Multiple sequence alignment - TraesCS7D01G328100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G328100 chr7D 100.000 9272 0 0 1 9272 419383691 419374420 0.000000e+00 17123.0
1 TraesCS7D01G328100 chr7D 93.162 117 8 0 8616 8732 155295715 155295831 1.240000e-38 172.0
2 TraesCS7D01G328100 chr7D 94.286 70 4 0 1 70 387255451 387255382 3.540000e-19 108.0
3 TraesCS7D01G328100 chr7A 96.920 5649 97 15 3231 8837 513985906 513991519 0.000000e+00 9396.0
4 TraesCS7D01G328100 chr7A 96.539 2485 53 5 781 3237 513983328 513985807 0.000000e+00 4082.0
5 TraesCS7D01G328100 chr7A 90.690 290 18 2 8835 9123 514015678 514015959 2.440000e-100 377.0
6 TraesCS7D01G328100 chr7A 91.192 193 17 0 5213 5405 120613006 120613198 7.140000e-66 263.0
7 TraesCS7D01G328100 chr7A 86.026 229 32 0 1892 2120 513984346 513984574 7.190000e-61 246.0
8 TraesCS7D01G328100 chr7A 96.528 144 4 1 9123 9266 514016366 514016508 4.330000e-58 237.0
9 TraesCS7D01G328100 chr7A 76.134 419 79 15 110 518 566126475 566126068 5.680000e-47 200.0
10 TraesCS7D01G328100 chr7A 91.549 71 4 2 1 71 425425919 425425851 7.660000e-16 97.1
11 TraesCS7D01G328100 chr7B 92.928 2630 111 33 5615 8200 435125408 435122810 0.000000e+00 3757.0
12 TraesCS7D01G328100 chr7B 89.711 2663 160 47 2609 5208 435128297 435125686 0.000000e+00 3295.0
13 TraesCS7D01G328100 chr7B 92.841 1746 94 11 898 2612 435130130 435128385 0.000000e+00 2503.0
14 TraesCS7D01G328100 chr7B 90.418 407 29 5 8211 8615 435122524 435122126 2.290000e-145 527.0
15 TraesCS7D01G328100 chr7B 95.000 180 7 1 5405 5584 435125691 435125514 1.970000e-71 281.0
16 TraesCS7D01G328100 chr7B 92.308 195 15 0 5213 5407 354396257 354396451 2.550000e-70 278.0
17 TraesCS7D01G328100 chr7B 91.667 192 16 0 5213 5404 13895142 13895333 5.520000e-67 267.0
18 TraesCS7D01G328100 chr7B 87.273 220 28 0 1901 2120 435129216 435128997 1.550000e-62 252.0
19 TraesCS7D01G328100 chr7B 74.953 531 108 20 110 624 107765395 107764874 4.360000e-53 220.0
20 TraesCS7D01G328100 chr7B 89.764 127 13 0 8605 8731 389125437 389125563 7.450000e-36 163.0
21 TraesCS7D01G328100 chr7B 83.799 179 14 4 3143 3321 435127926 435127763 1.250000e-33 156.0
22 TraesCS7D01G328100 chr3A 91.667 192 16 0 5213 5404 42955290 42955481 5.520000e-67 267.0
23 TraesCS7D01G328100 chr3A 89.950 199 20 0 5216 5414 25200230 25200032 3.320000e-64 257.0
24 TraesCS7D01G328100 chr2A 92.063 189 15 0 5216 5404 196254087 196253899 5.520000e-67 267.0
25 TraesCS7D01G328100 chr2A 92.063 189 15 0 5216 5404 568496210 568496398 5.520000e-67 267.0
26 TraesCS7D01G328100 chr2A 75.092 542 97 30 100 623 193585926 193586447 1.570000e-52 219.0
27 TraesCS7D01G328100 chr2A 72.674 516 107 23 118 624 519868660 519869150 3.490000e-29 141.0
28 TraesCS7D01G328100 chr6B 89.655 203 21 0 5213 5415 452390002 452390204 9.240000e-65 259.0
29 TraesCS7D01G328100 chr2D 76.975 443 89 11 101 535 486487870 486488307 3.350000e-59 241.0
30 TraesCS7D01G328100 chr2D 75.267 469 96 16 163 619 178920900 178921360 1.220000e-48 206.0
31 TraesCS7D01G328100 chr2D 92.683 123 8 1 8609 8731 571079462 571079583 9.570000e-40 176.0
32 TraesCS7D01G328100 chr2D 81.102 127 24 0 498 624 421815739 421815613 1.650000e-17 102.0
33 TraesCS7D01G328100 chr3B 78.042 378 69 10 252 621 447615569 447615940 9.370000e-55 226.0
34 TraesCS7D01G328100 chr3B 94.030 67 2 1 1 65 167748497 167748431 5.920000e-17 100.0
35 TraesCS7D01G328100 chr3B 85.965 57 8 0 550 606 317605914 317605970 2.800000e-05 62.1
36 TraesCS7D01G328100 chr6D 93.388 121 8 0 8613 8733 4235933 4235813 7.400000e-41 180.0
37 TraesCS7D01G328100 chr3D 93.220 118 8 0 8614 8731 445035133 445035250 3.440000e-39 174.0
38 TraesCS7D01G328100 chr3D 79.358 218 35 7 339 553 591861184 591861394 2.700000e-30 145.0
39 TraesCS7D01G328100 chr3D 76.824 233 42 6 108 333 425171992 425172219 4.550000e-23 121.0
40 TraesCS7D01G328100 chr3D 95.522 67 1 2 1 66 84802359 84802424 1.270000e-18 106.0
41 TraesCS7D01G328100 chr5B 73.260 546 117 22 90 624 354302271 354301744 1.240000e-38 172.0
42 TraesCS7D01G328100 chr5B 89.313 131 12 2 8602 8730 577946504 577946374 7.450000e-36 163.0
43 TraesCS7D01G328100 chr5B 95.455 66 2 1 1 65 71667880 71667815 4.580000e-18 104.0
44 TraesCS7D01G328100 chr5B 92.857 70 4 1 1 70 46471416 46471348 5.920000e-17 100.0
45 TraesCS7D01G328100 chr5B 75.974 154 26 7 467 616 588881461 588881607 1.670000e-07 69.4
46 TraesCS7D01G328100 chr4B 91.129 124 10 1 8610 8732 551690875 551690998 5.760000e-37 167.0
47 TraesCS7D01G328100 chr4B 78.621 145 23 6 254 392 420126376 420126518 1.280000e-13 89.8
48 TraesCS7D01G328100 chr6A 91.525 118 10 0 8614 8731 420415588 420415471 7.450000e-36 163.0
49 TraesCS7D01G328100 chr6A 74.855 346 70 15 100 433 27255721 27255381 3.490000e-29 141.0
50 TraesCS7D01G328100 chr6A 72.951 244 56 8 384 623 535166792 535167029 9.980000e-10 76.8
51 TraesCS7D01G328100 chrUn 76.555 209 46 3 415 623 43318406 43318611 2.740000e-20 111.0
52 TraesCS7D01G328100 chr1B 94.030 67 3 1 1 66 94579186 94579120 5.920000e-17 100.0
53 TraesCS7D01G328100 chr1B 94.118 68 1 3 1 66 455470868 455470934 5.920000e-17 100.0
54 TraesCS7D01G328100 chr1B 85.366 82 11 1 90 170 670210864 670210783 5.970000e-12 84.2
55 TraesCS7D01G328100 chr1D 93.846 65 3 1 1 64 139894814 139894878 7.660000e-16 97.1
56 TraesCS7D01G328100 chr1D 85.556 90 11 2 90 179 481614786 481614699 9.910000e-15 93.5
57 TraesCS7D01G328100 chr1A 76.243 181 38 5 101 280 539902283 539902459 3.570000e-14 91.6
58 TraesCS7D01G328100 chr2B 100.000 28 0 0 110 137 44312138 44312165 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G328100 chr7D 419374420 419383691 9271 True 17123.000000 17123 100.000000 1 9272 1 chr7D.!!$R2 9271
1 TraesCS7D01G328100 chr7A 513983328 513991519 8191 False 4574.666667 9396 93.161667 781 8837 3 chr7A.!!$F2 8056
2 TraesCS7D01G328100 chr7A 514015678 514016508 830 False 307.000000 377 93.609000 8835 9266 2 chr7A.!!$F3 431
3 TraesCS7D01G328100 chr7B 435122126 435130130 8004 True 1538.714286 3757 90.281429 898 8615 7 chr7B.!!$R2 7717
4 TraesCS7D01G328100 chr7B 107764874 107765395 521 True 220.000000 220 74.953000 110 624 1 chr7B.!!$R1 514
5 TraesCS7D01G328100 chr2A 193585926 193586447 521 False 219.000000 219 75.092000 100 623 1 chr2A.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 291 0.034896 TGTCTTCCGAGCTTCAACCC 59.965 55.000 0.00 0.00 0.00 4.11 F
433 452 0.039165 AGGGTTTAACGACGACGACC 60.039 55.000 15.32 10.65 42.66 4.79 F
737 756 0.103937 GCGAAGATGACTGCTAGGCT 59.896 55.000 0.00 0.00 0.00 4.58 F
2125 2177 0.247576 ACGACGATGATGACGACGAC 60.248 55.000 16.55 0.00 46.85 4.34 F
3397 3650 0.111061 TGCAGCAGTGAATGGAGGTT 59.889 50.000 0.00 0.00 0.00 3.50 F
4394 4691 2.152830 CAATGGCCCATGTTTTGGTTG 58.847 47.619 0.00 0.00 44.83 3.77 F
5379 5695 1.875813 CAGCGAACCGAGCAGCTAG 60.876 63.158 0.00 0.00 37.94 3.42 F
5864 6277 4.038642 GGAAAAACTGTGGCATTCTTGGTA 59.961 41.667 0.00 0.00 0.00 3.25 F
7498 7916 2.299867 TGGACACTAAACGGAAGGTACC 59.700 50.000 2.73 2.73 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2116 0.034059 ACCTCCTCTGCGTGACAAAG 59.966 55.000 0.00 0.00 0.00 2.77 R
2113 2162 1.859998 GCATCATCGTCGTCGTCATCA 60.860 52.381 1.33 0.00 38.33 3.07 R
2335 2387 2.573915 AGAGAGACCATCCTCAAAACCC 59.426 50.000 0.00 0.00 35.68 4.11 R
4039 4323 6.721318 AGTCCTAACAAGGAAAGATATGCAA 58.279 36.000 0.00 0.00 40.06 4.08 R
4640 4938 1.530655 GGTGGTGGTTGGTGAAGGG 60.531 63.158 0.00 0.00 0.00 3.95 R
6050 6463 1.153409 AGCCTGATCAGCAAGCTCG 60.153 57.895 17.76 2.89 40.18 5.03 R
7254 7672 8.719560 TTTATAATAACATGCGTAAGGACACA 57.280 30.769 0.00 0.00 44.26 3.72 R
7576 7997 0.396435 ACACTTCTTCGGATGGTGCA 59.604 50.000 0.00 0.00 34.12 4.57 R
9052 9792 0.034337 TAACACACTCCCCGCTGTTC 59.966 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.881142 TGTTCAATACACCAAAATCACTAAGG 58.119 34.615 0.00 0.00 0.00 2.69
34 35 7.040062 TGTTCAATACACCAAAATCACTAAGGG 60.040 37.037 0.00 0.00 0.00 3.95
35 36 5.949354 TCAATACACCAAAATCACTAAGGGG 59.051 40.000 0.00 0.00 0.00 4.79
36 37 2.525368 ACACCAAAATCACTAAGGGGC 58.475 47.619 0.00 0.00 0.00 5.80
37 38 2.158385 ACACCAAAATCACTAAGGGGCA 60.158 45.455 0.00 0.00 0.00 5.36
38 39 2.231235 CACCAAAATCACTAAGGGGCAC 59.769 50.000 0.00 0.00 0.00 5.01
39 40 2.110011 ACCAAAATCACTAAGGGGCACT 59.890 45.455 0.00 0.00 0.00 4.40
40 41 3.332485 ACCAAAATCACTAAGGGGCACTA 59.668 43.478 0.00 0.00 0.00 2.74
41 42 3.947834 CCAAAATCACTAAGGGGCACTAG 59.052 47.826 0.00 0.00 0.00 2.57
42 43 4.324254 CCAAAATCACTAAGGGGCACTAGA 60.324 45.833 0.00 0.00 0.00 2.43
43 44 5.440610 CAAAATCACTAAGGGGCACTAGAT 58.559 41.667 0.00 0.00 0.00 1.98
44 45 4.696479 AATCACTAAGGGGCACTAGATG 57.304 45.455 0.00 0.00 0.00 2.90
58 59 4.346970 CACTAGATGCACTTACACTCTCG 58.653 47.826 0.00 0.00 0.00 4.04
59 60 4.011023 ACTAGATGCACTTACACTCTCGT 58.989 43.478 0.00 0.00 0.00 4.18
60 61 3.944055 AGATGCACTTACACTCTCGTT 57.056 42.857 0.00 0.00 0.00 3.85
61 62 4.258702 AGATGCACTTACACTCTCGTTT 57.741 40.909 0.00 0.00 0.00 3.60
62 63 4.238514 AGATGCACTTACACTCTCGTTTC 58.761 43.478 0.00 0.00 0.00 2.78
63 64 2.750948 TGCACTTACACTCTCGTTTCC 58.249 47.619 0.00 0.00 0.00 3.13
64 65 2.364324 TGCACTTACACTCTCGTTTCCT 59.636 45.455 0.00 0.00 0.00 3.36
65 66 2.987821 GCACTTACACTCTCGTTTCCTC 59.012 50.000 0.00 0.00 0.00 3.71
66 67 3.576648 CACTTACACTCTCGTTTCCTCC 58.423 50.000 0.00 0.00 0.00 4.30
67 68 3.005472 CACTTACACTCTCGTTTCCTCCA 59.995 47.826 0.00 0.00 0.00 3.86
68 69 3.005578 ACTTACACTCTCGTTTCCTCCAC 59.994 47.826 0.00 0.00 0.00 4.02
69 70 1.705873 ACACTCTCGTTTCCTCCACT 58.294 50.000 0.00 0.00 0.00 4.00
70 71 2.872732 ACACTCTCGTTTCCTCCACTA 58.127 47.619 0.00 0.00 0.00 2.74
71 72 3.228453 ACACTCTCGTTTCCTCCACTAA 58.772 45.455 0.00 0.00 0.00 2.24
72 73 3.005578 ACACTCTCGTTTCCTCCACTAAC 59.994 47.826 0.00 0.00 0.00 2.34
73 74 2.561858 ACTCTCGTTTCCTCCACTAACC 59.438 50.000 0.00 0.00 0.00 2.85
74 75 1.897802 TCTCGTTTCCTCCACTAACCC 59.102 52.381 0.00 0.00 0.00 4.11
75 76 1.900486 CTCGTTTCCTCCACTAACCCT 59.100 52.381 0.00 0.00 0.00 4.34
76 77 3.094572 CTCGTTTCCTCCACTAACCCTA 58.905 50.000 0.00 0.00 0.00 3.53
77 78 3.509442 TCGTTTCCTCCACTAACCCTAA 58.491 45.455 0.00 0.00 0.00 2.69
78 79 3.512724 TCGTTTCCTCCACTAACCCTAAG 59.487 47.826 0.00 0.00 0.00 2.18
79 80 3.607741 GTTTCCTCCACTAACCCTAAGC 58.392 50.000 0.00 0.00 0.00 3.09
80 81 2.942604 TCCTCCACTAACCCTAAGCT 57.057 50.000 0.00 0.00 0.00 3.74
81 82 2.467880 TCCTCCACTAACCCTAAGCTG 58.532 52.381 0.00 0.00 0.00 4.24
82 83 2.188817 CCTCCACTAACCCTAAGCTGT 58.811 52.381 0.00 0.00 0.00 4.40
83 84 2.572104 CCTCCACTAACCCTAAGCTGTT 59.428 50.000 0.00 0.00 0.00 3.16
84 85 3.773119 CCTCCACTAACCCTAAGCTGTTA 59.227 47.826 0.00 0.00 0.00 2.41
85 86 4.141914 CCTCCACTAACCCTAAGCTGTTAG 60.142 50.000 16.24 16.24 45.96 2.34
93 94 2.711978 CTAAGCTGTTAGGGTTCCCC 57.288 55.000 4.02 0.00 45.90 4.81
106 107 2.576648 GGGTTCCCCTTCATACTTCACT 59.423 50.000 0.00 0.00 41.34 3.41
115 116 2.447443 TCATACTTCACTGACGAGCCT 58.553 47.619 0.00 0.00 0.00 4.58
211 213 6.857437 TGGTTAGTAGTTTAGGTTAGGGTC 57.143 41.667 0.00 0.00 0.00 4.46
222 226 6.475596 TTAGGTTAGGGTCTTTAATCCTCG 57.524 41.667 0.00 0.00 32.46 4.63
250 254 3.149648 GCTTGGGCGGATGGCATT 61.150 61.111 0.00 0.00 46.16 3.56
262 266 2.756760 GGATGGCATTGCTTCTTCTTCA 59.243 45.455 8.82 0.00 0.00 3.02
276 281 5.018539 TCTTCTTCAAGTTTGTCTTCCGA 57.981 39.130 0.00 0.00 33.63 4.55
277 282 5.050490 TCTTCTTCAAGTTTGTCTTCCGAG 58.950 41.667 0.00 0.00 33.63 4.63
278 283 3.131396 TCTTCAAGTTTGTCTTCCGAGC 58.869 45.455 0.00 0.00 33.63 5.03
279 284 2.910688 TCAAGTTTGTCTTCCGAGCT 57.089 45.000 0.00 0.00 33.63 4.09
281 286 3.131396 TCAAGTTTGTCTTCCGAGCTTC 58.869 45.455 0.00 0.00 33.63 3.86
283 288 3.194005 AGTTTGTCTTCCGAGCTTCAA 57.806 42.857 0.00 0.00 0.00 2.69
286 291 0.034896 TGTCTTCCGAGCTTCAACCC 59.965 55.000 0.00 0.00 0.00 4.11
289 294 0.391793 CTTCCGAGCTTCAACCCTCC 60.392 60.000 0.00 0.00 0.00 4.30
308 317 2.030540 TCCTTCGTTTGTCTGGACGTAG 60.031 50.000 0.00 0.00 40.03 3.51
327 337 6.708901 CGTAGTAACGGAGCTCAAGCGTAA 62.709 50.000 17.19 0.87 45.50 3.18
338 348 2.749621 CTCAAGCGTAAATTCCTGCCTT 59.250 45.455 0.00 0.00 0.00 4.35
349 359 2.679716 CTGCCTTCTCCTTGGGGG 59.320 66.667 0.00 0.00 0.00 5.40
350 360 2.121506 TGCCTTCTCCTTGGGGGT 60.122 61.111 0.00 0.00 36.25 4.95
352 362 3.090765 CCTTCTCCTTGGGGGTGG 58.909 66.667 0.00 0.00 36.25 4.61
353 363 2.356667 CTTCTCCTTGGGGGTGGC 59.643 66.667 0.00 0.00 36.25 5.01
354 364 3.628646 CTTCTCCTTGGGGGTGGCG 62.629 68.421 0.00 0.00 36.25 5.69
355 365 4.649705 TCTCCTTGGGGGTGGCGA 62.650 66.667 0.00 0.00 36.25 5.54
357 367 4.649705 TCCTTGGGGGTGGCGAGA 62.650 66.667 0.00 0.00 36.25 4.04
359 369 2.677228 CTTGGGGGTGGCGAGATT 59.323 61.111 0.00 0.00 0.00 2.40
360 370 1.632018 CCTTGGGGGTGGCGAGATTA 61.632 60.000 0.00 0.00 0.00 1.75
362 372 0.912487 TTGGGGGTGGCGAGATTAGT 60.912 55.000 0.00 0.00 0.00 2.24
363 373 1.146263 GGGGGTGGCGAGATTAGTG 59.854 63.158 0.00 0.00 0.00 2.74
364 374 1.623542 GGGGGTGGCGAGATTAGTGT 61.624 60.000 0.00 0.00 0.00 3.55
371 381 3.994392 GTGGCGAGATTAGTGTTTTCTCA 59.006 43.478 0.00 0.00 36.51 3.27
392 411 1.003003 TCATGTGGCGAGATTTGGTGA 59.997 47.619 0.00 0.00 0.00 4.02
411 430 7.239763 TGGTGACAACTGTTTCAGATCTATA 57.760 36.000 0.00 0.00 37.44 1.31
433 452 0.039165 AGGGTTTAACGACGACGACC 60.039 55.000 15.32 10.65 42.66 4.79
476 495 2.183478 ATGGACACATGCACGAAGAA 57.817 45.000 0.00 0.00 35.57 2.52
477 496 1.960417 TGGACACATGCACGAAGAAA 58.040 45.000 0.00 0.00 0.00 2.52
484 503 1.135972 CATGCACGAAGAAACTTCCCG 60.136 52.381 0.00 0.00 0.00 5.14
488 507 0.971386 ACGAAGAAACTTCCCGGCTA 59.029 50.000 0.00 0.00 0.00 3.93
493 512 3.477210 AGAAACTTCCCGGCTATCATC 57.523 47.619 0.00 0.00 0.00 2.92
494 513 2.771943 AGAAACTTCCCGGCTATCATCA 59.228 45.455 0.00 0.00 0.00 3.07
495 514 2.918712 AACTTCCCGGCTATCATCAG 57.081 50.000 0.00 0.00 0.00 2.90
496 515 1.051812 ACTTCCCGGCTATCATCAGG 58.948 55.000 0.00 0.00 0.00 3.86
504 523 2.103094 CGGCTATCATCAGGAAGGTCAA 59.897 50.000 0.00 0.00 0.00 3.18
514 533 1.014564 GGAAGGTCAAGCCGACTTCG 61.015 60.000 4.07 0.00 44.70 3.79
530 549 4.503314 CGGTAAGGGGGCGACGAC 62.503 72.222 0.00 0.00 0.00 4.34
545 564 2.964925 GACAGCGACACGTTGGCA 60.965 61.111 8.77 0.00 45.13 4.92
546 565 2.512745 ACAGCGACACGTTGGCAA 60.513 55.556 11.86 0.00 42.05 4.52
560 579 0.878416 TGGCAACACGTTCTAATGGC 59.122 50.000 0.00 0.00 46.17 4.40
561 580 0.878416 GGCAACACGTTCTAATGGCA 59.122 50.000 0.00 0.00 36.65 4.92
562 581 1.135689 GGCAACACGTTCTAATGGCAG 60.136 52.381 0.00 0.00 36.65 4.85
563 582 1.535462 GCAACACGTTCTAATGGCAGT 59.465 47.619 0.00 0.00 0.00 4.40
564 583 2.739913 GCAACACGTTCTAATGGCAGTA 59.260 45.455 0.00 0.00 0.00 2.74
565 584 3.181520 GCAACACGTTCTAATGGCAGTAG 60.182 47.826 15.47 15.47 0.00 2.57
566 585 3.955650 ACACGTTCTAATGGCAGTAGT 57.044 42.857 20.11 0.45 0.00 2.73
567 586 3.585862 ACACGTTCTAATGGCAGTAGTG 58.414 45.455 20.11 14.45 0.00 2.74
568 587 3.257375 ACACGTTCTAATGGCAGTAGTGA 59.743 43.478 20.11 8.88 0.00 3.41
569 588 3.612860 CACGTTCTAATGGCAGTAGTGAC 59.387 47.826 20.11 17.59 0.00 3.67
570 589 3.187700 CGTTCTAATGGCAGTAGTGACC 58.812 50.000 20.11 2.61 0.00 4.02
571 590 3.187700 GTTCTAATGGCAGTAGTGACCG 58.812 50.000 20.11 0.00 0.00 4.79
572 591 2.453521 TCTAATGGCAGTAGTGACCGT 58.546 47.619 20.11 0.58 0.00 4.83
573 592 2.829720 TCTAATGGCAGTAGTGACCGTT 59.170 45.455 20.11 17.23 34.98 4.44
574 593 2.094762 AATGGCAGTAGTGACCGTTC 57.905 50.000 0.00 0.00 28.56 3.95
575 594 0.108804 ATGGCAGTAGTGACCGTTCG 60.109 55.000 0.00 0.00 0.00 3.95
576 595 1.174078 TGGCAGTAGTGACCGTTCGA 61.174 55.000 0.00 0.00 0.00 3.71
577 596 0.172803 GGCAGTAGTGACCGTTCGAT 59.827 55.000 0.42 0.00 0.00 3.59
578 597 1.269166 GCAGTAGTGACCGTTCGATG 58.731 55.000 0.42 0.00 0.00 3.84
579 598 1.909376 CAGTAGTGACCGTTCGATGG 58.091 55.000 2.82 2.82 0.00 3.51
580 599 1.201647 CAGTAGTGACCGTTCGATGGT 59.798 52.381 9.43 9.43 40.99 3.55
599 618 7.721286 GATGGTCTCGAAATCTCAATGTAAT 57.279 36.000 0.00 0.00 0.00 1.89
600 619 8.147642 GATGGTCTCGAAATCTCAATGTAATT 57.852 34.615 0.00 0.00 36.63 1.40
601 620 7.921786 TGGTCTCGAAATCTCAATGTAATTT 57.078 32.000 0.00 0.00 31.22 1.82
602 621 8.335532 TGGTCTCGAAATCTCAATGTAATTTT 57.664 30.769 0.00 0.00 31.22 1.82
603 622 8.792633 TGGTCTCGAAATCTCAATGTAATTTTT 58.207 29.630 0.00 0.00 31.22 1.94
624 643 8.537049 TTTTTATCATGTTTGAGATGCTTTGG 57.463 30.769 0.00 0.00 34.73 3.28
625 644 6.839124 TTATCATGTTTGAGATGCTTTGGT 57.161 33.333 0.00 0.00 34.73 3.67
626 645 4.771590 TCATGTTTGAGATGCTTTGGTC 57.228 40.909 0.00 0.00 0.00 4.02
627 646 3.507233 TCATGTTTGAGATGCTTTGGTCC 59.493 43.478 0.00 0.00 0.00 4.46
628 647 2.238521 TGTTTGAGATGCTTTGGTCCC 58.761 47.619 0.00 0.00 0.00 4.46
629 648 1.200020 GTTTGAGATGCTTTGGTCCCG 59.800 52.381 0.00 0.00 0.00 5.14
630 649 0.960364 TTGAGATGCTTTGGTCCCGC 60.960 55.000 0.00 0.00 0.00 6.13
631 650 1.377202 GAGATGCTTTGGTCCCGCA 60.377 57.895 0.76 0.76 38.14 5.69
632 651 1.648467 GAGATGCTTTGGTCCCGCAC 61.648 60.000 0.30 0.00 36.37 5.34
633 652 1.971167 GATGCTTTGGTCCCGCACA 60.971 57.895 0.30 0.00 36.37 4.57
634 653 1.304381 ATGCTTTGGTCCCGCACAT 60.304 52.632 0.30 0.00 36.37 3.21
635 654 1.597797 ATGCTTTGGTCCCGCACATG 61.598 55.000 0.00 0.00 36.37 3.21
636 655 1.971167 GCTTTGGTCCCGCACATGA 60.971 57.895 0.00 0.00 0.00 3.07
637 656 1.315257 GCTTTGGTCCCGCACATGAT 61.315 55.000 0.00 0.00 0.00 2.45
638 657 2.016604 GCTTTGGTCCCGCACATGATA 61.017 52.381 0.00 0.00 0.00 2.15
639 658 1.942657 CTTTGGTCCCGCACATGATAG 59.057 52.381 0.00 0.00 0.00 2.08
640 659 0.463654 TTGGTCCCGCACATGATAGC 60.464 55.000 0.00 0.00 0.00 2.97
641 660 1.598130 GGTCCCGCACATGATAGCC 60.598 63.158 0.00 0.00 0.00 3.93
642 661 1.598130 GTCCCGCACATGATAGCCC 60.598 63.158 0.00 0.00 0.00 5.19
643 662 2.281761 CCCGCACATGATAGCCCC 60.282 66.667 0.00 0.00 0.00 5.80
644 663 2.281761 CCGCACATGATAGCCCCC 60.282 66.667 0.00 0.00 0.00 5.40
645 664 2.510411 CGCACATGATAGCCCCCA 59.490 61.111 0.00 0.00 0.00 4.96
646 665 1.152984 CGCACATGATAGCCCCCAA 60.153 57.895 0.00 0.00 0.00 4.12
647 666 0.751277 CGCACATGATAGCCCCCAAA 60.751 55.000 0.00 0.00 0.00 3.28
648 667 0.746659 GCACATGATAGCCCCCAAAC 59.253 55.000 0.00 0.00 0.00 2.93
649 668 1.686115 GCACATGATAGCCCCCAAACT 60.686 52.381 0.00 0.00 0.00 2.66
650 669 2.026641 CACATGATAGCCCCCAAACTG 58.973 52.381 0.00 0.00 0.00 3.16
651 670 1.035139 CATGATAGCCCCCAAACTGC 58.965 55.000 0.00 0.00 0.00 4.40
652 671 0.630673 ATGATAGCCCCCAAACTGCA 59.369 50.000 0.00 0.00 0.00 4.41
653 672 0.323360 TGATAGCCCCCAAACTGCAC 60.323 55.000 0.00 0.00 0.00 4.57
654 673 1.000359 ATAGCCCCCAAACTGCACC 60.000 57.895 0.00 0.00 0.00 5.01
655 674 1.799157 ATAGCCCCCAAACTGCACCA 61.799 55.000 0.00 0.00 0.00 4.17
656 675 2.424842 TAGCCCCCAAACTGCACCAG 62.425 60.000 0.00 0.00 37.52 4.00
657 676 3.305516 CCCCCAAACTGCACCAGC 61.306 66.667 0.00 0.00 42.57 4.85
658 677 3.305516 CCCCAAACTGCACCAGCC 61.306 66.667 0.00 0.00 41.13 4.85
659 678 3.673484 CCCAAACTGCACCAGCCG 61.673 66.667 0.00 0.00 41.13 5.52
660 679 4.347453 CCAAACTGCACCAGCCGC 62.347 66.667 0.00 0.00 41.13 6.53
661 680 4.347453 CAAACTGCACCAGCCGCC 62.347 66.667 0.00 0.00 41.13 6.13
683 702 2.754648 AGGGCTTTACCTGACGACA 58.245 52.632 0.00 0.00 40.04 4.35
684 703 1.276622 AGGGCTTTACCTGACGACAT 58.723 50.000 0.00 0.00 40.04 3.06
685 704 1.628846 AGGGCTTTACCTGACGACATT 59.371 47.619 0.00 0.00 40.04 2.71
686 705 1.737793 GGGCTTTACCTGACGACATTG 59.262 52.381 0.00 0.00 39.10 2.82
687 706 2.423577 GGCTTTACCTGACGACATTGT 58.576 47.619 0.00 0.00 34.51 2.71
688 707 2.159627 GGCTTTACCTGACGACATTGTG 59.840 50.000 0.00 0.00 34.51 3.33
689 708 2.806244 GCTTTACCTGACGACATTGTGT 59.194 45.455 0.00 0.00 0.00 3.72
690 709 3.120649 GCTTTACCTGACGACATTGTGTC 60.121 47.826 0.00 3.44 43.65 3.67
697 716 4.057224 GACATTGTGTCGTGGGCA 57.943 55.556 0.00 0.00 37.67 5.36
698 717 1.868997 GACATTGTGTCGTGGGCAG 59.131 57.895 0.00 0.00 37.67 4.85
699 718 2.187599 GACATTGTGTCGTGGGCAGC 62.188 60.000 0.00 0.00 37.67 5.25
700 719 2.112928 ATTGTGTCGTGGGCAGCA 59.887 55.556 0.00 0.00 0.00 4.41
701 720 1.303561 ATTGTGTCGTGGGCAGCAT 60.304 52.632 0.00 0.00 0.00 3.79
702 721 1.588824 ATTGTGTCGTGGGCAGCATG 61.589 55.000 0.00 0.00 40.87 4.06
703 722 3.434319 GTGTCGTGGGCAGCATGG 61.434 66.667 0.00 0.00 35.86 3.66
704 723 4.720902 TGTCGTGGGCAGCATGGG 62.721 66.667 0.00 0.00 35.86 4.00
705 724 4.408821 GTCGTGGGCAGCATGGGA 62.409 66.667 0.00 0.00 35.86 4.37
706 725 3.410628 TCGTGGGCAGCATGGGAT 61.411 61.111 0.00 0.00 35.86 3.85
707 726 3.214123 CGTGGGCAGCATGGGATG 61.214 66.667 0.00 0.00 35.86 3.51
708 727 2.836360 GTGGGCAGCATGGGATGG 60.836 66.667 0.00 0.00 35.86 3.51
709 728 3.022497 TGGGCAGCATGGGATGGA 61.022 61.111 0.00 0.00 35.86 3.41
710 729 2.203451 GGGCAGCATGGGATGGAG 60.203 66.667 0.00 0.00 35.86 3.86
711 730 2.203451 GGCAGCATGGGATGGAGG 60.203 66.667 0.00 0.00 35.86 4.30
712 731 2.203451 GCAGCATGGGATGGAGGG 60.203 66.667 0.00 0.00 35.86 4.30
713 732 3.065787 GCAGCATGGGATGGAGGGT 62.066 63.158 0.00 0.00 35.86 4.34
714 733 1.152819 CAGCATGGGATGGAGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
715 734 2.196776 GCATGGGATGGAGGGTGG 59.803 66.667 0.00 0.00 0.00 4.61
716 735 2.196776 CATGGGATGGAGGGTGGC 59.803 66.667 0.00 0.00 0.00 5.01
717 736 3.492353 ATGGGATGGAGGGTGGCG 61.492 66.667 0.00 0.00 0.00 5.69
725 744 4.162690 GAGGGTGGCGGCGAAGAT 62.163 66.667 12.98 0.00 0.00 2.40
726 745 4.473520 AGGGTGGCGGCGAAGATG 62.474 66.667 12.98 0.00 0.00 2.90
727 746 4.467084 GGGTGGCGGCGAAGATGA 62.467 66.667 12.98 0.00 0.00 2.92
728 747 3.195698 GGTGGCGGCGAAGATGAC 61.196 66.667 12.98 0.00 0.00 3.06
729 748 2.125512 GTGGCGGCGAAGATGACT 60.126 61.111 12.98 0.00 0.00 3.41
730 749 2.125552 TGGCGGCGAAGATGACTG 60.126 61.111 12.98 0.00 0.00 3.51
731 750 3.567797 GGCGGCGAAGATGACTGC 61.568 66.667 12.98 0.00 34.88 4.40
732 751 2.510238 GCGGCGAAGATGACTGCT 60.510 61.111 12.98 0.00 32.83 4.24
733 752 1.226974 GCGGCGAAGATGACTGCTA 60.227 57.895 12.98 0.00 32.83 3.49
734 753 1.211818 GCGGCGAAGATGACTGCTAG 61.212 60.000 12.98 0.00 32.83 3.42
735 754 0.596083 CGGCGAAGATGACTGCTAGG 60.596 60.000 0.00 0.00 0.00 3.02
736 755 0.878086 GGCGAAGATGACTGCTAGGC 60.878 60.000 0.00 0.00 0.00 3.93
737 756 0.103937 GCGAAGATGACTGCTAGGCT 59.896 55.000 0.00 0.00 0.00 4.58
738 757 1.472376 GCGAAGATGACTGCTAGGCTT 60.472 52.381 0.00 0.00 0.00 4.35
739 758 2.468831 CGAAGATGACTGCTAGGCTTC 58.531 52.381 0.00 0.00 0.00 3.86
740 759 2.801342 CGAAGATGACTGCTAGGCTTCC 60.801 54.545 0.00 0.00 28.18 3.46
741 760 0.749649 AGATGACTGCTAGGCTTCCG 59.250 55.000 0.00 0.00 28.18 4.30
742 761 0.878086 GATGACTGCTAGGCTTCCGC 60.878 60.000 0.00 0.00 0.00 5.54
818 837 1.937191 GGAGATCCTCCCTCAGATCC 58.063 60.000 1.60 0.00 44.36 3.36
819 838 1.544724 GAGATCCTCCCTCAGATCCG 58.455 60.000 0.00 0.00 39.83 4.18
861 880 0.251916 TCTGAAAATCGGACGGCCAT 59.748 50.000 8.76 0.00 0.00 4.40
867 886 2.650813 AATCGGACGGCCATGAGAGC 62.651 60.000 8.76 0.00 0.00 4.09
873 892 2.993008 GGCCATGAGAGCTCACCA 59.007 61.111 17.77 13.68 43.11 4.17
883 902 3.569701 TGAGAGCTCACCAAAAATCAACC 59.430 43.478 17.77 0.00 34.14 3.77
884 903 3.823304 GAGAGCTCACCAAAAATCAACCT 59.177 43.478 17.77 0.00 0.00 3.50
885 904 4.985538 AGAGCTCACCAAAAATCAACCTA 58.014 39.130 17.77 0.00 0.00 3.08
892 911 7.176589 TCACCAAAAATCAACCTAAACTTGT 57.823 32.000 0.00 0.00 0.00 3.16
923 942 3.387374 TCTCTGATCAGCATTCCCTCTTC 59.613 47.826 18.36 0.00 0.00 2.87
1261 1283 0.396811 CCGACTCCTTCAACCTTGGT 59.603 55.000 0.00 0.00 0.00 3.67
1787 1836 5.455392 TTTGGATGATGAAGAATCTGGGA 57.545 39.130 0.00 0.00 36.15 4.37
1807 1856 2.692741 GGGTCTCCCAGGGGAAGG 60.693 72.222 5.33 0.00 44.65 3.46
1907 1956 3.314080 CAGCGGTGAAGAAGTTGGTTTTA 59.686 43.478 9.50 0.00 0.00 1.52
2067 2116 1.156736 CGTGGTGGAAGGATGTCAAC 58.843 55.000 0.00 0.00 0.00 3.18
2113 2162 3.526931 AGTGATTTGGATGACGACGAT 57.473 42.857 0.00 0.00 0.00 3.73
2125 2177 0.247576 ACGACGATGATGACGACGAC 60.248 55.000 16.55 0.00 46.85 4.34
2335 2387 0.327259 ATGAGGATGATGGGCCATCG 59.673 55.000 34.64 0.00 43.14 3.84
2383 2435 2.312741 TGATTCTGGCCAGGAGGATTTT 59.687 45.455 32.23 7.73 36.89 1.82
2386 2438 1.428912 TCTGGCCAGGAGGATTTTGTT 59.571 47.619 32.23 0.00 36.89 2.83
2702 2845 3.620374 CGTGAATGACTGCTTGCTATCTT 59.380 43.478 0.00 0.00 0.00 2.40
2901 3048 4.320608 AGTATTTGCCTGTTGTTTGGTG 57.679 40.909 0.00 0.00 0.00 4.17
2920 3067 6.795098 TGGTGTGTTTTCATCATAGTGTAC 57.205 37.500 0.00 0.00 0.00 2.90
3397 3650 0.111061 TGCAGCAGTGAATGGAGGTT 59.889 50.000 0.00 0.00 0.00 3.50
4270 4562 2.807676 TGGCTTCATTTCCTTCCCTTC 58.192 47.619 0.00 0.00 0.00 3.46
4394 4691 2.152830 CAATGGCCCATGTTTTGGTTG 58.847 47.619 0.00 0.00 44.83 3.77
4416 4713 9.869757 GGTTGCTCAAATATTTAACAGGTTAAT 57.130 29.630 11.69 0.00 35.27 1.40
4449 4746 2.982488 ACAGGAGGAATAGGGCATTAGG 59.018 50.000 0.00 0.00 0.00 2.69
4565 4863 8.349983 GCGTTGACCCTGTATTTAATGATTATT 58.650 33.333 0.00 0.00 0.00 1.40
4640 4938 2.750350 CCACTCACCCCACCTCAC 59.250 66.667 0.00 0.00 0.00 3.51
4849 5155 5.939764 TCTGTTTATAGCTCCACACATCT 57.060 39.130 0.00 0.00 0.00 2.90
4878 5184 5.233902 GTCACACAGCTCAGCTATCTTATTG 59.766 44.000 0.00 0.00 36.40 1.90
5044 5360 8.103305 ACAATATTCTGGAGTTGTGACTAATGT 58.897 33.333 0.00 0.00 35.88 2.71
5135 5451 9.300441 CAAAAATCAACACGCAACAATTAATAC 57.700 29.630 0.00 0.00 0.00 1.89
5236 5552 6.001460 TGGTCAAGAATTCGTCCAATTAACT 58.999 36.000 0.00 0.00 34.60 2.24
5291 5607 4.106197 GTCACTGAGTAGCCGATAAACTG 58.894 47.826 0.00 0.00 0.00 3.16
5379 5695 1.875813 CAGCGAACCGAGCAGCTAG 60.876 63.158 0.00 0.00 37.94 3.42
5401 5717 5.127491 AGTGGTTAACGATTTCCTCAACAA 58.873 37.500 0.00 0.00 0.00 2.83
5402 5718 5.768164 AGTGGTTAACGATTTCCTCAACAAT 59.232 36.000 0.00 0.00 0.00 2.71
5403 5719 5.856455 GTGGTTAACGATTTCCTCAACAATG 59.144 40.000 0.00 0.00 0.00 2.82
5404 5720 5.048364 TGGTTAACGATTTCCTCAACAATGG 60.048 40.000 0.00 0.00 0.00 3.16
5592 5997 4.531854 TCACTGAACTTGGGACATTGAAA 58.468 39.130 0.00 0.00 39.30 2.69
5864 6277 4.038642 GGAAAAACTGTGGCATTCTTGGTA 59.961 41.667 0.00 0.00 0.00 3.25
7498 7916 2.299867 TGGACACTAAACGGAAGGTACC 59.700 50.000 2.73 2.73 0.00 3.34
7540 7961 4.747108 CACAACTTGTTGGTGTTTTGACAA 59.253 37.500 16.48 0.00 45.79 3.18
7767 8189 8.370940 TGTTTGGAAAGCCATCACAATATTTTA 58.629 29.630 0.00 0.00 45.46 1.52
7769 8191 9.434420 TTTGGAAAGCCATCACAATATTTTAAG 57.566 29.630 0.00 0.00 45.46 1.85
7771 8193 6.479990 GGAAAGCCATCACAATATTTTAAGGC 59.520 38.462 0.00 0.00 39.82 4.35
7772 8194 6.543430 AAGCCATCACAATATTTTAAGGCA 57.457 33.333 14.50 0.00 41.88 4.75
7773 8195 5.906073 AGCCATCACAATATTTTAAGGCAC 58.094 37.500 14.50 0.00 41.88 5.01
7774 8196 5.421693 AGCCATCACAATATTTTAAGGCACA 59.578 36.000 14.50 0.00 41.88 4.57
7839 8301 8.999431 CAGTAGCAAAATGAACCTACTTTAGAA 58.001 33.333 0.00 0.00 38.65 2.10
7963 8426 2.211250 AAGCTCTTGCACATGTGGAT 57.789 45.000 26.55 6.27 42.74 3.41
8258 8996 5.465390 CCTGTGTTTCGAGTGAGTAATCAAA 59.535 40.000 0.00 0.00 0.00 2.69
8523 9263 5.016831 GTGGTTCTGTCCCCTTCATATTTT 58.983 41.667 0.00 0.00 0.00 1.82
8524 9264 5.480422 GTGGTTCTGTCCCCTTCATATTTTT 59.520 40.000 0.00 0.00 0.00 1.94
8527 9267 6.183360 GGTTCTGTCCCCTTCATATTTTTAGC 60.183 42.308 0.00 0.00 0.00 3.09
8594 9334 3.065371 CCGCCAAGATGAATGTTTCCTAC 59.935 47.826 0.00 0.00 0.00 3.18
8632 9372 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
8720 9460 1.314730 TGGGACAAGCTTTTTCGGAC 58.685 50.000 0.00 0.00 31.92 4.79
8721 9461 1.314730 GGGACAAGCTTTTTCGGACA 58.685 50.000 0.00 0.00 0.00 4.02
8732 9472 3.887621 TTTTCGGACAGAGGGAGTATG 57.112 47.619 0.00 0.00 0.00 2.39
8813 9553 4.100653 ACTCCTGATCCCATATATGCGATG 59.899 45.833 15.94 5.62 0.00 3.84
8821 9561 4.935205 TCCCATATATGCGATGTAACTTGC 59.065 41.667 7.24 0.00 0.00 4.01
8833 9573 5.447279 CGATGTAACTTGCAGTCCCAAATAC 60.447 44.000 0.00 0.00 0.00 1.89
8841 9581 1.468520 CAGTCCCAAATACGCAACCTG 59.531 52.381 0.00 0.00 0.00 4.00
8885 9625 3.122445 GGTCGTACCAGAATTTCGTTGAC 59.878 47.826 0.00 0.00 38.42 3.18
8888 9628 3.367025 CGTACCAGAATTTCGTTGACCTC 59.633 47.826 0.00 0.00 0.00 3.85
8894 9634 4.757149 CAGAATTTCGTTGACCTCTCCTTT 59.243 41.667 0.00 0.00 0.00 3.11
8910 9650 3.403968 TCCTTTTGCATACACGCACTTA 58.596 40.909 0.00 0.00 42.87 2.24
8928 9668 4.670621 CACTTACGTTTGTTGAACTGATGC 59.329 41.667 0.00 0.00 36.06 3.91
8944 9684 4.572389 ACTGATGCAGTATGAATTTCGTCC 59.428 41.667 0.00 0.00 43.46 4.79
8963 9703 5.813672 TCGTCCCAGTTCTATAAATTTTCCG 59.186 40.000 0.00 0.00 0.00 4.30
8981 9721 6.844696 TTTCCGATGTCTGTTAATATCAGC 57.155 37.500 0.00 0.00 33.48 4.26
8982 9722 4.883083 TCCGATGTCTGTTAATATCAGCC 58.117 43.478 0.00 0.00 33.48 4.85
8984 9724 4.926238 CCGATGTCTGTTAATATCAGCCTC 59.074 45.833 0.00 0.00 33.48 4.70
9014 9754 3.884037 ATCTTTGTGACCCAGTTTCCT 57.116 42.857 0.00 0.00 0.00 3.36
9021 9761 3.181448 TGTGACCCAGTTTCCTAAGTTCC 60.181 47.826 0.00 0.00 0.00 3.62
9042 9782 9.821240 AGTTCCATTATATTTACATTGGCCATA 57.179 29.630 6.09 0.00 0.00 2.74
9053 9793 7.921041 TTACATTGGCCATATTTATTTGGGA 57.079 32.000 6.09 0.00 33.40 4.37
9054 9794 6.821616 ACATTGGCCATATTTATTTGGGAA 57.178 33.333 6.09 0.00 33.40 3.97
9055 9795 6.591001 ACATTGGCCATATTTATTTGGGAAC 58.409 36.000 6.09 0.00 33.40 3.62
9056 9796 6.157645 ACATTGGCCATATTTATTTGGGAACA 59.842 34.615 6.09 0.00 39.83 3.18
9057 9797 5.867903 TGGCCATATTTATTTGGGAACAG 57.132 39.130 0.00 0.00 44.54 3.16
9058 9798 4.100808 TGGCCATATTTATTTGGGAACAGC 59.899 41.667 0.00 0.00 44.54 4.40
9059 9799 4.298332 GCCATATTTATTTGGGAACAGCG 58.702 43.478 2.14 0.00 44.54 5.18
9072 9812 0.690762 AACAGCGGGGAGTGTGTTAT 59.309 50.000 0.00 0.00 31.37 1.89
9186 10334 3.937079 CCCGTACTGAGTTTGAATTACCC 59.063 47.826 0.00 0.00 0.00 3.69
9223 10371 0.582005 GCGGACACCTAATTGCGATC 59.418 55.000 0.00 0.00 0.00 3.69
9224 10372 0.852777 CGGACACCTAATTGCGATCG 59.147 55.000 11.69 11.69 0.00 3.69
9225 10373 1.801395 CGGACACCTAATTGCGATCGT 60.801 52.381 17.81 0.00 0.00 3.73
9266 10414 8.902735 GCAGCAACTTGTAGATTAACTAAAAAC 58.097 33.333 0.00 0.00 29.12 2.43
9267 10415 9.944663 CAGCAACTTGTAGATTAACTAAAAACA 57.055 29.630 0.00 0.00 29.12 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.040062 CCCTTAGTGATTTTGGTGTATTGAACA 60.040 37.037 0.00 0.00 35.06 3.18
9 10 7.312899 CCCTTAGTGATTTTGGTGTATTGAAC 58.687 38.462 0.00 0.00 0.00 3.18
10 11 6.435904 CCCCTTAGTGATTTTGGTGTATTGAA 59.564 38.462 0.00 0.00 0.00 2.69
11 12 5.949354 CCCCTTAGTGATTTTGGTGTATTGA 59.051 40.000 0.00 0.00 0.00 2.57
12 13 5.394115 GCCCCTTAGTGATTTTGGTGTATTG 60.394 44.000 0.00 0.00 0.00 1.90
13 14 4.709886 GCCCCTTAGTGATTTTGGTGTATT 59.290 41.667 0.00 0.00 0.00 1.89
14 15 4.264172 TGCCCCTTAGTGATTTTGGTGTAT 60.264 41.667 0.00 0.00 0.00 2.29
15 16 3.074687 TGCCCCTTAGTGATTTTGGTGTA 59.925 43.478 0.00 0.00 0.00 2.90
16 17 2.158385 TGCCCCTTAGTGATTTTGGTGT 60.158 45.455 0.00 0.00 0.00 4.16
17 18 2.231235 GTGCCCCTTAGTGATTTTGGTG 59.769 50.000 0.00 0.00 0.00 4.17
18 19 2.110011 AGTGCCCCTTAGTGATTTTGGT 59.890 45.455 0.00 0.00 0.00 3.67
19 20 2.807676 AGTGCCCCTTAGTGATTTTGG 58.192 47.619 0.00 0.00 0.00 3.28
20 21 4.843728 TCTAGTGCCCCTTAGTGATTTTG 58.156 43.478 0.00 0.00 0.00 2.44
21 22 5.440610 CATCTAGTGCCCCTTAGTGATTTT 58.559 41.667 0.00 0.00 0.00 1.82
22 23 5.041191 CATCTAGTGCCCCTTAGTGATTT 57.959 43.478 0.00 0.00 0.00 2.17
23 24 4.696479 CATCTAGTGCCCCTTAGTGATT 57.304 45.455 0.00 0.00 0.00 2.57
36 37 4.142578 ACGAGAGTGTAAGTGCATCTAGTG 60.143 45.833 0.00 0.00 46.97 2.74
37 38 4.011023 ACGAGAGTGTAAGTGCATCTAGT 58.989 43.478 0.00 0.00 46.97 2.57
38 39 4.624336 ACGAGAGTGTAAGTGCATCTAG 57.376 45.455 0.00 0.00 46.97 2.43
53 54 2.094130 GGGTTAGTGGAGGAAACGAGAG 60.094 54.545 0.00 0.00 0.00 3.20
54 55 1.897802 GGGTTAGTGGAGGAAACGAGA 59.102 52.381 0.00 0.00 0.00 4.04
55 56 1.900486 AGGGTTAGTGGAGGAAACGAG 59.100 52.381 0.00 0.00 0.00 4.18
56 57 2.019807 AGGGTTAGTGGAGGAAACGA 57.980 50.000 0.00 0.00 0.00 3.85
57 58 3.858247 CTTAGGGTTAGTGGAGGAAACG 58.142 50.000 0.00 0.00 0.00 3.60
58 59 3.263681 AGCTTAGGGTTAGTGGAGGAAAC 59.736 47.826 0.00 0.00 0.00 2.78
59 60 3.263425 CAGCTTAGGGTTAGTGGAGGAAA 59.737 47.826 0.00 0.00 0.00 3.13
60 61 2.838202 CAGCTTAGGGTTAGTGGAGGAA 59.162 50.000 0.00 0.00 0.00 3.36
61 62 2.225547 ACAGCTTAGGGTTAGTGGAGGA 60.226 50.000 0.00 0.00 0.00 3.71
62 63 2.188817 ACAGCTTAGGGTTAGTGGAGG 58.811 52.381 0.00 0.00 0.00 4.30
63 64 3.983044 AACAGCTTAGGGTTAGTGGAG 57.017 47.619 0.00 0.00 0.00 3.86
64 65 3.773119 CCTAACAGCTTAGGGTTAGTGGA 59.227 47.826 16.30 0.00 44.00 4.02
65 66 4.138487 CCTAACAGCTTAGGGTTAGTGG 57.862 50.000 16.30 4.17 44.00 4.00
87 88 4.254492 GTCAGTGAAGTATGAAGGGGAAC 58.746 47.826 0.00 0.00 0.00 3.62
88 89 3.056107 CGTCAGTGAAGTATGAAGGGGAA 60.056 47.826 0.00 0.00 0.00 3.97
89 90 2.496070 CGTCAGTGAAGTATGAAGGGGA 59.504 50.000 0.00 0.00 0.00 4.81
90 91 2.496070 TCGTCAGTGAAGTATGAAGGGG 59.504 50.000 5.95 0.00 0.00 4.79
91 92 3.775202 CTCGTCAGTGAAGTATGAAGGG 58.225 50.000 5.95 0.00 0.00 3.95
92 93 3.182967 GCTCGTCAGTGAAGTATGAAGG 58.817 50.000 5.95 0.00 0.00 3.46
93 94 3.119316 AGGCTCGTCAGTGAAGTATGAAG 60.119 47.826 5.95 0.00 0.00 3.02
94 95 2.826128 AGGCTCGTCAGTGAAGTATGAA 59.174 45.455 5.95 0.00 0.00 2.57
95 96 2.164422 CAGGCTCGTCAGTGAAGTATGA 59.836 50.000 5.95 0.00 0.00 2.15
96 97 2.094494 ACAGGCTCGTCAGTGAAGTATG 60.094 50.000 5.95 4.11 0.00 2.39
97 98 2.094494 CACAGGCTCGTCAGTGAAGTAT 60.094 50.000 5.95 0.00 33.99 2.12
98 99 1.269723 CACAGGCTCGTCAGTGAAGTA 59.730 52.381 5.95 0.00 33.99 2.24
99 100 0.032678 CACAGGCTCGTCAGTGAAGT 59.967 55.000 5.95 0.00 33.99 3.01
100 101 0.668706 CCACAGGCTCGTCAGTGAAG 60.669 60.000 0.00 0.00 33.99 3.02
101 102 1.112916 TCCACAGGCTCGTCAGTGAA 61.113 55.000 0.00 0.00 33.99 3.18
106 107 0.955428 GCAAATCCACAGGCTCGTCA 60.955 55.000 0.00 0.00 0.00 4.35
115 116 0.846427 AGAGGGGAGGCAAATCCACA 60.846 55.000 6.84 0.00 46.03 4.17
155 156 3.090532 ATTCTCCTCCCCCGCCAC 61.091 66.667 0.00 0.00 0.00 5.01
160 161 1.527370 CAACGGATTCTCCTCCCCC 59.473 63.158 0.00 0.00 33.30 5.40
176 178 5.043737 ACTACTAACCAAAGTGAAGGCAA 57.956 39.130 0.00 0.00 0.00 4.52
211 213 2.470821 CCGCACCTACGAGGATTAAAG 58.529 52.381 7.76 0.00 37.67 1.85
234 238 2.809706 CAATGCCATCCGCCCAAG 59.190 61.111 0.00 0.00 36.24 3.61
239 243 0.248784 GAAGAAGCAATGCCATCCGC 60.249 55.000 0.00 0.00 38.31 5.54
248 252 6.705863 AGACAAACTTGAAGAAGAAGCAAT 57.294 33.333 0.00 0.00 32.98 3.56
249 253 6.404734 GGAAGACAAACTTGAAGAAGAAGCAA 60.405 38.462 0.00 0.00 39.13 3.91
250 254 5.066505 GGAAGACAAACTTGAAGAAGAAGCA 59.933 40.000 0.00 0.00 39.13 3.91
262 266 3.194005 TGAAGCTCGGAAGACAAACTT 57.806 42.857 0.00 0.00 42.03 2.66
276 281 0.765510 AACGAAGGAGGGTTGAAGCT 59.234 50.000 0.00 0.00 0.00 3.74
277 282 1.266989 CAAACGAAGGAGGGTTGAAGC 59.733 52.381 0.00 0.00 0.00 3.86
278 283 2.548480 GACAAACGAAGGAGGGTTGAAG 59.452 50.000 0.00 0.00 0.00 3.02
279 284 2.171870 AGACAAACGAAGGAGGGTTGAA 59.828 45.455 0.00 0.00 0.00 2.69
281 286 1.873591 CAGACAAACGAAGGAGGGTTG 59.126 52.381 0.00 0.00 0.00 3.77
283 288 0.396811 CCAGACAAACGAAGGAGGGT 59.603 55.000 0.00 0.00 0.00 4.34
286 291 1.269621 ACGTCCAGACAAACGAAGGAG 60.270 52.381 1.52 0.00 41.29 3.69
289 294 3.009301 ACTACGTCCAGACAAACGAAG 57.991 47.619 0.00 0.00 41.29 3.79
308 317 1.986698 TTACGCTTGAGCTCCGTTAC 58.013 50.000 19.23 1.21 39.32 2.50
320 330 3.010420 GAGAAGGCAGGAATTTACGCTT 58.990 45.455 0.00 0.00 0.00 4.68
321 331 2.633488 GAGAAGGCAGGAATTTACGCT 58.367 47.619 0.00 0.00 0.00 5.07
327 337 1.006400 CCCAAGGAGAAGGCAGGAATT 59.994 52.381 0.00 0.00 0.00 2.17
338 348 4.649705 TCGCCACCCCCAAGGAGA 62.650 66.667 0.00 0.00 39.89 3.71
349 359 3.994392 TGAGAAAACACTAATCTCGCCAC 59.006 43.478 0.00 0.00 41.96 5.01
350 360 4.265904 TGAGAAAACACTAATCTCGCCA 57.734 40.909 0.00 0.00 41.96 5.69
352 362 6.036517 ACATGATGAGAAAACACTAATCTCGC 59.963 38.462 0.00 0.00 41.96 5.03
353 363 7.397194 CACATGATGAGAAAACACTAATCTCG 58.603 38.462 0.00 0.00 41.96 4.04
354 364 7.678218 GCCACATGATGAGAAAACACTAATCTC 60.678 40.741 0.00 0.00 39.98 2.75
355 365 6.094603 GCCACATGATGAGAAAACACTAATCT 59.905 38.462 0.00 0.00 31.05 2.40
357 367 5.163723 CGCCACATGATGAGAAAACACTAAT 60.164 40.000 0.00 0.00 0.00 1.73
359 369 3.684305 CGCCACATGATGAGAAAACACTA 59.316 43.478 0.00 0.00 0.00 2.74
360 370 2.485426 CGCCACATGATGAGAAAACACT 59.515 45.455 0.00 0.00 0.00 3.55
362 372 2.743664 CTCGCCACATGATGAGAAAACA 59.256 45.455 0.00 0.00 0.00 2.83
363 373 3.002791 TCTCGCCACATGATGAGAAAAC 58.997 45.455 0.00 0.00 34.72 2.43
364 374 3.333029 TCTCGCCACATGATGAGAAAA 57.667 42.857 0.00 0.00 34.72 2.29
371 381 2.019249 CACCAAATCTCGCCACATGAT 58.981 47.619 0.00 0.00 0.00 2.45
392 411 8.993424 ACCCTTATATAGATCTGAAACAGTTGT 58.007 33.333 5.18 0.00 32.61 3.32
411 430 3.501950 GTCGTCGTCGTTAAACCCTTAT 58.498 45.455 1.33 0.00 38.33 1.73
420 439 4.444024 CCGCGGTCGTCGTCGTTA 62.444 66.667 19.50 0.00 41.72 3.18
458 477 1.601903 GTTTCTTCGTGCATGTGTCCA 59.398 47.619 5.68 0.00 0.00 4.02
465 484 1.156736 CGGGAAGTTTCTTCGTGCAT 58.843 50.000 0.00 0.00 0.00 3.96
476 495 1.417890 CCTGATGATAGCCGGGAAGTT 59.582 52.381 2.18 0.00 0.00 2.66
477 496 1.051812 CCTGATGATAGCCGGGAAGT 58.948 55.000 2.18 0.00 0.00 3.01
484 503 3.737850 CTTGACCTTCCTGATGATAGCC 58.262 50.000 0.00 0.00 0.00 3.93
488 507 1.134280 CGGCTTGACCTTCCTGATGAT 60.134 52.381 0.00 0.00 35.61 2.45
493 512 4.285851 GTCGGCTTGACCTTCCTG 57.714 61.111 0.00 0.00 42.04 3.86
514 533 3.366739 CTGTCGTCGCCCCCTTACC 62.367 68.421 0.00 0.00 0.00 2.85
530 549 2.052237 GTTGCCAACGTGTCGCTG 60.052 61.111 0.00 0.00 0.00 5.18
545 564 3.994392 CACTACTGCCATTAGAACGTGTT 59.006 43.478 0.00 0.00 0.00 3.32
546 565 3.257375 TCACTACTGCCATTAGAACGTGT 59.743 43.478 0.00 0.00 0.00 4.49
548 567 3.368116 GGTCACTACTGCCATTAGAACGT 60.368 47.826 0.00 0.00 0.00 3.99
550 569 3.187700 CGGTCACTACTGCCATTAGAAC 58.812 50.000 0.00 0.00 0.00 3.01
555 574 1.671850 CGAACGGTCACTACTGCCATT 60.672 52.381 0.00 0.00 35.17 3.16
556 575 0.108804 CGAACGGTCACTACTGCCAT 60.109 55.000 0.00 0.00 35.17 4.40
557 576 1.174078 TCGAACGGTCACTACTGCCA 61.174 55.000 0.00 0.00 35.17 4.92
558 577 0.172803 ATCGAACGGTCACTACTGCC 59.827 55.000 0.00 0.00 35.17 4.85
559 578 1.269166 CATCGAACGGTCACTACTGC 58.731 55.000 0.00 0.00 35.17 4.40
560 579 1.201647 ACCATCGAACGGTCACTACTG 59.798 52.381 0.00 0.00 38.04 2.74
561 580 1.542492 ACCATCGAACGGTCACTACT 58.458 50.000 0.00 0.00 27.30 2.57
575 594 7.721286 ATTACATTGAGATTTCGAGACCATC 57.279 36.000 0.00 0.00 0.00 3.51
576 595 8.511604 AAATTACATTGAGATTTCGAGACCAT 57.488 30.769 0.00 0.00 0.00 3.55
577 596 7.921786 AAATTACATTGAGATTTCGAGACCA 57.078 32.000 0.00 0.00 0.00 4.02
598 617 9.158233 CCAAAGCATCTCAAACATGATAAAAAT 57.842 29.630 0.00 0.00 0.00 1.82
599 618 8.149647 ACCAAAGCATCTCAAACATGATAAAAA 58.850 29.630 0.00 0.00 0.00 1.94
600 619 7.669427 ACCAAAGCATCTCAAACATGATAAAA 58.331 30.769 0.00 0.00 0.00 1.52
601 620 7.230849 ACCAAAGCATCTCAAACATGATAAA 57.769 32.000 0.00 0.00 0.00 1.40
602 621 6.127647 GGACCAAAGCATCTCAAACATGATAA 60.128 38.462 0.00 0.00 0.00 1.75
603 622 5.357878 GGACCAAAGCATCTCAAACATGATA 59.642 40.000 0.00 0.00 0.00 2.15
604 623 4.159135 GGACCAAAGCATCTCAAACATGAT 59.841 41.667 0.00 0.00 0.00 2.45
605 624 3.507233 GGACCAAAGCATCTCAAACATGA 59.493 43.478 0.00 0.00 0.00 3.07
606 625 3.367703 GGGACCAAAGCATCTCAAACATG 60.368 47.826 0.00 0.00 0.00 3.21
607 626 2.827921 GGGACCAAAGCATCTCAAACAT 59.172 45.455 0.00 0.00 0.00 2.71
608 627 2.238521 GGGACCAAAGCATCTCAAACA 58.761 47.619 0.00 0.00 0.00 2.83
609 628 1.200020 CGGGACCAAAGCATCTCAAAC 59.800 52.381 0.00 0.00 0.00 2.93
610 629 1.533625 CGGGACCAAAGCATCTCAAA 58.466 50.000 0.00 0.00 0.00 2.69
611 630 0.960364 GCGGGACCAAAGCATCTCAA 60.960 55.000 0.00 0.00 0.00 3.02
612 631 1.377202 GCGGGACCAAAGCATCTCA 60.377 57.895 0.00 0.00 0.00 3.27
613 632 1.377202 TGCGGGACCAAAGCATCTC 60.377 57.895 4.67 0.00 35.81 2.75
614 633 1.675641 GTGCGGGACCAAAGCATCT 60.676 57.895 10.93 0.00 43.17 2.90
615 634 1.315257 ATGTGCGGGACCAAAGCATC 61.315 55.000 10.93 6.63 43.17 3.91
616 635 1.304381 ATGTGCGGGACCAAAGCAT 60.304 52.632 10.93 0.00 43.17 3.79
617 636 2.115052 ATGTGCGGGACCAAAGCA 59.885 55.556 4.67 4.67 38.71 3.91
618 637 1.315257 ATCATGTGCGGGACCAAAGC 61.315 55.000 0.00 0.00 0.00 3.51
619 638 1.942657 CTATCATGTGCGGGACCAAAG 59.057 52.381 0.00 0.00 0.00 2.77
620 639 2.016604 GCTATCATGTGCGGGACCAAA 61.017 52.381 0.00 0.00 0.00 3.28
621 640 0.463654 GCTATCATGTGCGGGACCAA 60.464 55.000 0.00 0.00 0.00 3.67
622 641 1.146041 GCTATCATGTGCGGGACCA 59.854 57.895 0.00 0.00 0.00 4.02
623 642 1.598130 GGCTATCATGTGCGGGACC 60.598 63.158 0.00 0.00 0.00 4.46
624 643 1.598130 GGGCTATCATGTGCGGGAC 60.598 63.158 0.00 0.00 0.00 4.46
625 644 2.818169 GGGGCTATCATGTGCGGGA 61.818 63.158 0.00 0.00 0.00 5.14
626 645 2.281761 GGGGCTATCATGTGCGGG 60.282 66.667 0.00 0.00 0.00 6.13
627 646 2.281761 GGGGGCTATCATGTGCGG 60.282 66.667 0.00 0.00 0.00 5.69
628 647 0.751277 TTTGGGGGCTATCATGTGCG 60.751 55.000 0.00 0.00 0.00 5.34
629 648 0.746659 GTTTGGGGGCTATCATGTGC 59.253 55.000 0.00 0.00 0.00 4.57
630 649 2.026641 CAGTTTGGGGGCTATCATGTG 58.973 52.381 0.00 0.00 0.00 3.21
631 650 1.686115 GCAGTTTGGGGGCTATCATGT 60.686 52.381 0.00 0.00 0.00 3.21
632 651 1.035139 GCAGTTTGGGGGCTATCATG 58.965 55.000 0.00 0.00 0.00 3.07
633 652 0.630673 TGCAGTTTGGGGGCTATCAT 59.369 50.000 0.00 0.00 0.00 2.45
634 653 0.323360 GTGCAGTTTGGGGGCTATCA 60.323 55.000 0.00 0.00 0.00 2.15
635 654 1.037579 GGTGCAGTTTGGGGGCTATC 61.038 60.000 0.00 0.00 0.00 2.08
636 655 1.000359 GGTGCAGTTTGGGGGCTAT 60.000 57.895 0.00 0.00 0.00 2.97
637 656 2.424842 CTGGTGCAGTTTGGGGGCTA 62.425 60.000 0.00 0.00 0.00 3.93
638 657 3.815407 CTGGTGCAGTTTGGGGGCT 62.815 63.158 0.00 0.00 0.00 5.19
639 658 3.305516 CTGGTGCAGTTTGGGGGC 61.306 66.667 0.00 0.00 0.00 5.80
640 659 3.305516 GCTGGTGCAGTTTGGGGG 61.306 66.667 0.00 0.00 39.41 5.40
641 660 3.305516 GGCTGGTGCAGTTTGGGG 61.306 66.667 0.00 0.00 41.91 4.96
642 661 3.673484 CGGCTGGTGCAGTTTGGG 61.673 66.667 0.00 0.00 41.91 4.12
643 662 4.347453 GCGGCTGGTGCAGTTTGG 62.347 66.667 0.00 0.00 41.91 3.28
644 663 4.347453 GGCGGCTGGTGCAGTTTG 62.347 66.667 0.00 0.00 41.91 2.93
660 679 2.438434 CAGGTAAAGCCCTGGCGG 60.438 66.667 1.84 0.00 46.89 6.13
661 680 1.745489 GTCAGGTAAAGCCCTGGCG 60.745 63.158 7.33 0.00 46.48 5.69
665 684 1.276622 ATGTCGTCAGGTAAAGCCCT 58.723 50.000 0.00 0.00 38.26 5.19
666 685 1.737793 CAATGTCGTCAGGTAAAGCCC 59.262 52.381 0.00 0.00 38.26 5.19
667 686 2.159627 CACAATGTCGTCAGGTAAAGCC 59.840 50.000 0.00 0.00 37.58 4.35
668 687 2.806244 ACACAATGTCGTCAGGTAAAGC 59.194 45.455 0.00 0.00 0.00 3.51
669 688 4.647291 GACACAATGTCGTCAGGTAAAG 57.353 45.455 9.82 0.00 37.67 1.85
680 699 1.868997 CTGCCCACGACACAATGTC 59.131 57.895 0.00 0.00 43.65 3.06
681 700 2.260869 GCTGCCCACGACACAATGT 61.261 57.895 0.00 0.00 0.00 2.71
682 701 1.588824 ATGCTGCCCACGACACAATG 61.589 55.000 0.00 0.00 0.00 2.82
683 702 1.303561 ATGCTGCCCACGACACAAT 60.304 52.632 0.00 0.00 0.00 2.71
684 703 2.112928 ATGCTGCCCACGACACAA 59.887 55.556 0.00 0.00 0.00 3.33
685 704 2.669229 CATGCTGCCCACGACACA 60.669 61.111 0.00 0.00 0.00 3.72
686 705 3.434319 CCATGCTGCCCACGACAC 61.434 66.667 0.00 0.00 0.00 3.67
687 706 4.720902 CCCATGCTGCCCACGACA 62.721 66.667 0.00 0.00 0.00 4.35
688 707 3.704231 ATCCCATGCTGCCCACGAC 62.704 63.158 0.00 0.00 0.00 4.34
689 708 3.410628 ATCCCATGCTGCCCACGA 61.411 61.111 0.00 0.00 0.00 4.35
690 709 3.214123 CATCCCATGCTGCCCACG 61.214 66.667 0.00 0.00 0.00 4.94
691 710 2.836360 CCATCCCATGCTGCCCAC 60.836 66.667 0.00 0.00 0.00 4.61
692 711 3.022497 TCCATCCCATGCTGCCCA 61.022 61.111 0.00 0.00 0.00 5.36
693 712 2.203451 CTCCATCCCATGCTGCCC 60.203 66.667 0.00 0.00 0.00 5.36
694 713 2.203451 CCTCCATCCCATGCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
695 714 2.203451 CCCTCCATCCCATGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
696 715 1.152819 CACCCTCCATCCCATGCTG 60.153 63.158 0.00 0.00 0.00 4.41
697 716 2.389449 CCACCCTCCATCCCATGCT 61.389 63.158 0.00 0.00 0.00 3.79
698 717 2.196776 CCACCCTCCATCCCATGC 59.803 66.667 0.00 0.00 0.00 4.06
699 718 2.196776 GCCACCCTCCATCCCATG 59.803 66.667 0.00 0.00 0.00 3.66
700 719 3.492353 CGCCACCCTCCATCCCAT 61.492 66.667 0.00 0.00 0.00 4.00
708 727 4.162690 ATCTTCGCCGCCACCCTC 62.163 66.667 0.00 0.00 0.00 4.30
709 728 4.473520 CATCTTCGCCGCCACCCT 62.474 66.667 0.00 0.00 0.00 4.34
710 729 4.467084 TCATCTTCGCCGCCACCC 62.467 66.667 0.00 0.00 0.00 4.61
711 730 3.195698 GTCATCTTCGCCGCCACC 61.196 66.667 0.00 0.00 0.00 4.61
712 731 2.125512 AGTCATCTTCGCCGCCAC 60.126 61.111 0.00 0.00 0.00 5.01
713 732 2.125552 CAGTCATCTTCGCCGCCA 60.126 61.111 0.00 0.00 0.00 5.69
714 733 2.629050 TAGCAGTCATCTTCGCCGCC 62.629 60.000 0.00 0.00 0.00 6.13
715 734 1.211818 CTAGCAGTCATCTTCGCCGC 61.212 60.000 0.00 0.00 0.00 6.53
716 735 0.596083 CCTAGCAGTCATCTTCGCCG 60.596 60.000 0.00 0.00 0.00 6.46
717 736 0.878086 GCCTAGCAGTCATCTTCGCC 60.878 60.000 0.00 0.00 0.00 5.54
718 737 0.103937 AGCCTAGCAGTCATCTTCGC 59.896 55.000 0.00 0.00 0.00 4.70
719 738 2.468831 GAAGCCTAGCAGTCATCTTCG 58.531 52.381 0.00 0.00 0.00 3.79
720 739 2.801342 CGGAAGCCTAGCAGTCATCTTC 60.801 54.545 0.00 0.00 0.00 2.87
721 740 1.137872 CGGAAGCCTAGCAGTCATCTT 59.862 52.381 0.00 0.00 0.00 2.40
722 741 0.749649 CGGAAGCCTAGCAGTCATCT 59.250 55.000 0.00 0.00 0.00 2.90
723 742 3.280920 CGGAAGCCTAGCAGTCATC 57.719 57.895 0.00 0.00 0.00 2.92
766 785 4.802051 TTCCTGGCTCGCCCATGC 62.802 66.667 5.33 0.00 44.33 4.06
767 786 1.039233 AAATTCCTGGCTCGCCCATG 61.039 55.000 5.33 0.00 44.33 3.66
768 787 1.039233 CAAATTCCTGGCTCGCCCAT 61.039 55.000 5.33 0.00 44.33 4.00
769 788 1.678635 CAAATTCCTGGCTCGCCCA 60.679 57.895 5.33 0.00 42.79 5.36
770 789 1.657751 GACAAATTCCTGGCTCGCCC 61.658 60.000 5.33 0.00 34.56 6.13
771 790 1.657751 GGACAAATTCCTGGCTCGCC 61.658 60.000 0.00 0.00 41.95 5.54
772 791 1.803289 GGACAAATTCCTGGCTCGC 59.197 57.895 0.00 0.00 41.95 5.03
773 792 0.673644 ACGGACAAATTCCTGGCTCG 60.674 55.000 0.00 0.00 43.25 5.03
774 793 0.804989 CACGGACAAATTCCTGGCTC 59.195 55.000 0.00 0.00 43.25 4.70
775 794 0.400213 TCACGGACAAATTCCTGGCT 59.600 50.000 0.00 0.00 43.25 4.75
776 795 0.804989 CTCACGGACAAATTCCTGGC 59.195 55.000 0.00 0.00 43.25 4.85
777 796 2.028112 TCTCTCACGGACAAATTCCTGG 60.028 50.000 0.00 0.00 43.25 4.45
778 797 3.257393 CTCTCTCACGGACAAATTCCTG 58.743 50.000 0.00 0.00 43.25 3.86
779 798 2.234908 CCTCTCTCACGGACAAATTCCT 59.765 50.000 0.00 0.00 43.25 3.36
835 854 3.861113 CCGTCCGATTTTCAGATACGAAA 59.139 43.478 0.00 0.00 33.12 3.46
861 880 3.569701 GGTTGATTTTTGGTGAGCTCTCA 59.430 43.478 16.19 10.59 37.24 3.27
867 886 7.264947 ACAAGTTTAGGTTGATTTTTGGTGAG 58.735 34.615 0.00 0.00 0.00 3.51
873 892 8.527810 TCACTGAACAAGTTTAGGTTGATTTTT 58.472 29.630 9.17 0.00 36.83 1.94
883 902 7.953158 TCAGAGATTCACTGAACAAGTTTAG 57.047 36.000 10.85 3.50 40.70 1.85
884 903 8.150296 TGATCAGAGATTCACTGAACAAGTTTA 58.850 33.333 17.41 0.00 45.44 2.01
885 904 6.994496 TGATCAGAGATTCACTGAACAAGTTT 59.006 34.615 17.41 2.29 45.44 2.66
892 911 4.813750 TGCTGATCAGAGATTCACTGAA 57.186 40.909 27.04 2.38 45.44 3.02
923 942 2.437413 GGGCTTTAGGTTCAGGTTCTG 58.563 52.381 0.00 0.00 0.00 3.02
980 1002 4.202599 GGGTTGAGTTTAGGGTTTAAGGGA 60.203 45.833 0.00 0.00 0.00 4.20
981 1003 4.084287 GGGTTGAGTTTAGGGTTTAAGGG 58.916 47.826 0.00 0.00 0.00 3.95
1030 1052 0.254178 GGAGGAAGCCAAGCAGATGA 59.746 55.000 0.00 0.00 0.00 2.92
1033 1055 2.665000 CGGAGGAAGCCAAGCAGA 59.335 61.111 0.00 0.00 0.00 4.26
1086 1108 2.090606 AGGAGGGAGAGAGAATCAGCAT 60.091 50.000 0.00 0.00 37.82 3.79
1210 1232 2.203640 ACCCAGTCGCTGAGGTCA 60.204 61.111 8.20 0.00 32.41 4.02
1807 1856 4.436998 CTCCCACCACGACCTCGC 62.437 72.222 0.00 0.00 44.43 5.03
2067 2116 0.034059 ACCTCCTCTGCGTGACAAAG 59.966 55.000 0.00 0.00 0.00 2.77
2113 2162 1.859998 GCATCATCGTCGTCGTCATCA 60.860 52.381 1.33 0.00 38.33 3.07
2125 2177 4.348656 CTCCAAACTCAATTGCATCATCG 58.651 43.478 0.00 0.00 0.00 3.84
2335 2387 2.573915 AGAGAGACCATCCTCAAAACCC 59.426 50.000 0.00 0.00 35.68 4.11
2383 2435 5.997746 AGATTTCTTAGCTGCACTGTTAACA 59.002 36.000 8.28 8.28 0.00 2.41
2386 2438 5.551233 ACAGATTTCTTAGCTGCACTGTTA 58.449 37.500 1.02 0.00 34.42 2.41
2552 2604 9.915629 AAAACAAAGTACAACACATACAGAAAA 57.084 25.926 0.00 0.00 0.00 2.29
2901 3048 6.426937 ACCTGTGTACACTATGATGAAAACAC 59.573 38.462 25.60 0.00 34.66 3.32
2920 3067 3.354948 TCAAGGATCATGGAACCTGTG 57.645 47.619 0.00 7.69 35.03 3.66
3174 3322 8.579850 AACAAGATATATTTTCTTCACTGGCA 57.420 30.769 0.00 0.00 31.11 4.92
3397 3650 6.774673 TGGTATGGTTGAGAAAATAGACACA 58.225 36.000 0.00 0.00 0.00 3.72
4039 4323 6.721318 AGTCCTAACAAGGAAAGATATGCAA 58.279 36.000 0.00 0.00 40.06 4.08
4416 4713 5.677319 ATTCCTCCTGTCAGTTATCGAAA 57.323 39.130 0.00 0.00 0.00 3.46
4565 4863 6.065976 TCATCTCTCAATTTAGCTTTCCCA 57.934 37.500 0.00 0.00 0.00 4.37
4640 4938 1.530655 GGTGGTGGTTGGTGAAGGG 60.531 63.158 0.00 0.00 0.00 3.95
4686 4984 4.323417 CACAATACCTTTGTGCCTCAGTA 58.677 43.478 5.62 0.00 42.52 2.74
4849 5155 1.688735 AGCTGAGCTGTGTGACTGTTA 59.311 47.619 5.97 0.00 37.57 2.41
4878 5184 2.362077 AGTTGTTGGGCATGTTCTGTTC 59.638 45.455 0.00 0.00 0.00 3.18
5044 5360 3.256136 TGAACAATTCACTCATGCATGCA 59.744 39.130 25.04 25.04 34.08 3.96
5135 5451 6.016360 TGGTCAATTCCACTGATGTGTTTTAG 60.016 38.462 0.00 0.00 42.34 1.85
5213 5529 6.496338 AGTTAATTGGACGAATTCTTGACC 57.504 37.500 3.52 0.00 35.74 4.02
5236 5552 4.163458 AGGGATTAATCGGCAAGTGAACTA 59.837 41.667 9.32 0.00 0.00 2.24
5379 5695 5.427036 TTGTTGAGGAAATCGTTAACCAC 57.573 39.130 0.00 0.00 31.81 4.16
5592 5997 2.159114 GCACAAACACACCAAGTCCATT 60.159 45.455 0.00 0.00 0.00 3.16
5864 6277 9.646522 AAATATCAATACTCAAGCAGGGTATTT 57.353 29.630 10.67 2.77 34.99 1.40
5923 6336 8.816640 AACAATGGTGAATTACAAATTGAGAC 57.183 30.769 0.00 0.00 37.81 3.36
6020 6433 5.160641 GGGCACACAACAATAACACTAATG 58.839 41.667 0.00 0.00 0.00 1.90
6050 6463 1.153409 AGCCTGATCAGCAAGCTCG 60.153 57.895 17.76 2.89 40.18 5.03
7254 7672 8.719560 TTTATAATAACATGCGTAAGGACACA 57.280 30.769 0.00 0.00 44.26 3.72
7498 7916 0.737715 GCACTGGTGAAGGAGCTACG 60.738 60.000 4.79 0.00 0.00 3.51
7540 7961 5.764686 TCGATATGTCCATTGCTATTTTGCT 59.235 36.000 0.00 0.00 0.00 3.91
7576 7997 0.396435 ACACTTCTTCGGATGGTGCA 59.604 50.000 0.00 0.00 34.12 4.57
7665 8087 7.897575 AACTAGACACAAATTTGCAAAAACA 57.102 28.000 17.19 0.00 0.00 2.83
7734 8156 3.810310 TGGCTTTCCAAACATTCGTTT 57.190 38.095 0.00 0.00 46.38 3.60
7767 8189 5.869649 AAAACATTTCTACCTTGTGCCTT 57.130 34.783 0.00 0.00 0.00 4.35
7839 8301 8.506734 AATGACAACATTCCATGTAGATGGCTT 61.507 37.037 14.09 1.04 44.07 4.35
7963 8426 4.832248 ACGCAGATTCCTTATCTTTCACA 58.168 39.130 0.00 0.00 41.78 3.58
8258 8996 5.532406 AGACAACTTGTTATCAATGCACAGT 59.468 36.000 0.00 0.00 32.82 3.55
8295 9034 1.021390 GCCGTACTGCAAGCATGACT 61.021 55.000 4.19 0.00 37.60 3.41
8523 9263 7.186804 CGAACTGAAACTGAAAAAGAAGCTAA 58.813 34.615 0.00 0.00 0.00 3.09
8524 9264 6.238374 CCGAACTGAAACTGAAAAAGAAGCTA 60.238 38.462 0.00 0.00 0.00 3.32
8527 9267 4.735338 GCCGAACTGAAACTGAAAAAGAAG 59.265 41.667 0.00 0.00 0.00 2.85
8594 9334 8.478877 AGGGAGTACTATACTGAATTTGTGAAG 58.521 37.037 0.00 0.00 39.59 3.02
8632 9372 7.114754 AGATTCATCCATTTAAGAGACAAGCA 58.885 34.615 0.00 0.00 0.00 3.91
8718 9458 4.223032 TGTTCCTTTCATACTCCCTCTGTC 59.777 45.833 0.00 0.00 0.00 3.51
8720 9460 4.826274 TGTTCCTTTCATACTCCCTCTG 57.174 45.455 0.00 0.00 0.00 3.35
8721 9461 5.310857 ACTTTGTTCCTTTCATACTCCCTCT 59.689 40.000 0.00 0.00 0.00 3.69
8783 9523 7.584202 GCATATATGGGATCAGGAGTGGTATTT 60.584 40.741 14.51 0.00 0.00 1.40
8821 9561 1.468520 CAGGTTGCGTATTTGGGACTG 59.531 52.381 0.00 0.00 0.00 3.51
8833 9573 0.109319 GCCAAATGTACCAGGTTGCG 60.109 55.000 0.00 0.00 0.00 4.85
8841 9581 2.200373 AGGTGTCTGCCAAATGTACC 57.800 50.000 0.00 0.00 0.00 3.34
8879 9619 1.593196 TGCAAAAGGAGAGGTCAACG 58.407 50.000 0.00 0.00 0.00 4.10
8885 9625 1.398390 GCGTGTATGCAAAAGGAGAGG 59.602 52.381 0.00 0.00 34.15 3.69
8910 9650 2.682856 ACTGCATCAGTTCAACAAACGT 59.317 40.909 0.00 0.00 42.59 3.99
8928 9668 5.178797 AGAACTGGGACGAAATTCATACTG 58.821 41.667 0.00 0.00 0.00 2.74
8944 9684 8.338259 CAGACATCGGAAAATTTATAGAACTGG 58.662 37.037 0.00 0.00 0.00 4.00
8963 9703 4.387256 GCGAGGCTGATATTAACAGACATC 59.613 45.833 9.25 5.25 44.90 3.06
8980 9720 1.135575 CAAAGATTTGTCAGGCGAGGC 60.136 52.381 0.00 0.00 33.59 4.70
8981 9721 2.907910 CAAAGATTTGTCAGGCGAGG 57.092 50.000 0.00 0.00 33.59 4.63
9004 9744 8.996651 AATATAATGGAACTTAGGAAACTGGG 57.003 34.615 0.00 0.00 43.88 4.45
9014 9754 9.647918 TGGCCAATGTAAATATAATGGAACTTA 57.352 29.630 0.61 0.00 0.00 2.24
9042 9782 2.107366 CCCCGCTGTTCCCAAATAAAT 58.893 47.619 0.00 0.00 0.00 1.40
9052 9792 0.034337 TAACACACTCCCCGCTGTTC 59.966 55.000 0.00 0.00 0.00 3.18
9053 9793 0.690762 ATAACACACTCCCCGCTGTT 59.309 50.000 0.00 0.00 0.00 3.16
9054 9794 0.690762 AATAACACACTCCCCGCTGT 59.309 50.000 0.00 0.00 0.00 4.40
9055 9795 1.369625 GAATAACACACTCCCCGCTG 58.630 55.000 0.00 0.00 0.00 5.18
9056 9796 0.108329 CGAATAACACACTCCCCGCT 60.108 55.000 0.00 0.00 0.00 5.52
9057 9797 0.108520 TCGAATAACACACTCCCCGC 60.109 55.000 0.00 0.00 0.00 6.13
9058 9798 2.596904 ATCGAATAACACACTCCCCG 57.403 50.000 0.00 0.00 0.00 5.73
9059 9799 2.943033 CCAATCGAATAACACACTCCCC 59.057 50.000 0.00 0.00 0.00 4.81
9072 9812 5.427378 TCTCTAAATGATGTGCCAATCGAA 58.573 37.500 0.00 0.00 0.00 3.71
9186 10334 1.136085 CGCCACAATCACAAGGTTACG 60.136 52.381 0.00 0.00 0.00 3.18
9232 10380 2.556144 ACAAGTTGCTGCTCATCTCA 57.444 45.000 1.81 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.