGTAGTGGGATAAG 57.430 45.455 0.00 0.00 0.00 1.73
12 13 6.451292 TTAACCTTGGTTGTAGTGGGATAA 57.549 37.500 14.67 0.00 0.00 1.75
13 14 6.451292 TTTAACCTTGGTTGTAGTGGGATA 57.549 37.500 14.67 0.00 0.00 2.59
104 106 9.515226 GCCTGTAATAAATCCATAAATCCAGTA 57.485 33.333 0.00 0.00 0.00 2.74
161 163 3.561725 GGAGCACCAGCATATTAACACTC 59.438 47.826 0.00 0.00 45.49 3.51
167 169 7.661437 CAGTTAATTAGGAGCACCAGCATATTA 59.339 37.037 2.07 0.00 45.49 0.98
177 179 5.355350 AGTGCAATCAGTTAATTAGGAGCAC 59.645 40.000 0.00 0.00 46.34 4.40
229 231 2.865670 GCACCTCTGATAGATTGAGCCG 60.866 54.545 0.00 0.00 0.00 5.52
240 242 2.769209 ACCCTTATGAGCACCTCTGAT 58.231 47.619 0.00 0.00 0.00 2.90
242 244 3.300388 TCTACCCTTATGAGCACCTCTG 58.700 50.000 0.00 0.00 0.00 3.35
243 245 3.052490 ACTCTACCCTTATGAGCACCTCT 60.052 47.826 0.00 0.00 0.00 3.69
256 258 7.067421 ACACATACATATGTACACTCTACCCT 58.933 38.462 17.69 0.00 44.57 4.34
257 259 7.286215 ACACATACATATGTACACTCTACCC 57.714 40.000 17.69 0.00 44.57 3.69
269 271 8.406297 ACGCACCTCTATATACACATACATATG 58.594 37.037 0.00 0.00 39.55 1.78
270 272 8.406297 CACGCACCTCTATATACACATACATAT 58.594 37.037 0.00 0.00 0.00 1.78
273 275 5.533528 ACACGCACCTCTATATACACATACA 59.466 40.000 0.00 0.00 0.00 2.29
276 278 6.264744 ACTTACACGCACCTCTATATACACAT 59.735 38.462 0.00 0.00 0.00 3.21
279 281 5.591472 ACACTTACACGCACCTCTATATACA 59.409 40.000 0.00 0.00 0.00 2.29
282 284 4.401519 ACACACTTACACGCACCTCTATAT 59.598 41.667 0.00 0.00 0.00 0.86
288 290 2.036733 ACATACACACTTACACGCACCT 59.963 45.455 0.00 0.00 0.00 4.00
300 302 2.535984 GCAGTCGCTCATACATACACAC 59.464 50.000 0.00 0.00 34.30 3.82
319 321 5.389725 GCTTTTTAAATACGGTAGACACGCA 60.390 40.000 0.00 0.00 34.00 5.24
321 323 6.011277 GTGCTTTTTAAATACGGTAGACACG 58.989 40.000 0.00 0.00 37.36 4.49
324 326 8.471361 AGTAGTGCTTTTTAAATACGGTAGAC 57.529 34.615 0.00 0.00 0.00 2.59
326 328 7.546667 TGGAGTAGTGCTTTTTAAATACGGTAG 59.453 37.037 0.00 0.00 0.00 3.18
330 332 8.025243 TCTTGGAGTAGTGCTTTTTAAATACG 57.975 34.615 0.00 0.00 0.00 3.06
334 336 7.001674 TGGATCTTGGAGTAGTGCTTTTTAAA 58.998 34.615 0.00 0.00 0.00 1.52
335 337 6.430000 GTGGATCTTGGAGTAGTGCTTTTTAA 59.570 38.462 0.00 0.00 0.00 1.52
336 338 5.938125 GTGGATCTTGGAGTAGTGCTTTTTA 59.062 40.000 0.00 0.00 0.00 1.52
337 339 4.762251 GTGGATCTTGGAGTAGTGCTTTTT 59.238 41.667 0.00 0.00 0.00 1.94
338 340 4.327680 GTGGATCTTGGAGTAGTGCTTTT 58.672 43.478 0.00 0.00 0.00 2.27
339 341 3.307762 GGTGGATCTTGGAGTAGTGCTTT 60.308 47.826 0.00 0.00 0.00 3.51
518 520 2.170166 TGTTTGCTTATGGAGGCCAAG 58.830 47.619 5.01 0.00 36.95 3.61
621 623 5.061853 GCATTCAGATAAATCCAGAGCTGA 58.938 41.667 0.00 0.00 0.00 4.26
703 713 3.623863 CGACGATCTTTTAGAGAGAGGC 58.376 50.000 0.00 0.00 37.93 4.70
744 754 4.110482 GCAAAACAGATCAAGCATCCATC 58.890 43.478 0.00 0.00 30.71 3.51
745 755 3.767673 AGCAAAACAGATCAAGCATCCAT 59.232 39.130 0.00 0.00 30.71 3.41
746 756 3.159472 AGCAAAACAGATCAAGCATCCA 58.841 40.909 0.00 0.00 30.71 3.41
747 757 3.863142 AGCAAAACAGATCAAGCATCC 57.137 42.857 0.00 0.00 30.71 3.51
771 781 6.528072 GTGGCTTAAATACTCAGCAAAACATC 59.472 38.462 0.00 0.00 35.05 3.06
926 960 4.808414 TTGCTATCAATCCCCGAGATAG 57.192 45.455 0.00 0.00 42.48 2.08
975 1009 6.882140 TGAACAAACAGAGAACCTTACTTGAA 59.118 34.615 0.00 0.00 0.00 2.69
988 1022 2.549754 ACGAAGCCATGAACAAACAGAG 59.450 45.455 0.00 0.00 0.00 3.35
1008 1042 4.148825 AGCACGGCCATCCTCGAC 62.149 66.667 2.24 0.00 0.00 4.20
1047 1081 0.105039 CCATCTTCCTAGCGACACCC 59.895 60.000 0.00 0.00 0.00 4.61
1095 1129 1.074727 CCTCCATTACCCACCACAACA 59.925 52.381 0.00 0.00 0.00 3.33
1250 1284 3.537874 GCACCTCCCTATCGGCGT 61.538 66.667 6.85 0.00 0.00 5.68
1254 1288 3.142393 CCTGGCACCTCCCTATCG 58.858 66.667 0.00 0.00 0.00 2.92
1255 1289 2.832498 GCCTGGCACCTCCCTATC 59.168 66.667 15.17 0.00 0.00 2.08
1278 1312 0.179056 CATGGTGGTGTATCGGGTCC 60.179 60.000 0.00 0.00 0.00 4.46
1365 1399 7.149973 GGATAACATGCATGCATTGACTATTT 58.850 34.615 30.32 15.57 33.90 1.40
1367 1401 5.106436 CGGATAACATGCATGCATTGACTAT 60.106 40.000 30.32 21.24 33.90 2.12
1368 1402 4.213906 CGGATAACATGCATGCATTGACTA 59.786 41.667 30.32 17.88 33.90 2.59
1369 1403 3.004002 CGGATAACATGCATGCATTGACT 59.996 43.478 30.32 15.42 33.90 3.41
1370 1404 3.302555 CGGATAACATGCATGCATTGAC 58.697 45.455 30.32 18.10 33.90 3.18
1371 1405 2.293955 CCGGATAACATGCATGCATTGA 59.706 45.455 30.32 18.05 33.90 2.57
1372 1406 2.668250 CCGGATAACATGCATGCATTG 58.332 47.619 30.32 24.85 33.90 2.82
1374 1408 0.599558 GCCGGATAACATGCATGCAT 59.400 50.000 27.46 27.46 37.08 3.96
1397 1453 2.154569 GCGGGCACGTACGTAAGTC 61.155 63.158 22.34 11.37 46.70 3.01
1399 1455 2.576287 TACGCGGGCACGTACGTAAG 62.576 60.000 22.34 11.14 46.19 2.34
1400 1456 2.681894 TACGCGGGCACGTACGTAA 61.682 57.895 22.34 3.39 46.19 3.18
1427 1483 2.622064 AGTGGTGTTGTGACCTTCTC 57.378 50.000 0.00 0.00 36.88 2.87
1430 1486 3.965347 ACTACTAGTGGTGTTGTGACCTT 59.035 43.478 11.56 0.00 36.88 3.50
1431 1487 3.573695 ACTACTAGTGGTGTTGTGACCT 58.426 45.455 11.56 0.00 36.88 3.85
1433 1489 5.702349 ACTACTACTAGTGGTGTTGTGAC 57.298 43.478 21.07 0.00 38.55 3.67
1436 1492 5.308825 ACGTACTACTACTAGTGGTGTTGT 58.691 41.667 21.07 17.36 40.28 3.32
1454 1510 7.281991 ACCACAACTAATTTATTCGACGTAC 57.718 36.000 0.00 0.00 0.00 3.67
1455 1511 8.978564 TTACCACAACTAATTTATTCGACGTA 57.021 30.769 0.00 0.00 0.00 3.57
1456 1512 7.887996 TTACCACAACTAATTTATTCGACGT 57.112 32.000 0.00 0.00 0.00 4.34
1457 1513 9.763465 ATTTTACCACAACTAATTTATTCGACG 57.237 29.630 0.00 0.00 0.00 5.12
1470 1526 2.295909 ACGCATGCATTTTACCACAACT 59.704 40.909 19.57 0.00 0.00 3.16
1476 1532 2.362169 AACCACGCATGCATTTTACC 57.638 45.000 19.57 0.00 0.00 2.85
1512 1569 0.452184 ACGTCCGCTCACACAGATAG 59.548 55.000 0.00 0.00 0.00 2.08
1514 1571 1.080501 CACGTCCGCTCACACAGAT 60.081 57.895 0.00 0.00 0.00 2.90
1516 1573 2.734723 CCACGTCCGCTCACACAG 60.735 66.667 0.00 0.00 0.00 3.66
1583 1640 4.754322 CAACTAGCTTGTGGTTGGTTTTT 58.246 39.130 0.36 0.00 42.48 1.94
1584 1641 4.385358 CAACTAGCTTGTGGTTGGTTTT 57.615 40.909 0.36 0.00 42.48 2.43
1843 2058 3.622704 CGGGAGGAAGAAGACTAGAGTGA 60.623 52.174 0.00 0.00 0.00 3.41
1850 2065 2.038689 GGTTTTCGGGAGGAAGAAGACT 59.961 50.000 0.00 0.00 35.70 3.24
1851 2066 2.424557 GGTTTTCGGGAGGAAGAAGAC 58.575 52.381 0.00 0.00 35.70 3.01
1955 2185 4.159135 GCAATGACAATGAAGGAGGTTGAT 59.841 41.667 0.00 0.00 0.00 2.57
1986 2216 1.335132 TTAGAGGGATGGTCACGGCC 61.335 60.000 0.00 0.00 0.00 6.13
1991 2221 1.686325 GCCGCTTAGAGGGATGGTCA 61.686 60.000 3.83 0.00 0.00 4.02
2009 2239 4.643387 AGGTTGACGGGTGCAGGC 62.643 66.667 0.00 0.00 0.00 4.85
2012 2242 3.414136 AAGCAGGTTGACGGGTGCA 62.414 57.895 0.00 0.00 38.44 4.57
2153 2403 1.148273 TGCCTGCCAGTTTCTTCGT 59.852 52.632 0.00 0.00 0.00 3.85
2201 2451 5.445142 GCGTACACACTCAAGATGATTTCTG 60.445 44.000 0.00 0.00 33.93 3.02
2202 2452 4.627467 GCGTACACACTCAAGATGATTTCT 59.373 41.667 0.00 0.00 35.70 2.52
2203 2453 4.627467 AGCGTACACACTCAAGATGATTTC 59.373 41.667 0.00 0.00 0.00 2.17
2204 2454 4.569943 AGCGTACACACTCAAGATGATTT 58.430 39.130 0.00 0.00 0.00 2.17
2205 2455 4.193826 AGCGTACACACTCAAGATGATT 57.806 40.909 0.00 0.00 0.00 2.57
2206 2456 3.876274 AGCGTACACACTCAAGATGAT 57.124 42.857 0.00 0.00 0.00 2.45
2207 2457 3.317150 CAAGCGTACACACTCAAGATGA 58.683 45.455 0.00 0.00 0.00 2.92
2208 2458 2.159787 GCAAGCGTACACACTCAAGATG 60.160 50.000 0.00 0.00 0.00 2.90
2209 2459 2.069273 GCAAGCGTACACACTCAAGAT 58.931 47.619 0.00 0.00 0.00 2.40
2210 2460 1.068588 AGCAAGCGTACACACTCAAGA 59.931 47.619 0.00 0.00 0.00 3.02
2211 2461 1.502231 AGCAAGCGTACACACTCAAG 58.498 50.000 0.00 0.00 0.00 3.02
2212 2462 2.804697 TAGCAAGCGTACACACTCAA 57.195 45.000 0.00 0.00 0.00 3.02
2213 2463 2.804697 TTAGCAAGCGTACACACTCA 57.195 45.000 0.00 0.00 0.00 3.41
2214 2464 4.663636 ATTTTAGCAAGCGTACACACTC 57.336 40.909 0.00 0.00 0.00 3.51
2215 2465 5.212194 CAAATTTTAGCAAGCGTACACACT 58.788 37.500 0.00 0.00 0.00 3.55
2216 2466 4.973663 ACAAATTTTAGCAAGCGTACACAC 59.026 37.500 0.00 0.00 0.00 3.82
2217 2467 5.176407 ACAAATTTTAGCAAGCGTACACA 57.824 34.783 0.00 0.00 0.00 3.72
2218 2468 5.108027 CCAACAAATTTTAGCAAGCGTACAC 60.108 40.000 0.00 0.00 0.00 2.90
2219 2469 4.979197 CCAACAAATTTTAGCAAGCGTACA 59.021 37.500 0.00 0.00 0.00 2.90
2220 2470 4.384547 CCCAACAAATTTTAGCAAGCGTAC 59.615 41.667 0.00 0.00 0.00 3.67
2221 2471 4.551388 CCCAACAAATTTTAGCAAGCGTA 58.449 39.130 0.00 0.00 0.00 4.42
2222 2472 3.389221 CCCAACAAATTTTAGCAAGCGT 58.611 40.909 0.00 0.00 0.00 5.07
2223 2473 2.157474 GCCCAACAAATTTTAGCAAGCG 59.843 45.455 0.00 0.00 0.00 4.68
2224 2474 2.483877 GGCCCAACAAATTTTAGCAAGC 59.516 45.455 0.00 0.00 0.00 4.01
2225 2475 3.737850 TGGCCCAACAAATTTTAGCAAG 58.262 40.909 0.00 0.00 0.00 4.01
2226 2476 3.845781 TGGCCCAACAAATTTTAGCAA 57.154 38.095 0.00 0.00 0.00 3.91
2227 2477 3.582208 AGATGGCCCAACAAATTTTAGCA 59.418 39.130 0.00 0.00 0.00 3.49
2228 2478 3.934579 CAGATGGCCCAACAAATTTTAGC 59.065 43.478 0.00 0.00 0.00 3.09
2229 2479 5.404466 TCAGATGGCCCAACAAATTTTAG 57.596 39.130 0.00 0.00 0.00 1.85
2230 2480 4.222588 CCTCAGATGGCCCAACAAATTTTA 59.777 41.667 0.00 0.00 0.00 1.52
2231 2481 3.008266 CCTCAGATGGCCCAACAAATTTT 59.992 43.478 0.00 0.00 0.00 1.82
2232 2482 2.568509 CCTCAGATGGCCCAACAAATTT 59.431 45.455 0.00 0.00 0.00 1.82
2233 2483 2.181975 CCTCAGATGGCCCAACAAATT 58.818 47.619 0.00 0.00 0.00 1.82
2234 2484 1.620524 CCCTCAGATGGCCCAACAAAT 60.621 52.381 0.00 0.00 0.00 2.32
2235 2485 0.251742 CCCTCAGATGGCCCAACAAA 60.252 55.000 0.00 0.00 0.00 2.83
2236 2486 1.383799 CCCTCAGATGGCCCAACAA 59.616 57.895 0.00 0.00 0.00 2.83
2237 2487 3.089838 CCCTCAGATGGCCCAACA 58.910 61.111 0.00 0.00 0.00 3.33
2238 2488 2.440980 GCCCTCAGATGGCCCAAC 60.441 66.667 5.40 0.00 43.33 3.77
2244 2494 2.295885 CAAAAGCTAGCCCTCAGATGG 58.704 52.381 12.13 0.00 0.00 3.51
2245 2495 1.674962 GCAAAAGCTAGCCCTCAGATG 59.325 52.381 12.13 2.66 0.00 2.90
2246 2496 1.563410 AGCAAAAGCTAGCCCTCAGAT 59.437 47.619 12.13 0.00 0.00 2.90
2247 2497 0.987294 AGCAAAAGCTAGCCCTCAGA 59.013 50.000 12.13 0.00 0.00 3.27
2248 2498 1.831580 AAGCAAAAGCTAGCCCTCAG 58.168 50.000 12.13 0.00 0.00 3.35
2249 2499 1.888512 CAAAGCAAAAGCTAGCCCTCA 59.111 47.619 12.13 0.00 0.00 3.86
2250 2500 1.889170 ACAAAGCAAAAGCTAGCCCTC 59.111 47.619 12.13 0.00 0.00 4.30
2251 2501 1.889170 GACAAAGCAAAAGCTAGCCCT 59.111 47.619 12.13 0.00 0.00 5.19
2252 2502 1.889170 AGACAAAGCAAAAGCTAGCCC 59.111 47.619 12.13 0.00 0.00 5.19
2253 2503 3.127721 CCTAGACAAAGCAAAAGCTAGCC 59.872 47.826 12.13 0.00 0.00 3.93
2254 2504 3.753797 ACCTAGACAAAGCAAAAGCTAGC 59.246 43.478 6.62 6.62 0.00 3.42
2255 2505 4.997395 TCACCTAGACAAAGCAAAAGCTAG 59.003 41.667 0.00 0.00 0.00 3.42
2256 2506 4.968259 TCACCTAGACAAAGCAAAAGCTA 58.032 39.130 0.00 0.00 0.00 3.32
2257 2507 3.820557 TCACCTAGACAAAGCAAAAGCT 58.179 40.909 0.00 0.00 0.00 3.74
2258 2508 4.568152 TTCACCTAGACAAAGCAAAAGC 57.432 40.909 0.00 0.00 0.00 3.51
2259 2509 4.970003 CGTTTCACCTAGACAAAGCAAAAG 59.030 41.667 0.00 0.00 0.00 2.27
2260 2510 4.732355 GCGTTTCACCTAGACAAAGCAAAA 60.732 41.667 0.00 0.00 0.00 2.44
2261 2511 3.242936 GCGTTTCACCTAGACAAAGCAAA 60.243 43.478 0.00 0.00 0.00 3.68
2262 2512 2.289547 GCGTTTCACCTAGACAAAGCAA 59.710 45.455 0.00 0.00 0.00 3.91
2263 2513 1.871039 GCGTTTCACCTAGACAAAGCA 59.129 47.619 0.00 0.00 0.00 3.91
2264 2514 1.197036 GGCGTTTCACCTAGACAAAGC 59.803 52.381 0.00 0.00 0.00 3.51
2265 2515 2.480419 CTGGCGTTTCACCTAGACAAAG 59.520 50.000 0.00 0.00 0.00 2.77
2266 2516 2.103432 TCTGGCGTTTCACCTAGACAAA 59.897 45.455 0.00 0.00 0.00 2.83
2267 2517 1.689813 TCTGGCGTTTCACCTAGACAA 59.310 47.619 0.00 0.00 0.00 3.18
2268 2518 1.334160 TCTGGCGTTTCACCTAGACA 58.666 50.000 0.00 0.00 0.00 3.41
2269 2519 2.450609 TTCTGGCGTTTCACCTAGAC 57.549 50.000 0.00 0.00 0.00 2.59
2270 2520 3.695830 AATTCTGGCGTTTCACCTAGA 57.304 42.857 0.00 0.00 0.00 2.43
2271 2521 3.670627 GCAAATTCTGGCGTTTCACCTAG 60.671 47.826 0.00 0.00 0.00 3.02
2272 2522 2.227865 GCAAATTCTGGCGTTTCACCTA 59.772 45.455 0.00 0.00 0.00 3.08
2273 2523 1.000274 GCAAATTCTGGCGTTTCACCT 60.000 47.619 0.00 0.00 0.00 4.00
2274 2524 1.000274 AGCAAATTCTGGCGTTTCACC 60.000 47.619 0.00 0.00 34.54 4.02
2275 2525 2.053627 CAGCAAATTCTGGCGTTTCAC 58.946 47.619 0.00 0.00 34.54 3.18
2276 2526 1.602668 GCAGCAAATTCTGGCGTTTCA 60.603 47.619 0.00 0.00 34.74 2.69
2277 2527 1.063031 GCAGCAAATTCTGGCGTTTC 58.937 50.000 0.00 0.00 34.74 2.78
2278 2528 0.675633 AGCAGCAAATTCTGGCGTTT 59.324 45.000 0.00 0.00 34.74 3.60
2279 2529 0.242017 GAGCAGCAAATTCTGGCGTT 59.758 50.000 0.00 0.00 34.74 4.84
2280 2530 0.890542 TGAGCAGCAAATTCTGGCGT 60.891 50.000 0.00 0.00 34.74 5.68
2281 2531 0.241749 TTGAGCAGCAAATTCTGGCG 59.758 50.000 0.00 0.00 34.74 5.69
2282 2532 2.443887 TTTGAGCAGCAAATTCTGGC 57.556 45.000 0.00 0.00 41.37 4.85
2283 2533 7.424227 TTTAATTTTGAGCAGCAAATTCTGG 57.576 32.000 5.43 0.00 45.30 3.86
2284 2534 8.336806 TGTTTTAATTTTGAGCAGCAAATTCTG 58.663 29.630 5.43 0.00 45.30 3.02
2285 2535 8.436046 TGTTTTAATTTTGAGCAGCAAATTCT 57.564 26.923 5.43 0.00 45.30 2.40
2286 2536 9.667989 ATTGTTTTAATTTTGAGCAGCAAATTC 57.332 25.926 5.43 0.00 45.30 2.17
2287 2537 9.453325 CATTGTTTTAATTTTGAGCAGCAAATT 57.547 25.926 5.72 7.02 45.30 1.82
2288 2538 8.623030 ACATTGTTTTAATTTTGAGCAGCAAAT 58.377 25.926 5.72 0.00 45.30 2.32
2289 2539 7.983307 ACATTGTTTTAATTTTGAGCAGCAAA 58.017 26.923 0.00 1.19 44.38 3.68
2290 2540 7.551035 ACATTGTTTTAATTTTGAGCAGCAA 57.449 28.000 0.00 0.00 33.88 3.91
2291 2541 8.830201 ATACATTGTTTTAATTTTGAGCAGCA 57.170 26.923 0.00 0.00 0.00 4.41
2292 2542 9.143631 AGATACATTGTTTTAATTTTGAGCAGC 57.856 29.630 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.