Multiple sequence alignment - TraesCS7D01G328500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G328500 chr7D 100.000 5940 0 0 1 5940 420086353 420092292 0.000000e+00 10970.0
1 TraesCS7D01G328500 chr7D 91.358 162 14 0 3506 3667 84347710 84347871 7.750000e-54 222.0
2 TraesCS7D01G328500 chr7D 90.909 165 15 0 3506 3670 397555077 397554913 7.750000e-54 222.0
3 TraesCS7D01G328500 chr7B 95.958 3563 82 21 1 3507 436082191 436085747 0.000000e+00 5725.0
4 TraesCS7D01G328500 chr7B 96.939 784 17 5 3666 4446 436085746 436086525 0.000000e+00 1308.0
5 TraesCS7D01G328500 chr7B 93.245 829 37 8 4442 5269 436086797 436087607 0.000000e+00 1203.0
6 TraesCS7D01G328500 chr7B 87.302 252 21 7 5621 5862 436089629 436089879 1.630000e-70 278.0
7 TraesCS7D01G328500 chr7B 92.537 134 10 0 5409 5542 254383053 254382920 6.080000e-45 193.0
8 TraesCS7D01G328500 chr7B 91.743 109 6 3 5314 5420 425252076 425252183 1.330000e-31 148.0
9 TraesCS7D01G328500 chr7B 92.233 103 6 2 5314 5415 143328204 143328305 1.730000e-30 145.0
10 TraesCS7D01G328500 chr7A 91.129 2559 159 31 951 3465 512764218 512761684 0.000000e+00 3406.0
11 TraesCS7D01G328500 chr7A 85.714 798 53 26 3666 4414 512761650 512760865 0.000000e+00 785.0
12 TraesCS7D01G328500 chr7A 86.907 527 56 9 4741 5261 512760613 512760094 3.990000e-161 579.0
13 TraesCS7D01G328500 chr7A 94.079 152 3 4 4487 4636 512760845 512760698 5.990000e-55 226.0
14 TraesCS7D01G328500 chr7A 94.737 133 6 1 5408 5540 426754115 426753984 7.800000e-49 206.0
15 TraesCS7D01G328500 chr7A 91.429 140 10 2 5403 5542 634386547 634386684 2.180000e-44 191.0
16 TraesCS7D01G328500 chr7A 84.000 175 23 4 5377 5547 669773902 669774075 4.760000e-36 163.0
17 TraesCS7D01G328500 chr7A 100.000 28 0 0 415 442 642935777 642935804 1.100000e-02 52.8
18 TraesCS7D01G328500 chr4A 91.566 166 13 1 3506 3671 614112477 614112313 1.670000e-55 228.0
19 TraesCS7D01G328500 chr1D 90.964 166 15 0 3506 3671 118824110 118824275 2.150000e-54 224.0
20 TraesCS7D01G328500 chr1D 93.814 97 6 0 5314 5410 433249873 433249777 4.800000e-31 147.0
21 TraesCS7D01G328500 chr5B 90.909 165 15 0 3506 3670 612672984 612672820 7.750000e-54 222.0
22 TraesCS7D01G328500 chr5B 83.404 235 32 5 961 1193 314305476 314305247 1.680000e-50 211.0
23 TraesCS7D01G328500 chr5B 87.755 147 16 1 5396 5540 78229359 78229213 2.850000e-38 171.0
24 TraesCS7D01G328500 chr1A 91.358 162 14 0 3506 3667 181769588 181769427 7.750000e-54 222.0
25 TraesCS7D01G328500 chr2D 90.000 170 17 0 3499 3668 352948003 352947834 2.790000e-53 220.0
26 TraesCS7D01G328500 chr2D 93.069 101 7 0 5314 5414 52051383 52051483 1.330000e-31 148.0
27 TraesCS7D01G328500 chrUn 88.764 178 17 3 3496 3671 311695446 311695270 1.300000e-51 215.0
28 TraesCS7D01G328500 chr6D 88.636 176 19 1 3501 3676 428647461 428647287 4.660000e-51 213.0
29 TraesCS7D01G328500 chr6D 100.000 28 0 0 415 442 469968172 469968145 1.100000e-02 52.8
30 TraesCS7D01G328500 chr5D 83.475 236 30 7 961 1193 276941466 276941237 1.680000e-50 211.0
31 TraesCS7D01G328500 chr5A 82.979 235 33 5 961 1193 365673280 365673051 7.800000e-49 206.0
32 TraesCS7D01G328500 chr5A 93.182 132 8 1 5408 5539 436878048 436877918 6.080000e-45 193.0
33 TraesCS7D01G328500 chr3B 91.489 141 10 2 5413 5552 460753460 460753599 6.080000e-45 193.0
34 TraesCS7D01G328500 chr3A 93.750 128 8 0 5413 5540 52198856 52198983 6.080000e-45 193.0
35 TraesCS7D01G328500 chr3A 89.103 156 12 5 5407 5562 534478921 534478771 7.860000e-44 189.0
36 TraesCS7D01G328500 chr1B 92.366 131 10 0 5413 5543 277456299 277456429 2.830000e-43 187.0
37 TraesCS7D01G328500 chr1B 100.000 29 0 0 414 442 419950654 419950682 3.000000e-03 54.7
38 TraesCS7D01G328500 chr4B 88.742 151 15 2 5402 5552 108418028 108417880 3.660000e-42 183.0
39 TraesCS7D01G328500 chr4B 84.810 158 15 3 5314 5470 612274924 612274775 3.710000e-32 150.0
40 TraesCS7D01G328500 chr4D 94.059 101 5 1 5314 5414 482704207 482704108 1.030000e-32 152.0
41 TraesCS7D01G328500 chr4D 93.814 97 6 0 5314 5410 13198285 13198381 4.800000e-31 147.0
42 TraesCS7D01G328500 chr2A 94.737 95 5 0 5314 5408 68155917 68155823 1.330000e-31 148.0
43 TraesCS7D01G328500 chr3D 93.878 98 5 1 5314 5410 71512905 71512808 4.800000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G328500 chr7D 420086353 420092292 5939 False 10970.0 10970 100.00000 1 5940 1 chr7D.!!$F2 5939
1 TraesCS7D01G328500 chr7B 436082191 436089879 7688 False 2128.5 5725 93.36100 1 5862 4 chr7B.!!$F3 5861
2 TraesCS7D01G328500 chr7A 512760094 512764218 4124 True 1249.0 3406 89.45725 951 5261 4 chr7A.!!$R2 4310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.250727 TGCCAGTGGTTCTACTTGCC 60.251 55.000 11.74 0.0 38.25 4.52 F
754 770 0.613260 AAAGCATGAGTACAGGGCGA 59.387 50.000 0.00 0.0 36.07 5.54 F
1939 1978 2.309613 TGCACCATCTTGCTTCTTTGT 58.690 42.857 0.00 0.0 43.41 2.83 F
2925 3004 2.092968 TGTCTGTTGACTGCTGGTCTTT 60.093 45.455 10.66 0.0 44.74 2.52 F
4069 4166 1.486211 ACTCCTTACCACCATCTCCG 58.514 55.000 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1143 1170 2.508928 CACCCGGACACCACAGTT 59.491 61.111 0.73 0.00 0.0 3.16 R
2144 2208 2.225491 ACCAACGTACATGCACACAATC 59.775 45.455 0.00 0.00 0.0 2.67 R
3162 3241 1.084289 GGCCCTGTAAATGTGACGTC 58.916 55.000 9.11 9.11 0.0 4.34 R
4672 5098 1.002274 AGCCTAGACCCTCCCTGTG 59.998 63.158 0.00 0.00 0.0 3.66 R
5633 7894 0.319813 GGCATGCTTGGTTTGTGGAC 60.320 55.000 18.92 0.00 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.875059 GTGCCAGTGGTTCTACTTGC 59.125 55.000 11.74 5.67 39.16 4.01
39 40 0.250727 TGCCAGTGGTTCTACTTGCC 60.251 55.000 11.74 0.00 38.25 4.52
56 57 1.450312 CCAGTGGTTCGATCTGCCC 60.450 63.158 0.00 0.00 0.00 5.36
96 97 5.994887 TTCTGCGTTTAAACTAGCTGAAA 57.005 34.783 24.46 15.09 41.92 2.69
131 132 6.475504 TCTCTGGTTTGCTTGATGATTTCTA 58.524 36.000 0.00 0.00 0.00 2.10
167 168 4.808558 TCTGGCATTTTTCGATTTTGAGG 58.191 39.130 0.00 0.00 0.00 3.86
190 191 4.571148 GGGGTAATTTCCCTTCCTTTAGCA 60.571 45.833 18.68 0.00 46.27 3.49
191 192 5.020795 GGGTAATTTCCCTTCCTTTAGCAA 58.979 41.667 12.74 0.00 43.85 3.91
192 193 5.661312 GGGTAATTTCCCTTCCTTTAGCAAT 59.339 40.000 12.74 0.00 43.85 3.56
243 244 7.088272 TGCATCTTTGTGAGAAAATGATTCTG 58.912 34.615 0.00 0.00 38.06 3.02
319 320 3.366374 GGGATCTGTGCTGTTTTGTTAGC 60.366 47.826 0.00 0.00 40.29 3.09
360 362 7.345691 TCAAGTTTCCAATCATGCCTTATCTA 58.654 34.615 0.00 0.00 0.00 1.98
407 419 2.158608 AGGGGGCAGTAAATAGCATGAC 60.159 50.000 0.00 0.00 0.00 3.06
447 459 6.088749 GCTAAAGCACGTCTAGATGTCATATG 59.911 42.308 14.87 5.00 41.59 1.78
449 461 5.973899 AGCACGTCTAGATGTCATATGAT 57.026 39.130 14.87 0.00 0.00 2.45
510 526 8.050778 TCAATCATTAGTAAACCAACCACATC 57.949 34.615 0.00 0.00 0.00 3.06
526 542 5.197451 ACCACATCCACAAAACAAGACTTA 58.803 37.500 0.00 0.00 0.00 2.24
531 547 3.949113 TCCACAAAACAAGACTTACACCC 59.051 43.478 0.00 0.00 0.00 4.61
535 551 5.977129 CACAAAACAAGACTTACACCCAATC 59.023 40.000 0.00 0.00 0.00 2.67
536 552 5.068591 ACAAAACAAGACTTACACCCAATCC 59.931 40.000 0.00 0.00 0.00 3.01
633 649 5.890334 TGTCATTGGAACTTGTTGACTTTC 58.110 37.500 0.00 0.00 38.00 2.62
731 747 6.431234 ACCAACTAAAGCCTAAAACTGAGATG 59.569 38.462 0.00 0.00 0.00 2.90
754 770 0.613260 AAAGCATGAGTACAGGGCGA 59.387 50.000 0.00 0.00 36.07 5.54
828 844 6.000219 AGTAGTTTGCTTGAGAATGTCATGT 59.000 36.000 0.00 0.00 34.17 3.21
833 849 7.229306 AGTTTGCTTGAGAATGTCATGTTTAGA 59.771 33.333 0.00 0.00 34.17 2.10
842 858 6.313905 AGAATGTCATGTTTAGAACCTTAGCG 59.686 38.462 0.00 0.00 0.00 4.26
1205 1232 5.651530 CTCTGGTACGTATGTTCAGATTGT 58.348 41.667 16.25 0.00 36.92 2.71
1231 1258 6.377996 TGCTGTGTTATTGCATTTCTAGGAAT 59.622 34.615 0.00 0.00 0.00 3.01
1251 1278 5.300286 GGAATTGTAAATGTAGAGGCATGCT 59.700 40.000 18.92 3.20 0.00 3.79
1256 1283 7.880160 TGTAAATGTAGAGGCATGCTAATTT 57.120 32.000 18.92 15.15 0.00 1.82
1258 1285 8.190122 TGTAAATGTAGAGGCATGCTAATTTTG 58.810 33.333 18.92 0.00 0.00 2.44
1507 1534 5.468746 TCCAGATCTGTTGTAACCTTTTTCG 59.531 40.000 21.11 0.45 0.00 3.46
1525 1552 3.319137 TCGCAGCAGAAACTGTAAGAT 57.681 42.857 0.00 0.00 39.96 2.40
1721 1756 8.742125 ATCCTAGGATGATATGGTAACTGAAA 57.258 34.615 23.95 0.00 32.98 2.69
1936 1975 3.225104 TCTTTGCACCATCTTGCTTCTT 58.775 40.909 0.00 0.00 43.41 2.52
1939 1978 2.309613 TGCACCATCTTGCTTCTTTGT 58.690 42.857 0.00 0.00 43.41 2.83
1941 1980 3.888323 TGCACCATCTTGCTTCTTTGTTA 59.112 39.130 0.00 0.00 43.41 2.41
1942 1981 4.523943 TGCACCATCTTGCTTCTTTGTTAT 59.476 37.500 0.00 0.00 43.41 1.89
1943 1982 4.860907 GCACCATCTTGCTTCTTTGTTATG 59.139 41.667 0.00 0.00 39.59 1.90
1955 2006 7.659799 TGCTTCTTTGTTATGCTGTTTCTAGTA 59.340 33.333 0.00 0.00 0.00 1.82
2137 2201 9.379791 AGTTTTAGTATTCGAGGTTATTCTTGG 57.620 33.333 0.00 0.00 0.00 3.61
2144 2208 5.073311 TCGAGGTTATTCTTGGTCTTCTG 57.927 43.478 0.00 0.00 0.00 3.02
2173 2237 2.607187 CATGTACGTTGGTCTGAGTCC 58.393 52.381 0.00 0.00 0.00 3.85
2603 2672 2.939103 ACGAGAAATAGCCAAGCATGAC 59.061 45.455 0.00 0.00 0.00 3.06
2672 2741 8.498054 TTGATGTAAGAACCATCTCTTGATTC 57.502 34.615 0.00 0.00 39.54 2.52
2722 2791 5.048153 TCGTATTCTGATCTATGCCTTCG 57.952 43.478 0.00 0.00 0.00 3.79
2819 2888 7.833682 TCATGTTGGTGATGGTATGTTAAGAAT 59.166 33.333 0.00 0.00 0.00 2.40
2863 2941 8.178313 TCCGTATAATGTTCACAGATCATAGT 57.822 34.615 0.00 0.00 0.00 2.12
2925 3004 2.092968 TGTCTGTTGACTGCTGGTCTTT 60.093 45.455 10.66 0.00 44.74 2.52
3031 3110 6.798482 TGCCATTATTGTTGATTCATCAGAC 58.202 36.000 0.00 0.00 38.19 3.51
3130 3209 3.517901 TCCTGTAGGGTTGACTTACATGG 59.482 47.826 0.00 0.00 36.25 3.66
3491 3570 9.626045 CAGGTTTTATTTTATTGTTCAGTCTCC 57.374 33.333 0.00 0.00 0.00 3.71
3505 3589 3.764434 TCAGTCTCCGCTCTCAAATACTT 59.236 43.478 0.00 0.00 0.00 2.24
3506 3590 4.948004 TCAGTCTCCGCTCTCAAATACTTA 59.052 41.667 0.00 0.00 0.00 2.24
3507 3591 5.038033 CAGTCTCCGCTCTCAAATACTTAC 58.962 45.833 0.00 0.00 0.00 2.34
3508 3592 4.951094 AGTCTCCGCTCTCAAATACTTACT 59.049 41.667 0.00 0.00 0.00 2.24
3509 3593 5.419471 AGTCTCCGCTCTCAAATACTTACTT 59.581 40.000 0.00 0.00 0.00 2.24
3510 3594 5.744819 GTCTCCGCTCTCAAATACTTACTTC 59.255 44.000 0.00 0.00 0.00 3.01
3511 3595 5.007385 TCCGCTCTCAAATACTTACTTCC 57.993 43.478 0.00 0.00 0.00 3.46
3512 3596 4.710375 TCCGCTCTCAAATACTTACTTCCT 59.290 41.667 0.00 0.00 0.00 3.36
3513 3597 5.044558 CCGCTCTCAAATACTTACTTCCTC 58.955 45.833 0.00 0.00 0.00 3.71
3514 3598 5.044558 CGCTCTCAAATACTTACTTCCTCC 58.955 45.833 0.00 0.00 0.00 4.30
3515 3599 5.044558 GCTCTCAAATACTTACTTCCTCCG 58.955 45.833 0.00 0.00 0.00 4.63
3516 3600 5.394333 GCTCTCAAATACTTACTTCCTCCGT 60.394 44.000 0.00 0.00 0.00 4.69
3517 3601 6.600882 TCTCAAATACTTACTTCCTCCGTT 57.399 37.500 0.00 0.00 0.00 4.44
3518 3602 6.628185 TCTCAAATACTTACTTCCTCCGTTC 58.372 40.000 0.00 0.00 0.00 3.95
3519 3603 5.727434 TCAAATACTTACTTCCTCCGTTCC 58.273 41.667 0.00 0.00 0.00 3.62
3520 3604 5.482878 TCAAATACTTACTTCCTCCGTTCCT 59.517 40.000 0.00 0.00 0.00 3.36
3521 3605 6.664816 TCAAATACTTACTTCCTCCGTTCCTA 59.335 38.462 0.00 0.00 0.00 2.94
3522 3606 7.178983 TCAAATACTTACTTCCTCCGTTCCTAA 59.821 37.037 0.00 0.00 0.00 2.69
3523 3607 7.486407 AATACTTACTTCCTCCGTTCCTAAA 57.514 36.000 0.00 0.00 0.00 1.85
3524 3608 7.672122 ATACTTACTTCCTCCGTTCCTAAAT 57.328 36.000 0.00 0.00 0.00 1.40
3525 3609 8.773033 ATACTTACTTCCTCCGTTCCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
3526 3610 7.672122 ACTTACTTCCTCCGTTCCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
3527 3611 8.773033 ACTTACTTCCTCCGTTCCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
3528 3612 9.205513 ACTTACTTCCTCCGTTCCTAAATATAA 57.794 33.333 0.00 0.00 0.00 0.98
3529 3613 9.694137 CTTACTTCCTCCGTTCCTAAATATAAG 57.306 37.037 0.00 0.00 0.00 1.73
3530 3614 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3531 3615 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3532 3616 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3533 3617 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3534 3618 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
3535 3619 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
3536 3620 9.043079 CCTCCGTTCCTAAATATAAGTCTTTTC 57.957 37.037 0.00 0.00 0.00 2.29
3537 3621 9.595823 CTCCGTTCCTAAATATAAGTCTTTTCA 57.404 33.333 0.00 0.00 0.00 2.69
3538 3622 9.595823 TCCGTTCCTAAATATAAGTCTTTTCAG 57.404 33.333 0.00 0.00 0.00 3.02
3539 3623 9.595823 CCGTTCCTAAATATAAGTCTTTTCAGA 57.404 33.333 0.00 0.00 0.00 3.27
3551 3635 5.936054 AGTCTTTTCAGAGATTTCAATGCG 58.064 37.500 0.00 0.00 0.00 4.73
3552 3636 5.091431 GTCTTTTCAGAGATTTCAATGCGG 58.909 41.667 0.00 0.00 0.00 5.69
3553 3637 5.003160 TCTTTTCAGAGATTTCAATGCGGA 58.997 37.500 0.00 0.00 0.00 5.54
3554 3638 4.685169 TTTCAGAGATTTCAATGCGGAC 57.315 40.909 0.00 0.00 0.00 4.79
3555 3639 3.616956 TCAGAGATTTCAATGCGGACT 57.383 42.857 0.00 0.00 0.00 3.85
3556 3640 4.736126 TCAGAGATTTCAATGCGGACTA 57.264 40.909 0.00 0.00 0.00 2.59
3557 3641 4.433615 TCAGAGATTTCAATGCGGACTAC 58.566 43.478 0.00 0.00 0.00 2.73
3558 3642 4.081697 TCAGAGATTTCAATGCGGACTACA 60.082 41.667 0.00 0.00 0.00 2.74
3559 3643 4.813161 CAGAGATTTCAATGCGGACTACAT 59.187 41.667 0.00 0.00 0.00 2.29
3560 3644 5.985530 CAGAGATTTCAATGCGGACTACATA 59.014 40.000 0.00 0.00 0.00 2.29
3561 3645 5.986135 AGAGATTTCAATGCGGACTACATAC 59.014 40.000 0.00 0.00 0.00 2.39
3562 3646 4.745125 AGATTTCAATGCGGACTACATACG 59.255 41.667 0.00 0.00 0.00 3.06
3563 3647 2.502213 TCAATGCGGACTACATACGG 57.498 50.000 0.00 0.00 0.00 4.02
3564 3648 2.025898 TCAATGCGGACTACATACGGA 58.974 47.619 0.00 0.00 0.00 4.69
3565 3649 2.626266 TCAATGCGGACTACATACGGAT 59.374 45.455 0.00 0.00 40.35 4.18
3566 3650 2.724977 ATGCGGACTACATACGGATG 57.275 50.000 5.94 5.94 37.29 3.51
3568 3652 2.574450 TGCGGACTACATACGGATGTA 58.426 47.619 19.32 19.32 44.77 2.29
3569 3653 3.151554 TGCGGACTACATACGGATGTAT 58.848 45.455 20.64 11.04 45.42 2.29
3570 3654 4.325972 TGCGGACTACATACGGATGTATA 58.674 43.478 20.64 1.71 45.42 1.47
3571 3655 4.945543 TGCGGACTACATACGGATGTATAT 59.054 41.667 20.64 12.15 45.42 0.86
3572 3656 6.114767 TGCGGACTACATACGGATGTATATA 58.885 40.000 20.64 0.52 45.42 0.86
3573 3657 6.259387 TGCGGACTACATACGGATGTATATAG 59.741 42.308 20.64 13.28 45.42 1.31
3574 3658 6.481313 GCGGACTACATACGGATGTATATAGA 59.519 42.308 20.64 0.00 45.42 1.98
3575 3659 7.518052 GCGGACTACATACGGATGTATATAGAC 60.518 44.444 20.64 10.95 45.42 2.59
3576 3660 7.306457 CGGACTACATACGGATGTATATAGACG 60.306 44.444 20.64 15.48 45.42 4.18
3577 3661 7.493971 GGACTACATACGGATGTATATAGACGT 59.506 40.741 20.64 12.85 45.42 4.34
3578 3662 9.521503 GACTACATACGGATGTATATAGACGTA 57.478 37.037 20.64 9.65 45.42 3.57
3579 3663 9.875691 ACTACATACGGATGTATATAGACGTAA 57.124 33.333 20.64 0.00 45.42 3.18
3608 3692 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
3609 3693 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
3610 3694 6.995091 AGTATAGATTCACTCATTTTGCTCCC 59.005 38.462 0.00 0.00 0.00 4.30
3611 3695 4.313020 AGATTCACTCATTTTGCTCCCT 57.687 40.909 0.00 0.00 0.00 4.20
3612 3696 5.441718 AGATTCACTCATTTTGCTCCCTA 57.558 39.130 0.00 0.00 0.00 3.53
3613 3697 6.011122 AGATTCACTCATTTTGCTCCCTAT 57.989 37.500 0.00 0.00 0.00 2.57
3614 3698 5.826737 AGATTCACTCATTTTGCTCCCTATG 59.173 40.000 0.00 0.00 0.00 2.23
3615 3699 4.574674 TCACTCATTTTGCTCCCTATGT 57.425 40.909 0.00 0.00 0.00 2.29
3616 3700 5.692115 TCACTCATTTTGCTCCCTATGTA 57.308 39.130 0.00 0.00 0.00 2.29
3617 3701 5.674525 TCACTCATTTTGCTCCCTATGTAG 58.325 41.667 0.00 0.00 0.00 2.74
3618 3702 5.189736 TCACTCATTTTGCTCCCTATGTAGT 59.810 40.000 0.00 0.00 0.00 2.73
3619 3703 5.525378 CACTCATTTTGCTCCCTATGTAGTC 59.475 44.000 0.00 0.00 0.00 2.59
3620 3704 5.036117 TCATTTTGCTCCCTATGTAGTCC 57.964 43.478 0.00 0.00 0.00 3.85
3621 3705 4.473196 TCATTTTGCTCCCTATGTAGTCCA 59.527 41.667 0.00 0.00 0.00 4.02
3622 3706 5.132648 TCATTTTGCTCCCTATGTAGTCCAT 59.867 40.000 0.00 0.00 37.58 3.41
3623 3707 6.328934 TCATTTTGCTCCCTATGTAGTCCATA 59.671 38.462 0.00 0.00 34.86 2.74
3636 3720 9.953697 CTATGTAGTCCATAGTGAAAACTCTAC 57.046 37.037 0.00 0.00 45.40 2.59
3637 3721 7.770366 TGTAGTCCATAGTGAAAACTCTACA 57.230 36.000 0.00 0.00 34.82 2.74
3638 3722 7.827701 TGTAGTCCATAGTGAAAACTCTACAG 58.172 38.462 0.00 0.00 33.13 2.74
3639 3723 7.668469 TGTAGTCCATAGTGAAAACTCTACAGA 59.332 37.037 0.00 0.00 33.13 3.41
3641 3725 6.948886 AGTCCATAGTGAAAACTCTACAGAGA 59.051 38.462 13.13 0.00 44.74 3.10
3642 3726 7.030768 GTCCATAGTGAAAACTCTACAGAGAC 58.969 42.308 13.13 0.61 44.74 3.36
3643 3727 6.948886 TCCATAGTGAAAACTCTACAGAGACT 59.051 38.462 13.13 7.79 44.74 3.24
3644 3728 7.451877 TCCATAGTGAAAACTCTACAGAGACTT 59.548 37.037 13.13 5.46 44.74 3.01
3645 3729 8.740906 CCATAGTGAAAACTCTACAGAGACTTA 58.259 37.037 13.13 0.00 44.74 2.24
3661 3745 8.875168 ACAGAGACTTATATTTAGGAATGGAGG 58.125 37.037 0.00 0.00 0.00 4.30
3662 3746 8.317679 CAGAGACTTATATTTAGGAATGGAGGG 58.682 40.741 0.00 0.00 0.00 4.30
3663 3747 8.242325 AGAGACTTATATTTAGGAATGGAGGGA 58.758 37.037 0.00 0.00 0.00 4.20
3664 3748 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
3782 3869 7.044181 CAGTCCACAGTTGAGATAATACATGT 58.956 38.462 2.69 2.69 0.00 3.21
4069 4166 1.486211 ACTCCTTACCACCATCTCCG 58.514 55.000 0.00 0.00 0.00 4.63
4098 4195 1.800655 GCTGGACTCTGCTCACGTATG 60.801 57.143 0.00 0.00 35.36 2.39
4110 4207 6.373495 TCTGCTCACGTATGTTAACTCTCTTA 59.627 38.462 7.22 0.00 0.00 2.10
4207 4339 9.162764 GAGTTATATGCGTACCCATTTCATATT 57.837 33.333 0.00 0.00 33.76 1.28
4411 4543 2.650322 TGACAACCTCCCTGTTTGTTC 58.350 47.619 0.00 0.00 0.00 3.18
4449 4857 2.987413 TGCTCTTTATTGCCACAACG 57.013 45.000 0.00 0.00 0.00 4.10
4461 4869 1.925946 GCCACAACGATGCAACACTTC 60.926 52.381 0.00 0.00 0.00 3.01
4501 4909 5.874810 GGTGCAATAGTTAGACATCAACTCA 59.125 40.000 0.00 0.00 37.42 3.41
4637 5062 3.569701 TCTTCCCTTGTCTGCATTTTGTC 59.430 43.478 0.00 0.00 0.00 3.18
4672 5098 8.539674 GTGTTTTGTATTTTCATCCTTCACAAC 58.460 33.333 0.00 0.00 0.00 3.32
4700 5126 1.501582 GGTCTAGGCTCCCACTGATT 58.498 55.000 0.00 0.00 0.00 2.57
4701 5127 1.139853 GGTCTAGGCTCCCACTGATTG 59.860 57.143 0.00 0.00 0.00 2.67
4702 5128 0.833287 TCTAGGCTCCCACTGATTGC 59.167 55.000 0.00 0.00 0.00 3.56
4727 5153 9.550811 GCGGCAATTATATATAGTTTACAAACC 57.449 33.333 0.00 0.00 39.71 3.27
4883 5313 0.391793 GGAGAAACCGGAGAAGCCAG 60.392 60.000 9.46 0.00 35.94 4.85
4885 5315 1.302511 GAAACCGGAGAAGCCAGCA 60.303 57.895 9.46 0.00 35.94 4.41
4942 5372 2.481449 CGCAATTACCGCTTCCTAGACT 60.481 50.000 0.00 0.00 0.00 3.24
4944 5374 3.679083 GCAATTACCGCTTCCTAGACTGT 60.679 47.826 0.00 0.00 0.00 3.55
4949 5379 1.888436 CGCTTCCTAGACTGTGGGCA 61.888 60.000 0.00 0.00 0.00 5.36
4952 5382 2.114616 CTTCCTAGACTGTGGGCAGAT 58.885 52.381 1.30 0.00 45.28 2.90
4953 5383 1.489481 TCCTAGACTGTGGGCAGATG 58.511 55.000 1.30 0.00 45.28 2.90
4972 5402 1.072173 TGCCCATGCTCGTATGCTATT 59.928 47.619 0.00 0.00 38.71 1.73
5132 5563 5.011635 TCACTGAGTGTGTATGGTGTGTTAT 59.988 40.000 12.93 0.00 46.27 1.89
5192 5623 6.070251 TGTGATGTGTTACCCTGATCTGTAAT 60.070 38.462 0.00 0.00 30.35 1.89
5217 5649 7.667043 AGTATGATGTTTCATTGTTACGTGT 57.333 32.000 0.00 0.00 42.61 4.49
5236 5668 2.288213 TGTGCTCTCGTGGTTCAAGTAG 60.288 50.000 0.00 0.00 0.00 2.57
5244 5676 0.320374 TGGTTCAAGTAGCAGGACCG 59.680 55.000 0.00 0.00 0.00 4.79
5258 5690 2.365617 CAGGACCGGCTATGTTATGAGT 59.634 50.000 0.00 0.00 0.00 3.41
5261 5693 4.080526 AGGACCGGCTATGTTATGAGTTTT 60.081 41.667 0.00 0.00 0.00 2.43
5263 5695 5.448632 GGACCGGCTATGTTATGAGTTTTTG 60.449 44.000 0.00 0.00 0.00 2.44
5269 5701 8.559536 CGGCTATGTTATGAGTTTTTGACATAT 58.440 33.333 0.00 0.00 31.77 1.78
5292 5813 6.405278 TCAACATGTCTATACACATCCGAT 57.595 37.500 0.00 0.00 38.78 4.18
5324 5845 3.941704 AAGAGAACATCCCTCCATTCC 57.058 47.619 0.00 0.00 0.00 3.01
5326 5847 3.192944 AGAGAACATCCCTCCATTCCAA 58.807 45.455 0.00 0.00 0.00 3.53
5327 5848 3.593328 AGAGAACATCCCTCCATTCCAAA 59.407 43.478 0.00 0.00 0.00 3.28
5328 5849 4.044571 AGAGAACATCCCTCCATTCCAAAA 59.955 41.667 0.00 0.00 0.00 2.44
5329 5850 4.951603 AGAACATCCCTCCATTCCAAAAT 58.048 39.130 0.00 0.00 0.00 1.82
5331 5852 6.502138 AGAACATCCCTCCATTCCAAAATAA 58.498 36.000 0.00 0.00 0.00 1.40
5333 5854 5.842339 ACATCCCTCCATTCCAAAATAAGT 58.158 37.500 0.00 0.00 0.00 2.24
5334 5855 5.658190 ACATCCCTCCATTCCAAAATAAGTG 59.342 40.000 0.00 0.00 0.00 3.16
5336 5857 5.261216 TCCCTCCATTCCAAAATAAGTGTC 58.739 41.667 0.00 0.00 0.00 3.67
5337 5858 5.015178 TCCCTCCATTCCAAAATAAGTGTCT 59.985 40.000 0.00 0.00 0.00 3.41
5340 5861 7.396055 CCCTCCATTCCAAAATAAGTGTCTTAA 59.604 37.037 0.00 0.00 0.00 1.85
5342 5863 8.934023 TCCATTCCAAAATAAGTGTCTTAACT 57.066 30.769 0.00 0.00 0.00 2.24
5344 5865 9.981114 CCATTCCAAAATAAGTGTCTTAACTTT 57.019 29.630 0.00 0.00 40.77 2.66
5384 5905 8.429493 ACAAAGTTGTACTAAGGTTAAGACAC 57.571 34.615 0.00 0.00 40.16 3.67
5385 5906 8.262933 ACAAAGTTGTACTAAGGTTAAGACACT 58.737 33.333 0.00 0.00 40.16 3.55
5386 5907 9.106070 CAAAGTTGTACTAAGGTTAAGACACTT 57.894 33.333 0.00 0.00 0.00 3.16
5398 5919 8.543862 AGGTTAAGACACTTATTTTAAGACGG 57.456 34.615 1.47 0.00 0.00 4.79
5399 5920 8.370182 AGGTTAAGACACTTATTTTAAGACGGA 58.630 33.333 1.47 0.00 0.00 4.69
5400 5921 8.654215 GGTTAAGACACTTATTTTAAGACGGAG 58.346 37.037 1.47 0.00 0.00 4.63
5401 5922 8.654215 GTTAAGACACTTATTTTAAGACGGAGG 58.346 37.037 1.47 0.00 0.00 4.30
5402 5923 5.731591 AGACACTTATTTTAAGACGGAGGG 58.268 41.667 1.47 0.00 0.00 4.30
5403 5924 5.482878 AGACACTTATTTTAAGACGGAGGGA 59.517 40.000 1.47 0.00 0.00 4.20
5404 5925 5.731591 ACACTTATTTTAAGACGGAGGGAG 58.268 41.667 1.47 0.00 0.00 4.30
5405 5926 5.247792 ACACTTATTTTAAGACGGAGGGAGT 59.752 40.000 1.47 0.00 0.00 3.85
5406 5927 6.438425 ACACTTATTTTAAGACGGAGGGAGTA 59.562 38.462 1.47 0.00 0.00 2.59
5407 5928 7.125356 ACACTTATTTTAAGACGGAGGGAGTAT 59.875 37.037 1.47 0.00 0.00 2.12
5408 5929 8.636213 CACTTATTTTAAGACGGAGGGAGTATA 58.364 37.037 1.47 0.00 0.00 1.47
5409 5930 9.377238 ACTTATTTTAAGACGGAGGGAGTATAT 57.623 33.333 1.47 0.00 0.00 0.86
5412 5933 8.953223 ATTTTAAGACGGAGGGAGTATATACT 57.047 34.615 15.37 15.37 39.71 2.12
5414 5935 8.854614 TTTAAGACGGAGGGAGTATATACTAC 57.145 38.462 15.84 15.84 36.50 2.73
5415 5936 6.700845 AAGACGGAGGGAGTATATACTACT 57.299 41.667 21.91 18.60 37.32 2.57
5416 5937 6.298441 AGACGGAGGGAGTATATACTACTC 57.702 45.833 25.15 25.15 42.28 2.59
5425 5946 5.427378 GAGTATATACTACTCCCTCCGTCC 58.573 50.000 15.42 0.00 38.33 4.79
5426 5947 4.848660 AGTATATACTACTCCCTCCGTCCA 59.151 45.833 13.88 0.00 34.13 4.02
5427 5948 2.660670 ATACTACTCCCTCCGTCCAG 57.339 55.000 0.00 0.00 0.00 3.86
5428 5949 1.588239 TACTACTCCCTCCGTCCAGA 58.412 55.000 0.00 0.00 0.00 3.86
5429 5950 0.702902 ACTACTCCCTCCGTCCAGAA 59.297 55.000 0.00 0.00 0.00 3.02
5430 5951 1.076677 ACTACTCCCTCCGTCCAGAAA 59.923 52.381 0.00 0.00 0.00 2.52
5431 5952 2.292323 ACTACTCCCTCCGTCCAGAAAT 60.292 50.000 0.00 0.00 0.00 2.17
5432 5953 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
5433 5954 3.047695 ACTCCCTCCGTCCAGAAATAT 57.952 47.619 0.00 0.00 0.00 1.28
5434 5955 3.385115 ACTCCCTCCGTCCAGAAATATT 58.615 45.455 0.00 0.00 0.00 1.28
5435 5956 3.780850 ACTCCCTCCGTCCAGAAATATTT 59.219 43.478 0.00 0.00 0.00 1.40
5436 5957 4.130118 CTCCCTCCGTCCAGAAATATTTG 58.870 47.826 5.17 0.00 0.00 2.32
5437 5958 3.521937 TCCCTCCGTCCAGAAATATTTGT 59.478 43.478 5.17 0.00 0.00 2.83
5438 5959 3.877508 CCCTCCGTCCAGAAATATTTGTC 59.122 47.826 5.17 0.00 0.00 3.18
5439 5960 4.513442 CCTCCGTCCAGAAATATTTGTCA 58.487 43.478 5.17 0.00 0.00 3.58
5440 5961 5.126067 CCTCCGTCCAGAAATATTTGTCAT 58.874 41.667 5.17 0.00 0.00 3.06
5441 5962 5.237344 CCTCCGTCCAGAAATATTTGTCATC 59.763 44.000 5.17 0.00 0.00 2.92
5442 5963 5.739959 TCCGTCCAGAAATATTTGTCATCA 58.260 37.500 5.17 0.00 0.00 3.07
5443 5964 6.176896 TCCGTCCAGAAATATTTGTCATCAA 58.823 36.000 5.17 0.00 0.00 2.57
5444 5965 6.657117 TCCGTCCAGAAATATTTGTCATCAAA 59.343 34.615 5.17 0.00 45.71 2.69
5445 5966 7.175816 TCCGTCCAGAAATATTTGTCATCAAAA 59.824 33.333 5.17 0.00 44.97 2.44
5446 5967 7.975616 CCGTCCAGAAATATTTGTCATCAAAAT 59.024 33.333 5.17 0.00 44.97 1.82
5530 6051 8.676454 TTTTAATGACAAATATTTTCGGACGG 57.324 30.769 0.00 0.00 0.00 4.79
5531 6052 7.612668 TTAATGACAAATATTTTCGGACGGA 57.387 32.000 0.00 0.00 0.00 4.69
5532 6053 5.734855 ATGACAAATATTTTCGGACGGAG 57.265 39.130 0.00 0.00 0.00 4.63
5533 6054 3.936453 TGACAAATATTTTCGGACGGAGG 59.064 43.478 0.00 0.00 0.00 4.30
5534 6055 3.275999 ACAAATATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
5535 6056 3.054948 ACAAATATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
5536 6057 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
5537 6058 1.856629 TATTTTCGGACGGAGGGAGT 58.143 50.000 0.00 0.00 0.00 3.85
5538 6059 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
5539 6060 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
5540 6061 2.734755 TTTCGGACGGAGGGAGTATA 57.265 50.000 0.00 0.00 0.00 1.47
5541 6062 2.965671 TTCGGACGGAGGGAGTATAT 57.034 50.000 0.00 0.00 0.00 0.86
5542 6063 4.371624 TTTCGGACGGAGGGAGTATATA 57.628 45.455 0.00 0.00 0.00 0.86
5543 6064 4.371624 TTCGGACGGAGGGAGTATATAA 57.628 45.455 0.00 0.00 0.00 0.98
5544 6065 3.947868 TCGGACGGAGGGAGTATATAAG 58.052 50.000 0.00 0.00 0.00 1.73
5550 6071 7.574592 CGGACGGAGGGAGTATATAAGTAAAAG 60.575 44.444 0.00 0.00 0.00 2.27
5588 6109 3.472652 TCGTGGCAATGAACTAAACACT 58.527 40.909 0.00 0.00 0.00 3.55
5624 6145 9.474249 GAAAATAACTAAAGTTAGACGATGTGC 57.526 33.333 8.43 0.00 42.94 4.57
5633 7894 2.386661 AGACGATGTGCCAACCTTAG 57.613 50.000 0.00 0.00 0.00 2.18
5658 7919 1.066929 CAAACCAAGCATGCCCTTACC 60.067 52.381 15.66 0.00 0.00 2.85
5660 7921 2.120909 CCAAGCATGCCCTTACCCG 61.121 63.158 15.66 0.00 0.00 5.28
5674 7935 2.733319 TACCCGTGTTGATTGCGCCA 62.733 55.000 4.18 0.00 0.00 5.69
5683 7944 3.179048 GTTGATTGCGCCAATAAGGAAC 58.821 45.455 4.18 3.45 41.22 3.62
5692 7953 2.351726 GCCAATAAGGAACAGCTACACG 59.648 50.000 0.00 0.00 41.22 4.49
5695 7956 0.970640 TAAGGAACAGCTACACGGCA 59.029 50.000 0.00 0.00 34.17 5.69
5696 7957 0.324943 AAGGAACAGCTACACGGCAT 59.675 50.000 0.00 0.00 34.17 4.40
5706 7967 3.119849 AGCTACACGGCATCATTTTCAAC 60.120 43.478 0.00 0.00 34.17 3.18
5760 8023 9.013229 GCCATTATCAATTTATCTGGTCACATA 57.987 33.333 4.11 0.00 0.00 2.29
5767 8030 9.429109 TCAATTTATCTGGTCACATACTACCTA 57.571 33.333 0.00 0.00 36.67 3.08
5771 8034 5.909621 TCTGGTCACATACTACCTAACAC 57.090 43.478 0.00 0.00 36.67 3.32
5795 8066 6.379988 ACTGGTTCTTGTTTTAGGTTGTGAAT 59.620 34.615 0.00 0.00 0.00 2.57
5798 8069 8.192110 TGGTTCTTGTTTTAGGTTGTGAATTAC 58.808 33.333 0.00 0.00 0.00 1.89
5800 8071 9.575783 GTTCTTGTTTTAGGTTGTGAATTACAA 57.424 29.630 0.00 0.00 46.62 2.41
5888 8159 7.686438 ATCAATGTTACACTACAAATCAGCA 57.314 32.000 0.00 0.00 0.00 4.41
5889 8160 6.898041 TCAATGTTACACTACAAATCAGCAC 58.102 36.000 0.00 0.00 0.00 4.40
5890 8161 5.880054 ATGTTACACTACAAATCAGCACC 57.120 39.130 0.00 0.00 0.00 5.01
5891 8162 4.709250 TGTTACACTACAAATCAGCACCA 58.291 39.130 0.00 0.00 0.00 4.17
5892 8163 5.312895 TGTTACACTACAAATCAGCACCAT 58.687 37.500 0.00 0.00 0.00 3.55
5893 8164 5.767665 TGTTACACTACAAATCAGCACCATT 59.232 36.000 0.00 0.00 0.00 3.16
5894 8165 6.937465 TGTTACACTACAAATCAGCACCATTA 59.063 34.615 0.00 0.00 0.00 1.90
5895 8166 7.119116 TGTTACACTACAAATCAGCACCATTAG 59.881 37.037 0.00 0.00 0.00 1.73
5896 8167 5.804639 ACACTACAAATCAGCACCATTAGA 58.195 37.500 0.00 0.00 0.00 2.10
5897 8168 6.237901 ACACTACAAATCAGCACCATTAGAA 58.762 36.000 0.00 0.00 0.00 2.10
5898 8169 6.886459 ACACTACAAATCAGCACCATTAGAAT 59.114 34.615 0.00 0.00 0.00 2.40
5899 8170 7.066284 ACACTACAAATCAGCACCATTAGAATC 59.934 37.037 0.00 0.00 0.00 2.52
5900 8171 7.066163 CACTACAAATCAGCACCATTAGAATCA 59.934 37.037 0.00 0.00 0.00 2.57
5901 8172 7.776969 ACTACAAATCAGCACCATTAGAATCAT 59.223 33.333 0.00 0.00 0.00 2.45
5902 8173 7.035840 ACAAATCAGCACCATTAGAATCATC 57.964 36.000 0.00 0.00 0.00 2.92
5903 8174 5.936686 AATCAGCACCATTAGAATCATCG 57.063 39.130 0.00 0.00 0.00 3.84
5904 8175 4.406648 TCAGCACCATTAGAATCATCGT 57.593 40.909 0.00 0.00 0.00 3.73
5905 8176 4.122046 TCAGCACCATTAGAATCATCGTG 58.878 43.478 0.00 0.00 0.00 4.35
5906 8177 4.122046 CAGCACCATTAGAATCATCGTGA 58.878 43.478 0.00 0.00 0.00 4.35
5907 8178 4.571984 CAGCACCATTAGAATCATCGTGAA 59.428 41.667 0.00 0.00 0.00 3.18
5908 8179 5.065090 CAGCACCATTAGAATCATCGTGAAA 59.935 40.000 0.00 0.00 0.00 2.69
5909 8180 5.824624 AGCACCATTAGAATCATCGTGAAAT 59.175 36.000 0.00 0.00 0.00 2.17
5910 8181 6.992123 AGCACCATTAGAATCATCGTGAAATA 59.008 34.615 0.00 0.00 0.00 1.40
5911 8182 7.663081 AGCACCATTAGAATCATCGTGAAATAT 59.337 33.333 0.00 0.00 0.00 1.28
5912 8183 8.935844 GCACCATTAGAATCATCGTGAAATATA 58.064 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.668535 GAACCACTGGCACAAAGGAC 59.331 55.000 0.00 0.00 38.70 3.85
38 39 1.450312 GGGCAGATCGAACCACTGG 60.450 63.158 11.88 0.00 33.00 4.00
39 40 1.811266 CGGGCAGATCGAACCACTG 60.811 63.158 0.00 0.00 35.14 3.66
105 106 3.063510 TCATCAAGCAAACCAGAGAGG 57.936 47.619 0.00 0.00 45.67 3.69
192 193 9.661563 AGAATCTTTGAATGTAACCGTGTATTA 57.338 29.630 0.00 0.00 0.00 0.98
231 232 9.230932 GAATCGAAGAAATCCAGAATCATTTTC 57.769 33.333 0.00 0.00 43.58 2.29
243 244 5.578727 CGATAGGATGGAATCGAAGAAATCC 59.421 44.000 10.87 10.87 46.86 3.01
462 477 7.816640 TGATGAAGCTGTAGTAAAAATCCAAC 58.183 34.615 0.00 0.00 0.00 3.77
510 526 3.697045 TGGGTGTAAGTCTTGTTTTGTGG 59.303 43.478 0.00 0.00 0.00 4.17
526 542 0.548031 ATGCGATCTGGATTGGGTGT 59.452 50.000 0.00 0.00 0.00 4.16
531 547 3.881795 GCACTAAATGCGATCTGGATTG 58.118 45.455 5.40 0.00 46.55 2.67
570 586 0.108424 GACACCAGCTCTGCACCTAG 60.108 60.000 0.00 0.00 0.00 3.02
633 649 8.680903 TCCACTCCTCTAGTACTTAATTAAACG 58.319 37.037 0.00 0.00 35.76 3.60
731 747 2.359900 CCCTGTACTCATGCTTTCACC 58.640 52.381 0.00 0.00 0.00 4.02
828 844 5.370679 AGGAACAAACGCTAAGGTTCTAAA 58.629 37.500 0.00 0.00 39.55 1.85
833 849 3.487120 AGAGGAACAAACGCTAAGGTT 57.513 42.857 0.00 0.00 0.00 3.50
842 858 3.128068 ACAACCACGAAAGAGGAACAAAC 59.872 43.478 0.00 0.00 45.46 2.93
1143 1170 2.508928 CACCCGGACACCACAGTT 59.491 61.111 0.73 0.00 0.00 3.16
1205 1232 5.709631 TCCTAGAAATGCAATAACACAGCAA 59.290 36.000 0.00 0.00 42.15 3.91
1231 1258 7.880160 AATTAGCATGCCTCTACATTTACAA 57.120 32.000 15.66 0.00 0.00 2.41
1256 1283 6.489700 TGGTTTTCAATATCAGAAGAGCACAA 59.510 34.615 8.34 0.00 34.17 3.33
1258 1285 6.500684 TGGTTTTCAATATCAGAAGAGCAC 57.499 37.500 8.34 0.00 34.17 4.40
1507 1534 4.756084 ACAATCTTACAGTTTCTGCTGC 57.244 40.909 0.00 0.00 39.96 5.25
1525 1552 3.360867 TCCAGTTCCTTGAAGCAAACAA 58.639 40.909 10.09 0.00 0.00 2.83
1629 1656 6.261381 AGCGTTTGTTATTTTCTACCAGTGAA 59.739 34.615 0.00 0.00 0.00 3.18
1721 1756 3.366052 AAGTGAAACGAATATGGGGCT 57.634 42.857 0.00 0.00 45.86 5.19
1798 1834 6.764308 ATAGGGACACAAATGTTGATCTTG 57.236 37.500 0.00 0.00 39.95 3.02
1936 1975 5.119588 GCACGTACTAGAAACAGCATAACAA 59.880 40.000 0.00 0.00 0.00 2.83
1939 1978 4.811908 TGCACGTACTAGAAACAGCATAA 58.188 39.130 0.00 0.00 0.00 1.90
1941 1980 3.313012 TGCACGTACTAGAAACAGCAT 57.687 42.857 0.00 0.00 0.00 3.79
1942 1981 2.804697 TGCACGTACTAGAAACAGCA 57.195 45.000 0.00 5.05 0.00 4.41
1943 1982 3.432252 ACAATGCACGTACTAGAAACAGC 59.568 43.478 0.00 2.51 0.00 4.40
1955 2006 5.415701 AGGAATTTTCATAGACAATGCACGT 59.584 36.000 0.00 0.00 35.38 4.49
2137 2201 4.434725 CGTACATGCACACAATCAGAAGAC 60.435 45.833 0.00 0.00 0.00 3.01
2144 2208 2.225491 ACCAACGTACATGCACACAATC 59.775 45.455 0.00 0.00 0.00 2.67
2173 2237 6.087687 CACGTTATACATTACTATGTCCAGCG 59.912 42.308 0.00 0.00 43.81 5.18
2526 2594 3.181469 ACCTGCGTGAGAGTAAAGTGAAA 60.181 43.478 0.00 0.00 0.00 2.69
2603 2672 6.403092 CGCATATGTCTATAGTCTCCACTGAG 60.403 46.154 4.29 0.00 40.17 3.35
2722 2791 5.545658 TCTTTACAAACCTGCATCGATTC 57.454 39.130 0.00 0.00 0.00 2.52
2819 2888 3.754323 CGGAATACCACCAGCTTAACAAA 59.246 43.478 0.00 0.00 35.59 2.83
3031 3110 2.242043 AGCAAGAACTCACCAATTGGG 58.758 47.619 27.89 16.62 44.81 4.12
3162 3241 1.084289 GGCCCTGTAAATGTGACGTC 58.916 55.000 9.11 9.11 0.00 4.34
3488 3567 5.044558 GGAAGTAAGTATTTGAGAGCGGAG 58.955 45.833 0.00 0.00 0.00 4.63
3491 3570 5.044558 GGAGGAAGTAAGTATTTGAGAGCG 58.955 45.833 0.00 0.00 0.00 5.03
3505 3589 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
3506 3590 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
3507 3591 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
3508 3592 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
3509 3593 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
3510 3594 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3511 3595 9.595823 TGAAAAGACTTATATTTAGGAACGGAG 57.404 33.333 0.00 0.00 0.00 4.63
3512 3596 9.595823 CTGAAAAGACTTATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3513 3597 9.595823 TCTGAAAAGACTTATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3525 3609 8.180267 CGCATTGAAATCTCTGAAAAGACTTAT 58.820 33.333 0.00 0.00 0.00 1.73
3526 3610 7.361201 CCGCATTGAAATCTCTGAAAAGACTTA 60.361 37.037 0.00 0.00 0.00 2.24
3527 3611 6.376978 CGCATTGAAATCTCTGAAAAGACTT 58.623 36.000 0.00 0.00 0.00 3.01
3528 3612 5.106396 CCGCATTGAAATCTCTGAAAAGACT 60.106 40.000 0.00 0.00 0.00 3.24
3529 3613 5.091431 CCGCATTGAAATCTCTGAAAAGAC 58.909 41.667 0.00 0.00 0.00 3.01
3530 3614 5.003160 TCCGCATTGAAATCTCTGAAAAGA 58.997 37.500 0.00 0.00 0.00 2.52
3531 3615 5.091431 GTCCGCATTGAAATCTCTGAAAAG 58.909 41.667 0.00 0.00 0.00 2.27
3532 3616 4.761739 AGTCCGCATTGAAATCTCTGAAAA 59.238 37.500 0.00 0.00 0.00 2.29
3533 3617 4.326826 AGTCCGCATTGAAATCTCTGAAA 58.673 39.130 0.00 0.00 0.00 2.69
3534 3618 3.942829 AGTCCGCATTGAAATCTCTGAA 58.057 40.909 0.00 0.00 0.00 3.02
3535 3619 3.616956 AGTCCGCATTGAAATCTCTGA 57.383 42.857 0.00 0.00 0.00 3.27
3536 3620 4.183865 TGTAGTCCGCATTGAAATCTCTG 58.816 43.478 0.00 0.00 0.00 3.35
3537 3621 4.471904 TGTAGTCCGCATTGAAATCTCT 57.528 40.909 0.00 0.00 0.00 3.10
3538 3622 5.107837 CGTATGTAGTCCGCATTGAAATCTC 60.108 44.000 0.00 0.00 0.00 2.75
3539 3623 4.745125 CGTATGTAGTCCGCATTGAAATCT 59.255 41.667 0.00 0.00 0.00 2.40
3540 3624 4.084537 CCGTATGTAGTCCGCATTGAAATC 60.085 45.833 0.00 0.00 0.00 2.17
3541 3625 3.807622 CCGTATGTAGTCCGCATTGAAAT 59.192 43.478 0.00 0.00 0.00 2.17
3542 3626 3.119065 TCCGTATGTAGTCCGCATTGAAA 60.119 43.478 0.00 0.00 0.00 2.69
3543 3627 2.427812 TCCGTATGTAGTCCGCATTGAA 59.572 45.455 0.00 0.00 0.00 2.69
3544 3628 2.025898 TCCGTATGTAGTCCGCATTGA 58.974 47.619 0.00 0.00 0.00 2.57
3545 3629 2.502213 TCCGTATGTAGTCCGCATTG 57.498 50.000 0.00 0.00 0.00 2.82
3546 3630 2.364324 ACATCCGTATGTAGTCCGCATT 59.636 45.455 0.00 0.00 44.66 3.56
3547 3631 1.961394 ACATCCGTATGTAGTCCGCAT 59.039 47.619 0.00 0.00 44.66 4.73
3548 3632 1.395635 ACATCCGTATGTAGTCCGCA 58.604 50.000 0.00 0.00 44.66 5.69
3582 3666 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
3583 3667 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
3584 3668 7.172361 GGGAGCAAAATGAGTGAATCTATACTC 59.828 40.741 0.00 0.00 42.77 2.59
3585 3669 6.995091 GGGAGCAAAATGAGTGAATCTATACT 59.005 38.462 0.00 0.00 0.00 2.12
3586 3670 6.995091 AGGGAGCAAAATGAGTGAATCTATAC 59.005 38.462 0.00 0.00 0.00 1.47
3587 3671 7.141758 AGGGAGCAAAATGAGTGAATCTATA 57.858 36.000 0.00 0.00 0.00 1.31
3588 3672 6.011122 AGGGAGCAAAATGAGTGAATCTAT 57.989 37.500 0.00 0.00 0.00 1.98
3589 3673 5.441718 AGGGAGCAAAATGAGTGAATCTA 57.558 39.130 0.00 0.00 0.00 1.98
3590 3674 4.313020 AGGGAGCAAAATGAGTGAATCT 57.687 40.909 0.00 0.00 0.00 2.40
3591 3675 5.591877 ACATAGGGAGCAAAATGAGTGAATC 59.408 40.000 0.00 0.00 0.00 2.52
3592 3676 5.513233 ACATAGGGAGCAAAATGAGTGAAT 58.487 37.500 0.00 0.00 0.00 2.57
3593 3677 4.922206 ACATAGGGAGCAAAATGAGTGAA 58.078 39.130 0.00 0.00 0.00 3.18
3594 3678 4.574674 ACATAGGGAGCAAAATGAGTGA 57.425 40.909 0.00 0.00 0.00 3.41
3595 3679 5.431765 ACTACATAGGGAGCAAAATGAGTG 58.568 41.667 0.00 0.00 0.00 3.51
3596 3680 5.396884 GGACTACATAGGGAGCAAAATGAGT 60.397 44.000 0.00 0.00 0.00 3.41
3597 3681 5.059833 GGACTACATAGGGAGCAAAATGAG 58.940 45.833 0.00 0.00 0.00 2.90
3598 3682 4.473196 TGGACTACATAGGGAGCAAAATGA 59.527 41.667 0.00 0.00 0.00 2.57
3599 3683 4.780815 TGGACTACATAGGGAGCAAAATG 58.219 43.478 0.00 0.00 0.00 2.32
3600 3684 5.653255 ATGGACTACATAGGGAGCAAAAT 57.347 39.130 0.00 0.00 38.26 1.82
3611 3695 9.470399 TGTAGAGTTTTCACTATGGACTACATA 57.530 33.333 0.00 0.00 41.03 2.29
3612 3696 8.362464 TGTAGAGTTTTCACTATGGACTACAT 57.638 34.615 0.00 0.00 43.68 2.29
3613 3697 7.668469 TCTGTAGAGTTTTCACTATGGACTACA 59.332 37.037 0.00 0.00 34.94 2.74
3614 3698 8.053026 TCTGTAGAGTTTTCACTATGGACTAC 57.947 38.462 0.00 0.00 31.22 2.73
3615 3699 8.107729 TCTCTGTAGAGTTTTCACTATGGACTA 58.892 37.037 8.63 0.00 42.60 2.59
3616 3700 6.948886 TCTCTGTAGAGTTTTCACTATGGACT 59.051 38.462 8.63 0.00 42.60 3.85
3617 3701 7.030768 GTCTCTGTAGAGTTTTCACTATGGAC 58.969 42.308 8.63 0.00 42.60 4.02
3618 3702 6.948886 AGTCTCTGTAGAGTTTTCACTATGGA 59.051 38.462 8.63 0.00 42.60 3.41
3619 3703 7.164230 AGTCTCTGTAGAGTTTTCACTATGG 57.836 40.000 8.63 0.00 42.60 2.74
3635 3719 8.875168 CCTCCATTCCTAAATATAAGTCTCTGT 58.125 37.037 0.00 0.00 0.00 3.41
3636 3720 8.317679 CCCTCCATTCCTAAATATAAGTCTCTG 58.682 40.741 0.00 0.00 0.00 3.35
3637 3721 8.242325 TCCCTCCATTCCTAAATATAAGTCTCT 58.758 37.037 0.00 0.00 0.00 3.10
3638 3722 8.437274 TCCCTCCATTCCTAAATATAAGTCTC 57.563 38.462 0.00 0.00 0.00 3.36
3639 3723 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
3640 3724 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
3641 3725 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
3642 3726 9.548631 TCTACTCCCTCCATTCCTAAATATAAG 57.451 37.037 0.00 0.00 0.00 1.73
3643 3727 9.907819 TTCTACTCCCTCCATTCCTAAATATAA 57.092 33.333 0.00 0.00 0.00 0.98
3644 3728 9.907819 TTTCTACTCCCTCCATTCCTAAATATA 57.092 33.333 0.00 0.00 0.00 0.86
3645 3729 8.661345 GTTTCTACTCCCTCCATTCCTAAATAT 58.339 37.037 0.00 0.00 0.00 1.28
3646 3730 7.849904 AGTTTCTACTCCCTCCATTCCTAAATA 59.150 37.037 0.00 0.00 0.00 1.40
3647 3731 6.678857 AGTTTCTACTCCCTCCATTCCTAAAT 59.321 38.462 0.00 0.00 0.00 1.40
3648 3732 6.030082 AGTTTCTACTCCCTCCATTCCTAAA 58.970 40.000 0.00 0.00 0.00 1.85
3649 3733 5.600749 AGTTTCTACTCCCTCCATTCCTAA 58.399 41.667 0.00 0.00 0.00 2.69
3650 3734 5.222278 AGTTTCTACTCCCTCCATTCCTA 57.778 43.478 0.00 0.00 0.00 2.94
3651 3735 4.081695 AGTTTCTACTCCCTCCATTCCT 57.918 45.455 0.00 0.00 0.00 3.36
3652 3736 4.202274 GCTAGTTTCTACTCCCTCCATTCC 60.202 50.000 0.00 0.00 35.78 3.01
3653 3737 4.500035 CGCTAGTTTCTACTCCCTCCATTC 60.500 50.000 0.00 0.00 35.78 2.67
3654 3738 3.385111 CGCTAGTTTCTACTCCCTCCATT 59.615 47.826 0.00 0.00 35.78 3.16
3655 3739 2.959707 CGCTAGTTTCTACTCCCTCCAT 59.040 50.000 0.00 0.00 35.78 3.41
3656 3740 2.291411 ACGCTAGTTTCTACTCCCTCCA 60.291 50.000 0.00 0.00 35.78 3.86
3657 3741 2.377073 ACGCTAGTTTCTACTCCCTCC 58.623 52.381 0.00 0.00 35.78 4.30
3658 3742 5.771153 AATACGCTAGTTTCTACTCCCTC 57.229 43.478 0.00 0.00 35.78 4.30
3659 3743 5.163437 CCAAATACGCTAGTTTCTACTCCCT 60.163 44.000 0.00 0.00 35.78 4.20
3660 3744 5.048507 CCAAATACGCTAGTTTCTACTCCC 58.951 45.833 0.00 0.00 35.78 4.30
3661 3745 5.048507 CCCAAATACGCTAGTTTCTACTCC 58.951 45.833 0.00 0.00 35.78 3.85
3662 3746 5.899299 TCCCAAATACGCTAGTTTCTACTC 58.101 41.667 0.00 0.00 35.78 2.59
3663 3747 5.927281 TCCCAAATACGCTAGTTTCTACT 57.073 39.130 0.00 0.00 38.44 2.57
3664 3748 7.707893 TGTATTCCCAAATACGCTAGTTTCTAC 59.292 37.037 0.00 0.00 46.87 2.59
3817 3904 6.877855 ACTTGGCAGCAACAGATATATAGATG 59.122 38.462 0.00 0.00 0.00 2.90
3818 3905 7.013823 ACTTGGCAGCAACAGATATATAGAT 57.986 36.000 0.00 0.00 0.00 1.98
3959 4049 7.087639 GGCACATGAAGACTAGTAGCTTATAG 58.912 42.308 0.00 0.00 0.00 1.31
4110 4207 6.741240 GCACCACCAAATGTTAGGAAAGAAAT 60.741 38.462 0.00 0.00 0.00 2.17
4672 5098 1.002274 AGCCTAGACCCTCCCTGTG 59.998 63.158 0.00 0.00 0.00 3.66
4701 5127 9.550811 GGTTTGTAAACTATATATAATTGCCGC 57.449 33.333 7.36 0.00 38.89 6.53
4883 5313 2.294233 TCATCTTCACTGGTTTTGCTGC 59.706 45.455 0.00 0.00 0.00 5.25
4885 5315 3.571401 CCTTCATCTTCACTGGTTTTGCT 59.429 43.478 0.00 0.00 0.00 3.91
4949 5379 0.604780 GCATACGAGCATGGGCATCT 60.605 55.000 0.00 0.00 44.61 2.90
4952 5382 0.686789 ATAGCATACGAGCATGGGCA 59.313 50.000 0.00 0.00 44.61 5.36
4953 5383 1.734465 GAATAGCATACGAGCATGGGC 59.266 52.381 0.00 0.00 41.61 5.36
4956 5386 5.063186 GGAAGATGAATAGCATACGAGCATG 59.937 44.000 0.00 0.00 37.34 4.06
4957 5387 5.174395 GGAAGATGAATAGCATACGAGCAT 58.826 41.667 0.00 0.00 37.34 3.79
4958 5388 4.560128 GGAAGATGAATAGCATACGAGCA 58.440 43.478 0.00 0.00 37.34 4.26
4959 5389 3.929610 GGGAAGATGAATAGCATACGAGC 59.070 47.826 0.00 0.00 37.34 5.03
4960 5390 4.499183 GGGGAAGATGAATAGCATACGAG 58.501 47.826 0.00 0.00 37.34 4.18
4961 5391 3.056821 CGGGGAAGATGAATAGCATACGA 60.057 47.826 0.00 0.00 37.34 3.43
4962 5392 3.056821 TCGGGGAAGATGAATAGCATACG 60.057 47.826 0.00 0.00 37.34 3.06
4972 5402 1.035932 GGTCTCGTCGGGGAAGATGA 61.036 60.000 0.00 0.00 35.17 2.92
5004 5435 2.514592 AGGCATGGAACGCGGATG 60.515 61.111 12.47 8.16 0.00 3.51
5009 5440 1.244019 AAAGGACAGGCATGGAACGC 61.244 55.000 2.31 0.00 0.00 4.84
5132 5563 4.811969 TCGCTCCTTTATTCACCAACTA 57.188 40.909 0.00 0.00 0.00 2.24
5192 5623 8.652463 CACACGTAACAATGAAACATCATACTA 58.348 33.333 0.00 0.00 0.00 1.82
5217 5649 1.336887 GCTACTTGAACCACGAGAGCA 60.337 52.381 0.00 0.00 35.38 4.26
5236 5668 1.070134 TCATAACATAGCCGGTCCTGC 59.930 52.381 1.90 0.00 0.00 4.85
5244 5676 9.884465 GATATGTCAAAAACTCATAACATAGCC 57.116 33.333 0.00 0.00 34.25 3.93
5269 5701 5.845391 TCGGATGTGTATAGACATGTTGA 57.155 39.130 19.40 11.14 36.67 3.18
5272 5704 6.405278 TCAATCGGATGTGTATAGACATGT 57.595 37.500 19.40 0.00 36.67 3.21
5274 5706 9.996554 TTTTATCAATCGGATGTGTATAGACAT 57.003 29.630 14.92 14.92 39.34 3.06
5302 5823 4.044571 TGGAATGGAGGGATGTTCTCTTTT 59.955 41.667 0.00 0.00 0.00 2.27
5303 5824 3.593328 TGGAATGGAGGGATGTTCTCTTT 59.407 43.478 0.00 0.00 0.00 2.52
5305 5826 2.850833 TGGAATGGAGGGATGTTCTCT 58.149 47.619 0.00 0.00 0.00 3.10
5306 5827 3.652057 TTGGAATGGAGGGATGTTCTC 57.348 47.619 0.00 0.00 0.00 2.87
5308 5829 6.381133 ACTTATTTTGGAATGGAGGGATGTTC 59.619 38.462 0.00 0.00 0.00 3.18
5310 5831 5.658190 CACTTATTTTGGAATGGAGGGATGT 59.342 40.000 0.00 0.00 0.00 3.06
5312 5833 5.842339 ACACTTATTTTGGAATGGAGGGAT 58.158 37.500 0.00 0.00 0.00 3.85
5314 5835 5.264395 AGACACTTATTTTGGAATGGAGGG 58.736 41.667 0.00 0.00 0.00 4.30
5315 5836 6.840780 AAGACACTTATTTTGGAATGGAGG 57.159 37.500 0.00 0.00 0.00 4.30
5316 5837 9.014297 AGTTAAGACACTTATTTTGGAATGGAG 57.986 33.333 0.00 0.00 0.00 3.86
5317 5838 8.934023 AGTTAAGACACTTATTTTGGAATGGA 57.066 30.769 0.00 0.00 0.00 3.41
5318 5839 9.981114 AAAGTTAAGACACTTATTTTGGAATGG 57.019 29.630 0.00 0.00 35.87 3.16
5360 5881 8.658499 AGTGTCTTAACCTTAGTACAACTTTG 57.342 34.615 0.00 0.00 0.00 2.77
5373 5894 8.370182 TCCGTCTTAAAATAAGTGTCTTAACCT 58.630 33.333 0.00 0.00 0.00 3.50
5374 5895 8.538409 TCCGTCTTAAAATAAGTGTCTTAACC 57.462 34.615 0.00 0.00 0.00 2.85
5376 5897 7.820872 CCCTCCGTCTTAAAATAAGTGTCTTAA 59.179 37.037 0.00 0.00 0.00 1.85
5377 5898 7.178983 TCCCTCCGTCTTAAAATAAGTGTCTTA 59.821 37.037 0.00 0.00 0.00 2.10
5378 5899 6.013984 TCCCTCCGTCTTAAAATAAGTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
5380 5901 5.727434 TCCCTCCGTCTTAAAATAAGTGTC 58.273 41.667 0.00 0.00 0.00 3.67
5382 5903 5.731591 ACTCCCTCCGTCTTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
5387 5908 8.953223 AGTATATACTCCCTCCGTCTTAAAAT 57.047 34.615 9.71 0.00 0.00 1.82
5388 5909 9.289782 GTAGTATATACTCCCTCCGTCTTAAAA 57.710 37.037 18.68 0.00 37.73 1.52
5389 5910 8.664079 AGTAGTATATACTCCCTCCGTCTTAAA 58.336 37.037 18.68 0.00 37.73 1.52
5390 5911 8.212259 AGTAGTATATACTCCCTCCGTCTTAA 57.788 38.462 18.68 0.00 37.73 1.85
5391 5912 7.805083 AGTAGTATATACTCCCTCCGTCTTA 57.195 40.000 18.68 0.00 37.73 2.10
5392 5913 6.700845 AGTAGTATATACTCCCTCCGTCTT 57.299 41.667 18.68 0.00 37.73 3.01
5393 5914 6.298441 GAGTAGTATATACTCCCTCCGTCT 57.702 45.833 18.68 6.19 38.33 4.18
5402 5923 5.046014 TGGACGGAGGGAGTAGTATATACTC 60.046 48.000 18.68 7.10 42.28 2.59
5403 5924 4.848660 TGGACGGAGGGAGTAGTATATACT 59.151 45.833 19.07 19.07 40.24 2.12
5404 5925 5.046014 TCTGGACGGAGGGAGTAGTATATAC 60.046 48.000 4.60 4.60 0.00 1.47
5405 5926 5.096521 TCTGGACGGAGGGAGTAGTATATA 58.903 45.833 0.00 0.00 0.00 0.86
5406 5927 3.915073 TCTGGACGGAGGGAGTAGTATAT 59.085 47.826 0.00 0.00 0.00 0.86
5407 5928 3.321039 TCTGGACGGAGGGAGTAGTATA 58.679 50.000 0.00 0.00 0.00 1.47
5408 5929 2.133520 TCTGGACGGAGGGAGTAGTAT 58.866 52.381 0.00 0.00 0.00 2.12
5409 5930 1.588239 TCTGGACGGAGGGAGTAGTA 58.412 55.000 0.00 0.00 0.00 1.82
5410 5931 0.702902 TTCTGGACGGAGGGAGTAGT 59.297 55.000 0.00 0.00 0.00 2.73
5411 5932 1.848652 TTTCTGGACGGAGGGAGTAG 58.151 55.000 0.00 0.00 0.00 2.57
5412 5933 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
5413 5934 2.544844 TATTTCTGGACGGAGGGAGT 57.455 50.000 0.00 0.00 0.00 3.85
5414 5935 4.130118 CAAATATTTCTGGACGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
5415 5936 3.521937 ACAAATATTTCTGGACGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
5416 5937 3.877508 GACAAATATTTCTGGACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5417 5938 4.513442 TGACAAATATTTCTGGACGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
5418 5939 5.817296 TGATGACAAATATTTCTGGACGGAG 59.183 40.000 0.00 0.00 0.00 4.63
5419 5940 5.739959 TGATGACAAATATTTCTGGACGGA 58.260 37.500 0.00 0.00 0.00 4.69
5420 5941 6.435430 TTGATGACAAATATTTCTGGACGG 57.565 37.500 0.00 0.00 32.73 4.79
5421 5942 8.915871 ATTTTGATGACAAATATTTCTGGACG 57.084 30.769 0.00 0.00 43.99 4.79
5504 6025 9.296400 CCGTCCGAAAATATTTGTCATTAAAAT 57.704 29.630 0.39 0.00 0.00 1.82
5505 6026 8.512956 TCCGTCCGAAAATATTTGTCATTAAAA 58.487 29.630 0.39 0.00 0.00 1.52
5506 6027 8.041829 TCCGTCCGAAAATATTTGTCATTAAA 57.958 30.769 0.39 0.00 0.00 1.52
5507 6028 7.201661 CCTCCGTCCGAAAATATTTGTCATTAA 60.202 37.037 0.39 0.00 0.00 1.40
5508 6029 6.259167 CCTCCGTCCGAAAATATTTGTCATTA 59.741 38.462 0.39 0.00 0.00 1.90
5509 6030 5.065988 CCTCCGTCCGAAAATATTTGTCATT 59.934 40.000 0.39 0.00 0.00 2.57
5510 6031 4.574828 CCTCCGTCCGAAAATATTTGTCAT 59.425 41.667 0.39 0.00 0.00 3.06
5511 6032 3.936453 CCTCCGTCCGAAAATATTTGTCA 59.064 43.478 0.39 0.00 0.00 3.58
5512 6033 3.311596 CCCTCCGTCCGAAAATATTTGTC 59.688 47.826 0.39 1.54 0.00 3.18
5513 6034 3.054948 TCCCTCCGTCCGAAAATATTTGT 60.055 43.478 0.39 0.00 0.00 2.83
5514 6035 3.537580 TCCCTCCGTCCGAAAATATTTG 58.462 45.455 0.39 0.00 0.00 2.32
5515 6036 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
5516 6037 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
5517 6038 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
5518 6039 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5519 6040 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
5520 6041 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
5521 6042 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
5522 6043 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
5523 6044 3.328931 ACTTATATACTCCCTCCGTCCGA 59.671 47.826 0.00 0.00 0.00 4.55
5524 6045 3.683802 ACTTATATACTCCCTCCGTCCG 58.316 50.000 0.00 0.00 0.00 4.79
5525 6046 7.449704 TCTTTTACTTATATACTCCCTCCGTCC 59.550 40.741 0.00 0.00 0.00 4.79
5526 6047 8.401490 TCTTTTACTTATATACTCCCTCCGTC 57.599 38.462 0.00 0.00 0.00 4.79
5527 6048 8.003629 ACTCTTTTACTTATATACTCCCTCCGT 58.996 37.037 0.00 0.00 0.00 4.69
5528 6049 8.298140 CACTCTTTTACTTATATACTCCCTCCG 58.702 40.741 0.00 0.00 0.00 4.63
5529 6050 9.145442 ACACTCTTTTACTTATATACTCCCTCC 57.855 37.037 0.00 0.00 0.00 4.30
5530 6051 9.968870 CACACTCTTTTACTTATATACTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
5531 6052 9.710818 TCACACTCTTTTACTTATATACTCCCT 57.289 33.333 0.00 0.00 0.00 4.20
5532 6053 9.747293 GTCACACTCTTTTACTTATATACTCCC 57.253 37.037 0.00 0.00 0.00 4.30
5537 6058 9.595823 GGCTTGTCACACTCTTTTACTTATATA 57.404 33.333 0.00 0.00 0.00 0.86
5538 6059 8.100791 TGGCTTGTCACACTCTTTTACTTATAT 58.899 33.333 0.00 0.00 0.00 0.86
5539 6060 7.446769 TGGCTTGTCACACTCTTTTACTTATA 58.553 34.615 0.00 0.00 0.00 0.98
5540 6061 6.296026 TGGCTTGTCACACTCTTTTACTTAT 58.704 36.000 0.00 0.00 0.00 1.73
5541 6062 5.676552 TGGCTTGTCACACTCTTTTACTTA 58.323 37.500 0.00 0.00 0.00 2.24
5542 6063 4.523083 TGGCTTGTCACACTCTTTTACTT 58.477 39.130 0.00 0.00 0.00 2.24
5543 6064 4.150897 TGGCTTGTCACACTCTTTTACT 57.849 40.909 0.00 0.00 0.00 2.24
5544 6065 6.455646 CGATATGGCTTGTCACACTCTTTTAC 60.456 42.308 0.00 0.00 0.00 2.01
5550 6071 2.604914 CACGATATGGCTTGTCACACTC 59.395 50.000 0.00 0.00 0.00 3.51
5599 6120 8.448615 GGCACATCGTCTAACTTTAGTTATTTT 58.551 33.333 3.01 0.00 39.49 1.82
5617 6138 1.338674 TGGACTAAGGTTGGCACATCG 60.339 52.381 0.00 0.00 39.30 3.84
5624 6145 2.938838 TGGTTTGTGGACTAAGGTTGG 58.061 47.619 0.00 0.00 0.00 3.77
5633 7894 0.319813 GGCATGCTTGGTTTGTGGAC 60.320 55.000 18.92 0.00 0.00 4.02
5658 7919 0.449786 TATTGGCGCAATCAACACGG 59.550 50.000 10.83 0.00 35.54 4.94
5660 7921 2.163412 TCCTTATTGGCGCAATCAACAC 59.837 45.455 10.83 0.00 35.54 3.32
5674 7935 2.027561 TGCCGTGTAGCTGTTCCTTATT 60.028 45.455 0.00 0.00 0.00 1.40
5683 7944 2.419673 TGAAAATGATGCCGTGTAGCTG 59.580 45.455 0.00 0.00 0.00 4.24
5706 7967 3.728076 CCTCATGAGGCAATTCAATGG 57.272 47.619 28.45 1.62 42.44 3.16
5741 8002 8.319057 AGGTAGTATGTGACCAGATAAATTGA 57.681 34.615 0.00 0.00 38.27 2.57
5750 8011 5.394224 CCAGTGTTAGGTAGTATGTGACCAG 60.394 48.000 0.00 0.00 38.27 4.00
5760 8023 5.625568 AACAAGAACCAGTGTTAGGTAGT 57.374 39.130 0.00 0.00 38.76 2.73
5767 8030 5.479027 ACAACCTAAAACAAGAACCAGTGTT 59.521 36.000 0.00 0.00 39.63 3.32
5768 8031 5.014202 ACAACCTAAAACAAGAACCAGTGT 58.986 37.500 0.00 0.00 0.00 3.55
5771 8034 5.828299 TCACAACCTAAAACAAGAACCAG 57.172 39.130 0.00 0.00 0.00 4.00
5862 8133 9.394767 TGCTGATTTGTAGTGTAACATTGATAT 57.605 29.630 0.00 0.00 41.43 1.63
5863 8134 8.664798 GTGCTGATTTGTAGTGTAACATTGATA 58.335 33.333 0.00 0.00 41.43 2.15
5864 8135 7.362056 GGTGCTGATTTGTAGTGTAACATTGAT 60.362 37.037 0.00 0.00 41.43 2.57
5865 8136 6.072728 GGTGCTGATTTGTAGTGTAACATTGA 60.073 38.462 0.00 0.00 41.43 2.57
5866 8137 6.086222 GGTGCTGATTTGTAGTGTAACATTG 58.914 40.000 0.00 0.00 41.43 2.82
5867 8138 5.767665 TGGTGCTGATTTGTAGTGTAACATT 59.232 36.000 0.00 0.00 41.43 2.71
5868 8139 5.312895 TGGTGCTGATTTGTAGTGTAACAT 58.687 37.500 0.00 0.00 41.43 2.71
5869 8140 4.709250 TGGTGCTGATTTGTAGTGTAACA 58.291 39.130 0.00 0.00 41.43 2.41
5870 8141 5.880054 ATGGTGCTGATTTGTAGTGTAAC 57.120 39.130 0.00 0.00 0.00 2.50
5871 8142 7.390823 TCTAATGGTGCTGATTTGTAGTGTAA 58.609 34.615 0.00 0.00 0.00 2.41
5872 8143 6.941857 TCTAATGGTGCTGATTTGTAGTGTA 58.058 36.000 0.00 0.00 0.00 2.90
5873 8144 5.804639 TCTAATGGTGCTGATTTGTAGTGT 58.195 37.500 0.00 0.00 0.00 3.55
5874 8145 6.741992 TTCTAATGGTGCTGATTTGTAGTG 57.258 37.500 0.00 0.00 0.00 2.74
5875 8146 7.112122 TGATTCTAATGGTGCTGATTTGTAGT 58.888 34.615 0.00 0.00 0.00 2.73
5876 8147 7.558161 TGATTCTAATGGTGCTGATTTGTAG 57.442 36.000 0.00 0.00 0.00 2.74
5877 8148 7.041848 CGATGATTCTAATGGTGCTGATTTGTA 60.042 37.037 0.00 0.00 0.00 2.41
5878 8149 6.238566 CGATGATTCTAATGGTGCTGATTTGT 60.239 38.462 0.00 0.00 0.00 2.83
5879 8150 6.140786 CGATGATTCTAATGGTGCTGATTTG 58.859 40.000 0.00 0.00 0.00 2.32
5880 8151 5.824624 ACGATGATTCTAATGGTGCTGATTT 59.175 36.000 0.00 0.00 0.00 2.17
5881 8152 5.237996 CACGATGATTCTAATGGTGCTGATT 59.762 40.000 0.00 0.00 28.96 2.57
5882 8153 4.753610 CACGATGATTCTAATGGTGCTGAT 59.246 41.667 0.00 0.00 28.96 2.90
5883 8154 4.122046 CACGATGATTCTAATGGTGCTGA 58.878 43.478 0.00 0.00 28.96 4.26
5884 8155 4.122046 TCACGATGATTCTAATGGTGCTG 58.878 43.478 0.00 0.00 34.74 4.41
5885 8156 4.406648 TCACGATGATTCTAATGGTGCT 57.593 40.909 0.00 0.00 34.74 4.40
5886 8157 5.484173 TTTCACGATGATTCTAATGGTGC 57.516 39.130 0.00 0.00 34.74 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.