Multiple sequence alignment - TraesCS7D01G326800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G326800 chr7D 100.000 2751 0 0 2300 5050 417358084 417355334 0.000000e+00 5081.0
1 TraesCS7D01G326800 chr7D 100.000 1820 0 0 1 1820 417360383 417358564 0.000000e+00 3362.0
2 TraesCS7D01G326800 chr7D 96.378 497 15 2 4348 4841 527915095 527915591 0.000000e+00 815.0
3 TraesCS7D01G326800 chr7D 87.276 503 52 10 4349 4841 568821959 568822459 9.490000e-157 564.0
4 TraesCS7D01G326800 chr7D 91.667 180 10 2 414 593 54216750 54216576 1.400000e-60 244.0
5 TraesCS7D01G326800 chr7D 100.000 30 0 0 2357 2386 631455768 631455797 7.060000e-04 56.5
6 TraesCS7D01G326800 chr7B 93.691 1997 59 27 2304 4242 433064704 433062717 0.000000e+00 2928.0
7 TraesCS7D01G326800 chr7B 94.881 1133 44 7 694 1820 433065854 433064730 0.000000e+00 1759.0
8 TraesCS7D01G326800 chr7B 87.520 625 38 8 1 593 710426387 710427003 0.000000e+00 686.0
9 TraesCS7D01G326800 chr7B 92.417 211 15 1 4840 5050 618502743 618502534 2.960000e-77 300.0
10 TraesCS7D01G326800 chr7B 86.087 115 15 1 4238 4352 218968957 218969070 6.870000e-24 122.0
11 TraesCS7D01G326800 chr7B 92.593 81 3 1 602 682 433066228 433066151 4.130000e-21 113.0
12 TraesCS7D01G326800 chr7A 90.791 1998 66 45 2301 4213 482218445 482216481 0.000000e+00 2562.0
13 TraesCS7D01G326800 chr7A 92.508 1228 59 14 605 1820 482219675 482218469 0.000000e+00 1727.0
14 TraesCS7D01G326800 chr1D 96.443 506 14 3 4339 4841 476899820 476899316 0.000000e+00 832.0
15 TraesCS7D01G326800 chr1D 84.756 164 25 0 2824 2987 407160926 407160763 1.120000e-36 165.0
16 TraesCS7D01G326800 chr1D 87.826 115 10 3 4236 4348 73149031 73149143 1.140000e-26 132.0
17 TraesCS7D01G326800 chr2D 96.200 500 16 2 4349 4845 635162449 635162948 0.000000e+00 815.0
18 TraesCS7D01G326800 chr2D 95.322 513 20 3 4332 4841 6216800 6216289 0.000000e+00 811.0
19 TraesCS7D01G326800 chr2D 96.154 494 18 1 4349 4841 56096744 56096251 0.000000e+00 806.0
20 TraesCS7D01G326800 chr2D 93.365 211 14 0 4840 5050 152095406 152095616 3.800000e-81 313.0
21 TraesCS7D01G326800 chr6D 96.016 502 15 4 4344 4841 388356964 388356464 0.000000e+00 811.0
22 TraesCS7D01G326800 chr6D 89.623 106 11 0 4243 4348 396914980 396915085 8.820000e-28 135.0
23 TraesCS7D01G326800 chr3D 96.162 495 14 4 4349 4840 28504214 28503722 0.000000e+00 804.0
24 TraesCS7D01G326800 chr3D 87.156 109 14 0 4243 4351 435290815 435290707 1.910000e-24 124.0
25 TraesCS7D01G326800 chr4D 95.054 465 20 2 4378 4839 463690581 463691045 0.000000e+00 728.0
26 TraesCS7D01G326800 chr2B 88.498 626 31 16 7 599 182262812 182262195 0.000000e+00 719.0
27 TraesCS7D01G326800 chr2B 88.679 106 12 0 4243 4348 461131108 461131213 4.100000e-26 130.0
28 TraesCS7D01G326800 chr2B 86.607 112 11 1 4237 4348 366976881 366976988 2.470000e-23 121.0
29 TraesCS7D01G326800 chr5B 88.264 622 33 10 7 596 19115285 19114672 0.000000e+00 708.0
30 TraesCS7D01G326800 chr5B 89.302 430 29 5 175 593 446559941 446559518 1.610000e-144 523.0
31 TraesCS7D01G326800 chr5B 91.509 106 9 0 4243 4348 346309452 346309557 4.070000e-31 147.0
32 TraesCS7D01G326800 chr5B 89.744 78 6 2 107 182 446560032 446559955 1.160000e-16 99.0
33 TraesCS7D01G326800 chr5B 79.798 99 16 4 481 578 503794405 503794500 9.070000e-08 69.4
34 TraesCS7D01G326800 chr5B 78.182 110 20 4 2872 2979 642307161 642307268 3.260000e-07 67.6
35 TraesCS7D01G326800 chr1A 85.086 637 31 15 1 597 512891815 512891203 4.350000e-165 592.0
36 TraesCS7D01G326800 chr1A 83.537 164 27 0 2824 2987 502805745 502805582 2.430000e-33 154.0
37 TraesCS7D01G326800 chr1A 88.235 119 10 4 4236 4352 579737389 579737505 6.820000e-29 139.0
38 TraesCS7D01G326800 chr1A 87.719 114 14 0 4238 4351 578331019 578330906 3.170000e-27 134.0
39 TraesCS7D01G326800 chr4A 81.931 404 38 10 119 492 718107312 718107710 4.910000e-80 309.0
40 TraesCS7D01G326800 chr4A 81.436 404 40 13 119 492 718206555 718206953 1.060000e-76 298.0
41 TraesCS7D01G326800 chr1B 84.756 164 25 0 2824 2987 547523969 547523806 1.120000e-36 165.0
42 TraesCS7D01G326800 chr1B 85.294 136 18 2 280 415 653801981 653802114 6.820000e-29 139.0
43 TraesCS7D01G326800 chr1B 84.127 126 18 2 65 189 653797861 653797985 2.470000e-23 121.0
44 TraesCS7D01G326800 chr3A 100.000 36 0 0 2944 2979 727366038 727366073 3.260000e-07 67.6
45 TraesCS7D01G326800 chr2A 100.000 36 0 0 2944 2979 605311597 605311632 3.260000e-07 67.6
46 TraesCS7D01G326800 chr4B 95.122 41 0 2 2939 2977 86359948 86359988 4.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G326800 chr7D 417355334 417360383 5049 True 4221.5 5081 100.000000 1 5050 2 chr7D.!!$R2 5049
1 TraesCS7D01G326800 chr7D 568821959 568822459 500 False 564.0 564 87.276000 4349 4841 1 chr7D.!!$F2 492
2 TraesCS7D01G326800 chr7B 433062717 433066228 3511 True 1600.0 2928 93.721667 602 4242 3 chr7B.!!$R2 3640
3 TraesCS7D01G326800 chr7B 710426387 710427003 616 False 686.0 686 87.520000 1 593 1 chr7B.!!$F2 592
4 TraesCS7D01G326800 chr7A 482216481 482219675 3194 True 2144.5 2562 91.649500 605 4213 2 chr7A.!!$R1 3608
5 TraesCS7D01G326800 chr1D 476899316 476899820 504 True 832.0 832 96.443000 4339 4841 1 chr1D.!!$R2 502
6 TraesCS7D01G326800 chr2D 6216289 6216800 511 True 811.0 811 95.322000 4332 4841 1 chr2D.!!$R1 509
7 TraesCS7D01G326800 chr6D 388356464 388356964 500 True 811.0 811 96.016000 4344 4841 1 chr6D.!!$R1 497
8 TraesCS7D01G326800 chr2B 182262195 182262812 617 True 719.0 719 88.498000 7 599 1 chr2B.!!$R1 592
9 TraesCS7D01G326800 chr5B 19114672 19115285 613 True 708.0 708 88.264000 7 596 1 chr5B.!!$R1 589
10 TraesCS7D01G326800 chr5B 446559518 446560032 514 True 311.0 523 89.523000 107 593 2 chr5B.!!$R2 486
11 TraesCS7D01G326800 chr1A 512891203 512891815 612 True 592.0 592 85.086000 1 597 1 chr1A.!!$R2 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.034198 TGAACGGTCCGAGCAAATCA 59.966 50.0 20.51 9.08 0.00 2.57 F
954 1289 0.119155 TCACACCCTCCATTCCCTCT 59.881 55.0 0.00 0.00 0.00 3.69 F
1729 2076 0.452585 AAGCTACGAGAAGAGCGGAC 59.547 55.0 0.00 0.00 43.72 4.79 F
2478 2825 0.251354 GCAGTGGCTGATCTTCTCCA 59.749 55.0 0.00 0.00 36.96 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 1820 0.031994 GCGCATGGTTTTGACCAAGT 59.968 50.0 0.3 0.0 43.83 3.16 R
2301 2648 0.534203 GGACTTTCCAGCCGAACACA 60.534 55.0 0.0 0.0 36.28 3.72 R
3044 3432 0.595095 CCAACAGGAACAGAAGCAGC 59.405 55.0 0.0 0.0 0.00 5.25 R
4260 4721 0.114954 ATTTGGCTCCCACCACACAT 59.885 50.0 0.0 0.0 40.19 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.670811 GACCCATGGTTGTAGCATTCG 59.329 52.381 11.73 0.00 35.25 3.34
63 64 0.528684 CCGCCGTGCAAAAAGGAAAA 60.529 50.000 0.00 0.00 0.00 2.29
89 90 0.034198 TGAACGGTCCGAGCAAATCA 59.966 50.000 20.51 9.08 0.00 2.57
92 93 0.949105 ACGGTCCGAGCAAATCACAC 60.949 55.000 20.51 0.00 0.00 3.82
257 282 0.176680 CTAGTGCGTCAATGGGCTCT 59.823 55.000 6.90 6.90 36.93 4.09
492 536 0.320697 GTGGGGCGACTAGTCAAACT 59.679 55.000 22.37 0.00 0.00 2.66
715 1044 0.385390 AAGCAAACAAACTCCCTGCG 59.615 50.000 0.00 0.00 38.07 5.18
798 1127 2.379634 CCACGATTCGCGCTGTTCA 61.380 57.895 5.56 0.00 46.04 3.18
802 1136 0.314578 CGATTCGCGCTGTTCACATC 60.315 55.000 5.56 0.00 0.00 3.06
949 1284 0.179000 ATCGCTCACACCCTCCATTC 59.821 55.000 0.00 0.00 0.00 2.67
954 1289 0.119155 TCACACCCTCCATTCCCTCT 59.881 55.000 0.00 0.00 0.00 3.69
975 1310 1.339055 TGCTTCTTGTAGCTTGCCGAT 60.339 47.619 0.00 0.00 41.76 4.18
1005 1340 2.672908 CACTCTCTGGCCATGGCA 59.327 61.111 36.56 21.67 44.11 4.92
1116 1451 2.097038 CAAGAAGCCTCCTCGTGCG 61.097 63.158 0.00 0.00 0.00 5.34
1137 1472 2.584694 GCTAGCTCTCGGCACAGC 60.585 66.667 7.70 0.00 44.79 4.40
1138 1473 2.888111 CTAGCTCTCGGCACAGCA 59.112 61.111 0.00 0.00 44.79 4.41
1139 1474 1.226916 CTAGCTCTCGGCACAGCAG 60.227 63.158 0.00 0.00 44.79 4.24
1140 1475 2.625973 CTAGCTCTCGGCACAGCAGG 62.626 65.000 0.00 0.00 44.79 4.85
1142 1477 3.699894 CTCTCGGCACAGCAGGGT 61.700 66.667 0.00 0.00 0.00 4.34
1143 1478 3.655810 CTCTCGGCACAGCAGGGTC 62.656 68.421 0.00 0.00 0.00 4.46
1467 1812 2.227388 CCTCGTGTTCCAAGTACGTACT 59.773 50.000 22.45 22.45 38.80 2.73
1469 1814 2.096268 TCGTGTTCCAAGTACGTACTCG 60.096 50.000 27.51 22.63 43.34 4.18
1474 1819 2.153645 TCCAAGTACGTACTCGCTTGA 58.846 47.619 27.51 16.09 38.47 3.02
1475 1820 2.553602 TCCAAGTACGTACTCGCTTGAA 59.446 45.455 27.51 4.26 38.47 2.69
1480 1825 1.779569 ACGTACTCGCTTGAACTTGG 58.220 50.000 0.00 0.00 41.18 3.61
1512 1857 1.665679 CGCGTGCTTATGTGATTCCTT 59.334 47.619 0.00 0.00 0.00 3.36
1559 1905 7.878127 GCTACCAGTTATTGACACCACATATAT 59.122 37.037 0.00 0.00 0.00 0.86
1729 2076 0.452585 AAGCTACGAGAAGAGCGGAC 59.547 55.000 0.00 0.00 43.72 4.79
1730 2077 1.297745 GCTACGAGAAGAGCGGACG 60.298 63.158 0.00 0.00 0.00 4.79
1733 2080 1.088340 TACGAGAAGAGCGGACGGAG 61.088 60.000 0.00 0.00 0.00 4.63
2391 2738 4.402528 CCAACGGCCGATGGTGGA 62.403 66.667 38.31 0.00 33.98 4.02
2478 2825 0.251354 GCAGTGGCTGATCTTCTCCA 59.749 55.000 0.00 0.00 36.96 3.86
2479 2826 1.339438 GCAGTGGCTGATCTTCTCCAA 60.339 52.381 0.00 0.00 36.96 3.53
2586 2942 1.549203 ACGTTACGTATCACACCCCT 58.451 50.000 9.22 0.00 38.73 4.79
2617 2973 4.938226 CCCAAACAGTATTTCTCTCTGGTC 59.062 45.833 0.00 0.00 34.02 4.02
2650 3006 2.827642 GAGAGCCAGCATGCACCC 60.828 66.667 21.98 6.93 31.97 4.61
2740 3096 1.965643 GACAGCCCCACGGTATGTATA 59.034 52.381 0.00 0.00 33.05 1.47
2741 3097 1.690352 ACAGCCCCACGGTATGTATAC 59.310 52.381 0.00 0.00 31.65 1.47
2747 3115 2.734606 CCCACGGTATGTATACATTGCG 59.265 50.000 22.90 13.87 37.76 4.85
3044 3432 2.241190 TACCACGCACGCAACACAG 61.241 57.895 0.00 0.00 0.00 3.66
3070 3458 0.954452 CTGTTCCTGTTGGTTGCTCC 59.046 55.000 0.00 0.00 34.23 4.70
3236 3644 2.244651 GCATAAGGTAGGCGCACGG 61.245 63.158 10.83 0.00 0.00 4.94
3260 3668 6.183360 GGCCCGGTACATATACATACATACAT 60.183 42.308 0.00 0.00 32.40 2.29
3303 3721 0.727970 CAACACACCCGACGAAAACA 59.272 50.000 0.00 0.00 0.00 2.83
3489 3916 5.631119 AGCCTTACAGTAAACCAGAATGTT 58.369 37.500 0.00 0.00 0.00 2.71
3525 3960 2.430921 CGTCGGCACTCACTCCAC 60.431 66.667 0.00 0.00 0.00 4.02
3530 3965 1.375268 GGCACTCACTCCACTGCTC 60.375 63.158 0.00 0.00 0.00 4.26
3533 3968 0.964700 CACTCACTCCACTGCTCTCA 59.035 55.000 0.00 0.00 0.00 3.27
3534 3969 1.549620 CACTCACTCCACTGCTCTCAT 59.450 52.381 0.00 0.00 0.00 2.90
3535 3970 2.028294 CACTCACTCCACTGCTCTCATT 60.028 50.000 0.00 0.00 0.00 2.57
3537 3972 3.834813 ACTCACTCCACTGCTCTCATTTA 59.165 43.478 0.00 0.00 0.00 1.40
3538 3973 4.180057 CTCACTCCACTGCTCTCATTTAC 58.820 47.826 0.00 0.00 0.00 2.01
4031 4468 2.678934 TCCCTCCTCGACAACCCG 60.679 66.667 0.00 0.00 0.00 5.28
4034 4471 2.572284 CTCCTCGACAACCCGGAC 59.428 66.667 0.73 0.00 0.00 4.79
4051 4488 0.037326 GACCTCAAGTGCCGATGACA 60.037 55.000 0.00 0.00 0.00 3.58
4065 4502 3.058016 CCGATGACAACAGTTTTGCAGAT 60.058 43.478 0.00 0.00 0.00 2.90
4073 4531 5.126061 ACAACAGTTTTGCAGATTTCAGAGT 59.874 36.000 0.00 0.00 0.00 3.24
4074 4532 5.841957 ACAGTTTTGCAGATTTCAGAGTT 57.158 34.783 0.00 0.00 0.00 3.01
4075 4533 5.825507 ACAGTTTTGCAGATTTCAGAGTTC 58.174 37.500 0.00 0.00 0.00 3.01
4076 4534 5.591877 ACAGTTTTGCAGATTTCAGAGTTCT 59.408 36.000 0.00 0.00 0.00 3.01
4077 4535 5.913514 CAGTTTTGCAGATTTCAGAGTTCTG 59.086 40.000 2.69 2.69 45.08 3.02
4228 4689 3.883830 TTGTTATGGCCGAATTTGCAT 57.116 38.095 0.00 0.00 0.00 3.96
4235 4696 1.607767 GGCCGAATTTGCATTTGGTGT 60.608 47.619 7.93 0.00 43.80 4.16
4236 4697 2.142319 GCCGAATTTGCATTTGGTGTT 58.858 42.857 7.93 0.00 43.80 3.32
4256 4717 2.108178 TTTTTGACAACGCTAACGCC 57.892 45.000 0.00 0.00 45.53 5.68
4257 4718 0.308376 TTTTGACAACGCTAACGCCC 59.692 50.000 0.00 0.00 45.53 6.13
4258 4719 0.814410 TTTGACAACGCTAACGCCCA 60.814 50.000 0.00 0.00 45.53 5.36
4259 4720 1.500512 TTGACAACGCTAACGCCCAC 61.501 55.000 0.00 0.00 45.53 4.61
4260 4721 1.957186 GACAACGCTAACGCCCACA 60.957 57.895 0.00 0.00 45.53 4.17
4261 4722 1.296056 GACAACGCTAACGCCCACAT 61.296 55.000 0.00 0.00 45.53 3.21
4262 4723 1.134487 CAACGCTAACGCCCACATG 59.866 57.895 0.00 0.00 45.53 3.21
4263 4724 1.302192 AACGCTAACGCCCACATGT 60.302 52.632 0.00 0.00 45.53 3.21
4264 4725 1.573829 AACGCTAACGCCCACATGTG 61.574 55.000 19.31 19.31 45.53 3.21
4265 4726 2.032634 CGCTAACGCCCACATGTGT 61.033 57.895 23.79 8.06 0.00 3.72
4266 4727 1.501741 GCTAACGCCCACATGTGTG 59.498 57.895 23.79 14.60 45.23 3.82
4274 4735 3.672293 CACATGTGTGGTGGGAGC 58.328 61.111 18.03 0.00 42.10 4.70
4275 4736 1.973281 CACATGTGTGGTGGGAGCC 60.973 63.158 18.03 0.00 42.10 4.70
4276 4737 2.435663 CATGTGTGGTGGGAGCCA 59.564 61.111 0.00 0.00 35.93 4.75
4277 4738 1.228521 CATGTGTGGTGGGAGCCAA 60.229 57.895 0.00 0.00 40.68 4.52
4278 4739 0.827089 CATGTGTGGTGGGAGCCAAA 60.827 55.000 0.00 0.00 40.68 3.28
4279 4740 0.114954 ATGTGTGGTGGGAGCCAAAT 59.885 50.000 0.00 0.00 40.68 2.32
4280 4741 0.539438 TGTGTGGTGGGAGCCAAATC 60.539 55.000 0.00 0.00 40.68 2.17
4281 4742 1.076549 TGTGGTGGGAGCCAAATCC 59.923 57.895 0.00 0.00 40.68 3.01
4282 4743 2.046285 GTGGTGGGAGCCAAATCCG 61.046 63.158 0.00 0.00 40.68 4.18
4283 4744 2.355115 GGTGGGAGCCAAATCCGT 59.645 61.111 0.00 0.00 40.56 4.69
4284 4745 1.749258 GGTGGGAGCCAAATCCGTC 60.749 63.158 0.00 0.00 40.56 4.79
4285 4746 1.749258 GTGGGAGCCAAATCCGTCC 60.749 63.158 0.00 0.00 40.56 4.79
4286 4747 2.227757 TGGGAGCCAAATCCGTCCA 61.228 57.895 0.00 0.00 40.56 4.02
4287 4748 1.749258 GGGAGCCAAATCCGTCCAC 60.749 63.158 0.00 0.00 40.56 4.02
4288 4749 1.002624 GGAGCCAAATCCGTCCACA 60.003 57.895 0.00 0.00 0.00 4.17
4289 4750 1.305930 GGAGCCAAATCCGTCCACAC 61.306 60.000 0.00 0.00 0.00 3.82
4290 4751 1.635663 GAGCCAAATCCGTCCACACG 61.636 60.000 0.00 0.00 46.29 4.49
4291 4752 2.867472 CCAAATCCGTCCACACGC 59.133 61.111 0.00 0.00 45.29 5.34
4292 4753 1.963855 CCAAATCCGTCCACACGCA 60.964 57.895 0.00 0.00 45.29 5.24
4293 4754 1.206578 CAAATCCGTCCACACGCAC 59.793 57.895 0.00 0.00 45.29 5.34
4294 4755 1.070786 AAATCCGTCCACACGCACT 59.929 52.632 0.00 0.00 45.29 4.40
4295 4756 0.319083 AAATCCGTCCACACGCACTA 59.681 50.000 0.00 0.00 45.29 2.74
4296 4757 0.535335 AATCCGTCCACACGCACTAT 59.465 50.000 0.00 0.00 45.29 2.12
4297 4758 1.395635 ATCCGTCCACACGCACTATA 58.604 50.000 0.00 0.00 45.29 1.31
4298 4759 0.736636 TCCGTCCACACGCACTATAG 59.263 55.000 0.00 0.00 45.29 1.31
4299 4760 0.870307 CCGTCCACACGCACTATAGC 60.870 60.000 0.00 0.00 45.29 2.97
4300 4761 0.179148 CGTCCACACGCACTATAGCA 60.179 55.000 0.00 0.00 39.69 3.49
4301 4762 1.536072 CGTCCACACGCACTATAGCAT 60.536 52.381 0.00 0.00 39.69 3.79
4302 4763 2.287368 CGTCCACACGCACTATAGCATA 60.287 50.000 0.00 0.00 39.69 3.14
4303 4764 3.050619 GTCCACACGCACTATAGCATAC 58.949 50.000 0.00 0.00 0.00 2.39
4304 4765 2.691011 TCCACACGCACTATAGCATACA 59.309 45.455 0.00 0.00 0.00 2.29
4305 4766 3.131400 TCCACACGCACTATAGCATACAA 59.869 43.478 0.00 0.00 0.00 2.41
4306 4767 3.868661 CCACACGCACTATAGCATACAAA 59.131 43.478 0.00 0.00 0.00 2.83
4307 4768 4.260212 CCACACGCACTATAGCATACAAAC 60.260 45.833 0.00 0.00 0.00 2.93
4308 4769 4.566759 CACACGCACTATAGCATACAAACT 59.433 41.667 0.00 0.00 0.00 2.66
4309 4770 5.746721 CACACGCACTATAGCATACAAACTA 59.253 40.000 0.00 0.00 0.00 2.24
4310 4771 5.747197 ACACGCACTATAGCATACAAACTAC 59.253 40.000 0.00 0.00 0.00 2.73
4311 4772 4.974275 ACGCACTATAGCATACAAACTACG 59.026 41.667 0.00 0.00 0.00 3.51
4312 4773 4.974275 CGCACTATAGCATACAAACTACGT 59.026 41.667 0.00 0.00 0.00 3.57
4313 4774 5.115171 CGCACTATAGCATACAAACTACGTC 59.885 44.000 0.00 0.00 0.00 4.34
4314 4775 5.975344 GCACTATAGCATACAAACTACGTCA 59.025 40.000 0.00 0.00 0.00 4.35
4315 4776 6.641314 GCACTATAGCATACAAACTACGTCAT 59.359 38.462 0.00 0.00 0.00 3.06
4316 4777 7.806487 GCACTATAGCATACAAACTACGTCATA 59.194 37.037 0.00 0.00 0.00 2.15
4317 4778 9.841880 CACTATAGCATACAAACTACGTCATAT 57.158 33.333 0.00 0.00 0.00 1.78
4321 4782 7.875316 AGCATACAAACTACGTCATATCATC 57.125 36.000 0.00 0.00 0.00 2.92
4322 4783 6.582672 AGCATACAAACTACGTCATATCATCG 59.417 38.462 0.00 0.00 0.00 3.84
4323 4784 6.667621 GCATACAAACTACGTCATATCATCGC 60.668 42.308 0.00 0.00 0.00 4.58
4324 4785 4.678622 ACAAACTACGTCATATCATCGCA 58.321 39.130 0.00 0.00 0.00 5.10
4325 4786 5.289595 ACAAACTACGTCATATCATCGCAT 58.710 37.500 0.00 0.00 0.00 4.73
4326 4787 5.175673 ACAAACTACGTCATATCATCGCATG 59.824 40.000 0.00 0.00 0.00 4.06
4327 4788 3.245797 ACTACGTCATATCATCGCATGC 58.754 45.455 7.91 7.91 0.00 4.06
4328 4789 1.432514 ACGTCATATCATCGCATGCC 58.567 50.000 13.15 0.00 0.00 4.40
4329 4790 1.001293 ACGTCATATCATCGCATGCCT 59.999 47.619 13.15 0.00 0.00 4.75
4330 4791 2.231235 ACGTCATATCATCGCATGCCTA 59.769 45.455 13.15 0.07 0.00 3.93
4331 4792 2.600420 CGTCATATCATCGCATGCCTAC 59.400 50.000 13.15 0.00 0.00 3.18
4332 4793 3.588955 GTCATATCATCGCATGCCTACA 58.411 45.455 13.15 0.00 0.00 2.74
4333 4794 4.186926 GTCATATCATCGCATGCCTACAT 58.813 43.478 13.15 2.09 36.79 2.29
4347 4808 6.610075 ATGCCTACATGTGGAAATCTTTTT 57.390 33.333 11.31 0.00 34.35 1.94
4356 4817 7.710475 ACATGTGGAAATCTTTTTCGAAAACAT 59.290 29.630 22.41 16.06 41.84 2.71
4383 4844 3.951115 ACACGTGTGAGCGTTAGAA 57.049 47.368 22.71 0.00 43.83 2.10
4527 4991 0.391263 GGTTTCTCTCCGCGGTCAAT 60.391 55.000 27.15 0.00 0.00 2.57
4535 4999 2.677003 CCGCGGTCAATGTTTCGCT 61.677 57.895 19.50 0.00 45.11 4.93
4775 5245 5.048224 GCAACTGTCTAGTGTTAGTAGGTGA 60.048 44.000 0.00 0.00 37.19 4.02
4823 5294 1.074926 ATGCCGTCTCCTCTCCCAT 60.075 57.895 0.00 0.00 0.00 4.00
4841 5312 3.885297 CCCATACACCAAAAGCTATCAGG 59.115 47.826 0.00 0.00 0.00 3.86
4842 5313 3.885297 CCATACACCAAAAGCTATCAGGG 59.115 47.826 0.00 0.00 0.00 4.45
4843 5314 1.839424 ACACCAAAAGCTATCAGGGC 58.161 50.000 0.00 0.00 0.00 5.19
4844 5315 1.075374 ACACCAAAAGCTATCAGGGCA 59.925 47.619 0.00 0.00 0.00 5.36
4845 5316 2.291800 ACACCAAAAGCTATCAGGGCAT 60.292 45.455 0.00 0.00 0.00 4.40
4846 5317 2.360165 CACCAAAAGCTATCAGGGCATC 59.640 50.000 0.00 0.00 0.00 3.91
4847 5318 2.243221 ACCAAAAGCTATCAGGGCATCT 59.757 45.455 0.00 0.00 0.00 2.90
4848 5319 2.883386 CCAAAAGCTATCAGGGCATCTC 59.117 50.000 0.00 0.00 0.00 2.75
4849 5320 2.883386 CAAAAGCTATCAGGGCATCTCC 59.117 50.000 0.00 0.00 0.00 3.71
4850 5321 1.811778 AAGCTATCAGGGCATCTCCA 58.188 50.000 0.00 0.00 36.21 3.86
4851 5322 1.811778 AGCTATCAGGGCATCTCCAA 58.188 50.000 0.00 0.00 36.21 3.53
4852 5323 2.346529 AGCTATCAGGGCATCTCCAAT 58.653 47.619 0.00 0.00 36.21 3.16
4853 5324 2.040012 AGCTATCAGGGCATCTCCAATG 59.960 50.000 0.00 0.00 36.21 2.82
4854 5325 2.878935 GCTATCAGGGCATCTCCAATGG 60.879 54.545 0.00 0.00 36.21 3.16
4855 5326 0.481567 ATCAGGGCATCTCCAATGGG 59.518 55.000 0.00 0.00 36.21 4.00
4856 5327 0.624206 TCAGGGCATCTCCAATGGGA 60.624 55.000 0.00 0.00 42.29 4.37
4866 5337 1.860641 TCCAATGGGAGACGCTAAGA 58.139 50.000 0.00 0.00 38.64 2.10
4867 5338 2.184533 TCCAATGGGAGACGCTAAGAA 58.815 47.619 0.00 0.00 38.64 2.52
4868 5339 2.168521 TCCAATGGGAGACGCTAAGAAG 59.831 50.000 0.00 0.00 38.64 2.85
4869 5340 2.555199 CAATGGGAGACGCTAAGAAGG 58.445 52.381 0.00 0.00 0.00 3.46
4870 5341 1.123928 ATGGGAGACGCTAAGAAGGG 58.876 55.000 0.00 0.00 41.33 3.95
4871 5342 0.976073 TGGGAGACGCTAAGAAGGGG 60.976 60.000 0.00 0.00 39.91 4.79
4872 5343 1.144276 GGAGACGCTAAGAAGGGGC 59.856 63.158 0.00 0.00 44.06 5.80
4876 5347 2.812499 CGCTAAGAAGGGGCGCTA 59.188 61.111 7.64 0.00 42.28 4.26
4877 5348 1.300233 CGCTAAGAAGGGGCGCTAG 60.300 63.158 7.64 0.00 42.28 3.42
4878 5349 1.069935 GCTAAGAAGGGGCGCTAGG 59.930 63.158 7.64 0.00 0.00 3.02
4879 5350 1.400530 GCTAAGAAGGGGCGCTAGGA 61.401 60.000 7.64 0.00 0.00 2.94
4880 5351 1.120530 CTAAGAAGGGGCGCTAGGAA 58.879 55.000 7.64 0.00 0.00 3.36
4881 5352 1.485066 CTAAGAAGGGGCGCTAGGAAA 59.515 52.381 7.64 0.00 0.00 3.13
4882 5353 0.919710 AAGAAGGGGCGCTAGGAAAT 59.080 50.000 7.64 0.00 0.00 2.17
4883 5354 1.802553 AGAAGGGGCGCTAGGAAATA 58.197 50.000 7.64 0.00 0.00 1.40
4884 5355 1.416772 AGAAGGGGCGCTAGGAAATAC 59.583 52.381 7.64 0.00 0.00 1.89
4885 5356 1.416772 GAAGGGGCGCTAGGAAATACT 59.583 52.381 7.64 0.00 0.00 2.12
4886 5357 1.508256 AGGGGCGCTAGGAAATACTT 58.492 50.000 7.64 0.00 0.00 2.24
4887 5358 1.416772 AGGGGCGCTAGGAAATACTTC 59.583 52.381 7.64 0.00 0.00 3.01
4895 5366 3.581163 GGAAATACTTCCCGGCCAA 57.419 52.632 2.24 0.00 44.91 4.52
4896 5367 2.067365 GGAAATACTTCCCGGCCAAT 57.933 50.000 2.24 0.00 44.91 3.16
4897 5368 1.954382 GGAAATACTTCCCGGCCAATC 59.046 52.381 2.24 0.00 44.91 2.67
4898 5369 1.602377 GAAATACTTCCCGGCCAATCG 59.398 52.381 2.24 0.00 0.00 3.34
4899 5370 0.834612 AATACTTCCCGGCCAATCGA 59.165 50.000 2.24 0.00 0.00 3.59
4900 5371 0.106149 ATACTTCCCGGCCAATCGAC 59.894 55.000 2.24 0.00 0.00 4.20
4901 5372 2.287457 TACTTCCCGGCCAATCGACG 62.287 60.000 2.24 0.00 0.00 5.12
4902 5373 4.460683 TTCCCGGCCAATCGACGG 62.461 66.667 2.24 4.52 46.79 4.79
4904 5375 4.770874 CCCGGCCAATCGACGGTT 62.771 66.667 2.24 0.00 45.85 4.44
4905 5376 3.192922 CCGGCCAATCGACGGTTC 61.193 66.667 2.24 0.00 42.53 3.62
4907 5378 3.861263 GGCCAATCGACGGTTCGC 61.861 66.667 1.45 1.45 45.46 4.70
4908 5379 2.813908 GCCAATCGACGGTTCGCT 60.814 61.111 3.01 0.00 45.46 4.93
4909 5380 2.799540 GCCAATCGACGGTTCGCTC 61.800 63.158 3.01 0.00 45.46 5.03
4910 5381 2.505498 CCAATCGACGGTTCGCTCG 61.505 63.158 0.00 0.00 45.46 5.03
4911 5382 1.800315 CAATCGACGGTTCGCTCGT 60.800 57.895 0.00 0.00 45.46 4.18
4916 5387 4.667420 ACGGTTCGCTCGTCAATT 57.333 50.000 0.00 0.00 35.87 2.32
4917 5388 2.442084 ACGGTTCGCTCGTCAATTC 58.558 52.632 0.00 0.00 35.87 2.17
4918 5389 1.012486 ACGGTTCGCTCGTCAATTCC 61.012 55.000 0.00 0.00 35.87 3.01
4919 5390 0.736325 CGGTTCGCTCGTCAATTCCT 60.736 55.000 0.00 0.00 0.00 3.36
4920 5391 0.721718 GGTTCGCTCGTCAATTCCTG 59.278 55.000 0.00 0.00 0.00 3.86
4921 5392 0.721718 GTTCGCTCGTCAATTCCTGG 59.278 55.000 0.00 0.00 0.00 4.45
4922 5393 1.019278 TTCGCTCGTCAATTCCTGGC 61.019 55.000 0.00 0.00 0.00 4.85
4923 5394 1.448540 CGCTCGTCAATTCCTGGCT 60.449 57.895 0.00 0.00 0.00 4.75
4924 5395 1.021390 CGCTCGTCAATTCCTGGCTT 61.021 55.000 0.00 0.00 0.00 4.35
4925 5396 0.729690 GCTCGTCAATTCCTGGCTTC 59.270 55.000 0.00 0.00 0.00 3.86
4926 5397 1.002366 CTCGTCAATTCCTGGCTTCG 58.998 55.000 0.00 0.00 0.00 3.79
4927 5398 0.391130 TCGTCAATTCCTGGCTTCGG 60.391 55.000 0.00 0.00 0.00 4.30
4928 5399 1.369091 CGTCAATTCCTGGCTTCGGG 61.369 60.000 0.00 0.00 38.29 5.14
4929 5400 1.378514 TCAATTCCTGGCTTCGGGC 60.379 57.895 0.00 0.00 36.86 6.13
4930 5401 2.438434 AATTCCTGGCTTCGGGCG 60.438 61.111 0.00 0.00 44.06 6.13
4946 5417 2.735478 CGCCGTGTAGACGCCAAA 60.735 61.111 6.94 0.00 44.68 3.28
4947 5418 2.726691 CGCCGTGTAGACGCCAAAG 61.727 63.158 6.94 0.00 44.68 2.77
4948 5419 2.388232 GCCGTGTAGACGCCAAAGG 61.388 63.158 6.94 0.00 44.68 3.11
4949 5420 1.290955 CCGTGTAGACGCCAAAGGA 59.709 57.895 6.94 0.00 44.68 3.36
4950 5421 0.108329 CCGTGTAGACGCCAAAGGAT 60.108 55.000 6.94 0.00 44.68 3.24
4951 5422 0.999406 CGTGTAGACGCCAAAGGATG 59.001 55.000 0.00 0.00 39.10 3.51
4952 5423 0.727398 GTGTAGACGCCAAAGGATGC 59.273 55.000 0.00 0.00 0.00 3.91
4953 5424 0.613260 TGTAGACGCCAAAGGATGCT 59.387 50.000 0.00 0.00 0.00 3.79
4954 5425 1.003118 TGTAGACGCCAAAGGATGCTT 59.997 47.619 0.00 0.00 0.00 3.91
4955 5426 1.666189 GTAGACGCCAAAGGATGCTTC 59.334 52.381 0.00 0.00 0.00 3.86
4956 5427 1.021390 AGACGCCAAAGGATGCTTCG 61.021 55.000 0.00 2.29 31.67 3.79
4957 5428 1.003839 ACGCCAAAGGATGCTTCGA 60.004 52.632 12.40 0.00 0.00 3.71
4958 5429 1.021390 ACGCCAAAGGATGCTTCGAG 61.021 55.000 12.40 5.18 0.00 4.04
4959 5430 1.431036 GCCAAAGGATGCTTCGAGC 59.569 57.895 0.00 0.00 42.82 5.03
4960 5431 1.717937 CCAAAGGATGCTTCGAGCG 59.282 57.895 0.00 0.00 46.26 5.03
4961 5432 1.061570 CAAAGGATGCTTCGAGCGC 59.938 57.895 0.00 0.00 46.26 5.92
4962 5433 1.078848 AAAGGATGCTTCGAGCGCT 60.079 52.632 11.27 11.27 46.26 5.92
4963 5434 0.674895 AAAGGATGCTTCGAGCGCTT 60.675 50.000 13.26 0.00 46.26 4.68
4964 5435 0.175760 AAGGATGCTTCGAGCGCTTA 59.824 50.000 13.26 0.00 46.26 3.09
4965 5436 0.528684 AGGATGCTTCGAGCGCTTAC 60.529 55.000 13.26 0.00 46.26 2.34
4966 5437 1.491505 GGATGCTTCGAGCGCTTACC 61.492 60.000 13.26 0.00 46.26 2.85
4967 5438 0.528684 GATGCTTCGAGCGCTTACCT 60.529 55.000 13.26 0.00 46.26 3.08
4968 5439 0.108138 ATGCTTCGAGCGCTTACCTT 60.108 50.000 13.26 0.00 46.26 3.50
4969 5440 0.320421 TGCTTCGAGCGCTTACCTTT 60.320 50.000 13.26 0.00 46.26 3.11
4970 5441 0.796927 GCTTCGAGCGCTTACCTTTT 59.203 50.000 13.26 0.00 0.00 2.27
4971 5442 1.201932 GCTTCGAGCGCTTACCTTTTC 60.202 52.381 13.26 0.00 0.00 2.29
4972 5443 1.393883 CTTCGAGCGCTTACCTTTTCC 59.606 52.381 13.26 0.00 0.00 3.13
4973 5444 0.606604 TCGAGCGCTTACCTTTTCCT 59.393 50.000 13.26 0.00 0.00 3.36
4974 5445 1.001633 TCGAGCGCTTACCTTTTCCTT 59.998 47.619 13.26 0.00 0.00 3.36
4975 5446 1.804748 CGAGCGCTTACCTTTTCCTTT 59.195 47.619 13.26 0.00 0.00 3.11
4976 5447 2.159693 CGAGCGCTTACCTTTTCCTTTC 60.160 50.000 13.26 0.00 0.00 2.62
4977 5448 2.812011 GAGCGCTTACCTTTTCCTTTCA 59.188 45.455 13.26 0.00 0.00 2.69
4978 5449 2.552743 AGCGCTTACCTTTTCCTTTCAC 59.447 45.455 2.64 0.00 0.00 3.18
4979 5450 2.664698 GCGCTTACCTTTTCCTTTCACG 60.665 50.000 0.00 0.00 0.00 4.35
4980 5451 2.095919 CGCTTACCTTTTCCTTTCACGG 60.096 50.000 0.00 0.00 0.00 4.94
4981 5452 3.143728 GCTTACCTTTTCCTTTCACGGA 58.856 45.455 0.00 0.00 0.00 4.69
4982 5453 3.058432 GCTTACCTTTTCCTTTCACGGAC 60.058 47.826 0.00 0.00 31.44 4.79
4983 5454 1.589803 ACCTTTTCCTTTCACGGACG 58.410 50.000 0.00 0.00 31.44 4.79
4984 5455 1.139455 ACCTTTTCCTTTCACGGACGA 59.861 47.619 0.00 0.00 31.44 4.20
4985 5456 2.224450 ACCTTTTCCTTTCACGGACGAT 60.224 45.455 0.00 0.00 31.44 3.73
4986 5457 3.007182 ACCTTTTCCTTTCACGGACGATA 59.993 43.478 0.00 0.00 31.44 2.92
4987 5458 3.617263 CCTTTTCCTTTCACGGACGATAG 59.383 47.826 0.00 0.00 46.19 2.08
4988 5459 2.288961 TTCCTTTCACGGACGATAGC 57.711 50.000 0.00 0.00 42.67 2.97
4989 5460 0.099968 TCCTTTCACGGACGATAGCG 59.900 55.000 0.00 0.00 44.79 4.26
4999 5470 2.658593 CGATAGCGTCGGGCCTTG 60.659 66.667 0.84 0.00 46.47 3.61
5000 5471 2.499685 GATAGCGTCGGGCCTTGT 59.500 61.111 0.84 0.00 45.17 3.16
5001 5472 1.737816 GATAGCGTCGGGCCTTGTA 59.262 57.895 0.84 0.00 45.17 2.41
5002 5473 0.317479 GATAGCGTCGGGCCTTGTAT 59.683 55.000 0.84 0.00 45.17 2.29
5003 5474 0.756903 ATAGCGTCGGGCCTTGTATT 59.243 50.000 0.84 0.00 45.17 1.89
5004 5475 1.401761 TAGCGTCGGGCCTTGTATTA 58.598 50.000 0.84 0.00 45.17 0.98
5005 5476 0.104304 AGCGTCGGGCCTTGTATTAG 59.896 55.000 0.84 0.00 45.17 1.73
5006 5477 0.103572 GCGTCGGGCCTTGTATTAGA 59.896 55.000 0.84 0.00 34.80 2.10
5007 5478 1.270147 GCGTCGGGCCTTGTATTAGAT 60.270 52.381 0.84 0.00 34.80 1.98
5008 5479 2.673833 CGTCGGGCCTTGTATTAGATC 58.326 52.381 0.84 0.00 0.00 2.75
5009 5480 2.609737 CGTCGGGCCTTGTATTAGATCC 60.610 54.545 0.84 0.00 0.00 3.36
5010 5481 1.616865 TCGGGCCTTGTATTAGATCCG 59.383 52.381 0.84 0.00 37.82 4.18
5011 5482 1.616865 CGGGCCTTGTATTAGATCCGA 59.383 52.381 0.84 0.00 38.64 4.55
5012 5483 2.036733 CGGGCCTTGTATTAGATCCGAA 59.963 50.000 0.84 0.00 38.64 4.30
5013 5484 3.306780 CGGGCCTTGTATTAGATCCGAAT 60.307 47.826 0.84 0.00 38.64 3.34
5014 5485 4.652822 GGGCCTTGTATTAGATCCGAATT 58.347 43.478 0.84 0.00 0.00 2.17
5015 5486 4.695928 GGGCCTTGTATTAGATCCGAATTC 59.304 45.833 0.84 0.00 0.00 2.17
5016 5487 5.305585 GGCCTTGTATTAGATCCGAATTCA 58.694 41.667 6.22 0.00 0.00 2.57
5017 5488 5.763204 GGCCTTGTATTAGATCCGAATTCAA 59.237 40.000 6.22 8.68 0.00 2.69
5018 5489 6.293462 GGCCTTGTATTAGATCCGAATTCAAC 60.293 42.308 6.22 0.00 0.00 3.18
5019 5490 6.564125 GCCTTGTATTAGATCCGAATTCAACG 60.564 42.308 6.22 0.00 0.00 4.10
5020 5491 5.900339 TGTATTAGATCCGAATTCAACGC 57.100 39.130 6.22 0.00 0.00 4.84
5021 5492 4.748102 TGTATTAGATCCGAATTCAACGCC 59.252 41.667 6.22 0.00 0.00 5.68
5022 5493 3.536956 TTAGATCCGAATTCAACGCCT 57.463 42.857 6.22 0.00 0.00 5.52
5023 5494 2.403252 AGATCCGAATTCAACGCCTT 57.597 45.000 6.22 0.00 0.00 4.35
5024 5495 2.711542 AGATCCGAATTCAACGCCTTT 58.288 42.857 6.22 0.00 0.00 3.11
5025 5496 3.081804 AGATCCGAATTCAACGCCTTTT 58.918 40.909 6.22 0.00 0.00 2.27
5026 5497 2.697431 TCCGAATTCAACGCCTTTTG 57.303 45.000 6.22 0.00 0.00 2.44
5027 5498 1.950909 TCCGAATTCAACGCCTTTTGT 59.049 42.857 6.22 0.00 0.00 2.83
5028 5499 2.359531 TCCGAATTCAACGCCTTTTGTT 59.640 40.909 6.22 0.00 0.00 2.83
5029 5500 3.564644 TCCGAATTCAACGCCTTTTGTTA 59.435 39.130 6.22 0.00 0.00 2.41
5030 5501 3.911964 CCGAATTCAACGCCTTTTGTTAG 59.088 43.478 6.22 0.00 0.00 2.34
5031 5502 3.360758 CGAATTCAACGCCTTTTGTTAGC 59.639 43.478 6.22 0.00 0.00 3.09
5035 5506 3.263941 CGCCTTTTGTTAGCGCCT 58.736 55.556 2.29 0.00 43.72 5.52
5036 5507 2.462503 CGCCTTTTGTTAGCGCCTA 58.537 52.632 2.29 0.00 43.72 3.93
5037 5508 0.096454 CGCCTTTTGTTAGCGCCTAC 59.904 55.000 2.29 2.57 43.72 3.18
5038 5509 0.450583 GCCTTTTGTTAGCGCCTACC 59.549 55.000 2.29 0.00 0.00 3.18
5039 5510 1.816074 CCTTTTGTTAGCGCCTACCA 58.184 50.000 2.29 0.00 0.00 3.25
5040 5511 2.365582 CCTTTTGTTAGCGCCTACCAT 58.634 47.619 2.29 0.00 0.00 3.55
5041 5512 2.752903 CCTTTTGTTAGCGCCTACCATT 59.247 45.455 2.29 0.00 0.00 3.16
5042 5513 3.427503 CCTTTTGTTAGCGCCTACCATTG 60.428 47.826 2.29 0.00 0.00 2.82
5043 5514 1.745232 TTGTTAGCGCCTACCATTGG 58.255 50.000 2.29 0.00 0.00 3.16
5044 5515 0.906066 TGTTAGCGCCTACCATTGGA 59.094 50.000 10.37 0.00 0.00 3.53
5045 5516 1.279558 TGTTAGCGCCTACCATTGGAA 59.720 47.619 10.37 0.00 0.00 3.53
5046 5517 1.940613 GTTAGCGCCTACCATTGGAAG 59.059 52.381 10.37 0.00 0.00 3.46
5047 5518 1.491668 TAGCGCCTACCATTGGAAGA 58.508 50.000 10.37 0.00 0.00 2.87
5048 5519 0.179000 AGCGCCTACCATTGGAAGAG 59.821 55.000 10.37 3.54 0.00 2.85
5049 5520 0.107654 GCGCCTACCATTGGAAGAGT 60.108 55.000 10.37 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.615834 TTTTTGCACGGCGGCGAC 62.616 61.111 38.93 27.60 36.28 5.19
59 60 1.202143 GGACCGTTCATGGCGATTTTC 60.202 52.381 11.19 3.75 0.00 2.29
63 64 2.202878 CGGACCGTTCATGGCGAT 60.203 61.111 5.48 0.00 0.00 4.58
135 138 2.433145 CCGCTGACGCACATGTCT 60.433 61.111 0.00 0.00 39.64 3.41
139 142 2.202932 GATCCCGCTGACGCACAT 60.203 61.111 0.00 0.00 38.22 3.21
434 478 0.482887 CCCACCACCTTCCTTTCCTT 59.517 55.000 0.00 0.00 0.00 3.36
599 643 9.332502 TGTCTCTTGTAAGTTGTGCTTATAAAA 57.667 29.630 0.00 0.00 41.25 1.52
600 644 8.770828 GTGTCTCTTGTAAGTTGTGCTTATAAA 58.229 33.333 0.00 0.00 41.25 1.40
687 731 6.264292 AGGGAGTTTGTTTGCTTTTTGTTTTT 59.736 30.769 0.00 0.00 0.00 1.94
688 732 5.767665 AGGGAGTTTGTTTGCTTTTTGTTTT 59.232 32.000 0.00 0.00 0.00 2.43
689 733 5.181056 CAGGGAGTTTGTTTGCTTTTTGTTT 59.819 36.000 0.00 0.00 0.00 2.83
691 735 4.252878 CAGGGAGTTTGTTTGCTTTTTGT 58.747 39.130 0.00 0.00 0.00 2.83
692 736 3.063861 GCAGGGAGTTTGTTTGCTTTTTG 59.936 43.478 0.00 0.00 0.00 2.44
715 1044 4.151689 TCGTTTTCCGTCACATGAATCTTC 59.848 41.667 0.00 0.00 37.94 2.87
757 1086 0.466189 GGTGGAGTGTATGGGCCATG 60.466 60.000 29.14 0.00 32.26 3.66
798 1127 0.539438 TCAAAAGGGCAAGGCGATGT 60.539 50.000 0.00 0.00 0.00 3.06
802 1136 0.318955 CTTGTCAAAAGGGCAAGGCG 60.319 55.000 0.89 0.00 36.79 5.52
841 1175 1.078567 GGGGTTGAGCTGAGCAGAG 60.079 63.158 7.39 0.00 0.00 3.35
949 1284 2.746362 CAAGCTACAAGAAGCAAGAGGG 59.254 50.000 0.00 0.00 45.30 4.30
954 1289 0.874390 CGGCAAGCTACAAGAAGCAA 59.126 50.000 0.00 0.00 45.30 3.91
975 1310 2.147315 GAGAGTGCAGCAGACACGGA 62.147 60.000 0.00 0.00 42.94 4.69
1121 1456 1.226916 CTGCTGTGCCGAGAGCTAG 60.227 63.158 0.00 0.00 44.23 3.42
1122 1457 2.714991 CCTGCTGTGCCGAGAGCTA 61.715 63.158 0.00 0.00 44.23 3.32
1467 1812 2.098443 GGTTTTGACCAAGTTCAAGCGA 59.902 45.455 0.00 0.00 36.84 4.93
1469 1814 3.518634 TGGTTTTGACCAAGTTCAAGC 57.481 42.857 0.00 0.00 36.84 4.01
1474 1819 1.537990 GCGCATGGTTTTGACCAAGTT 60.538 47.619 0.30 0.00 43.83 2.66
1475 1820 0.031994 GCGCATGGTTTTGACCAAGT 59.968 50.000 0.30 0.00 43.83 3.16
1480 1825 2.364311 GCACGCGCATGGTTTTGAC 61.364 57.895 5.73 0.00 38.36 3.18
1512 1857 4.041444 AGCTTGGAATACATTTTGCCCAAA 59.959 37.500 0.00 0.00 33.83 3.28
1559 1905 7.181569 TGTCATCATCCACAGACAAGTTATA 57.818 36.000 0.00 0.00 37.99 0.98
1560 1906 6.053632 TGTCATCATCCACAGACAAGTTAT 57.946 37.500 0.00 0.00 37.99 1.89
1561 1907 5.482163 TGTCATCATCCACAGACAAGTTA 57.518 39.130 0.00 0.00 37.99 2.24
1562 1908 4.356405 TGTCATCATCCACAGACAAGTT 57.644 40.909 0.00 0.00 37.99 2.66
1570 1916 2.874086 GCGATCAATGTCATCATCCACA 59.126 45.455 0.00 0.00 32.56 4.17
1729 2076 1.590238 CAAATTCTCGTAGCTGCTCCG 59.410 52.381 4.91 6.92 0.00 4.63
1730 2077 2.605366 GTCAAATTCTCGTAGCTGCTCC 59.395 50.000 4.91 0.00 0.00 4.70
1733 2080 1.324736 CGGTCAAATTCTCGTAGCTGC 59.675 52.381 0.00 0.00 0.00 5.25
2299 2646 2.614481 GGACTTTCCAGCCGAACACATA 60.614 50.000 0.00 0.00 36.28 2.29
2300 2647 1.523758 GACTTTCCAGCCGAACACAT 58.476 50.000 0.00 0.00 0.00 3.21
2301 2648 0.534203 GGACTTTCCAGCCGAACACA 60.534 55.000 0.00 0.00 36.28 3.72
2302 2649 1.235281 GGGACTTTCCAGCCGAACAC 61.235 60.000 0.00 0.00 38.64 3.32
2391 2738 4.033776 CACCCCGTCCACCTGCAT 62.034 66.667 0.00 0.00 0.00 3.96
2478 2825 4.003788 CGTCAGGCCGTCCAGGTT 62.004 66.667 0.00 0.00 43.70 3.50
2571 2918 5.536161 GGACTTAATAGGGGTGTGATACGTA 59.464 44.000 0.00 0.00 0.00 3.57
2572 2919 4.343239 GGACTTAATAGGGGTGTGATACGT 59.657 45.833 0.00 0.00 0.00 3.57
2586 2942 9.886132 GAGAGAAATACTGTTTGGGACTTAATA 57.114 33.333 0.00 0.00 0.00 0.98
2617 2973 4.967730 TCGTGTCGTGCGTGTCGG 62.968 66.667 0.00 0.00 0.00 4.79
2650 3006 1.759445 AGGGACTCGTCTGATCATTGG 59.241 52.381 0.00 0.00 0.00 3.16
2747 3115 2.146073 AATGTTCAGCAAGCGTGGCC 62.146 55.000 0.00 0.00 0.00 5.36
3044 3432 0.595095 CCAACAGGAACAGAAGCAGC 59.405 55.000 0.00 0.00 0.00 5.25
3070 3458 5.516339 CACAGCAAAGTTACTCAAAACAAGG 59.484 40.000 0.00 0.00 0.00 3.61
3236 3644 6.211587 TGTATGTATGTATATGTACCGGGC 57.788 41.667 6.32 0.00 0.00 6.13
3260 3668 5.471556 TGTTTTCTCCTGAACCGTATGTA 57.528 39.130 0.00 0.00 31.02 2.29
3303 3721 4.829492 GCATTTATAGAGTGCCCTTTGGAT 59.171 41.667 0.00 0.00 32.88 3.41
3420 3838 1.206610 CATGTGACCAGAGACAGGAGG 59.793 57.143 0.00 0.00 0.00 4.30
3507 3934 4.357947 TGGAGTGAGTGCCGACGC 62.358 66.667 0.00 0.00 0.00 5.19
3508 3935 2.430921 GTGGAGTGAGTGCCGACG 60.431 66.667 0.00 0.00 0.00 5.12
3530 3965 2.540361 GCCGATGCTGCAAGTAAATGAG 60.540 50.000 6.36 0.00 35.30 2.90
3533 3968 1.402968 CTGCCGATGCTGCAAGTAAAT 59.597 47.619 6.36 0.00 38.46 1.40
3534 3969 0.804364 CTGCCGATGCTGCAAGTAAA 59.196 50.000 6.36 0.00 38.46 2.01
3535 3970 2.470156 CTGCCGATGCTGCAAGTAA 58.530 52.632 6.36 0.00 38.46 2.24
4014 4451 2.678934 CGGGTTGTCGAGGAGGGA 60.679 66.667 0.00 0.00 0.00 4.20
4031 4468 0.741221 GTCATCGGCACTTGAGGTCC 60.741 60.000 0.00 0.00 0.00 4.46
4034 4471 0.798776 GTTGTCATCGGCACTTGAGG 59.201 55.000 0.00 0.00 0.00 3.86
4051 4488 5.841957 ACTCTGAAATCTGCAAAACTGTT 57.158 34.783 0.00 0.00 0.00 3.16
4073 4531 3.380320 TCGACTGTTGTCTCAACTCAGAA 59.620 43.478 12.66 0.00 40.86 3.02
4074 4532 2.949644 TCGACTGTTGTCTCAACTCAGA 59.050 45.455 12.66 5.73 40.86 3.27
4075 4533 3.243234 ACTCGACTGTTGTCTCAACTCAG 60.243 47.826 12.66 6.42 40.86 3.35
4076 4534 2.688446 ACTCGACTGTTGTCTCAACTCA 59.312 45.455 12.66 0.00 40.86 3.41
4077 4535 3.243101 TGACTCGACTGTTGTCTCAACTC 60.243 47.826 12.66 3.80 40.86 3.01
4078 4536 2.688446 TGACTCGACTGTTGTCTCAACT 59.312 45.455 12.66 0.00 40.86 3.16
4079 4537 3.079960 TGACTCGACTGTTGTCTCAAC 57.920 47.619 5.78 5.78 40.86 3.18
4080 4538 3.068165 ACATGACTCGACTGTTGTCTCAA 59.932 43.478 0.00 0.00 40.86 3.02
4242 4703 1.296056 ATGTGGGCGTTAGCGTTGTC 61.296 55.000 0.00 0.00 46.35 3.18
4243 4704 1.302192 ATGTGGGCGTTAGCGTTGT 60.302 52.632 0.00 0.00 46.35 3.32
4244 4705 1.134487 CATGTGGGCGTTAGCGTTG 59.866 57.895 0.00 0.00 46.35 4.10
4245 4706 1.302192 ACATGTGGGCGTTAGCGTT 60.302 52.632 0.00 0.00 46.35 4.84
4246 4707 2.032634 CACATGTGGGCGTTAGCGT 61.033 57.895 18.51 0.00 46.35 5.07
4247 4708 2.032634 ACACATGTGGGCGTTAGCG 61.033 57.895 28.64 0.77 46.35 4.26
4248 4709 1.501741 CACACATGTGGGCGTTAGC 59.498 57.895 28.64 0.00 42.10 3.09
4257 4718 1.973281 GGCTCCCACCACACATGTG 60.973 63.158 24.25 24.25 45.23 3.21
4258 4719 2.005606 TTGGCTCCCACCACACATGT 62.006 55.000 0.00 0.00 40.19 3.21
4259 4720 0.827089 TTTGGCTCCCACCACACATG 60.827 55.000 0.00 0.00 40.19 3.21
4260 4721 0.114954 ATTTGGCTCCCACCACACAT 59.885 50.000 0.00 0.00 40.19 3.21
4261 4722 0.539438 GATTTGGCTCCCACCACACA 60.539 55.000 0.00 0.00 40.19 3.72
4262 4723 1.250840 GGATTTGGCTCCCACCACAC 61.251 60.000 0.00 0.00 40.19 3.82
4263 4724 1.076549 GGATTTGGCTCCCACCACA 59.923 57.895 0.00 0.00 40.19 4.17
4264 4725 2.046285 CGGATTTGGCTCCCACCAC 61.046 63.158 0.00 0.00 40.19 4.16
4265 4726 2.354729 CGGATTTGGCTCCCACCA 59.645 61.111 0.00 0.00 38.16 4.17
4266 4727 1.749258 GACGGATTTGGCTCCCACC 60.749 63.158 0.00 0.00 30.78 4.61
4267 4728 1.749258 GGACGGATTTGGCTCCCAC 60.749 63.158 0.00 0.00 30.78 4.61
4268 4729 2.227757 TGGACGGATTTGGCTCCCA 61.228 57.895 0.00 0.00 31.04 4.37
4269 4730 1.749258 GTGGACGGATTTGGCTCCC 60.749 63.158 0.00 0.00 31.04 4.30
4270 4731 1.002624 TGTGGACGGATTTGGCTCC 60.003 57.895 0.00 0.00 0.00 4.70
4271 4732 1.635663 CGTGTGGACGGATTTGGCTC 61.636 60.000 0.00 0.00 42.18 4.70
4272 4733 1.671054 CGTGTGGACGGATTTGGCT 60.671 57.895 0.00 0.00 42.18 4.75
4273 4734 2.867472 CGTGTGGACGGATTTGGC 59.133 61.111 0.00 0.00 42.18 4.52
4274 4735 1.963855 TGCGTGTGGACGGATTTGG 60.964 57.895 0.00 0.00 46.20 3.28
4275 4736 3.649096 TGCGTGTGGACGGATTTG 58.351 55.556 0.00 0.00 46.20 2.32
4279 4740 0.736636 CTATAGTGCGTGTGGACGGA 59.263 55.000 0.00 0.00 46.20 4.69
4280 4741 0.870307 GCTATAGTGCGTGTGGACGG 60.870 60.000 0.84 0.00 46.20 4.79
4282 4743 2.225068 ATGCTATAGTGCGTGTGGAC 57.775 50.000 0.84 0.00 36.56 4.02
4283 4744 2.691011 TGTATGCTATAGTGCGTGTGGA 59.309 45.455 0.84 0.00 35.36 4.02
4284 4745 3.092334 TGTATGCTATAGTGCGTGTGG 57.908 47.619 0.84 0.00 35.36 4.17
4285 4746 4.566759 AGTTTGTATGCTATAGTGCGTGTG 59.433 41.667 0.84 0.00 35.36 3.82
4286 4747 4.755411 AGTTTGTATGCTATAGTGCGTGT 58.245 39.130 0.84 0.00 35.36 4.49
4287 4748 5.108368 CGTAGTTTGTATGCTATAGTGCGTG 60.108 44.000 0.84 0.00 35.36 5.34
4288 4749 4.974275 CGTAGTTTGTATGCTATAGTGCGT 59.026 41.667 0.84 0.00 35.36 5.24
4289 4750 4.974275 ACGTAGTTTGTATGCTATAGTGCG 59.026 41.667 0.84 0.00 37.78 5.34
4307 4768 2.600420 GGCATGCGATGATATGACGTAG 59.400 50.000 12.44 0.00 0.00 3.51
4308 4769 2.231235 AGGCATGCGATGATATGACGTA 59.769 45.455 12.44 0.00 37.40 3.57
4309 4770 1.001293 AGGCATGCGATGATATGACGT 59.999 47.619 12.44 0.00 37.40 4.34
4310 4771 1.718396 AGGCATGCGATGATATGACG 58.282 50.000 12.44 0.00 37.40 4.35
4311 4772 3.588955 TGTAGGCATGCGATGATATGAC 58.411 45.455 12.44 0.00 32.37 3.06
4312 4773 3.959535 TGTAGGCATGCGATGATATGA 57.040 42.857 12.44 0.00 0.00 2.15
4313 4774 4.531659 CATGTAGGCATGCGATGATATG 57.468 45.455 12.44 7.63 44.87 1.78
4322 4783 8.788154 GAAAAAGATTTCCACATGTAGGCATGC 61.788 40.741 9.90 9.90 45.00 4.06
4323 4784 6.532657 GAAAAAGATTTCCACATGTAGGCATG 59.467 38.462 0.00 6.09 45.63 4.06
4324 4785 6.610075 AAAAAGATTTCCACATGTAGGCAT 57.390 33.333 0.00 0.00 35.32 4.40
4325 4786 5.335583 CGAAAAAGATTTCCACATGTAGGCA 60.336 40.000 0.00 0.00 41.58 4.75
4326 4787 5.095490 CGAAAAAGATTTCCACATGTAGGC 58.905 41.667 0.00 0.00 41.58 3.93
4327 4788 6.494893 TCGAAAAAGATTTCCACATGTAGG 57.505 37.500 0.00 2.79 41.58 3.18
4328 4789 8.690840 GTTTTCGAAAAAGATTTCCACATGTAG 58.309 33.333 24.04 0.00 41.58 2.74
4329 4790 8.191446 TGTTTTCGAAAAAGATTTCCACATGTA 58.809 29.630 24.04 0.00 41.58 2.29
4330 4791 7.038659 TGTTTTCGAAAAAGATTTCCACATGT 58.961 30.769 24.04 0.00 41.58 3.21
4331 4792 7.462109 TGTTTTCGAAAAAGATTTCCACATG 57.538 32.000 24.04 0.00 41.58 3.21
4332 4793 8.661352 AATGTTTTCGAAAAAGATTTCCACAT 57.339 26.923 24.04 16.82 41.58 3.21
4333 4794 9.587772 TTAATGTTTTCGAAAAAGATTTCCACA 57.412 25.926 24.04 15.38 41.58 4.17
4334 4795 9.843874 GTTAATGTTTTCGAAAAAGATTTCCAC 57.156 29.630 24.04 16.18 41.58 4.02
4335 4796 8.747666 CGTTAATGTTTTCGAAAAAGATTTCCA 58.252 29.630 24.04 15.88 41.58 3.53
4336 4797 7.734297 GCGTTAATGTTTTCGAAAAAGATTTCC 59.266 33.333 24.04 15.56 41.58 3.13
4337 4798 7.734297 GGCGTTAATGTTTTCGAAAAAGATTTC 59.266 33.333 24.04 17.26 41.27 2.17
4338 4799 7.306925 GGGCGTTAATGTTTTCGAAAAAGATTT 60.307 33.333 24.04 16.21 0.00 2.17
4339 4800 6.144886 GGGCGTTAATGTTTTCGAAAAAGATT 59.855 34.615 24.04 23.27 0.00 2.40
4340 4801 5.631929 GGGCGTTAATGTTTTCGAAAAAGAT 59.368 36.000 24.04 15.88 0.00 2.40
4341 4802 4.977347 GGGCGTTAATGTTTTCGAAAAAGA 59.023 37.500 24.04 14.37 0.00 2.52
4342 4803 4.740695 TGGGCGTTAATGTTTTCGAAAAAG 59.259 37.500 24.04 5.80 0.00 2.27
4343 4804 4.503370 GTGGGCGTTAATGTTTTCGAAAAA 59.497 37.500 24.04 14.70 0.00 1.94
4344 4805 4.043073 GTGGGCGTTAATGTTTTCGAAAA 58.957 39.130 19.08 19.08 0.00 2.29
4345 4806 3.066342 TGTGGGCGTTAATGTTTTCGAAA 59.934 39.130 6.47 6.47 0.00 3.46
4346 4807 2.617308 TGTGGGCGTTAATGTTTTCGAA 59.383 40.909 0.00 0.00 0.00 3.71
4347 4808 2.031857 GTGTGGGCGTTAATGTTTTCGA 60.032 45.455 0.00 0.00 0.00 3.71
4356 4817 0.876777 CTCACACGTGTGGGCGTTAA 60.877 55.000 39.88 22.70 45.65 2.01
4374 4835 2.158871 TGTGGGTGAGTTTTCTAACGCT 60.159 45.455 0.00 0.00 42.61 5.07
4383 4844 1.227853 GAGGCGTGTGGGTGAGTTT 60.228 57.895 0.00 0.00 0.00 2.66
4527 4991 2.263540 GCCCCGACTAGCGAAACA 59.736 61.111 7.94 0.00 44.57 2.83
4535 4999 2.125310 CATTGCACGCCCCGACTA 60.125 61.111 0.00 0.00 0.00 2.59
4549 5013 1.207593 GCGCGACAGCAGTTTCATT 59.792 52.632 12.10 0.00 45.49 2.57
4775 5245 5.395324 CGATGGTGGTATCTTTAGGAGTTGT 60.395 44.000 0.00 0.00 0.00 3.32
4823 5294 2.307392 TGCCCTGATAGCTTTTGGTGTA 59.693 45.455 0.00 0.00 0.00 2.90
4847 5318 1.860641 TCTTAGCGTCTCCCATTGGA 58.139 50.000 3.62 0.00 38.75 3.53
4848 5319 2.555199 CTTCTTAGCGTCTCCCATTGG 58.445 52.381 0.00 0.00 0.00 3.16
4849 5320 2.555199 CCTTCTTAGCGTCTCCCATTG 58.445 52.381 0.00 0.00 0.00 2.82
4850 5321 1.486726 CCCTTCTTAGCGTCTCCCATT 59.513 52.381 0.00 0.00 0.00 3.16
4851 5322 1.123928 CCCTTCTTAGCGTCTCCCAT 58.876 55.000 0.00 0.00 0.00 4.00
4852 5323 0.976073 CCCCTTCTTAGCGTCTCCCA 60.976 60.000 0.00 0.00 0.00 4.37
4853 5324 1.823976 CCCCTTCTTAGCGTCTCCC 59.176 63.158 0.00 0.00 0.00 4.30
4854 5325 1.144276 GCCCCTTCTTAGCGTCTCC 59.856 63.158 0.00 0.00 0.00 3.71
4855 5326 1.227002 CGCCCCTTCTTAGCGTCTC 60.227 63.158 0.00 0.00 44.65 3.36
4856 5327 2.893398 CGCCCCTTCTTAGCGTCT 59.107 61.111 0.00 0.00 44.65 4.18
4860 5331 1.069935 CCTAGCGCCCCTTCTTAGC 59.930 63.158 2.29 0.00 0.00 3.09
4861 5332 1.120530 TTCCTAGCGCCCCTTCTTAG 58.879 55.000 2.29 0.00 0.00 2.18
4862 5333 1.575419 TTTCCTAGCGCCCCTTCTTA 58.425 50.000 2.29 0.00 0.00 2.10
4863 5334 0.919710 ATTTCCTAGCGCCCCTTCTT 59.080 50.000 2.29 0.00 0.00 2.52
4864 5335 1.416772 GTATTTCCTAGCGCCCCTTCT 59.583 52.381 2.29 0.00 0.00 2.85
4865 5336 1.416772 AGTATTTCCTAGCGCCCCTTC 59.583 52.381 2.29 0.00 0.00 3.46
4866 5337 1.508256 AGTATTTCCTAGCGCCCCTT 58.492 50.000 2.29 0.00 0.00 3.95
4867 5338 1.416772 GAAGTATTTCCTAGCGCCCCT 59.583 52.381 2.29 0.00 0.00 4.79
4868 5339 1.880271 GAAGTATTTCCTAGCGCCCC 58.120 55.000 2.29 0.00 0.00 5.80
4878 5349 1.602377 CGATTGGCCGGGAAGTATTTC 59.398 52.381 2.18 0.00 0.00 2.17
4879 5350 1.210967 TCGATTGGCCGGGAAGTATTT 59.789 47.619 2.18 0.00 0.00 1.40
4880 5351 0.834612 TCGATTGGCCGGGAAGTATT 59.165 50.000 2.18 0.00 0.00 1.89
4881 5352 0.106149 GTCGATTGGCCGGGAAGTAT 59.894 55.000 2.18 0.00 0.00 2.12
4882 5353 1.518774 GTCGATTGGCCGGGAAGTA 59.481 57.895 2.18 0.00 0.00 2.24
4883 5354 2.267961 GTCGATTGGCCGGGAAGT 59.732 61.111 2.18 0.00 0.00 3.01
4884 5355 2.890474 CGTCGATTGGCCGGGAAG 60.890 66.667 2.18 0.00 0.00 3.46
4885 5356 4.460683 CCGTCGATTGGCCGGGAA 62.461 66.667 2.18 0.00 38.09 3.97
4887 5358 4.770874 AACCGTCGATTGGCCGGG 62.771 66.667 14.90 0.00 45.85 5.73
4888 5359 3.192922 GAACCGTCGATTGGCCGG 61.193 66.667 9.62 9.62 46.93 6.13
4891 5362 2.813908 AGCGAACCGTCGATTGGC 60.814 61.111 0.00 0.00 45.26 4.52
4899 5370 1.012486 GGAATTGACGAGCGAACCGT 61.012 55.000 0.00 0.00 43.56 4.83
4900 5371 0.736325 AGGAATTGACGAGCGAACCG 60.736 55.000 0.00 0.00 0.00 4.44
4901 5372 0.721718 CAGGAATTGACGAGCGAACC 59.278 55.000 0.00 0.00 0.00 3.62
4902 5373 0.721718 CCAGGAATTGACGAGCGAAC 59.278 55.000 0.00 0.00 0.00 3.95
4903 5374 1.019278 GCCAGGAATTGACGAGCGAA 61.019 55.000 0.00 0.00 0.00 4.70
4904 5375 1.447838 GCCAGGAATTGACGAGCGA 60.448 57.895 0.00 0.00 0.00 4.93
4905 5376 1.021390 AAGCCAGGAATTGACGAGCG 61.021 55.000 0.00 0.00 0.00 5.03
4906 5377 0.729690 GAAGCCAGGAATTGACGAGC 59.270 55.000 0.00 0.00 0.00 5.03
4907 5378 1.002366 CGAAGCCAGGAATTGACGAG 58.998 55.000 0.00 0.00 0.00 4.18
4908 5379 0.391130 CCGAAGCCAGGAATTGACGA 60.391 55.000 0.00 0.00 0.00 4.20
4909 5380 1.369091 CCCGAAGCCAGGAATTGACG 61.369 60.000 0.00 0.00 0.00 4.35
4910 5381 1.657751 GCCCGAAGCCAGGAATTGAC 61.658 60.000 0.00 0.00 34.35 3.18
4911 5382 1.378514 GCCCGAAGCCAGGAATTGA 60.379 57.895 0.00 0.00 34.35 2.57
4912 5383 2.764314 CGCCCGAAGCCAGGAATTG 61.764 63.158 0.00 0.00 38.78 2.32
4913 5384 2.438434 CGCCCGAAGCCAGGAATT 60.438 61.111 0.00 0.00 38.78 2.17
4931 5402 0.108329 ATCCTTTGGCGTCTACACGG 60.108 55.000 0.00 0.00 46.80 4.94
4933 5404 0.727398 GCATCCTTTGGCGTCTACAC 59.273 55.000 0.00 0.00 0.00 2.90
4934 5405 0.613260 AGCATCCTTTGGCGTCTACA 59.387 50.000 0.00 0.00 34.54 2.74
4935 5406 1.666189 GAAGCATCCTTTGGCGTCTAC 59.334 52.381 0.00 0.00 35.95 2.59
4936 5407 1.739035 CGAAGCATCCTTTGGCGTCTA 60.739 52.381 0.00 0.00 36.56 2.59
4937 5408 1.021390 CGAAGCATCCTTTGGCGTCT 61.021 55.000 0.00 0.00 36.56 4.18
4938 5409 1.019278 TCGAAGCATCCTTTGGCGTC 61.019 55.000 0.00 0.00 33.92 5.19
4939 5410 1.003839 TCGAAGCATCCTTTGGCGT 60.004 52.632 0.00 0.00 33.92 5.68
4940 5411 1.717937 CTCGAAGCATCCTTTGGCG 59.282 57.895 0.00 0.00 33.92 5.69
4941 5412 1.431036 GCTCGAAGCATCCTTTGGC 59.569 57.895 2.53 0.00 41.89 4.52
4942 5413 1.717937 CGCTCGAAGCATCCTTTGG 59.282 57.895 7.47 0.00 42.58 3.28
4943 5414 1.061570 GCGCTCGAAGCATCCTTTG 59.938 57.895 0.00 0.00 42.58 2.77
4944 5415 0.674895 AAGCGCTCGAAGCATCCTTT 60.675 50.000 12.06 0.00 42.58 3.11
4945 5416 0.175760 TAAGCGCTCGAAGCATCCTT 59.824 50.000 12.06 10.61 42.58 3.36
4946 5417 0.528684 GTAAGCGCTCGAAGCATCCT 60.529 55.000 12.06 0.00 42.58 3.24
4947 5418 1.491505 GGTAAGCGCTCGAAGCATCC 61.492 60.000 12.06 0.84 42.58 3.51
4948 5419 0.528684 AGGTAAGCGCTCGAAGCATC 60.529 55.000 12.06 0.00 42.58 3.91
4949 5420 0.108138 AAGGTAAGCGCTCGAAGCAT 60.108 50.000 12.06 0.00 42.58 3.79
4950 5421 0.320421 AAAGGTAAGCGCTCGAAGCA 60.320 50.000 12.06 0.00 42.58 3.91
4951 5422 0.796927 AAAAGGTAAGCGCTCGAAGC 59.203 50.000 12.06 9.53 38.02 3.86
4952 5423 1.393883 GGAAAAGGTAAGCGCTCGAAG 59.606 52.381 12.06 0.00 0.00 3.79
4953 5424 1.001633 AGGAAAAGGTAAGCGCTCGAA 59.998 47.619 12.06 0.00 0.00 3.71
4954 5425 0.606604 AGGAAAAGGTAAGCGCTCGA 59.393 50.000 12.06 0.00 0.00 4.04
4955 5426 1.439679 AAGGAAAAGGTAAGCGCTCG 58.560 50.000 12.06 0.00 0.00 5.03
4956 5427 2.812011 TGAAAGGAAAAGGTAAGCGCTC 59.188 45.455 12.06 0.00 0.00 5.03
4957 5428 2.552743 GTGAAAGGAAAAGGTAAGCGCT 59.447 45.455 2.64 2.64 0.00 5.92
4958 5429 2.664698 CGTGAAAGGAAAAGGTAAGCGC 60.665 50.000 0.00 0.00 0.00 5.92
4959 5430 2.095919 CCGTGAAAGGAAAAGGTAAGCG 60.096 50.000 0.00 0.00 0.00 4.68
4960 5431 3.058432 GTCCGTGAAAGGAAAAGGTAAGC 60.058 47.826 0.00 0.00 42.77 3.09
4961 5432 3.185797 CGTCCGTGAAAGGAAAAGGTAAG 59.814 47.826 0.00 0.00 42.77 2.34
4962 5433 3.132925 CGTCCGTGAAAGGAAAAGGTAA 58.867 45.455 0.00 0.00 42.77 2.85
4963 5434 2.364970 TCGTCCGTGAAAGGAAAAGGTA 59.635 45.455 0.00 0.00 42.77 3.08
4964 5435 1.139455 TCGTCCGTGAAAGGAAAAGGT 59.861 47.619 0.00 0.00 42.77 3.50
4965 5436 1.873698 TCGTCCGTGAAAGGAAAAGG 58.126 50.000 0.00 0.00 42.77 3.11
4966 5437 3.062234 GCTATCGTCCGTGAAAGGAAAAG 59.938 47.826 0.00 0.00 42.77 2.27
4967 5438 2.997986 GCTATCGTCCGTGAAAGGAAAA 59.002 45.455 0.00 0.00 42.77 2.29
4968 5439 2.613691 GCTATCGTCCGTGAAAGGAAA 58.386 47.619 0.00 0.00 42.77 3.13
4969 5440 1.468565 CGCTATCGTCCGTGAAAGGAA 60.469 52.381 0.00 0.00 42.77 3.36
4970 5441 0.099968 CGCTATCGTCCGTGAAAGGA 59.900 55.000 0.00 0.00 38.11 3.36
4971 5442 2.578369 CGCTATCGTCCGTGAAAGG 58.422 57.895 0.00 0.00 0.00 3.11
4983 5454 0.317479 ATACAAGGCCCGACGCTATC 59.683 55.000 0.00 0.00 37.74 2.08
4984 5455 0.756903 AATACAAGGCCCGACGCTAT 59.243 50.000 0.00 0.00 37.74 2.97
4985 5456 1.338973 CTAATACAAGGCCCGACGCTA 59.661 52.381 0.00 0.00 37.74 4.26
4986 5457 0.104304 CTAATACAAGGCCCGACGCT 59.896 55.000 0.00 0.00 37.74 5.07
4987 5458 0.103572 TCTAATACAAGGCCCGACGC 59.896 55.000 0.00 0.00 0.00 5.19
4988 5459 2.609737 GGATCTAATACAAGGCCCGACG 60.610 54.545 0.00 0.00 0.00 5.12
4989 5460 2.609737 CGGATCTAATACAAGGCCCGAC 60.610 54.545 0.00 0.00 35.39 4.79
4990 5461 1.616865 CGGATCTAATACAAGGCCCGA 59.383 52.381 0.00 0.00 35.39 5.14
4991 5462 1.616865 TCGGATCTAATACAAGGCCCG 59.383 52.381 0.00 0.00 35.01 6.13
4992 5463 3.764237 TTCGGATCTAATACAAGGCCC 57.236 47.619 0.00 0.00 0.00 5.80
4993 5464 5.305585 TGAATTCGGATCTAATACAAGGCC 58.694 41.667 0.00 0.00 0.00 5.19
4994 5465 6.564125 CGTTGAATTCGGATCTAATACAAGGC 60.564 42.308 0.04 0.00 0.00 4.35
4995 5466 6.564125 GCGTTGAATTCGGATCTAATACAAGG 60.564 42.308 0.04 0.00 0.00 3.61
4996 5467 6.355638 GCGTTGAATTCGGATCTAATACAAG 58.644 40.000 0.04 0.00 0.00 3.16
4997 5468 5.235616 GGCGTTGAATTCGGATCTAATACAA 59.764 40.000 0.04 0.00 0.00 2.41
4998 5469 4.748102 GGCGTTGAATTCGGATCTAATACA 59.252 41.667 0.04 0.00 0.00 2.29
4999 5470 4.989168 AGGCGTTGAATTCGGATCTAATAC 59.011 41.667 0.04 0.00 0.00 1.89
5000 5471 5.209818 AGGCGTTGAATTCGGATCTAATA 57.790 39.130 0.04 0.00 0.00 0.98
5001 5472 4.073293 AGGCGTTGAATTCGGATCTAAT 57.927 40.909 0.04 0.00 0.00 1.73
5002 5473 3.536956 AGGCGTTGAATTCGGATCTAA 57.463 42.857 0.04 0.00 0.00 2.10
5003 5474 3.536956 AAGGCGTTGAATTCGGATCTA 57.463 42.857 0.04 0.00 0.00 1.98
5004 5475 2.403252 AAGGCGTTGAATTCGGATCT 57.597 45.000 0.04 0.00 0.00 2.75
5005 5476 3.171277 CAAAAGGCGTTGAATTCGGATC 58.829 45.455 0.04 0.00 0.00 3.36
5006 5477 2.556622 ACAAAAGGCGTTGAATTCGGAT 59.443 40.909 10.39 0.00 32.59 4.18
5007 5478 1.950909 ACAAAAGGCGTTGAATTCGGA 59.049 42.857 10.39 0.00 32.59 4.55
5008 5479 2.415697 ACAAAAGGCGTTGAATTCGG 57.584 45.000 10.39 0.00 32.59 4.30
5009 5480 3.360758 GCTAACAAAAGGCGTTGAATTCG 59.639 43.478 10.39 0.00 32.59 3.34
5010 5481 3.360758 CGCTAACAAAAGGCGTTGAATTC 59.639 43.478 10.39 0.00 43.28 2.17
5011 5482 3.305110 CGCTAACAAAAGGCGTTGAATT 58.695 40.909 10.39 0.00 43.28 2.17
5012 5483 2.928694 CGCTAACAAAAGGCGTTGAAT 58.071 42.857 10.39 2.76 43.28 2.57
5013 5484 2.392933 CGCTAACAAAAGGCGTTGAA 57.607 45.000 10.39 0.00 43.28 2.69
5019 5490 0.450583 GGTAGGCGCTAACAAAAGGC 59.549 55.000 7.64 0.00 0.00 4.35
5020 5491 1.816074 TGGTAGGCGCTAACAAAAGG 58.184 50.000 7.64 0.00 30.00 3.11
5021 5492 3.427503 CCAATGGTAGGCGCTAACAAAAG 60.428 47.826 7.64 1.72 37.20 2.27
5022 5493 2.490115 CCAATGGTAGGCGCTAACAAAA 59.510 45.455 7.64 0.00 37.20 2.44
5023 5494 2.088423 CCAATGGTAGGCGCTAACAAA 58.912 47.619 7.64 0.00 37.20 2.83
5024 5495 1.279558 TCCAATGGTAGGCGCTAACAA 59.720 47.619 7.64 0.00 37.20 2.83
5025 5496 0.906066 TCCAATGGTAGGCGCTAACA 59.094 50.000 7.64 7.24 38.08 2.41
5026 5497 1.940613 CTTCCAATGGTAGGCGCTAAC 59.059 52.381 7.64 5.66 0.00 2.34
5027 5498 1.834896 TCTTCCAATGGTAGGCGCTAA 59.165 47.619 7.64 0.00 0.00 3.09
5028 5499 1.412710 CTCTTCCAATGGTAGGCGCTA 59.587 52.381 7.64 0.00 0.00 4.26
5029 5500 0.179000 CTCTTCCAATGGTAGGCGCT 59.821 55.000 7.64 0.00 0.00 5.92
5030 5501 0.107654 ACTCTTCCAATGGTAGGCGC 60.108 55.000 6.07 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.