Multiple sequence alignment - TraesCS7D01G329500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G329500 chr7D 100.000 5575 0 0 487 6061 421177941 421172367 0.000000e+00 10296.0
1 TraesCS7D01G329500 chr7D 81.081 592 72 20 5508 6061 130923246 130922657 2.590000e-118 436.0
2 TraesCS7D01G329500 chr7D 100.000 167 0 0 1 167 421178427 421178261 5.900000e-80 309.0
3 TraesCS7D01G329500 chr7D 91.411 163 14 0 1 163 581282769 581282931 2.200000e-54 224.0
4 TraesCS7D01G329500 chr7D 81.498 227 36 2 5274 5496 474354186 474354410 1.340000e-41 182.0
5 TraesCS7D01G329500 chr7D 78.750 240 28 10 5276 5492 184817890 184818129 8.190000e-29 139.0
6 TraesCS7D01G329500 chr7D 84.298 121 13 5 489 607 89719793 89719677 4.970000e-21 113.0
7 TraesCS7D01G329500 chr7D 85.577 104 10 2 5398 5496 417368353 417368456 2.990000e-18 104.0
8 TraesCS7D01G329500 chr7D 86.139 101 8 4 5404 5499 505372410 505372311 2.990000e-18 104.0
9 TraesCS7D01G329500 chr7D 85.000 80 8 3 5279 5356 78867789 78867712 1.810000e-10 78.7
10 TraesCS7D01G329500 chr7B 95.587 4781 138 36 537 5278 437371995 437367249 0.000000e+00 7592.0
11 TraesCS7D01G329500 chr7B 91.176 170 12 2 1 167 437372270 437372101 1.700000e-55 228.0
12 TraesCS7D01G329500 chr7B 81.277 235 29 7 5279 5499 721804563 721804330 6.240000e-40 176.0
13 TraesCS7D01G329500 chr7B 90.152 132 5 7 5508 5635 646262146 646262019 1.350000e-36 165.0
14 TraesCS7D01G329500 chr7B 77.917 240 30 16 5279 5500 100354727 100354493 1.770000e-25 128.0
15 TraesCS7D01G329500 chr7B 92.105 76 6 0 5339 5414 80369315 80369240 2.310000e-19 108.0
16 TraesCS7D01G329500 chr7A 89.662 1035 86 11 917 1950 511925410 511926424 0.000000e+00 1299.0
17 TraesCS7D01G329500 chr7A 91.184 828 48 6 1991 2809 511926507 511927318 0.000000e+00 1101.0
18 TraesCS7D01G329500 chr7A 86.934 972 77 36 3250 4187 511929208 511930163 0.000000e+00 1046.0
19 TraesCS7D01G329500 chr7A 89.869 612 40 14 4623 5219 511930709 511931313 0.000000e+00 767.0
20 TraesCS7D01G329500 chr7A 82.639 576 72 14 5504 6053 167788968 167789541 9.130000e-133 484.0
21 TraesCS7D01G329500 chr7A 88.684 380 38 4 4224 4603 511930162 511930536 5.540000e-125 459.0
22 TraesCS7D01G329500 chr7A 82.660 421 64 6 5628 6043 223944470 223944054 1.240000e-96 364.0
23 TraesCS7D01G329500 chr7A 91.441 222 17 2 2806 3025 511927410 511927631 2.750000e-78 303.0
24 TraesCS7D01G329500 chr7A 85.535 159 23 0 9 167 517572414 517572256 3.760000e-37 167.0
25 TraesCS7D01G329500 chr7A 82.540 126 13 6 489 607 691638531 691638654 1.070000e-17 102.0
26 TraesCS7D01G329500 chr7A 97.297 37 1 0 3011 3047 511929185 511929221 5.070000e-06 63.9
27 TraesCS7D01G329500 chr1A 84.505 555 69 6 5508 6049 284152139 284152689 3.220000e-147 532.0
28 TraesCS7D01G329500 chr1A 83.864 440 56 9 5632 6056 374023985 374023546 7.310000e-109 405.0
29 TraesCS7D01G329500 chr1A 89.032 155 17 0 4 158 369399870 369399716 6.200000e-45 193.0
30 TraesCS7D01G329500 chr5A 84.173 556 75 7 5508 6051 652940540 652939986 1.500000e-145 527.0
31 TraesCS7D01G329500 chr5A 79.793 579 72 26 5514 6049 574661547 574662123 4.430000e-101 379.0
32 TraesCS7D01G329500 chr2B 81.895 591 73 17 5502 6061 470909172 470908585 9.200000e-128 468.0
33 TraesCS7D01G329500 chr2B 83.529 85 11 3 5276 5359 24322352 24322270 6.510000e-10 76.8
34 TraesCS7D01G329500 chr6B 83.705 448 56 9 5629 6061 258754905 258755350 2.030000e-109 407.0
35 TraesCS7D01G329500 chr6B 87.273 165 18 2 3048 3209 607119793 607119629 1.040000e-42 185.0
36 TraesCS7D01G329500 chr6B 78.472 144 12 14 3045 3174 151204847 151204709 6.510000e-10 76.8
37 TraesCS7D01G329500 chr1B 79.831 590 69 17 5508 6061 592644680 592644105 9.530000e-103 385.0
38 TraesCS7D01G329500 chr1B 80.357 224 40 1 5277 5496 181151290 181151513 3.760000e-37 167.0
39 TraesCS7D01G329500 chr3B 81.655 447 61 12 5632 6061 628719357 628718915 9.670000e-93 351.0
40 TraesCS7D01G329500 chr3B 82.521 349 47 5 5712 6047 204393532 204393879 1.650000e-75 294.0
41 TraesCS7D01G329500 chr3B 86.957 161 19 2 3050 3209 752327808 752327649 4.830000e-41 180.0
42 TraesCS7D01G329500 chr3B 78.832 137 13 11 3045 3168 466621678 466621811 1.810000e-10 78.7
43 TraesCS7D01G329500 chr6D 89.241 158 17 0 1 158 6324574 6324731 1.330000e-46 198.0
44 TraesCS7D01G329500 chr6D 91.603 131 11 0 1 131 263158781 263158911 1.340000e-41 182.0
45 TraesCS7D01G329500 chr6D 82.677 127 11 9 489 607 83062923 83062800 1.070000e-17 102.0
46 TraesCS7D01G329500 chr6D 81.452 124 17 6 489 607 429002356 429002234 5.000000e-16 97.1
47 TraesCS7D01G329500 chr4D 88.957 163 14 3 3049 3209 165753793 165753953 1.330000e-46 198.0
48 TraesCS7D01G329500 chr4D 78.226 248 31 15 5266 5496 64370283 64370524 2.950000e-28 137.0
49 TraesCS7D01G329500 chr4D 81.890 127 12 8 489 607 468857319 468857196 5.000000e-16 97.1
50 TraesCS7D01G329500 chr4D 86.420 81 9 2 5335 5414 17255151 17255230 3.010000e-13 87.9
51 TraesCS7D01G329500 chr1D 87.578 161 20 0 1 161 5528074 5528234 2.880000e-43 187.0
52 TraesCS7D01G329500 chr1D 83.333 120 13 5 489 607 41382797 41382684 2.990000e-18 104.0
53 TraesCS7D01G329500 chr5B 85.976 164 19 3 3049 3209 710688790 710688952 8.080000e-39 172.0
54 TraesCS7D01G329500 chr5B 82.955 88 14 1 5277 5364 8922084 8921998 1.810000e-10 78.7
55 TraesCS7D01G329500 chr5B 92.308 52 4 0 5277 5328 390551997 390551946 2.340000e-09 75.0
56 TraesCS7D01G329500 chr2D 84.393 173 26 1 5505 5677 373876272 373876443 1.040000e-37 169.0
57 TraesCS7D01G329500 chr2D 88.542 96 5 4 5405 5496 471634400 471634493 1.790000e-20 111.0
58 TraesCS7D01G329500 chr2D 83.740 123 11 8 493 607 413958326 413958447 2.310000e-19 108.0
59 TraesCS7D01G329500 chr2D 83.158 95 6 3 5279 5363 190600360 190600266 1.810000e-10 78.7
60 TraesCS7D01G329500 chr2A 84.118 170 24 1 1 167 515937647 515937816 1.750000e-35 161.0
61 TraesCS7D01G329500 chr3D 83.951 162 26 0 1 162 581647510 581647671 8.130000e-34 156.0
62 TraesCS7D01G329500 chr3D 83.019 159 16 7 3055 3209 594587631 594587782 3.810000e-27 134.0
63 TraesCS7D01G329500 chr4A 78.481 237 27 9 5279 5492 134221225 134220990 3.810000e-27 134.0
64 TraesCS7D01G329500 chr4A 82.787 122 16 5 489 607 605541631 605541750 2.990000e-18 104.0
65 TraesCS7D01G329500 chr4B 81.818 154 11 8 5358 5496 500202097 500202248 4.970000e-21 113.0
66 TraesCS7D01G329500 chr6A 82.171 129 14 7 3049 3171 464506810 464506685 1.070000e-17 102.0
67 TraesCS7D01G329500 chr5D 82.022 89 10 2 5276 5364 466560300 466560218 3.030000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G329500 chr7D 421172367 421178427 6060 True 5302.500000 10296 100.000000 1 6061 2 chr7D.!!$R5 6060
1 TraesCS7D01G329500 chr7D 130922657 130923246 589 True 436.000000 436 81.081000 5508 6061 1 chr7D.!!$R3 553
2 TraesCS7D01G329500 chr7B 437367249 437372270 5021 True 3910.000000 7592 93.381500 1 5278 2 chr7B.!!$R5 5277
3 TraesCS7D01G329500 chr7A 511925410 511931313 5903 False 719.842857 1299 90.724429 917 5219 7 chr7A.!!$F3 4302
4 TraesCS7D01G329500 chr7A 167788968 167789541 573 False 484.000000 484 82.639000 5504 6053 1 chr7A.!!$F1 549
5 TraesCS7D01G329500 chr1A 284152139 284152689 550 False 532.000000 532 84.505000 5508 6049 1 chr1A.!!$F1 541
6 TraesCS7D01G329500 chr5A 652939986 652940540 554 True 527.000000 527 84.173000 5508 6051 1 chr5A.!!$R1 543
7 TraesCS7D01G329500 chr5A 574661547 574662123 576 False 379.000000 379 79.793000 5514 6049 1 chr5A.!!$F1 535
8 TraesCS7D01G329500 chr2B 470908585 470909172 587 True 468.000000 468 81.895000 5502 6061 1 chr2B.!!$R2 559
9 TraesCS7D01G329500 chr1B 592644105 592644680 575 True 385.000000 385 79.831000 5508 6061 1 chr1B.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 824 0.105246 TGGAAAGCAAACCACCCCAT 60.105 50.000 0.00 0.0 0.00 4.00 F
874 900 0.466124 AACCGGAGATGCTCTTAGCC 59.534 55.000 9.46 0.0 41.51 3.93 F
876 902 1.006805 CGGAGATGCTCTTAGCCCG 60.007 63.158 0.00 0.0 41.51 6.13 F
1036 1066 1.201181 CCGTCTTCTCCACTCTCACAG 59.799 57.143 0.00 0.0 0.00 3.66 F
1621 1652 1.681264 CCGGACCAAAATTAGATGCCC 59.319 52.381 0.00 0.0 0.00 5.36 F
1678 1709 2.289274 CGACTGTGCATTTGGTTGTGTA 59.711 45.455 0.00 0.0 0.00 2.90 F
2588 2667 2.687914 GCTGGGCCAATGGTAAGAATCT 60.688 50.000 8.04 0.0 0.00 2.40 F
3121 4868 0.946221 GACTGCAGACAACCCGACAG 60.946 60.000 23.35 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1927 4.377839 ACATGATGTTCTCTCCACGTAG 57.622 45.455 0.00 0.0 0.00 3.51 R
2632 2711 5.927819 ACCATGAACATGTGGAAAACAAAT 58.072 33.333 0.00 0.0 43.61 2.32 R
2905 3083 4.636206 AGAAGACTAAAGCTATTTTGCCCG 59.364 41.667 0.00 0.0 0.00 6.13 R
3047 4794 3.897325 GGTGAAAGCCTTTTTCGGTAAG 58.103 45.455 0.00 0.0 0.00 2.34 R
3086 4833 2.604914 GCAGTCTGTATGTCGATGGTTG 59.395 50.000 0.93 0.0 0.00 3.77 R
3121 4868 2.832661 TGCCTTGGGTGTGTGTGC 60.833 61.111 0.00 0.0 0.00 4.57 R
4505 6290 2.090760 TGCTTAAGCGCATCATCCAAA 58.909 42.857 21.97 0.0 45.83 3.28 R
5100 7049 0.811616 CTAACACAGCATCCCCTCGC 60.812 60.000 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.677228 CCTCAAATGGGCGAGGGT 59.323 61.111 0.00 0.00 44.37 4.34
44 45 1.750399 CCTCAAATGGGCGAGGGTG 60.750 63.158 0.00 0.00 44.37 4.61
158 162 1.583967 CGACAGCGATGACGAGGAC 60.584 63.158 20.13 0.00 42.66 3.85
163 167 4.538283 CGATGACGAGGACGCGCT 62.538 66.667 5.73 0.00 43.96 5.92
547 566 1.135939 CGACGATGGCGACTACACA 59.864 57.895 0.00 0.00 41.64 3.72
584 603 2.124736 GCATGTAGAAGGCGGGCA 60.125 61.111 3.78 0.00 0.00 5.36
626 645 4.832590 CGTAGTAGTGCTAGGCATAGTT 57.167 45.455 7.32 0.00 41.91 2.24
627 646 4.537965 CGTAGTAGTGCTAGGCATAGTTG 58.462 47.826 7.32 0.00 41.91 3.16
720 739 1.535015 CGAATTTGTGGCGTGTTTGGT 60.535 47.619 0.00 0.00 0.00 3.67
745 764 3.828875 TTTTGGCCGATTTCCTGTTTT 57.171 38.095 0.00 0.00 0.00 2.43
752 771 4.149221 GGCCGATTTCCTGTTTTAAAAACG 59.851 41.667 1.31 0.00 0.00 3.60
753 772 4.149221 GCCGATTTCCTGTTTTAAAAACGG 59.851 41.667 1.31 10.27 39.39 4.44
761 780 1.853510 GTTTTAAAAACGGCGTGTGGG 59.146 47.619 15.70 0.00 0.00 4.61
763 782 0.465097 TTAAAAACGGCGTGTGGGGA 60.465 50.000 15.70 0.00 0.00 4.81
772 791 3.403558 GTGTGGGGAGAGGAGGCC 61.404 72.222 0.00 0.00 0.00 5.19
795 819 1.367471 GGCCTGGAAAGCAAACCAC 59.633 57.895 0.00 0.00 32.44 4.16
799 823 0.758685 CTGGAAAGCAAACCACCCCA 60.759 55.000 0.00 0.00 32.44 4.96
800 824 0.105246 TGGAAAGCAAACCACCCCAT 60.105 50.000 0.00 0.00 0.00 4.00
801 825 1.148027 TGGAAAGCAAACCACCCCATA 59.852 47.619 0.00 0.00 0.00 2.74
802 826 2.225496 TGGAAAGCAAACCACCCCATAT 60.225 45.455 0.00 0.00 0.00 1.78
803 827 2.837591 GGAAAGCAAACCACCCCATATT 59.162 45.455 0.00 0.00 0.00 1.28
804 828 4.027437 GGAAAGCAAACCACCCCATATTA 58.973 43.478 0.00 0.00 0.00 0.98
813 838 8.207545 GCAAACCACCCCATATTAAAATTATCA 58.792 33.333 0.00 0.00 0.00 2.15
818 843 6.492087 CACCCCATATTAAAATTATCACCGGT 59.508 38.462 0.00 0.00 0.00 5.28
834 859 4.980805 GTGCGCCCCGAGACAACA 62.981 66.667 4.18 0.00 0.00 3.33
849 875 5.394883 CGAGACAACACTATTTAAGCCCCTA 60.395 44.000 0.00 0.00 0.00 3.53
872 898 2.126914 CGAACCGGAGATGCTCTTAG 57.873 55.000 9.46 0.00 0.00 2.18
873 899 1.859383 GAACCGGAGATGCTCTTAGC 58.141 55.000 9.46 0.00 42.82 3.09
874 900 0.466124 AACCGGAGATGCTCTTAGCC 59.534 55.000 9.46 0.00 41.51 3.93
875 901 1.369321 CCGGAGATGCTCTTAGCCC 59.631 63.158 0.00 0.00 41.51 5.19
876 902 1.006805 CGGAGATGCTCTTAGCCCG 60.007 63.158 0.00 0.00 41.51 6.13
877 903 1.739338 CGGAGATGCTCTTAGCCCGT 61.739 60.000 6.27 0.00 41.51 5.28
878 904 1.329256 GGAGATGCTCTTAGCCCGTA 58.671 55.000 0.00 0.00 41.51 4.02
1036 1066 1.201181 CCGTCTTCTCCACTCTCACAG 59.799 57.143 0.00 0.00 0.00 3.66
1061 1091 2.056099 TTCTCCCCTTCCCCACCTCA 62.056 60.000 0.00 0.00 0.00 3.86
1384 1414 4.617520 TCAAGCTTGCCGCCGACA 62.618 61.111 21.99 0.00 40.39 4.35
1477 1507 4.488879 CGTTACCTGTACCTGTTAACTCC 58.511 47.826 7.22 0.00 0.00 3.85
1621 1652 1.681264 CCGGACCAAAATTAGATGCCC 59.319 52.381 0.00 0.00 0.00 5.36
1678 1709 2.289274 CGACTGTGCATTTGGTTGTGTA 59.711 45.455 0.00 0.00 0.00 2.90
1679 1710 3.242903 CGACTGTGCATTTGGTTGTGTAA 60.243 43.478 0.00 0.00 0.00 2.41
1735 1766 3.819564 TGTATCCATGACCTTTCTCGG 57.180 47.619 0.00 0.00 0.00 4.63
2002 2075 7.913297 GTGTGTAGTCTTTGCAAACTTAATCAA 59.087 33.333 8.05 0.00 27.94 2.57
2588 2667 2.687914 GCTGGGCCAATGGTAAGAATCT 60.688 50.000 8.04 0.00 0.00 2.40
2632 2711 5.016831 TGTCTACTGCAGAGAAGTTATCCA 58.983 41.667 23.35 8.20 32.51 3.41
2831 3008 6.705825 ACTTCACCCTGCAAAATTGATAAAAC 59.294 34.615 0.00 0.00 0.00 2.43
2996 3174 7.914346 GGCAGATGATGAAATTTCTCACTTTAG 59.086 37.037 18.64 9.77 0.00 1.85
3066 4813 4.217550 CCATCTTACCGAAAAAGGCTTTCA 59.782 41.667 13.76 0.00 33.69 2.69
3121 4868 0.946221 GACTGCAGACAACCCGACAG 60.946 60.000 23.35 0.00 0.00 3.51
3194 4941 2.430332 CAAAGACCCCAAAGCAGACAAA 59.570 45.455 0.00 0.00 0.00 2.83
3195 4942 2.452600 AGACCCCAAAGCAGACAAAA 57.547 45.000 0.00 0.00 0.00 2.44
3196 4943 2.745968 AGACCCCAAAGCAGACAAAAA 58.254 42.857 0.00 0.00 0.00 1.94
3808 5565 8.700439 AGAACAGGGCAAATAAGTAAAGTTTA 57.300 30.769 0.00 0.00 0.00 2.01
3841 5599 7.998964 CCAAGGTAGGATGAGGTATTACAAATT 59.001 37.037 0.00 0.00 0.00 1.82
3969 5732 6.017605 AGAGAATTCAGTGTGTGCTTTGTAAG 60.018 38.462 8.44 0.00 0.00 2.34
3971 5734 3.275617 TCAGTGTGTGCTTTGTAAGGT 57.724 42.857 0.00 0.00 0.00 3.50
4147 5928 7.910162 ACACAATTTATTTAGCGCATGACTAAG 59.090 33.333 11.47 0.00 31.56 2.18
4178 5960 4.006319 ACAGAAGCCACTAGAAGCAATTC 58.994 43.478 0.00 0.15 0.00 2.17
4183 5965 5.990120 AGCCACTAGAAGCAATTCAAATT 57.010 34.783 0.00 0.00 0.00 1.82
4276 6061 7.642669 TGTCTGCTTTCTTGTATTTCTCTTTG 58.357 34.615 0.00 0.00 0.00 2.77
4445 6230 1.720852 GCAAATGTTGTCGTTGCATCC 59.279 47.619 2.88 0.00 0.00 3.51
4505 6290 2.211250 AGATGGTTGCTGATGTGCTT 57.789 45.000 0.00 0.00 0.00 3.91
4615 6400 7.376335 AGGTTTTACTCCTATCTTATGTCCC 57.624 40.000 0.00 0.00 33.04 4.46
4709 6644 1.239968 AAGAAGCAAGCCGAGGCAAG 61.240 55.000 17.18 9.02 44.88 4.01
4800 6735 5.049398 TGGTGTGCGATAAACATTAAACC 57.951 39.130 0.00 0.00 0.00 3.27
4818 6753 1.628846 ACCCCTAGCGAAACAGACATT 59.371 47.619 0.00 0.00 0.00 2.71
4967 6902 0.824109 TGATCACTAGCCAAGGTCCG 59.176 55.000 0.00 0.00 0.00 4.79
5015 6950 1.338107 TCGTGGAGAAGCTCTTTGGA 58.662 50.000 0.00 0.00 0.00 3.53
5063 6998 3.961477 TCAATGGTTTTCGTGTGAGTG 57.039 42.857 0.00 0.00 0.00 3.51
5082 7017 3.192422 AGTGCTGTTGCTACTAGAGAGTG 59.808 47.826 0.00 0.00 40.48 3.51
5085 7020 3.729462 GCTGTTGCTACTAGAGAGTGACG 60.729 52.174 0.00 0.00 36.28 4.35
5086 7021 2.161808 TGTTGCTACTAGAGAGTGACGC 59.838 50.000 0.00 0.00 36.28 5.19
5087 7022 2.404923 TGCTACTAGAGAGTGACGCT 57.595 50.000 0.00 0.00 36.28 5.07
5088 7023 2.010497 TGCTACTAGAGAGTGACGCTG 58.990 52.381 0.00 0.00 36.28 5.18
5089 7024 2.011222 GCTACTAGAGAGTGACGCTGT 58.989 52.381 0.00 0.00 36.28 4.40
5100 7049 4.389992 AGAGTGACGCTGTTTGTGAATATG 59.610 41.667 0.00 0.00 0.00 1.78
5135 7084 3.862845 GTGTTAGCTGGTGGTTTTTGTTG 59.137 43.478 0.00 0.00 0.00 3.33
5140 7089 3.123050 GCTGGTGGTTTTTGTTGCTTAG 58.877 45.455 0.00 0.00 0.00 2.18
5143 7092 5.251601 TGGTGGTTTTTGTTGCTTAGTAC 57.748 39.130 0.00 0.00 0.00 2.73
5147 7097 6.038492 GGTGGTTTTTGTTGCTTAGTACTACA 59.962 38.462 0.91 0.00 0.00 2.74
5192 7142 6.866480 TGGATGGAAATGCAATAAAGAGTTC 58.134 36.000 0.00 0.00 0.00 3.01
5203 7153 8.791327 TGCAATAAAGAGTTCAGATGAATACA 57.209 30.769 0.00 0.00 36.33 2.29
5246 7196 6.147328 ACGCCTTCTGAAAACTATGTTTAGTC 59.853 38.462 0.00 0.00 37.70 2.59
5249 7199 6.369065 CCTTCTGAAAACTATGTTTAGTCGCT 59.631 38.462 0.00 0.00 37.70 4.93
5250 7200 6.706055 TCTGAAAACTATGTTTAGTCGCTG 57.294 37.500 0.00 0.00 37.70 5.18
5272 7222 3.554337 GGACTCATGTAACTTGTCGTGGT 60.554 47.826 0.00 0.00 0.00 4.16
5274 7224 4.448210 ACTCATGTAACTTGTCGTGGTTT 58.552 39.130 0.00 0.00 0.00 3.27
5278 7228 6.282167 TCATGTAACTTGTCGTGGTTTCTAA 58.718 36.000 0.00 0.00 0.00 2.10
5279 7229 6.422701 TCATGTAACTTGTCGTGGTTTCTAAG 59.577 38.462 0.00 0.00 0.00 2.18
5280 7230 5.904941 TGTAACTTGTCGTGGTTTCTAAGA 58.095 37.500 0.00 0.00 0.00 2.10
5281 7231 5.981315 TGTAACTTGTCGTGGTTTCTAAGAG 59.019 40.000 0.00 0.00 0.00 2.85
5282 7232 3.391049 ACTTGTCGTGGTTTCTAAGAGC 58.609 45.455 0.00 0.00 0.00 4.09
5283 7233 3.181469 ACTTGTCGTGGTTTCTAAGAGCA 60.181 43.478 0.00 0.00 0.00 4.26
5284 7234 3.678056 TGTCGTGGTTTCTAAGAGCAT 57.322 42.857 0.00 0.00 0.00 3.79
5285 7235 3.585862 TGTCGTGGTTTCTAAGAGCATC 58.414 45.455 0.00 0.00 0.00 3.91
5298 7248 2.977772 GAGCATCTACAGCCAGACTT 57.022 50.000 0.00 0.00 0.00 3.01
5299 7249 2.548875 GAGCATCTACAGCCAGACTTG 58.451 52.381 0.00 0.00 0.00 3.16
5309 7259 2.183409 CCAGACTTGGCAAATCCGG 58.817 57.895 4.87 0.12 37.73 5.14
5310 7260 1.508088 CAGACTTGGCAAATCCGGC 59.492 57.895 4.87 0.00 37.80 6.13
5318 7268 3.377759 CAAATCCGGCCCCGCAAA 61.378 61.111 0.00 0.00 38.24 3.68
5319 7269 2.363665 AAATCCGGCCCCGCAAAT 60.364 55.556 0.00 0.00 38.24 2.32
5320 7270 2.720134 AAATCCGGCCCCGCAAATG 61.720 57.895 0.00 0.00 38.24 2.32
5321 7271 3.955543 AATCCGGCCCCGCAAATGT 62.956 57.895 0.00 0.00 38.24 2.71
5332 7282 4.418401 CAAATGTGCCCGGGCGTG 62.418 66.667 39.00 26.00 45.51 5.34
5333 7283 4.966787 AAATGTGCCCGGGCGTGT 62.967 61.111 39.00 24.47 45.51 4.49
5346 7296 4.293648 CGTGTCCGTGGGCACTGA 62.294 66.667 20.38 0.00 33.78 3.41
5347 7297 2.665185 GTGTCCGTGGGCACTGAC 60.665 66.667 16.17 0.00 43.14 3.51
5348 7298 3.936203 TGTCCGTGGGCACTGACC 61.936 66.667 0.00 0.00 42.48 4.02
5356 7306 4.643387 GGCACTGACCGGGCACTT 62.643 66.667 5.41 0.00 0.00 3.16
5357 7307 3.050275 GCACTGACCGGGCACTTC 61.050 66.667 5.41 0.00 0.00 3.01
5358 7308 2.743718 CACTGACCGGGCACTTCT 59.256 61.111 5.41 0.00 0.00 2.85
5359 7309 1.374758 CACTGACCGGGCACTTCTC 60.375 63.158 5.41 0.00 0.00 2.87
5360 7310 1.837051 ACTGACCGGGCACTTCTCA 60.837 57.895 5.41 0.00 0.00 3.27
5361 7311 1.371183 CTGACCGGGCACTTCTCAA 59.629 57.895 5.41 0.00 0.00 3.02
5362 7312 0.250295 CTGACCGGGCACTTCTCAAA 60.250 55.000 5.41 0.00 0.00 2.69
5363 7313 0.400213 TGACCGGGCACTTCTCAAAT 59.600 50.000 5.41 0.00 0.00 2.32
5364 7314 0.804989 GACCGGGCACTTCTCAAATG 59.195 55.000 0.00 0.00 0.00 2.32
5365 7315 0.110486 ACCGGGCACTTCTCAAATGT 59.890 50.000 6.32 0.00 0.00 2.71
5366 7316 1.247567 CCGGGCACTTCTCAAATGTT 58.752 50.000 0.00 0.00 0.00 2.71
5367 7317 1.068333 CCGGGCACTTCTCAAATGTTG 60.068 52.381 0.00 0.00 0.00 3.33
5368 7318 1.666888 CGGGCACTTCTCAAATGTTGC 60.667 52.381 0.00 0.00 0.00 4.17
5369 7319 1.666888 GGGCACTTCTCAAATGTTGCG 60.667 52.381 0.00 0.00 0.00 4.85
5370 7320 1.055338 GCACTTCTCAAATGTTGCGC 58.945 50.000 0.00 0.00 0.00 6.09
5371 7321 1.689959 CACTTCTCAAATGTTGCGCC 58.310 50.000 4.18 0.00 0.00 6.53
5372 7322 0.238289 ACTTCTCAAATGTTGCGCCG 59.762 50.000 4.18 0.00 0.00 6.46
5373 7323 1.067199 CTTCTCAAATGTTGCGCCGC 61.067 55.000 4.18 0.00 0.00 6.53
5374 7324 1.790090 TTCTCAAATGTTGCGCCGCA 61.790 50.000 8.16 8.16 36.47 5.69
5375 7325 1.153978 CTCAAATGTTGCGCCGCAT 60.154 52.632 14.63 6.44 38.76 4.73
5376 7326 0.098552 CTCAAATGTTGCGCCGCATA 59.901 50.000 14.63 5.70 38.76 3.14
5377 7327 0.737804 TCAAATGTTGCGCCGCATAT 59.262 45.000 14.63 8.17 38.76 1.78
5378 7328 1.122849 CAAATGTTGCGCCGCATATC 58.877 50.000 14.63 7.56 38.76 1.63
5379 7329 0.030638 AAATGTTGCGCCGCATATCC 59.969 50.000 14.63 1.82 38.76 2.59
5380 7330 1.100463 AATGTTGCGCCGCATATCCA 61.100 50.000 14.63 8.19 38.76 3.41
5381 7331 1.785041 ATGTTGCGCCGCATATCCAC 61.785 55.000 14.63 8.45 38.76 4.02
5382 7332 2.124942 TTGCGCCGCATATCCACA 60.125 55.556 14.63 0.00 38.76 4.17
5383 7333 1.525765 TTGCGCCGCATATCCACAT 60.526 52.632 14.63 0.00 38.76 3.21
5384 7334 0.250081 TTGCGCCGCATATCCACATA 60.250 50.000 14.63 0.00 38.76 2.29
5385 7335 0.948623 TGCGCCGCATATCCACATAC 60.949 55.000 8.16 0.00 31.71 2.39
5386 7336 1.635663 GCGCCGCATATCCACATACC 61.636 60.000 3.15 0.00 0.00 2.73
5387 7337 1.351430 CGCCGCATATCCACATACCG 61.351 60.000 0.00 0.00 0.00 4.02
5388 7338 0.320421 GCCGCATATCCACATACCGT 60.320 55.000 0.00 0.00 0.00 4.83
5389 7339 1.067425 GCCGCATATCCACATACCGTA 60.067 52.381 0.00 0.00 0.00 4.02
5390 7340 2.610976 GCCGCATATCCACATACCGTAA 60.611 50.000 0.00 0.00 0.00 3.18
5391 7341 3.655486 CCGCATATCCACATACCGTAAA 58.345 45.455 0.00 0.00 0.00 2.01
5392 7342 4.250464 CCGCATATCCACATACCGTAAAT 58.750 43.478 0.00 0.00 0.00 1.40
5393 7343 4.693566 CCGCATATCCACATACCGTAAATT 59.306 41.667 0.00 0.00 0.00 1.82
5394 7344 5.163893 CCGCATATCCACATACCGTAAATTC 60.164 44.000 0.00 0.00 0.00 2.17
5395 7345 5.637810 CGCATATCCACATACCGTAAATTCT 59.362 40.000 0.00 0.00 0.00 2.40
5396 7346 6.401047 CGCATATCCACATACCGTAAATTCTG 60.401 42.308 0.00 0.00 0.00 3.02
5397 7347 6.649141 GCATATCCACATACCGTAAATTCTGA 59.351 38.462 0.00 0.00 0.00 3.27
5398 7348 7.334421 GCATATCCACATACCGTAAATTCTGAT 59.666 37.037 0.00 0.00 0.00 2.90
5399 7349 8.873830 CATATCCACATACCGTAAATTCTGATC 58.126 37.037 0.00 0.00 0.00 2.92
5400 7350 5.607477 TCCACATACCGTAAATTCTGATCC 58.393 41.667 0.00 0.00 0.00 3.36
5401 7351 5.365605 TCCACATACCGTAAATTCTGATCCT 59.634 40.000 0.00 0.00 0.00 3.24
5402 7352 6.551975 TCCACATACCGTAAATTCTGATCCTA 59.448 38.462 0.00 0.00 0.00 2.94
5403 7353 6.645415 CCACATACCGTAAATTCTGATCCTAC 59.355 42.308 0.00 0.00 0.00 3.18
5404 7354 7.207383 CACATACCGTAAATTCTGATCCTACA 58.793 38.462 0.00 0.00 0.00 2.74
5405 7355 7.709182 CACATACCGTAAATTCTGATCCTACAA 59.291 37.037 0.00 0.00 0.00 2.41
5406 7356 8.429641 ACATACCGTAAATTCTGATCCTACAAT 58.570 33.333 0.00 0.00 0.00 2.71
5407 7357 8.926710 CATACCGTAAATTCTGATCCTACAATC 58.073 37.037 0.00 0.00 0.00 2.67
5408 7358 6.884832 ACCGTAAATTCTGATCCTACAATCA 58.115 36.000 0.00 0.00 34.55 2.57
5409 7359 7.335627 ACCGTAAATTCTGATCCTACAATCAA 58.664 34.615 0.00 0.00 35.32 2.57
5410 7360 7.993183 ACCGTAAATTCTGATCCTACAATCAAT 59.007 33.333 0.00 0.00 35.32 2.57
5411 7361 8.285394 CCGTAAATTCTGATCCTACAATCAATG 58.715 37.037 0.00 0.00 35.32 2.82
5412 7362 7.800380 CGTAAATTCTGATCCTACAATCAATGC 59.200 37.037 0.00 0.00 35.32 3.56
5413 7363 7.649533 AAATTCTGATCCTACAATCAATGCA 57.350 32.000 0.00 0.00 35.32 3.96
5414 7364 6.630444 ATTCTGATCCTACAATCAATGCAC 57.370 37.500 0.00 0.00 35.32 4.57
5415 7365 4.122046 TCTGATCCTACAATCAATGCACG 58.878 43.478 0.00 0.00 35.32 5.34
5416 7366 2.613595 TGATCCTACAATCAATGCACGC 59.386 45.455 0.00 0.00 32.80 5.34
5417 7367 2.401583 TCCTACAATCAATGCACGCT 57.598 45.000 0.00 0.00 0.00 5.07
5418 7368 2.009051 TCCTACAATCAATGCACGCTG 58.991 47.619 0.00 0.00 0.00 5.18
5419 7369 2.009051 CCTACAATCAATGCACGCTGA 58.991 47.619 0.00 0.00 0.00 4.26
5420 7370 2.615447 CCTACAATCAATGCACGCTGAT 59.385 45.455 0.00 0.00 33.66 2.90
5421 7371 2.838386 ACAATCAATGCACGCTGATC 57.162 45.000 7.92 0.00 30.97 2.92
5422 7372 2.086094 ACAATCAATGCACGCTGATCA 58.914 42.857 7.92 0.00 30.97 2.92
5423 7373 2.686405 ACAATCAATGCACGCTGATCAT 59.314 40.909 0.00 0.00 30.97 2.45
5424 7374 3.878699 ACAATCAATGCACGCTGATCATA 59.121 39.130 0.00 0.00 30.97 2.15
5425 7375 4.216731 CAATCAATGCACGCTGATCATAC 58.783 43.478 0.00 0.00 30.97 2.39
5426 7376 1.860326 TCAATGCACGCTGATCATACG 59.140 47.619 14.68 14.68 0.00 3.06
5427 7377 1.860326 CAATGCACGCTGATCATACGA 59.140 47.619 21.12 3.60 0.00 3.43
5428 7378 2.445565 ATGCACGCTGATCATACGAT 57.554 45.000 21.12 5.51 33.31 3.73
5429 7379 3.575965 ATGCACGCTGATCATACGATA 57.424 42.857 21.12 9.60 29.66 2.92
5430 7380 2.661594 TGCACGCTGATCATACGATAC 58.338 47.619 21.12 11.83 29.66 2.24
5431 7381 2.034053 TGCACGCTGATCATACGATACA 59.966 45.455 21.12 13.69 29.66 2.29
5432 7382 3.049912 GCACGCTGATCATACGATACAA 58.950 45.455 21.12 0.00 29.66 2.41
5433 7383 3.489416 GCACGCTGATCATACGATACAAA 59.511 43.478 21.12 0.00 29.66 2.83
5434 7384 4.150627 GCACGCTGATCATACGATACAAAT 59.849 41.667 21.12 0.00 29.66 2.32
5435 7385 5.333339 GCACGCTGATCATACGATACAAATT 60.333 40.000 21.12 0.00 29.66 1.82
5436 7386 6.067039 CACGCTGATCATACGATACAAATTG 58.933 40.000 21.12 6.20 29.66 2.32
5437 7387 5.753438 ACGCTGATCATACGATACAAATTGT 59.247 36.000 21.12 3.43 34.00 2.71
5438 7388 6.257849 ACGCTGATCATACGATACAAATTGTT 59.742 34.615 21.12 0.00 31.79 2.83
5439 7389 6.787515 CGCTGATCATACGATACAAATTGTTC 59.212 38.462 3.17 1.41 31.79 3.18
5440 7390 6.787515 GCTGATCATACGATACAAATTGTTCG 59.212 38.462 20.44 20.44 37.13 3.95
5441 7391 7.306574 GCTGATCATACGATACAAATTGTTCGA 60.307 37.037 25.30 15.22 35.79 3.71
5442 7392 8.413899 TGATCATACGATACAAATTGTTCGAA 57.586 30.769 25.30 0.00 35.79 3.71
5443 7393 9.040939 TGATCATACGATACAAATTGTTCGAAT 57.959 29.630 25.30 16.64 35.79 3.34
5444 7394 9.864034 GATCATACGATACAAATTGTTCGAATT 57.136 29.630 25.30 13.30 35.79 2.17
5446 7396 9.697250 TCATACGATACAAATTGTTCGAATTTC 57.303 29.630 25.30 0.00 35.79 2.17
5447 7397 9.484326 CATACGATACAAATTGTTCGAATTTCA 57.516 29.630 25.30 0.00 35.79 2.69
5449 7399 8.789881 ACGATACAAATTGTTCGAATTTCAAA 57.210 26.923 25.30 0.00 35.79 2.69
5450 7400 8.901748 ACGATACAAATTGTTCGAATTTCAAAG 58.098 29.630 25.30 0.00 35.79 2.77
5451 7401 8.901748 CGATACAAATTGTTCGAATTTCAAAGT 58.098 29.630 18.62 5.04 34.93 2.66
5455 7405 9.360093 ACAAATTGTTCGAATTTCAAAGTAACA 57.640 25.926 0.00 0.00 0.00 2.41
5460 7410 8.744008 TGTTCGAATTTCAAAGTAACAAAACA 57.256 26.923 0.00 0.00 0.00 2.83
5461 7411 9.193133 TGTTCGAATTTCAAAGTAACAAAACAA 57.807 25.926 0.00 0.00 0.00 2.83
5464 7414 8.376942 TCGAATTTCAAAGTAACAAAACAAAGC 58.623 29.630 0.00 0.00 0.00 3.51
5465 7415 8.165428 CGAATTTCAAAGTAACAAAACAAAGCA 58.835 29.630 0.00 0.00 0.00 3.91
5466 7416 9.818796 GAATTTCAAAGTAACAAAACAAAGCAA 57.181 25.926 0.00 0.00 0.00 3.91
5469 7419 9.818796 TTTCAAAGTAACAAAACAAAGCAAATC 57.181 25.926 0.00 0.00 0.00 2.17
5470 7420 8.539770 TCAAAGTAACAAAACAAAGCAAATCA 57.460 26.923 0.00 0.00 0.00 2.57
5471 7421 9.160496 TCAAAGTAACAAAACAAAGCAAATCAT 57.840 25.926 0.00 0.00 0.00 2.45
5474 7424 9.816354 AAGTAACAAAACAAAGCAAATCATAGT 57.184 25.926 0.00 0.00 0.00 2.12
5475 7425 9.816354 AGTAACAAAACAAAGCAAATCATAGTT 57.184 25.926 0.00 0.00 0.00 2.24
5477 7427 8.715191 AACAAAACAAAGCAAATCATAGTTCA 57.285 26.923 0.00 0.00 0.00 3.18
5478 7428 8.715191 ACAAAACAAAGCAAATCATAGTTCAA 57.285 26.923 0.00 0.00 0.00 2.69
5479 7429 8.603181 ACAAAACAAAGCAAATCATAGTTCAAC 58.397 29.630 0.00 0.00 0.00 3.18
5480 7430 8.602328 CAAAACAAAGCAAATCATAGTTCAACA 58.398 29.630 0.00 0.00 0.00 3.33
5481 7431 8.715191 AAACAAAGCAAATCATAGTTCAACAA 57.285 26.923 0.00 0.00 0.00 2.83
5482 7432 8.715191 AACAAAGCAAATCATAGTTCAACAAA 57.285 26.923 0.00 0.00 0.00 2.83
5483 7433 8.130307 ACAAAGCAAATCATAGTTCAACAAAC 57.870 30.769 0.00 0.00 38.21 2.93
5484 7434 7.224557 ACAAAGCAAATCATAGTTCAACAAACC 59.775 33.333 0.00 0.00 38.76 3.27
5485 7435 6.403866 AGCAAATCATAGTTCAACAAACCA 57.596 33.333 0.00 0.00 38.76 3.67
5486 7436 6.449698 AGCAAATCATAGTTCAACAAACCAG 58.550 36.000 0.00 0.00 38.76 4.00
5487 7437 6.265196 AGCAAATCATAGTTCAACAAACCAGA 59.735 34.615 0.00 0.00 38.76 3.86
5488 7438 6.363357 GCAAATCATAGTTCAACAAACCAGAC 59.637 38.462 0.00 0.00 38.76 3.51
5489 7439 7.424803 CAAATCATAGTTCAACAAACCAGACA 58.575 34.615 0.00 0.00 38.76 3.41
5490 7440 7.765695 AATCATAGTTCAACAAACCAGACAT 57.234 32.000 0.00 0.00 38.76 3.06
5491 7441 6.558771 TCATAGTTCAACAAACCAGACATG 57.441 37.500 0.00 0.00 38.76 3.21
5492 7442 3.715628 AGTTCAACAAACCAGACATGC 57.284 42.857 0.00 0.00 38.76 4.06
5493 7443 2.362077 AGTTCAACAAACCAGACATGCC 59.638 45.455 0.00 0.00 38.76 4.40
5494 7444 2.064434 TCAACAAACCAGACATGCCA 57.936 45.000 0.00 0.00 0.00 4.92
5495 7445 2.382882 TCAACAAACCAGACATGCCAA 58.617 42.857 0.00 0.00 0.00 4.52
5496 7446 2.100584 TCAACAAACCAGACATGCCAAC 59.899 45.455 0.00 0.00 0.00 3.77
5497 7447 1.774110 ACAAACCAGACATGCCAACA 58.226 45.000 0.00 0.00 0.00 3.33
5498 7448 2.318908 ACAAACCAGACATGCCAACAT 58.681 42.857 0.00 0.00 36.79 2.71
5499 7449 3.495331 ACAAACCAGACATGCCAACATA 58.505 40.909 0.00 0.00 33.67 2.29
5500 7450 3.255642 ACAAACCAGACATGCCAACATAC 59.744 43.478 0.00 0.00 33.67 2.39
5501 7451 3.439857 AACCAGACATGCCAACATACT 57.560 42.857 0.00 0.00 33.67 2.12
5502 7452 3.439857 ACCAGACATGCCAACATACTT 57.560 42.857 0.00 0.00 33.67 2.24
5503 7453 3.766545 ACCAGACATGCCAACATACTTT 58.233 40.909 0.00 0.00 33.67 2.66
5504 7454 3.758554 ACCAGACATGCCAACATACTTTC 59.241 43.478 0.00 0.00 33.67 2.62
5505 7455 3.758023 CCAGACATGCCAACATACTTTCA 59.242 43.478 0.00 0.00 33.67 2.69
5506 7456 4.142534 CCAGACATGCCAACATACTTTCAG 60.143 45.833 0.00 0.00 33.67 3.02
5550 7500 6.974622 GCAAATCATAGTTCAACAAATCGGAT 59.025 34.615 0.00 0.00 0.00 4.18
5551 7501 7.043854 GCAAATCATAGTTCAACAAATCGGATG 60.044 37.037 0.00 0.00 0.00 3.51
5599 7549 1.821061 GACGGATGGCCTCGGATCAT 61.821 60.000 3.32 0.00 0.00 2.45
5607 7557 0.681733 GCCTCGGATCATTGGCTAGA 59.318 55.000 12.83 0.00 41.92 2.43
5637 7587 2.202878 GCGGAATGCGTCCTGCTA 60.203 61.111 12.55 0.00 45.36 3.49
5643 7623 0.758734 AATGCGTCCTGCTATGCCTA 59.241 50.000 0.00 0.00 46.63 3.93
5659 7639 2.043752 TACATCCGGACCGCCTCA 60.044 61.111 6.12 0.00 0.00 3.86
5732 7751 2.233922 TCGTTGATCTCCTTCTTGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
5772 7793 3.009363 TGCTCATCCAAGAGTTTCATCCA 59.991 43.478 0.00 0.00 37.94 3.41
5781 7803 3.424703 AGAGTTTCATCCACCAACATGG 58.575 45.455 0.00 0.00 45.02 3.66
5904 7934 3.202373 TCTCCAACTCGATCTTCTCCCTA 59.798 47.826 0.00 0.00 0.00 3.53
5928 7958 0.317160 TTTCGAGCTTCTTCTCCGCA 59.683 50.000 0.00 0.00 0.00 5.69
5932 7962 0.800300 GAGCTTCTTCTCCGCACTCG 60.800 60.000 0.00 0.00 0.00 4.18
5958 7989 4.390297 CGGTCTCACTCCATCTTTTTCTTC 59.610 45.833 0.00 0.00 0.00 2.87
5987 8018 3.327757 TCCAACATGAGCTTGTACCTCTT 59.672 43.478 0.00 0.00 0.00 2.85
5994 8025 4.673968 TGAGCTTGTACCTCTTCTCCTTA 58.326 43.478 0.00 0.00 0.00 2.69
6005 8039 5.154418 CCTCTTCTCCTTATTCTCCCTCAT 58.846 45.833 0.00 0.00 0.00 2.90
6053 8088 0.732571 ATTTTGGTAGCCGCGACATG 59.267 50.000 8.23 0.00 0.00 3.21
6056 8091 2.161078 TTGGTAGCCGCGACATGACA 62.161 55.000 8.23 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.061260 GCGGACGTACTCCACCCTC 62.061 68.421 0.00 0.00 39.39 4.30
43 44 3.807538 GCTCGCGGACGTACTCCA 61.808 66.667 6.13 0.00 39.39 3.86
44 45 3.736482 CTGCTCGCGGACGTACTCC 62.736 68.421 6.13 0.00 41.18 3.85
146 150 4.538283 AGCGCGTCCTCGTCATCG 62.538 66.667 8.43 0.00 39.49 3.84
529 533 1.132199 GTGTGTAGTCGCCATCGTCG 61.132 60.000 0.00 0.00 36.96 5.12
547 566 1.313812 CGAGGAGGCTGTAGAACCGT 61.314 60.000 0.00 0.00 0.00 4.83
595 614 2.651232 CTACTACGCCGCTGTCGC 60.651 66.667 0.00 0.00 0.00 5.19
601 620 1.008767 CCTAGCACTACTACGCCGC 60.009 63.158 0.00 0.00 0.00 6.53
682 701 7.174946 ACAAATTCGTCCAGACTATGTGATTTT 59.825 33.333 6.84 0.00 0.00 1.82
688 707 4.253685 CCACAAATTCGTCCAGACTATGT 58.746 43.478 0.00 0.00 0.00 2.29
690 709 3.270877 GCCACAAATTCGTCCAGACTAT 58.729 45.455 0.00 0.00 0.00 2.12
696 715 0.816018 ACACGCCACAAATTCGTCCA 60.816 50.000 0.00 0.00 33.84 4.02
720 739 2.163412 CAGGAAATCGGCCAAAATTCGA 59.837 45.455 2.24 0.00 37.33 3.71
745 764 0.885596 CTCCCCACACGCCGTTTTTA 60.886 55.000 0.00 0.00 0.00 1.52
752 771 3.775654 CTCCTCTCCCCACACGCC 61.776 72.222 0.00 0.00 0.00 5.68
753 772 3.775654 CCTCCTCTCCCCACACGC 61.776 72.222 0.00 0.00 0.00 5.34
761 780 3.093172 CCCCAAGGCCTCCTCTCC 61.093 72.222 5.23 0.00 30.89 3.71
772 791 1.120795 TTTGCTTTCCAGGCCCCAAG 61.121 55.000 0.00 0.00 0.00 3.61
787 811 8.207545 TGATAATTTTAATATGGGGTGGTTTGC 58.792 33.333 0.00 0.00 0.00 3.68
795 819 6.571537 GCACCGGTGATAATTTTAATATGGGG 60.572 42.308 38.30 4.69 0.00 4.96
799 823 5.335348 GGCGCACCGGTGATAATTTTAATAT 60.335 40.000 38.30 0.00 0.00 1.28
800 824 4.023878 GGCGCACCGGTGATAATTTTAATA 60.024 41.667 38.30 0.00 0.00 0.98
801 825 3.243267 GGCGCACCGGTGATAATTTTAAT 60.243 43.478 38.30 0.00 0.00 1.40
802 826 2.097791 GGCGCACCGGTGATAATTTTAA 59.902 45.455 38.30 0.00 0.00 1.52
803 827 1.671845 GGCGCACCGGTGATAATTTTA 59.328 47.619 38.30 0.00 0.00 1.52
804 828 0.454196 GGCGCACCGGTGATAATTTT 59.546 50.000 38.30 0.00 0.00 1.82
818 843 4.980805 GTGTTGTCTCGGGGCGCA 62.981 66.667 10.83 0.00 0.00 6.09
829 854 5.112129 CCTAGGGGCTTAAATAGTGTTGT 57.888 43.478 0.00 0.00 0.00 3.32
860 886 3.977617 CCCTACGGGCTAAGAGCATCTC 61.978 59.091 0.21 0.00 44.75 2.75
861 887 2.099166 CCCTACGGGCTAAGAGCATCT 61.099 57.143 0.21 0.00 44.75 2.90
862 888 0.318762 CCCTACGGGCTAAGAGCATC 59.681 60.000 0.21 0.00 44.75 3.91
863 889 2.442056 CCCTACGGGCTAAGAGCAT 58.558 57.895 0.21 0.00 44.75 3.79
864 890 3.950232 CCCTACGGGCTAAGAGCA 58.050 61.111 0.21 0.00 44.75 4.26
880 906 0.246360 GTGCAATAGGGGCAACAACC 59.754 55.000 0.00 0.00 43.91 3.77
1036 1066 2.585153 GGAAGGGGAGAAGGACGC 59.415 66.667 0.00 0.00 0.00 5.19
1477 1507 0.942410 TTCCGAAACAAGGAGACGCG 60.942 55.000 3.53 3.53 39.22 6.01
1621 1652 5.357878 TCACCACTACTTTATACGGTACCAG 59.642 44.000 13.54 7.45 0.00 4.00
1896 1927 4.377839 ACATGATGTTCTCTCCACGTAG 57.622 45.455 0.00 0.00 0.00 3.51
1961 1992 7.916552 AGACTACACACAGAAACAAATAACAC 58.083 34.615 0.00 0.00 0.00 3.32
1963 1994 9.221775 CAAAGACTACACACAGAAACAAATAAC 57.778 33.333 0.00 0.00 0.00 1.89
2632 2711 5.927819 ACCATGAACATGTGGAAAACAAAT 58.072 33.333 0.00 0.00 43.61 2.32
2905 3083 4.636206 AGAAGACTAAAGCTATTTTGCCCG 59.364 41.667 0.00 0.00 0.00 6.13
2957 3135 7.031226 TCATCATCTGCCAAAGCTAAATAAC 57.969 36.000 0.00 0.00 40.80 1.89
2996 3174 6.759356 ACCCAATTTTAACAAACAGCTAACAC 59.241 34.615 0.00 0.00 0.00 3.32
3047 4794 3.897325 GGTGAAAGCCTTTTTCGGTAAG 58.103 45.455 0.00 0.00 0.00 2.34
3086 4833 2.604914 GCAGTCTGTATGTCGATGGTTG 59.395 50.000 0.93 0.00 0.00 3.77
3121 4868 2.832661 TGCCTTGGGTGTGTGTGC 60.833 61.111 0.00 0.00 0.00 4.57
3194 4941 5.222048 TGCTTTGGGGTCTTATGTCTACTTT 60.222 40.000 0.00 0.00 0.00 2.66
3195 4942 4.288626 TGCTTTGGGGTCTTATGTCTACTT 59.711 41.667 0.00 0.00 0.00 2.24
3196 4943 3.844211 TGCTTTGGGGTCTTATGTCTACT 59.156 43.478 0.00 0.00 0.00 2.57
3771 5528 2.415625 GCCCTGTTCTAGTGTGTAGTCG 60.416 54.545 0.00 0.00 0.00 4.18
3808 5565 4.416848 ACCTCATCCTACCTTGGCATTAAT 59.583 41.667 0.00 0.00 0.00 1.40
3841 5599 3.011257 AGGAGCTTGGTTGGCCTAATTAA 59.989 43.478 3.32 0.00 35.27 1.40
3969 5732 6.127026 ACCTGTTCTCATCTTCAACCTATACC 60.127 42.308 0.00 0.00 0.00 2.73
3971 5734 6.440647 ACACCTGTTCTCATCTTCAACCTATA 59.559 38.462 0.00 0.00 0.00 1.31
4112 5893 6.642950 CGCTAAATAAATTGTGTTTGGGTTCA 59.357 34.615 0.00 0.00 0.00 3.18
4147 5928 7.466590 GCTTCTAGTGGCTTCTGTGATTTAATC 60.467 40.741 0.00 0.00 0.00 1.75
4445 6230 2.276732 TCTCCAAAGTGCCTTCCAAG 57.723 50.000 0.00 0.00 0.00 3.61
4505 6290 2.090760 TGCTTAAGCGCATCATCCAAA 58.909 42.857 21.97 0.00 45.83 3.28
4586 6371 9.813446 ACATAAGATAGGAGTAAAACCTAAACG 57.187 33.333 0.00 0.00 42.26 3.60
4615 6400 6.100424 AGACCACCCTATCAAGAAAATAGGAG 59.900 42.308 10.13 4.20 45.89 3.69
4683 6618 2.681848 CTCGGCTTGCTTCTTGATCAAT 59.318 45.455 8.96 0.00 0.00 2.57
4709 6644 3.885297 ACATATGGCTCCATACAGTTTGC 59.115 43.478 10.55 0.00 41.09 3.68
4777 6712 5.393678 GGGTTTAATGTTTATCGCACACCAT 60.394 40.000 0.00 0.00 0.00 3.55
4778 6713 4.082679 GGGTTTAATGTTTATCGCACACCA 60.083 41.667 0.00 0.00 0.00 4.17
4779 6714 4.417506 GGGTTTAATGTTTATCGCACACC 58.582 43.478 0.00 0.00 0.00 4.16
4800 6735 2.932614 CAGAATGTCTGTTTCGCTAGGG 59.067 50.000 0.00 0.00 39.58 3.53
4818 6753 5.120208 GTGCAAGTTATAGAAGCGTTTCAGA 59.880 40.000 14.70 2.01 35.70 3.27
4827 6762 4.589908 AGGGGTTGTGCAAGTTATAGAAG 58.410 43.478 0.00 0.00 0.00 2.85
4920 6855 0.873054 TCCACGACGACTCTGTTCTC 59.127 55.000 0.00 0.00 0.00 2.87
4947 6882 1.414181 CGGACCTTGGCTAGTGATCAT 59.586 52.381 0.00 0.00 0.00 2.45
4967 6902 2.027385 GAGAATTCCATGGAAGTGCCC 58.973 52.381 30.80 16.84 37.56 5.36
5015 6950 1.685820 CTCGAAGGCCCTTTCCCTT 59.314 57.895 0.00 0.00 45.09 3.95
5063 6998 3.729462 CGTCACTCTCTAGTAGCAACAGC 60.729 52.174 0.00 0.00 33.48 4.40
5082 7017 2.093625 TCGCATATTCACAAACAGCGTC 59.906 45.455 0.00 0.00 43.63 5.19
5085 7020 2.223340 CCCTCGCATATTCACAAACAGC 60.223 50.000 0.00 0.00 0.00 4.40
5086 7021 2.355756 CCCCTCGCATATTCACAAACAG 59.644 50.000 0.00 0.00 0.00 3.16
5087 7022 2.026729 TCCCCTCGCATATTCACAAACA 60.027 45.455 0.00 0.00 0.00 2.83
5088 7023 2.639065 TCCCCTCGCATATTCACAAAC 58.361 47.619 0.00 0.00 0.00 2.93
5089 7024 3.213506 CATCCCCTCGCATATTCACAAA 58.786 45.455 0.00 0.00 0.00 2.83
5100 7049 0.811616 CTAACACAGCATCCCCTCGC 60.812 60.000 0.00 0.00 0.00 5.03
5135 7084 7.052565 TGTTGCGTTATTTGTAGTACTAAGC 57.947 36.000 3.61 0.00 0.00 3.09
5140 7089 5.526010 AGCTGTTGCGTTATTTGTAGTAC 57.474 39.130 0.00 0.00 45.42 2.73
5143 7092 3.122948 ACGAGCTGTTGCGTTATTTGTAG 59.877 43.478 0.00 0.00 45.42 2.74
5147 7097 4.436852 CCATTACGAGCTGTTGCGTTATTT 60.437 41.667 3.36 0.00 45.42 1.40
5192 7142 6.588348 TCGTAACTGCATTGTATTCATCTG 57.412 37.500 0.00 0.00 0.00 2.90
5203 7153 1.130373 CGTGGCATTCGTAACTGCATT 59.870 47.619 0.00 0.00 40.18 3.56
5246 7196 2.668457 GACAAGTTACATGAGTCCAGCG 59.332 50.000 0.00 0.00 0.00 5.18
5249 7199 3.554129 CCACGACAAGTTACATGAGTCCA 60.554 47.826 0.00 0.00 0.00 4.02
5250 7200 2.993899 CCACGACAAGTTACATGAGTCC 59.006 50.000 0.00 0.00 0.00 3.85
5255 7205 6.422701 TCTTAGAAACCACGACAAGTTACATG 59.577 38.462 0.00 0.00 0.00 3.21
5259 7209 4.986659 GCTCTTAGAAACCACGACAAGTTA 59.013 41.667 0.00 0.00 0.00 2.24
5272 7222 4.711846 TCTGGCTGTAGATGCTCTTAGAAA 59.288 41.667 0.00 0.00 0.00 2.52
5274 7224 3.634448 GTCTGGCTGTAGATGCTCTTAGA 59.366 47.826 0.00 0.00 0.00 2.10
5278 7228 2.157640 AGTCTGGCTGTAGATGCTCT 57.842 50.000 0.00 0.00 0.00 4.09
5279 7229 2.548875 CAAGTCTGGCTGTAGATGCTC 58.451 52.381 0.00 0.00 0.00 4.26
5280 7230 1.209019 CCAAGTCTGGCTGTAGATGCT 59.791 52.381 0.00 0.00 35.39 3.79
5281 7231 1.661341 CCAAGTCTGGCTGTAGATGC 58.339 55.000 0.00 0.00 35.39 3.91
5291 7241 1.937546 GCCGGATTTGCCAAGTCTGG 61.938 60.000 20.36 20.36 46.65 3.86
5292 7242 1.508088 GCCGGATTTGCCAAGTCTG 59.492 57.895 5.05 1.97 35.94 3.51
5293 7243 4.002797 GCCGGATTTGCCAAGTCT 57.997 55.556 5.05 0.00 35.94 3.24
5301 7251 2.720134 ATTTGCGGGGCCGGATTTG 61.720 57.895 16.19 0.00 39.92 2.32
5302 7252 2.363665 ATTTGCGGGGCCGGATTT 60.364 55.556 16.19 0.00 39.92 2.17
5303 7253 3.146913 CATTTGCGGGGCCGGATT 61.147 61.111 16.19 0.00 39.92 3.01
5304 7254 4.440829 ACATTTGCGGGGCCGGAT 62.441 61.111 16.19 0.00 39.92 4.18
5315 7265 4.418401 CACGCCCGGGCACATTTG 62.418 66.667 42.78 28.12 42.06 2.32
5316 7266 4.966787 ACACGCCCGGGCACATTT 62.967 61.111 42.78 19.63 42.06 2.32
5339 7289 4.643387 AAGTGCCCGGTCAGTGCC 62.643 66.667 0.00 0.00 0.00 5.01
5340 7290 3.050275 GAAGTGCCCGGTCAGTGC 61.050 66.667 0.00 0.00 0.00 4.40
5341 7291 1.374758 GAGAAGTGCCCGGTCAGTG 60.375 63.158 0.00 0.00 0.00 3.66
5342 7292 1.407656 TTGAGAAGTGCCCGGTCAGT 61.408 55.000 0.00 0.00 0.00 3.41
5343 7293 0.250295 TTTGAGAAGTGCCCGGTCAG 60.250 55.000 0.00 0.00 0.00 3.51
5344 7294 0.400213 ATTTGAGAAGTGCCCGGTCA 59.600 50.000 0.00 0.00 0.00 4.02
5345 7295 0.804989 CATTTGAGAAGTGCCCGGTC 59.195 55.000 0.00 0.00 0.00 4.79
5346 7296 0.110486 ACATTTGAGAAGTGCCCGGT 59.890 50.000 0.00 0.00 0.00 5.28
5347 7297 1.068333 CAACATTTGAGAAGTGCCCGG 60.068 52.381 0.00 0.00 0.00 5.73
5348 7298 1.666888 GCAACATTTGAGAAGTGCCCG 60.667 52.381 0.00 0.00 0.00 6.13
5349 7299 1.666888 CGCAACATTTGAGAAGTGCCC 60.667 52.381 0.00 0.00 31.66 5.36
5350 7300 1.689959 CGCAACATTTGAGAAGTGCC 58.310 50.000 0.00 0.00 31.66 5.01
5351 7301 1.055338 GCGCAACATTTGAGAAGTGC 58.945 50.000 0.30 0.00 31.66 4.40
5352 7302 1.689959 GGCGCAACATTTGAGAAGTG 58.310 50.000 10.83 0.00 31.66 3.16
5353 7303 0.238289 CGGCGCAACATTTGAGAAGT 59.762 50.000 10.83 0.00 31.66 3.01
5354 7304 1.067199 GCGGCGCAACATTTGAGAAG 61.067 55.000 29.21 0.00 31.66 2.85
5355 7305 1.081509 GCGGCGCAACATTTGAGAA 60.082 52.632 29.21 0.00 31.66 2.87
5356 7306 1.585267 ATGCGGCGCAACATTTGAGA 61.585 50.000 39.46 11.65 43.62 3.27
5357 7307 0.098552 TATGCGGCGCAACATTTGAG 59.901 50.000 39.46 0.00 43.62 3.02
5358 7308 0.737804 ATATGCGGCGCAACATTTGA 59.262 45.000 39.46 17.37 43.62 2.69
5359 7309 1.122849 GATATGCGGCGCAACATTTG 58.877 50.000 39.46 0.00 43.62 2.32
5360 7310 0.030638 GGATATGCGGCGCAACATTT 59.969 50.000 39.46 24.18 43.62 2.32
5361 7311 1.100463 TGGATATGCGGCGCAACATT 61.100 50.000 39.46 24.59 43.62 2.71
5362 7312 1.525765 TGGATATGCGGCGCAACAT 60.526 52.632 39.46 31.74 43.62 2.71
5363 7313 2.124942 TGGATATGCGGCGCAACA 60.125 55.556 39.46 29.01 43.62 3.33
5364 7314 1.785041 ATGTGGATATGCGGCGCAAC 61.785 55.000 39.46 30.02 43.62 4.17
5365 7315 0.250081 TATGTGGATATGCGGCGCAA 60.250 50.000 39.46 26.50 43.62 4.85
5366 7316 0.948623 GTATGTGGATATGCGGCGCA 60.949 55.000 38.09 38.09 44.86 6.09
5367 7317 1.635663 GGTATGTGGATATGCGGCGC 61.636 60.000 27.44 27.44 0.00 6.53
5368 7318 1.351430 CGGTATGTGGATATGCGGCG 61.351 60.000 0.51 0.51 0.00 6.46
5369 7319 0.320421 ACGGTATGTGGATATGCGGC 60.320 55.000 0.00 0.00 0.00 6.53
5370 7320 3.306917 TTACGGTATGTGGATATGCGG 57.693 47.619 0.00 0.00 0.00 5.69
5371 7321 5.637810 AGAATTTACGGTATGTGGATATGCG 59.362 40.000 0.00 0.00 0.00 4.73
5372 7322 6.649141 TCAGAATTTACGGTATGTGGATATGC 59.351 38.462 0.00 0.00 0.00 3.14
5373 7323 8.777865 ATCAGAATTTACGGTATGTGGATATG 57.222 34.615 0.00 0.00 0.00 1.78
5374 7324 8.041323 GGATCAGAATTTACGGTATGTGGATAT 58.959 37.037 0.00 0.00 0.00 1.63
5375 7325 7.234782 AGGATCAGAATTTACGGTATGTGGATA 59.765 37.037 0.00 0.00 0.00 2.59
5376 7326 6.043243 AGGATCAGAATTTACGGTATGTGGAT 59.957 38.462 0.00 0.00 0.00 3.41
5377 7327 5.365605 AGGATCAGAATTTACGGTATGTGGA 59.634 40.000 0.00 0.00 0.00 4.02
5378 7328 5.611374 AGGATCAGAATTTACGGTATGTGG 58.389 41.667 0.00 0.00 0.00 4.17
5379 7329 7.207383 TGTAGGATCAGAATTTACGGTATGTG 58.793 38.462 0.00 0.00 0.00 3.21
5380 7330 7.356089 TGTAGGATCAGAATTTACGGTATGT 57.644 36.000 0.00 0.00 0.00 2.29
5381 7331 8.833231 ATTGTAGGATCAGAATTTACGGTATG 57.167 34.615 0.00 0.00 0.00 2.39
5382 7332 8.647796 TGATTGTAGGATCAGAATTTACGGTAT 58.352 33.333 0.00 0.00 32.50 2.73
5383 7333 8.014070 TGATTGTAGGATCAGAATTTACGGTA 57.986 34.615 0.00 0.00 32.50 4.02
5384 7334 6.884832 TGATTGTAGGATCAGAATTTACGGT 58.115 36.000 0.00 0.00 32.50 4.83
5385 7335 7.786178 TTGATTGTAGGATCAGAATTTACGG 57.214 36.000 0.00 0.00 37.35 4.02
5386 7336 7.800380 GCATTGATTGTAGGATCAGAATTTACG 59.200 37.037 0.00 0.00 37.35 3.18
5387 7337 8.623903 TGCATTGATTGTAGGATCAGAATTTAC 58.376 33.333 0.00 0.00 37.35 2.01
5388 7338 8.623903 GTGCATTGATTGTAGGATCAGAATTTA 58.376 33.333 0.00 0.00 37.35 1.40
5389 7339 7.486647 GTGCATTGATTGTAGGATCAGAATTT 58.513 34.615 0.00 0.00 37.35 1.82
5390 7340 6.238566 CGTGCATTGATTGTAGGATCAGAATT 60.239 38.462 0.00 0.00 37.35 2.17
5391 7341 5.237996 CGTGCATTGATTGTAGGATCAGAAT 59.762 40.000 0.00 0.00 37.35 2.40
5392 7342 4.571984 CGTGCATTGATTGTAGGATCAGAA 59.428 41.667 0.00 0.00 37.35 3.02
5393 7343 4.122046 CGTGCATTGATTGTAGGATCAGA 58.878 43.478 0.00 0.00 37.35 3.27
5394 7344 3.303593 GCGTGCATTGATTGTAGGATCAG 60.304 47.826 0.00 0.00 37.35 2.90
5395 7345 2.613595 GCGTGCATTGATTGTAGGATCA 59.386 45.455 0.00 0.00 34.37 2.92
5396 7346 2.874701 AGCGTGCATTGATTGTAGGATC 59.125 45.455 0.00 0.00 0.00 3.36
5397 7347 2.615447 CAGCGTGCATTGATTGTAGGAT 59.385 45.455 0.00 0.00 0.00 3.24
5398 7348 2.009051 CAGCGTGCATTGATTGTAGGA 58.991 47.619 0.00 0.00 0.00 2.94
5399 7349 2.009051 TCAGCGTGCATTGATTGTAGG 58.991 47.619 0.00 0.00 0.00 3.18
5400 7350 3.310501 TGATCAGCGTGCATTGATTGTAG 59.689 43.478 11.17 0.00 34.33 2.74
5401 7351 3.269178 TGATCAGCGTGCATTGATTGTA 58.731 40.909 11.17 2.08 34.33 2.41
5402 7352 2.086094 TGATCAGCGTGCATTGATTGT 58.914 42.857 11.17 0.00 34.33 2.71
5403 7353 2.836479 TGATCAGCGTGCATTGATTG 57.164 45.000 11.17 1.72 34.33 2.67
5404 7354 3.059393 CGTATGATCAGCGTGCATTGATT 60.059 43.478 12.56 2.18 34.33 2.57
5405 7355 2.477754 CGTATGATCAGCGTGCATTGAT 59.522 45.455 12.56 10.06 36.77 2.57
5406 7356 1.860326 CGTATGATCAGCGTGCATTGA 59.140 47.619 12.56 0.00 0.00 2.57
5407 7357 1.860326 TCGTATGATCAGCGTGCATTG 59.140 47.619 17.97 0.00 0.00 2.82
5408 7358 2.223537 TCGTATGATCAGCGTGCATT 57.776 45.000 17.97 0.00 0.00 3.56
5409 7359 2.445565 ATCGTATGATCAGCGTGCAT 57.554 45.000 17.97 6.04 0.00 3.96
5410 7360 2.034053 TGTATCGTATGATCAGCGTGCA 59.966 45.455 17.97 13.26 35.99 4.57
5411 7361 2.661594 TGTATCGTATGATCAGCGTGC 58.338 47.619 17.97 11.53 35.99 5.34
5412 7362 5.829233 ATTTGTATCGTATGATCAGCGTG 57.171 39.130 17.97 2.37 35.99 5.34
5413 7363 5.753438 ACAATTTGTATCGTATGATCAGCGT 59.247 36.000 17.97 10.61 35.99 5.07
5414 7364 6.215477 ACAATTTGTATCGTATGATCAGCG 57.785 37.500 14.08 14.08 35.99 5.18
5415 7365 6.787515 CGAACAATTTGTATCGTATGATCAGC 59.212 38.462 17.97 0.00 35.99 4.26
5416 7366 8.061125 TCGAACAATTTGTATCGTATGATCAG 57.939 34.615 21.87 0.00 35.99 2.90
5417 7367 7.995463 TCGAACAATTTGTATCGTATGATCA 57.005 32.000 21.87 0.00 35.99 2.92
5418 7368 9.864034 AATTCGAACAATTTGTATCGTATGATC 57.136 29.630 21.87 7.56 35.99 2.92
5420 7370 9.697250 GAAATTCGAACAATTTGTATCGTATGA 57.303 29.630 21.87 13.33 34.74 2.15
5421 7371 9.484326 TGAAATTCGAACAATTTGTATCGTATG 57.516 29.630 21.87 4.64 34.74 2.39
5423 7373 9.880064 TTTGAAATTCGAACAATTTGTATCGTA 57.120 25.926 21.87 17.14 34.74 3.43
5424 7374 8.789881 TTTGAAATTCGAACAATTTGTATCGT 57.210 26.923 21.87 11.19 34.74 3.73
5425 7375 8.901748 ACTTTGAAATTCGAACAATTTGTATCG 58.098 29.630 19.18 19.18 34.58 2.92
5429 7379 9.360093 TGTTACTTTGAAATTCGAACAATTTGT 57.640 25.926 0.00 0.00 30.68 2.83
5434 7384 9.193133 TGTTTTGTTACTTTGAAATTCGAACAA 57.807 25.926 0.00 0.00 34.48 2.83
5435 7385 8.744008 TGTTTTGTTACTTTGAAATTCGAACA 57.256 26.923 0.00 0.00 0.00 3.18
5438 7388 8.376942 GCTTTGTTTTGTTACTTTGAAATTCGA 58.623 29.630 0.00 0.00 0.00 3.71
5439 7389 8.165428 TGCTTTGTTTTGTTACTTTGAAATTCG 58.835 29.630 0.00 0.00 0.00 3.34
5440 7390 9.818796 TTGCTTTGTTTTGTTACTTTGAAATTC 57.181 25.926 0.00 0.00 0.00 2.17
5443 7393 9.818796 GATTTGCTTTGTTTTGTTACTTTGAAA 57.181 25.926 0.00 0.00 0.00 2.69
5444 7394 8.993121 TGATTTGCTTTGTTTTGTTACTTTGAA 58.007 25.926 0.00 0.00 0.00 2.69
5445 7395 8.539770 TGATTTGCTTTGTTTTGTTACTTTGA 57.460 26.923 0.00 0.00 0.00 2.69
5448 7398 9.816354 ACTATGATTTGCTTTGTTTTGTTACTT 57.184 25.926 0.00 0.00 0.00 2.24
5449 7399 9.816354 AACTATGATTTGCTTTGTTTTGTTACT 57.184 25.926 0.00 0.00 0.00 2.24
5451 7401 9.809096 TGAACTATGATTTGCTTTGTTTTGTTA 57.191 25.926 0.00 0.00 0.00 2.41
5452 7402 8.715191 TGAACTATGATTTGCTTTGTTTTGTT 57.285 26.923 0.00 0.00 0.00 2.83
5453 7403 8.603181 GTTGAACTATGATTTGCTTTGTTTTGT 58.397 29.630 0.00 0.00 0.00 2.83
5454 7404 8.602328 TGTTGAACTATGATTTGCTTTGTTTTG 58.398 29.630 0.00 0.00 0.00 2.44
5455 7405 8.715191 TGTTGAACTATGATTTGCTTTGTTTT 57.285 26.923 0.00 0.00 0.00 2.43
5456 7406 8.715191 TTGTTGAACTATGATTTGCTTTGTTT 57.285 26.923 0.00 0.00 0.00 2.83
5457 7407 8.603181 GTTTGTTGAACTATGATTTGCTTTGTT 58.397 29.630 0.00 0.00 35.31 2.83
5458 7408 7.224557 GGTTTGTTGAACTATGATTTGCTTTGT 59.775 33.333 0.00 0.00 38.35 2.83
5459 7409 7.224362 TGGTTTGTTGAACTATGATTTGCTTTG 59.776 33.333 0.00 0.00 38.35 2.77
5460 7410 7.271511 TGGTTTGTTGAACTATGATTTGCTTT 58.728 30.769 0.00 0.00 38.35 3.51
5461 7411 6.815089 TGGTTTGTTGAACTATGATTTGCTT 58.185 32.000 0.00 0.00 38.35 3.91
5462 7412 6.265196 TCTGGTTTGTTGAACTATGATTTGCT 59.735 34.615 0.00 0.00 38.35 3.91
5463 7413 6.363357 GTCTGGTTTGTTGAACTATGATTTGC 59.637 38.462 0.00 0.00 38.35 3.68
5464 7414 7.424803 TGTCTGGTTTGTTGAACTATGATTTG 58.575 34.615 0.00 0.00 38.35 2.32
5465 7415 7.581213 TGTCTGGTTTGTTGAACTATGATTT 57.419 32.000 0.00 0.00 38.35 2.17
5466 7416 7.596494 CATGTCTGGTTTGTTGAACTATGATT 58.404 34.615 0.00 0.00 38.35 2.57
5467 7417 6.349611 GCATGTCTGGTTTGTTGAACTATGAT 60.350 38.462 0.00 0.00 38.35 2.45
5468 7418 5.048782 GCATGTCTGGTTTGTTGAACTATGA 60.049 40.000 0.00 0.00 38.35 2.15
5469 7419 5.156355 GCATGTCTGGTTTGTTGAACTATG 58.844 41.667 0.00 0.00 38.35 2.23
5470 7420 4.218417 GGCATGTCTGGTTTGTTGAACTAT 59.782 41.667 0.00 0.00 38.35 2.12
5471 7421 3.568007 GGCATGTCTGGTTTGTTGAACTA 59.432 43.478 0.00 0.00 38.35 2.24
5472 7422 2.362077 GGCATGTCTGGTTTGTTGAACT 59.638 45.455 0.00 0.00 38.35 3.01
5473 7423 2.100584 TGGCATGTCTGGTTTGTTGAAC 59.899 45.455 0.00 0.00 37.53 3.18
5474 7424 2.382882 TGGCATGTCTGGTTTGTTGAA 58.617 42.857 0.00 0.00 0.00 2.69
5475 7425 2.064434 TGGCATGTCTGGTTTGTTGA 57.936 45.000 0.00 0.00 0.00 3.18
5476 7426 2.159128 TGTTGGCATGTCTGGTTTGTTG 60.159 45.455 0.00 0.00 0.00 3.33
5477 7427 2.106566 TGTTGGCATGTCTGGTTTGTT 58.893 42.857 0.00 0.00 0.00 2.83
5478 7428 1.774110 TGTTGGCATGTCTGGTTTGT 58.226 45.000 0.00 0.00 0.00 2.83
5479 7429 3.507233 AGTATGTTGGCATGTCTGGTTTG 59.493 43.478 0.00 0.00 36.58 2.93
5480 7430 3.766545 AGTATGTTGGCATGTCTGGTTT 58.233 40.909 0.00 0.00 36.58 3.27
5481 7431 3.439857 AGTATGTTGGCATGTCTGGTT 57.560 42.857 0.00 0.00 36.58 3.67
5482 7432 3.439857 AAGTATGTTGGCATGTCTGGT 57.560 42.857 0.00 0.00 36.58 4.00
5483 7433 3.758023 TGAAAGTATGTTGGCATGTCTGG 59.242 43.478 0.00 0.00 36.58 3.86
5484 7434 4.696877 TCTGAAAGTATGTTGGCATGTCTG 59.303 41.667 0.00 0.00 36.58 3.51
5485 7435 4.910195 TCTGAAAGTATGTTGGCATGTCT 58.090 39.130 0.00 0.00 36.58 3.41
5486 7436 4.697352 ACTCTGAAAGTATGTTGGCATGTC 59.303 41.667 0.00 0.00 36.07 3.06
5487 7437 4.655963 ACTCTGAAAGTATGTTGGCATGT 58.344 39.130 0.00 0.00 36.07 3.21
5488 7438 5.181811 TGAACTCTGAAAGTATGTTGGCATG 59.818 40.000 0.00 0.00 37.17 4.06
5489 7439 5.316167 TGAACTCTGAAAGTATGTTGGCAT 58.684 37.500 0.00 0.00 37.17 4.40
5490 7440 4.713553 TGAACTCTGAAAGTATGTTGGCA 58.286 39.130 0.00 0.00 37.17 4.92
5491 7441 5.689383 TTGAACTCTGAAAGTATGTTGGC 57.311 39.130 0.00 0.00 37.17 4.52
5492 7442 7.479980 TGTTTTGAACTCTGAAAGTATGTTGG 58.520 34.615 0.00 0.00 37.17 3.77
5493 7443 8.909708 TTGTTTTGAACTCTGAAAGTATGTTG 57.090 30.769 0.00 0.00 37.17 3.33
5494 7444 9.921637 TTTTGTTTTGAACTCTGAAAGTATGTT 57.078 25.926 0.00 0.00 37.17 2.71
5495 7445 9.353999 GTTTTGTTTTGAACTCTGAAAGTATGT 57.646 29.630 0.00 0.00 37.17 2.29
5496 7446 9.352784 TGTTTTGTTTTGAACTCTGAAAGTATG 57.647 29.630 0.00 0.00 37.17 2.39
5497 7447 9.921637 TTGTTTTGTTTTGAACTCTGAAAGTAT 57.078 25.926 0.00 0.00 37.17 2.12
5498 7448 9.751542 TTTGTTTTGTTTTGAACTCTGAAAGTA 57.248 25.926 0.00 0.00 37.17 2.24
5499 7449 8.655651 TTTGTTTTGTTTTGAACTCTGAAAGT 57.344 26.923 0.00 0.00 41.10 2.66
5500 7450 7.741652 GCTTTGTTTTGTTTTGAACTCTGAAAG 59.258 33.333 0.00 0.00 0.00 2.62
5501 7451 7.225538 TGCTTTGTTTTGTTTTGAACTCTGAAA 59.774 29.630 0.00 0.00 0.00 2.69
5502 7452 6.703607 TGCTTTGTTTTGTTTTGAACTCTGAA 59.296 30.769 0.00 0.00 0.00 3.02
5503 7453 6.219473 TGCTTTGTTTTGTTTTGAACTCTGA 58.781 32.000 0.00 0.00 0.00 3.27
5504 7454 6.464895 TGCTTTGTTTTGTTTTGAACTCTG 57.535 33.333 0.00 0.00 0.00 3.35
5505 7455 7.489574 TTTGCTTTGTTTTGTTTTGAACTCT 57.510 28.000 0.00 0.00 0.00 3.24
5506 7456 8.014517 TGATTTGCTTTGTTTTGTTTTGAACTC 58.985 29.630 0.00 0.00 0.00 3.01
5550 7500 5.636965 CGGACATTGATTTTATTTTGGCACA 59.363 36.000 0.00 0.00 0.00 4.57
5551 7501 5.866633 TCGGACATTGATTTTATTTTGGCAC 59.133 36.000 0.00 0.00 0.00 5.01
5599 7549 1.153369 GGAGCACGCATCTAGCCAA 60.153 57.895 0.00 0.00 41.38 4.52
5637 7587 3.138625 CGGTCCGGATGTAGGCAT 58.861 61.111 7.81 0.00 38.18 4.40
5643 7623 2.764128 ATGAGGCGGTCCGGATGT 60.764 61.111 14.38 0.00 37.47 3.06
5698 7702 4.706035 AGATCAACGACCGTAGAGAGTAT 58.294 43.478 0.00 0.00 0.00 2.12
5732 7751 0.169672 CATGCGAAGAAGTGGCTTGG 59.830 55.000 0.00 0.00 33.93 3.61
5781 7803 0.595310 GACGCGGAAGATGCTAGGAC 60.595 60.000 12.47 0.00 0.00 3.85
5806 7828 4.511527 TGAGAAGGAGATGTTGCATCTTC 58.488 43.478 12.22 10.54 0.00 2.87
5831 7853 3.063997 CCAAGACATTTGGCGACATAGAC 59.936 47.826 0.00 0.00 42.32 2.59
5904 7934 3.868077 CGGAGAAGAAGCTCGAAATTGAT 59.132 43.478 0.00 0.00 35.74 2.57
5928 7958 0.536687 TGGAGTGAGACCGAACGAGT 60.537 55.000 0.00 0.00 0.00 4.18
5932 7962 3.320673 AAAGATGGAGTGAGACCGAAC 57.679 47.619 0.00 0.00 0.00 3.95
5958 7989 1.063649 GCTCATGTTGGATGCGCAG 59.936 57.895 18.32 0.00 30.80 5.18
5987 8018 4.455070 TCGATGAGGGAGAATAAGGAGA 57.545 45.455 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.