Multiple sequence alignment - TraesCS7D01G325700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G325700 chr7D 100.000 3671 0 0 2870 6540 416234593 416238263 0.000000e+00 6780.0
1 TraesCS7D01G325700 chr7D 100.000 2532 0 0 1 2532 416231724 416234255 0.000000e+00 4676.0
2 TraesCS7D01G325700 chr7D 91.011 178 16 0 528 705 5033788 5033965 2.360000e-59 241.0
3 TraesCS7D01G325700 chr7D 89.655 58 4 2 722 778 591927542 591927486 9.100000e-09 73.1
4 TraesCS7D01G325700 chr7A 96.395 3689 107 8 2870 6540 478499490 478503170 0.000000e+00 6052.0
5 TraesCS7D01G325700 chr7A 97.418 1588 30 5 707 2292 478497180 478498758 0.000000e+00 2695.0
6 TraesCS7D01G325700 chr7A 93.631 314 18 2 232 544 478496871 478497183 9.930000e-128 468.0
7 TraesCS7D01G325700 chr7A 93.333 165 10 1 2346 2510 494786991 494786828 6.550000e-60 243.0
8 TraesCS7D01G325700 chr7A 92.647 68 5 0 4968 5035 478501555 478501622 1.500000e-16 99.0
9 TraesCS7D01G325700 chr7B 95.867 3678 106 10 2882 6540 431659759 431663409 0.000000e+00 5908.0
10 TraesCS7D01G325700 chr7B 96.059 1827 45 13 707 2520 431657458 431659270 0.000000e+00 2950.0
11 TraesCS7D01G325700 chr7B 90.446 314 17 3 232 544 431657160 431657461 1.020000e-107 401.0
12 TraesCS7D01G325700 chr5D 90.958 929 69 11 1426 2348 62296157 62295238 0.000000e+00 1236.0
13 TraesCS7D01G325700 chr5D 94.643 168 9 0 539 706 60139743 60139910 1.810000e-65 261.0
14 TraesCS7D01G325700 chr5A 90.733 928 74 9 1426 2348 52329326 52328406 0.000000e+00 1227.0
15 TraesCS7D01G325700 chr5A 91.954 174 12 2 2346 2519 320214243 320214414 6.550000e-60 243.0
16 TraesCS7D01G325700 chr2A 88.661 926 76 18 5631 6540 727917288 727918200 0.000000e+00 1101.0
17 TraesCS7D01G325700 chr2A 80.321 498 80 16 5632 6118 727244425 727244915 1.730000e-95 361.0
18 TraesCS7D01G325700 chr2A 93.373 166 11 0 540 705 38600979 38600814 5.060000e-61 246.0
19 TraesCS7D01G325700 chr2B 86.943 942 92 20 5619 6540 719292964 719293894 0.000000e+00 1029.0
20 TraesCS7D01G325700 chr2B 79.234 496 89 12 5632 6118 718969045 718969535 3.780000e-87 333.0
21 TraesCS7D01G325700 chr2B 93.373 166 9 1 2346 2511 366017518 366017681 1.820000e-60 244.0
22 TraesCS7D01G325700 chrUn 94.421 233 12 1 1 232 184642759 184642527 2.240000e-94 357.0
23 TraesCS7D01G325700 chr2D 80.120 498 81 16 5632 6118 592790547 592791037 8.070000e-94 355.0
24 TraesCS7D01G325700 chr2D 93.534 232 14 1 1 231 223903280 223903511 1.750000e-90 344.0
25 TraesCS7D01G325700 chr2D 96.386 166 6 0 541 706 604364662 604364827 2.320000e-69 274.0
26 TraesCS7D01G325700 chr2D 93.491 169 11 0 540 708 288620473 288620641 1.090000e-62 252.0
27 TraesCS7D01G325700 chr2D 92.899 169 12 0 541 709 595489434 595489266 5.060000e-61 246.0
28 TraesCS7D01G325700 chr2D 93.373 166 9 1 2346 2511 296364210 296364047 1.820000e-60 244.0
29 TraesCS7D01G325700 chr1D 93.991 233 13 1 1 232 3296428 3296660 1.040000e-92 351.0
30 TraesCS7D01G325700 chr1A 91.880 234 12 7 2 231 589164549 589164319 2.940000e-83 320.0
31 TraesCS7D01G325700 chr1A 91.489 235 13 7 2 232 380077573 380077804 3.810000e-82 316.0
32 TraesCS7D01G325700 chr1A 91.453 234 11 8 2 231 254344791 254345019 4.920000e-81 313.0
33 TraesCS7D01G325700 chr1A 90.678 236 16 5 2 233 440679460 440679693 6.370000e-80 309.0
34 TraesCS7D01G325700 chr1A 89.005 191 15 4 2322 2511 487486484 487486299 1.420000e-56 231.0
35 TraesCS7D01G325700 chr4A 91.453 234 13 7 2 231 500945686 500945456 1.370000e-81 315.0
36 TraesCS7D01G325700 chr3A 91.489 235 10 9 2 231 689075472 689075243 1.370000e-81 315.0
37 TraesCS7D01G325700 chr3A 93.413 167 11 0 541 707 40914890 40915056 1.410000e-61 248.0
38 TraesCS7D01G325700 chr3A 93.902 164 9 1 2347 2510 600921016 600920854 5.060000e-61 246.0
39 TraesCS7D01G325700 chr4D 93.413 167 11 0 540 706 109243702 109243868 1.410000e-61 248.0
40 TraesCS7D01G325700 chr4D 90.909 176 15 1 2337 2512 421331243 421331069 1.100000e-57 235.0
41 TraesCS7D01G325700 chr4D 96.000 50 2 0 722 771 297926444 297926493 1.510000e-11 82.4
42 TraesCS7D01G325700 chr3B 92.941 170 12 0 540 709 190902129 190901960 1.410000e-61 248.0
43 TraesCS7D01G325700 chr3B 92.727 55 3 1 722 776 94450821 94450768 1.960000e-10 78.7
44 TraesCS7D01G325700 chr6D 91.379 174 14 1 2347 2520 90112399 90112227 3.050000e-58 237.0
45 TraesCS7D01G325700 chr5B 84.706 170 15 4 1873 2033 123207954 123208121 6.790000e-35 159.0
46 TraesCS7D01G325700 chr5B 90.476 63 5 1 710 772 689949182 689949243 1.510000e-11 82.4
47 TraesCS7D01G325700 chr5B 94.118 51 1 1 724 772 551400952 551401002 7.030000e-10 76.8
48 TraesCS7D01G325700 chr1B 94.231 52 2 1 722 772 685683476 685683527 1.960000e-10 78.7
49 TraesCS7D01G325700 chr6B 94.000 50 2 1 722 771 346316215 346316167 2.530000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G325700 chr7D 416231724 416238263 6539 False 5728.000000 6780 100.00000 1 6540 2 chr7D.!!$F2 6539
1 TraesCS7D01G325700 chr7A 478496871 478503170 6299 False 2328.500000 6052 95.02275 232 6540 4 chr7A.!!$F1 6308
2 TraesCS7D01G325700 chr7B 431657160 431663409 6249 False 3086.333333 5908 94.12400 232 6540 3 chr7B.!!$F1 6308
3 TraesCS7D01G325700 chr5D 62295238 62296157 919 True 1236.000000 1236 90.95800 1426 2348 1 chr5D.!!$R1 922
4 TraesCS7D01G325700 chr5A 52328406 52329326 920 True 1227.000000 1227 90.73300 1426 2348 1 chr5A.!!$R1 922
5 TraesCS7D01G325700 chr2A 727917288 727918200 912 False 1101.000000 1101 88.66100 5631 6540 1 chr2A.!!$F2 909
6 TraesCS7D01G325700 chr2B 719292964 719293894 930 False 1029.000000 1029 86.94300 5619 6540 1 chr2B.!!$F3 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.033504 TCAGGTCCAGTCTTTGCGTC 59.966 55.000 0.00 0.0 0.00 5.19 F
82 83 0.035820 GACTGCGGGGGTGTTGAATA 60.036 55.000 0.00 0.0 0.00 1.75 F
131 132 0.181350 GGTCCACCTCCTAGCCATTG 59.819 60.000 0.00 0.0 0.00 2.82 F
167 168 0.621609 GCCCACCTTGTACACCCATA 59.378 55.000 0.00 0.0 0.00 2.74 F
1357 1362 1.068741 CCTACCCTACCAACAGATCGC 59.931 57.143 0.00 0.0 0.00 4.58 F
2133 2149 1.748493 GTTGCAAAGTGGTCCTGTTCA 59.252 47.619 0.00 0.0 0.00 3.18 F
3165 3539 3.004106 CCAGAGTTTCAAAGTGCTTCCTG 59.996 47.826 0.00 0.0 0.00 3.86 F
3779 4165 1.006832 CGGAAAATGTGCGGAGGTAG 58.993 55.000 0.00 0.0 37.43 3.18 F
5257 5646 1.338973 CACAAAGCTGGTGCAAGTGAT 59.661 47.619 5.91 0.0 42.74 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1141 1146 0.400213 TTGTTCCTGAGACCGCCAAT 59.600 50.000 0.00 0.0 0.00 3.16 R
1316 1321 0.824759 CGAGGGAGATTCCGAGGTTT 59.175 55.000 0.00 0.0 37.43 3.27 R
1946 1952 4.724399 TGATGTAAAACAGCCTTCCTGAA 58.276 39.130 0.00 0.0 44.64 3.02 R
2038 2046 5.009854 ACTCCACAAACCAACAATTCTTG 57.990 39.130 0.00 0.0 0.00 3.02 R
3192 3566 0.534412 AACCAGGTCAGAGCAGATCG 59.466 55.000 1.66 0.0 0.00 3.69 R
3345 3731 4.037803 AGTGCAATGCAATCACACTAAACA 59.962 37.500 10.44 0.0 39.66 2.83 R
4873 5262 1.672030 CGCAGCTGTGGTTGATCCA 60.672 57.895 19.78 0.0 45.01 3.41 R
5294 5683 1.987807 CTGGACATCCGAGGGCCATT 61.988 60.000 8.38 0.0 39.43 3.16 R
6148 6547 1.153168 GCGGGTGGTGCACATATCT 60.153 57.895 20.43 0.0 35.86 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.709567 GGGACTGCCTACTTCCGT 58.290 61.111 0.00 0.00 0.00 4.69
18 19 1.980844 GGGACTGCCTACTTCCGTT 59.019 57.895 0.00 0.00 0.00 4.44
19 20 0.323957 GGGACTGCCTACTTCCGTTT 59.676 55.000 0.00 0.00 0.00 3.60
20 21 1.271217 GGGACTGCCTACTTCCGTTTT 60.271 52.381 0.00 0.00 0.00 2.43
21 22 2.074576 GGACTGCCTACTTCCGTTTTC 58.925 52.381 0.00 0.00 0.00 2.29
22 23 1.725164 GACTGCCTACTTCCGTTTTCG 59.275 52.381 0.00 0.00 43.67 3.46
36 37 2.414806 GTTTTCGAGGAGTTCAGGTCC 58.585 52.381 0.00 0.00 0.00 4.46
37 38 1.712056 TTTCGAGGAGTTCAGGTCCA 58.288 50.000 0.00 0.00 36.43 4.02
38 39 1.257743 TTCGAGGAGTTCAGGTCCAG 58.742 55.000 0.00 0.00 36.43 3.86
39 40 0.112606 TCGAGGAGTTCAGGTCCAGT 59.887 55.000 0.00 0.00 36.43 4.00
40 41 0.528470 CGAGGAGTTCAGGTCCAGTC 59.472 60.000 0.00 0.00 36.43 3.51
41 42 1.888826 CGAGGAGTTCAGGTCCAGTCT 60.889 57.143 0.00 0.00 36.43 3.24
42 43 2.252714 GAGGAGTTCAGGTCCAGTCTT 58.747 52.381 0.00 0.00 36.43 3.01
43 44 2.635427 GAGGAGTTCAGGTCCAGTCTTT 59.365 50.000 0.00 0.00 36.43 2.52
44 45 2.370189 AGGAGTTCAGGTCCAGTCTTTG 59.630 50.000 0.00 0.00 36.43 2.77
45 46 2.147150 GAGTTCAGGTCCAGTCTTTGC 58.853 52.381 0.00 0.00 0.00 3.68
46 47 0.868406 GTTCAGGTCCAGTCTTTGCG 59.132 55.000 0.00 0.00 0.00 4.85
47 48 0.468226 TTCAGGTCCAGTCTTTGCGT 59.532 50.000 0.00 0.00 0.00 5.24
48 49 0.033504 TCAGGTCCAGTCTTTGCGTC 59.966 55.000 0.00 0.00 0.00 5.19
49 50 0.249868 CAGGTCCAGTCTTTGCGTCA 60.250 55.000 0.00 0.00 0.00 4.35
50 51 0.249911 AGGTCCAGTCTTTGCGTCAC 60.250 55.000 0.00 0.00 0.00 3.67
51 52 1.228657 GGTCCAGTCTTTGCGTCACC 61.229 60.000 0.00 0.00 0.00 4.02
52 53 1.300620 TCCAGTCTTTGCGTCACCG 60.301 57.895 0.00 0.00 37.07 4.94
53 54 2.317609 CCAGTCTTTGCGTCACCGG 61.318 63.158 0.00 0.00 33.68 5.28
54 55 2.665185 AGTCTTTGCGTCACCGGC 60.665 61.111 0.00 0.00 33.68 6.13
55 56 4.072088 GTCTTTGCGTCACCGGCG 62.072 66.667 0.00 0.00 33.68 6.46
56 57 4.287781 TCTTTGCGTCACCGGCGA 62.288 61.111 9.30 0.00 33.68 5.54
57 58 4.072088 CTTTGCGTCACCGGCGAC 62.072 66.667 12.75 12.75 33.68 5.19
76 77 4.003788 CTTCGACTGCGGGGGTGT 62.004 66.667 0.00 0.00 38.28 4.16
77 78 3.530910 CTTCGACTGCGGGGGTGTT 62.531 63.158 0.00 0.00 38.28 3.32
78 79 3.818121 TTCGACTGCGGGGGTGTTG 62.818 63.158 0.00 0.00 38.28 3.33
79 80 4.308458 CGACTGCGGGGGTGTTGA 62.308 66.667 0.00 0.00 0.00 3.18
80 81 2.112297 GACTGCGGGGGTGTTGAA 59.888 61.111 0.00 0.00 0.00 2.69
81 82 1.303317 GACTGCGGGGGTGTTGAAT 60.303 57.895 0.00 0.00 0.00 2.57
82 83 0.035820 GACTGCGGGGGTGTTGAATA 60.036 55.000 0.00 0.00 0.00 1.75
83 84 0.623723 ACTGCGGGGGTGTTGAATAT 59.376 50.000 0.00 0.00 0.00 1.28
84 85 1.841277 ACTGCGGGGGTGTTGAATATA 59.159 47.619 0.00 0.00 0.00 0.86
85 86 2.441750 ACTGCGGGGGTGTTGAATATAT 59.558 45.455 0.00 0.00 0.00 0.86
86 87 2.813754 CTGCGGGGGTGTTGAATATATG 59.186 50.000 0.00 0.00 0.00 1.78
87 88 2.159382 GCGGGGGTGTTGAATATATGG 58.841 52.381 0.00 0.00 0.00 2.74
88 89 2.488347 GCGGGGGTGTTGAATATATGGT 60.488 50.000 0.00 0.00 0.00 3.55
89 90 3.827722 CGGGGGTGTTGAATATATGGTT 58.172 45.455 0.00 0.00 0.00 3.67
90 91 3.568007 CGGGGGTGTTGAATATATGGTTG 59.432 47.826 0.00 0.00 0.00 3.77
91 92 4.542697 GGGGGTGTTGAATATATGGTTGT 58.457 43.478 0.00 0.00 0.00 3.32
92 93 4.340950 GGGGGTGTTGAATATATGGTTGTG 59.659 45.833 0.00 0.00 0.00 3.33
93 94 4.202111 GGGGTGTTGAATATATGGTTGTGC 60.202 45.833 0.00 0.00 0.00 4.57
94 95 4.400884 GGGTGTTGAATATATGGTTGTGCA 59.599 41.667 0.00 0.00 0.00 4.57
95 96 5.068987 GGGTGTTGAATATATGGTTGTGCAT 59.931 40.000 0.00 0.00 0.00 3.96
96 97 5.978919 GGTGTTGAATATATGGTTGTGCATG 59.021 40.000 0.00 0.00 0.00 4.06
97 98 6.405731 GGTGTTGAATATATGGTTGTGCATGT 60.406 38.462 0.00 0.00 0.00 3.21
98 99 7.201776 GGTGTTGAATATATGGTTGTGCATGTA 60.202 37.037 0.00 0.00 0.00 2.29
99 100 8.352201 GTGTTGAATATATGGTTGTGCATGTAT 58.648 33.333 0.00 0.00 0.00 2.29
100 101 9.566432 TGTTGAATATATGGTTGTGCATGTATA 57.434 29.630 0.00 0.00 0.00 1.47
110 111 9.964354 ATGGTTGTGCATGTATATTGTATATCT 57.036 29.630 0.00 0.00 0.00 1.98
111 112 9.791801 TGGTTGTGCATGTATATTGTATATCTT 57.208 29.630 0.00 0.00 0.00 2.40
114 115 9.791801 TTGTGCATGTATATTGTATATCTTGGT 57.208 29.630 0.00 0.00 0.00 3.67
115 116 9.435688 TGTGCATGTATATTGTATATCTTGGTC 57.564 33.333 0.00 0.00 0.00 4.02
116 117 8.883731 GTGCATGTATATTGTATATCTTGGTCC 58.116 37.037 0.00 0.00 0.00 4.46
117 118 8.601546 TGCATGTATATTGTATATCTTGGTCCA 58.398 33.333 0.00 0.00 0.00 4.02
118 119 8.883731 GCATGTATATTGTATATCTTGGTCCAC 58.116 37.037 0.00 0.00 0.00 4.02
119 120 9.383519 CATGTATATTGTATATCTTGGTCCACC 57.616 37.037 0.00 0.00 0.00 4.61
120 121 8.736097 TGTATATTGTATATCTTGGTCCACCT 57.264 34.615 0.00 0.00 36.82 4.00
121 122 8.812972 TGTATATTGTATATCTTGGTCCACCTC 58.187 37.037 0.00 0.00 36.82 3.85
122 123 5.568620 ATTGTATATCTTGGTCCACCTCC 57.431 43.478 0.00 0.00 36.82 4.30
123 124 4.280789 TGTATATCTTGGTCCACCTCCT 57.719 45.455 0.00 0.00 36.82 3.69
124 125 5.412617 TGTATATCTTGGTCCACCTCCTA 57.587 43.478 0.00 0.00 36.82 2.94
125 126 5.394738 TGTATATCTTGGTCCACCTCCTAG 58.605 45.833 0.00 0.00 36.82 3.02
126 127 1.501582 ATCTTGGTCCACCTCCTAGC 58.498 55.000 0.00 0.00 36.82 3.42
127 128 0.617820 TCTTGGTCCACCTCCTAGCC 60.618 60.000 0.00 0.00 36.82 3.93
128 129 0.909610 CTTGGTCCACCTCCTAGCCA 60.910 60.000 0.00 0.00 36.82 4.75
129 130 0.253160 TTGGTCCACCTCCTAGCCAT 60.253 55.000 0.00 0.00 36.82 4.40
130 131 0.253160 TGGTCCACCTCCTAGCCATT 60.253 55.000 0.00 0.00 36.82 3.16
131 132 0.181350 GGTCCACCTCCTAGCCATTG 59.819 60.000 0.00 0.00 0.00 2.82
132 133 0.912486 GTCCACCTCCTAGCCATTGT 59.088 55.000 0.00 0.00 0.00 2.71
133 134 2.116238 GTCCACCTCCTAGCCATTGTA 58.884 52.381 0.00 0.00 0.00 2.41
134 135 2.706190 GTCCACCTCCTAGCCATTGTAT 59.294 50.000 0.00 0.00 0.00 2.29
135 136 3.901844 GTCCACCTCCTAGCCATTGTATA 59.098 47.826 0.00 0.00 0.00 1.47
136 137 4.021016 GTCCACCTCCTAGCCATTGTATAG 60.021 50.000 0.00 0.00 0.00 1.31
137 138 3.904339 CCACCTCCTAGCCATTGTATAGT 59.096 47.826 0.00 0.00 0.00 2.12
138 139 4.348168 CCACCTCCTAGCCATTGTATAGTT 59.652 45.833 0.00 0.00 0.00 2.24
139 140 5.542635 CCACCTCCTAGCCATTGTATAGTTA 59.457 44.000 0.00 0.00 0.00 2.24
140 141 6.042781 CCACCTCCTAGCCATTGTATAGTTAA 59.957 42.308 0.00 0.00 0.00 2.01
141 142 7.155328 CACCTCCTAGCCATTGTATAGTTAAG 58.845 42.308 0.00 0.00 0.00 1.85
142 143 6.270231 ACCTCCTAGCCATTGTATAGTTAAGG 59.730 42.308 0.00 0.00 0.00 2.69
143 144 6.270231 CCTCCTAGCCATTGTATAGTTAAGGT 59.730 42.308 0.00 0.00 0.00 3.50
144 145 7.299246 TCCTAGCCATTGTATAGTTAAGGTC 57.701 40.000 0.00 0.00 0.00 3.85
145 146 6.015688 TCCTAGCCATTGTATAGTTAAGGTCG 60.016 42.308 0.00 0.00 0.00 4.79
146 147 5.864418 AGCCATTGTATAGTTAAGGTCGA 57.136 39.130 0.00 0.00 0.00 4.20
147 148 5.844004 AGCCATTGTATAGTTAAGGTCGAG 58.156 41.667 0.00 0.00 0.00 4.04
148 149 4.989168 GCCATTGTATAGTTAAGGTCGAGG 59.011 45.833 0.00 0.00 0.00 4.63
149 150 4.989168 CCATTGTATAGTTAAGGTCGAGGC 59.011 45.833 0.00 0.00 0.00 4.70
150 151 4.660789 TTGTATAGTTAAGGTCGAGGCC 57.339 45.455 0.00 0.00 0.00 5.19
151 152 2.961062 TGTATAGTTAAGGTCGAGGCCC 59.039 50.000 0.00 0.00 0.00 5.80
152 153 2.170012 ATAGTTAAGGTCGAGGCCCA 57.830 50.000 0.00 0.00 0.00 5.36
153 154 1.188863 TAGTTAAGGTCGAGGCCCAC 58.811 55.000 0.00 0.00 0.00 4.61
154 155 1.078637 GTTAAGGTCGAGGCCCACC 60.079 63.158 0.00 3.03 0.00 4.61
164 165 2.035155 GGCCCACCTTGTACACCC 59.965 66.667 0.00 0.00 0.00 4.61
165 166 2.836187 GGCCCACCTTGTACACCCA 61.836 63.158 0.00 0.00 0.00 4.51
166 167 1.382629 GCCCACCTTGTACACCCAT 59.617 57.895 0.00 0.00 0.00 4.00
167 168 0.621609 GCCCACCTTGTACACCCATA 59.378 55.000 0.00 0.00 0.00 2.74
168 169 1.214424 GCCCACCTTGTACACCCATAT 59.786 52.381 0.00 0.00 0.00 1.78
169 170 2.440253 GCCCACCTTGTACACCCATATA 59.560 50.000 0.00 0.00 0.00 0.86
170 171 3.073946 GCCCACCTTGTACACCCATATAT 59.926 47.826 0.00 0.00 0.00 0.86
171 172 4.287585 GCCCACCTTGTACACCCATATATA 59.712 45.833 0.00 0.00 0.00 0.86
172 173 5.801380 CCCACCTTGTACACCCATATATAC 58.199 45.833 0.00 0.00 0.00 1.47
173 174 5.475719 CCACCTTGTACACCCATATATACG 58.524 45.833 0.00 0.00 0.00 3.06
174 175 5.011329 CCACCTTGTACACCCATATATACGT 59.989 44.000 0.00 0.00 0.00 3.57
175 176 5.924254 CACCTTGTACACCCATATATACGTG 59.076 44.000 0.00 8.95 0.00 4.49
176 177 4.927425 CCTTGTACACCCATATATACGTGC 59.073 45.833 0.00 0.00 0.00 5.34
177 178 4.163458 TGTACACCCATATATACGTGCG 57.837 45.455 0.00 0.00 0.00 5.34
178 179 3.569277 TGTACACCCATATATACGTGCGT 59.431 43.478 0.00 2.05 0.00 5.24
179 180 3.738830 ACACCCATATATACGTGCGTT 57.261 42.857 1.66 0.00 0.00 4.84
180 181 4.852134 ACACCCATATATACGTGCGTTA 57.148 40.909 1.66 0.00 0.00 3.18
181 182 5.395682 ACACCCATATATACGTGCGTTAT 57.604 39.130 1.66 4.10 0.00 1.89
182 183 5.165676 ACACCCATATATACGTGCGTTATG 58.834 41.667 1.66 5.40 0.00 1.90
183 184 4.032445 CACCCATATATACGTGCGTTATGC 59.968 45.833 1.66 0.00 46.70 3.14
195 196 3.169207 GCGTTATGCACCGATCAATAC 57.831 47.619 6.45 0.00 45.45 1.89
196 197 2.542178 GCGTTATGCACCGATCAATACA 59.458 45.455 6.45 0.00 45.45 2.29
197 198 3.186409 GCGTTATGCACCGATCAATACAT 59.814 43.478 6.45 0.00 45.45 2.29
198 199 4.666655 GCGTTATGCACCGATCAATACATC 60.667 45.833 6.45 0.00 45.45 3.06
199 200 4.432892 CGTTATGCACCGATCAATACATCG 60.433 45.833 0.00 0.00 44.45 3.84
210 211 4.277257 TCAATACATCGAGTTGCATTGC 57.723 40.909 0.46 0.46 32.64 3.56
211 212 3.065233 TCAATACATCGAGTTGCATTGCC 59.935 43.478 6.12 0.00 32.64 4.52
212 213 2.106477 TACATCGAGTTGCATTGCCA 57.894 45.000 6.12 0.00 0.00 4.92
213 214 1.246649 ACATCGAGTTGCATTGCCAA 58.753 45.000 6.12 0.00 0.00 4.52
214 215 1.612950 ACATCGAGTTGCATTGCCAAA 59.387 42.857 6.12 0.00 0.00 3.28
215 216 2.035704 ACATCGAGTTGCATTGCCAAAA 59.964 40.909 6.12 0.00 0.00 2.44
216 217 3.255725 CATCGAGTTGCATTGCCAAAAT 58.744 40.909 6.12 0.00 0.00 1.82
217 218 4.082300 ACATCGAGTTGCATTGCCAAAATA 60.082 37.500 6.12 0.00 0.00 1.40
218 219 4.717233 TCGAGTTGCATTGCCAAAATAT 57.283 36.364 6.12 0.00 0.00 1.28
219 220 5.070770 TCGAGTTGCATTGCCAAAATATT 57.929 34.783 6.12 0.00 0.00 1.28
220 221 5.101628 TCGAGTTGCATTGCCAAAATATTC 58.898 37.500 6.12 0.00 0.00 1.75
221 222 5.104374 CGAGTTGCATTGCCAAAATATTCT 58.896 37.500 6.12 0.00 0.00 2.40
222 223 5.230726 CGAGTTGCATTGCCAAAATATTCTC 59.769 40.000 6.12 2.62 0.00 2.87
223 224 6.290294 AGTTGCATTGCCAAAATATTCTCT 57.710 33.333 6.12 0.00 0.00 3.10
224 225 6.335777 AGTTGCATTGCCAAAATATTCTCTC 58.664 36.000 6.12 0.00 0.00 3.20
225 226 6.154021 AGTTGCATTGCCAAAATATTCTCTCT 59.846 34.615 6.12 0.00 0.00 3.10
226 227 6.140303 TGCATTGCCAAAATATTCTCTCTC 57.860 37.500 6.12 0.00 0.00 3.20
227 228 5.653330 TGCATTGCCAAAATATTCTCTCTCA 59.347 36.000 6.12 0.00 0.00 3.27
228 229 6.153170 TGCATTGCCAAAATATTCTCTCTCAA 59.847 34.615 6.12 0.00 0.00 3.02
229 230 6.474751 GCATTGCCAAAATATTCTCTCTCAAC 59.525 38.462 0.00 0.00 0.00 3.18
230 231 7.541162 CATTGCCAAAATATTCTCTCTCAACA 58.459 34.615 0.00 0.00 0.00 3.33
246 247 5.692814 TCTCAACAAAGATGAATTTGCTCG 58.307 37.500 0.00 0.00 42.68 5.03
337 339 7.669722 TGGACTACAAGGAATGCTTTTATCTTT 59.330 33.333 0.00 0.00 0.00 2.52
343 345 7.819415 ACAAGGAATGCTTTTATCTTTAAAGGC 59.181 33.333 15.13 9.69 45.62 4.35
344 346 6.878317 AGGAATGCTTTTATCTTTAAAGGCC 58.122 36.000 15.13 0.00 45.12 5.19
369 371 4.408921 TCACCAAGCTTATATACCTGCAGT 59.591 41.667 13.81 3.45 0.00 4.40
433 435 6.205658 GGCCAAGAGAAATGACTATAATGGTC 59.794 42.308 0.00 0.00 0.00 4.02
436 438 6.102897 AGAGAAATGACTATAATGGTCCGG 57.897 41.667 0.00 0.00 33.22 5.14
506 508 7.514721 TCTTTTTCTTGCTTCTTTAGGACCTA 58.485 34.615 0.00 0.00 0.00 3.08
544 546 9.639601 CTTTCTTTTGAACCTTTCTTTGTACTT 57.360 29.630 0.00 0.00 38.30 2.24
545 547 9.634163 TTTCTTTTGAACCTTTCTTTGTACTTC 57.366 29.630 0.00 0.00 38.30 3.01
546 548 7.768240 TCTTTTGAACCTTTCTTTGTACTTCC 58.232 34.615 0.00 0.00 0.00 3.46
547 549 7.614192 TCTTTTGAACCTTTCTTTGTACTTCCT 59.386 33.333 0.00 0.00 0.00 3.36
548 550 6.937436 TTGAACCTTTCTTTGTACTTCCTC 57.063 37.500 0.00 0.00 0.00 3.71
549 551 5.374071 TGAACCTTTCTTTGTACTTCCTCC 58.626 41.667 0.00 0.00 0.00 4.30
550 552 4.004196 ACCTTTCTTTGTACTTCCTCCG 57.996 45.455 0.00 0.00 0.00 4.63
551 553 3.390311 ACCTTTCTTTGTACTTCCTCCGT 59.610 43.478 0.00 0.00 0.00 4.69
552 554 4.141551 ACCTTTCTTTGTACTTCCTCCGTT 60.142 41.667 0.00 0.00 0.00 4.44
553 555 4.451435 CCTTTCTTTGTACTTCCTCCGTTC 59.549 45.833 0.00 0.00 0.00 3.95
554 556 3.672767 TCTTTGTACTTCCTCCGTTCC 57.327 47.619 0.00 0.00 0.00 3.62
555 557 2.029649 TCTTTGTACTTCCTCCGTTCCG 60.030 50.000 0.00 0.00 0.00 4.30
556 558 1.619654 TTGTACTTCCTCCGTTCCGA 58.380 50.000 0.00 0.00 0.00 4.55
557 559 1.619654 TGTACTTCCTCCGTTCCGAA 58.380 50.000 0.00 0.00 0.00 4.30
558 560 1.962807 TGTACTTCCTCCGTTCCGAAA 59.037 47.619 0.00 0.00 0.00 3.46
559 561 2.564062 TGTACTTCCTCCGTTCCGAAAT 59.436 45.455 0.00 0.00 0.00 2.17
560 562 3.763360 TGTACTTCCTCCGTTCCGAAATA 59.237 43.478 0.00 0.00 0.00 1.40
561 563 4.403432 TGTACTTCCTCCGTTCCGAAATAT 59.597 41.667 0.00 0.00 0.00 1.28
562 564 5.593909 TGTACTTCCTCCGTTCCGAAATATA 59.406 40.000 0.00 0.00 0.00 0.86
563 565 5.603170 ACTTCCTCCGTTCCGAAATATAA 57.397 39.130 0.00 0.00 0.00 0.98
564 566 5.598769 ACTTCCTCCGTTCCGAAATATAAG 58.401 41.667 0.00 0.00 0.00 1.73
565 567 5.128335 ACTTCCTCCGTTCCGAAATATAAGT 59.872 40.000 0.00 0.00 0.00 2.24
566 568 5.192327 TCCTCCGTTCCGAAATATAAGTC 57.808 43.478 0.00 0.00 0.00 3.01
567 569 4.891756 TCCTCCGTTCCGAAATATAAGTCT 59.108 41.667 0.00 0.00 0.00 3.24
568 570 5.361857 TCCTCCGTTCCGAAATATAAGTCTT 59.638 40.000 0.00 0.00 0.00 3.01
569 571 6.047231 CCTCCGTTCCGAAATATAAGTCTTT 58.953 40.000 0.00 0.00 0.00 2.52
570 572 6.537660 CCTCCGTTCCGAAATATAAGTCTTTT 59.462 38.462 0.00 0.00 0.00 2.27
571 573 7.065443 CCTCCGTTCCGAAATATAAGTCTTTTT 59.935 37.037 0.00 0.00 0.00 1.94
572 574 9.090692 CTCCGTTCCGAAATATAAGTCTTTTTA 57.909 33.333 0.00 0.00 0.00 1.52
573 575 9.090692 TCCGTTCCGAAATATAAGTCTTTTTAG 57.909 33.333 0.00 0.00 0.00 1.85
574 576 9.090692 CCGTTCCGAAATATAAGTCTTTTTAGA 57.909 33.333 0.00 0.00 0.00 2.10
600 602 9.796120 ATATTTCAAATAAACCACAACATACGG 57.204 29.630 0.00 0.00 0.00 4.02
601 603 6.879276 TTCAAATAAACCACAACATACGGA 57.121 33.333 0.00 0.00 0.00 4.69
602 604 7.455641 TTCAAATAAACCACAACATACGGAT 57.544 32.000 0.00 0.00 0.00 4.18
603 605 6.847400 TCAAATAAACCACAACATACGGATG 58.153 36.000 5.94 5.94 39.16 3.51
605 607 7.606839 TCAAATAAACCACAACATACGGATGTA 59.393 33.333 15.10 0.00 45.93 2.29
606 608 8.402472 CAAATAAACCACAACATACGGATGTAT 58.598 33.333 15.10 2.23 45.93 2.29
607 609 9.616156 AAATAAACCACAACATACGGATGTATA 57.384 29.630 15.10 0.00 45.93 1.47
608 610 9.787435 AATAAACCACAACATACGGATGTATAT 57.213 29.630 15.10 0.00 45.93 0.86
611 613 9.616156 AAACCACAACATACGGATGTATATAAA 57.384 29.630 15.10 0.00 45.93 1.40
612 614 8.597662 ACCACAACATACGGATGTATATAAAC 57.402 34.615 15.10 0.00 45.93 2.01
613 615 8.205512 ACCACAACATACGGATGTATATAAACA 58.794 33.333 15.10 0.00 45.93 2.83
614 616 9.214957 CCACAACATACGGATGTATATAAACAT 57.785 33.333 15.10 0.00 45.93 2.71
616 618 9.772973 ACAACATACGGATGTATATAAACATGT 57.227 29.630 15.10 8.40 45.93 3.21
646 648 7.440523 AGTGTAGATTCACTCATTTTGTTCC 57.559 36.000 0.00 0.00 44.07 3.62
647 649 6.147821 AGTGTAGATTCACTCATTTTGTTCCG 59.852 38.462 0.00 0.00 44.07 4.30
648 650 5.995282 TGTAGATTCACTCATTTTGTTCCGT 59.005 36.000 0.00 0.00 0.00 4.69
649 651 7.117236 GTGTAGATTCACTCATTTTGTTCCGTA 59.883 37.037 0.00 0.00 35.68 4.02
650 652 7.822334 TGTAGATTCACTCATTTTGTTCCGTAT 59.178 33.333 0.00 0.00 0.00 3.06
651 653 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
652 654 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
653 655 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
654 656 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
655 657 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
656 658 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
657 659 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
658 660 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
659 661 5.640357 TCATTTTGTTCCGTATGTAGTCACC 59.360 40.000 0.00 0.00 0.00 4.02
660 662 4.877378 TTTGTTCCGTATGTAGTCACCT 57.123 40.909 0.00 0.00 0.00 4.00
661 663 5.981088 TTTGTTCCGTATGTAGTCACCTA 57.019 39.130 0.00 0.00 0.00 3.08
662 664 6.534475 TTTGTTCCGTATGTAGTCACCTAT 57.466 37.500 0.00 0.00 0.00 2.57
663 665 6.534475 TTGTTCCGTATGTAGTCACCTATT 57.466 37.500 0.00 0.00 0.00 1.73
664 666 5.898174 TGTTCCGTATGTAGTCACCTATTG 58.102 41.667 0.00 0.00 0.00 1.90
665 667 5.653330 TGTTCCGTATGTAGTCACCTATTGA 59.347 40.000 0.00 0.00 0.00 2.57
666 668 6.153170 TGTTCCGTATGTAGTCACCTATTGAA 59.847 38.462 0.00 0.00 35.39 2.69
667 669 6.778834 TCCGTATGTAGTCACCTATTGAAA 57.221 37.500 0.00 0.00 35.39 2.69
668 670 7.356089 TCCGTATGTAGTCACCTATTGAAAT 57.644 36.000 0.00 0.00 35.39 2.17
669 671 7.431249 TCCGTATGTAGTCACCTATTGAAATC 58.569 38.462 0.00 0.00 35.39 2.17
670 672 7.287005 TCCGTATGTAGTCACCTATTGAAATCT 59.713 37.037 0.00 0.00 35.39 2.40
671 673 7.595502 CCGTATGTAGTCACCTATTGAAATCTC 59.404 40.741 0.00 0.00 35.39 2.75
672 674 8.353684 CGTATGTAGTCACCTATTGAAATCTCT 58.646 37.037 0.00 0.00 35.39 3.10
675 677 9.647918 ATGTAGTCACCTATTGAAATCTCTAGA 57.352 33.333 0.00 0.00 35.39 2.43
676 678 9.475620 TGTAGTCACCTATTGAAATCTCTAGAA 57.524 33.333 0.00 0.00 35.39 2.10
679 681 9.261035 AGTCACCTATTGAAATCTCTAGAAAGA 57.739 33.333 0.00 0.00 35.39 2.52
680 682 9.308318 GTCACCTATTGAAATCTCTAGAAAGAC 57.692 37.037 0.00 0.00 35.39 3.01
681 683 9.261035 TCACCTATTGAAATCTCTAGAAAGACT 57.739 33.333 0.00 0.00 0.00 3.24
682 684 9.883142 CACCTATTGAAATCTCTAGAAAGACTT 57.117 33.333 0.00 0.00 0.00 3.01
696 698 9.595823 TCTAGAAAGACTTATATTTTGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
697 699 9.595823 CTAGAAAGACTTATATTTTGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
698 700 8.494016 AGAAAGACTTATATTTTGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
699 701 7.553044 AGAAAGACTTATATTTTGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
700 702 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
701 703 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
702 704 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
703 705 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
704 706 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
705 707 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
706 708 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
707 709 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
708 710 2.134789 TGGAACGGAGGGAGTACTAC 57.865 55.000 0.00 0.00 0.00 2.73
814 818 5.339177 TGTGACTACGTAAACTCGTGAAAA 58.661 37.500 0.00 0.00 43.93 2.29
836 840 2.168496 GGCGTATCCTATAGAGCACCA 58.832 52.381 0.00 0.00 0.00 4.17
837 841 2.094649 GGCGTATCCTATAGAGCACCAC 60.095 54.545 0.00 0.00 0.00 4.16
838 842 2.557056 GCGTATCCTATAGAGCACCACA 59.443 50.000 0.00 0.00 0.00 4.17
839 843 3.193691 GCGTATCCTATAGAGCACCACAT 59.806 47.826 0.00 0.00 0.00 3.21
840 844 4.322049 GCGTATCCTATAGAGCACCACATT 60.322 45.833 0.00 0.00 0.00 2.71
841 845 5.164233 CGTATCCTATAGAGCACCACATTG 58.836 45.833 0.00 0.00 0.00 2.82
842 846 4.630644 ATCCTATAGAGCACCACATTGG 57.369 45.455 0.00 0.00 45.02 3.16
843 847 2.104792 TCCTATAGAGCACCACATTGGC 59.895 50.000 0.00 0.00 42.67 4.52
1141 1146 1.699054 CCCCGCTGATTCCTCCATGA 61.699 60.000 0.00 0.00 0.00 3.07
1305 1310 2.008329 CTCAACTGCAGCCTCATCTTC 58.992 52.381 15.27 0.00 0.00 2.87
1315 1320 1.476891 GCCTCATCTTCGTCACAGGTA 59.523 52.381 0.00 0.00 0.00 3.08
1316 1321 2.094182 GCCTCATCTTCGTCACAGGTAA 60.094 50.000 0.00 0.00 0.00 2.85
1357 1362 1.068741 CCTACCCTACCAACAGATCGC 59.931 57.143 0.00 0.00 0.00 4.58
1432 1437 6.470235 CGTCATAAAATTCAGTTCTTGGATGC 59.530 38.462 0.00 0.00 0.00 3.91
1920 1926 4.396166 CCTAACAACCTGAATGTCATGTCC 59.604 45.833 0.00 0.00 0.00 4.02
2038 2046 3.560636 TCATAGGTAAAGCTGAAGGCC 57.439 47.619 0.00 0.00 43.05 5.19
2063 2071 6.783708 AGAATTGTTGGTTTGTGGAGTTTA 57.216 33.333 0.00 0.00 0.00 2.01
2070 2078 8.385898 TGTTGGTTTGTGGAGTTTAACTATAG 57.614 34.615 0.00 0.00 0.00 1.31
2133 2149 1.748493 GTTGCAAAGTGGTCCTGTTCA 59.252 47.619 0.00 0.00 0.00 3.18
2374 2391 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2473 2490 8.562892 CATCTGTATGTAGTCCCAATTGAAATC 58.437 37.037 7.12 0.00 0.00 2.17
2479 2496 7.214467 TGTAGTCCCAATTGAAATCTCAAAC 57.786 36.000 7.12 0.00 44.64 2.93
2525 2543 8.383175 AGAGGGAGTAGAACACAAAATTTGATA 58.617 33.333 13.19 0.00 0.00 2.15
2526 2544 8.934023 AGGGAGTAGAACACAAAATTTGATAA 57.066 30.769 13.19 0.00 0.00 1.75
2527 2545 9.014297 AGGGAGTAGAACACAAAATTTGATAAG 57.986 33.333 13.19 2.24 0.00 1.73
2528 2546 8.793592 GGGAGTAGAACACAAAATTTGATAAGT 58.206 33.333 13.19 2.83 0.00 2.24
2972 3341 8.943594 AGGTACCAAATAAAATTGTGACCTTA 57.056 30.769 15.94 0.00 38.98 2.69
2973 3342 9.541884 AGGTACCAAATAAAATTGTGACCTTAT 57.458 29.630 15.94 0.00 38.98 1.73
3057 3431 4.445385 CACAAATAACAAAGCTGCCTTGTC 59.555 41.667 16.26 0.00 0.00 3.18
3087 3461 5.313520 TCAACAACAATACCATGATGCTG 57.686 39.130 0.00 0.00 0.00 4.41
3165 3539 3.004106 CCAGAGTTTCAAAGTGCTTCCTG 59.996 47.826 0.00 0.00 0.00 3.86
3192 3566 9.182933 GTTTCTAGTCCGAGAATGTACATATTC 57.817 37.037 9.21 8.88 35.41 1.75
3325 3711 6.959639 AGTTTCTATTTTTGGACTGCTGAA 57.040 33.333 0.00 0.00 0.00 3.02
3345 3731 9.944376 TGCTGAATCTTAATACTCAGTAAGTTT 57.056 29.630 1.94 0.00 39.55 2.66
3779 4165 1.006832 CGGAAAATGTGCGGAGGTAG 58.993 55.000 0.00 0.00 37.43 3.18
3790 4176 7.875327 ATGTGCGGAGGTAGTTAATTATTTT 57.125 32.000 0.00 0.00 0.00 1.82
3879 4265 7.206981 TCTGCTTTATTTTTCTGTCCTTCTG 57.793 36.000 0.00 0.00 0.00 3.02
4426 4812 1.342819 GGGGATCTCATCAGAAGGTCG 59.657 57.143 0.00 0.00 30.24 4.79
4493 4879 6.427547 CACTAGTCCTATACTGTGGCTACTAC 59.572 46.154 0.64 0.00 39.39 2.73
4535 4921 8.036575 ACCGTAACAGCACAATATCTTAGTTTA 58.963 33.333 0.00 0.00 0.00 2.01
4538 4924 9.079833 GTAACAGCACAATATCTTAGTTTACGA 57.920 33.333 0.00 0.00 0.00 3.43
4539 4925 8.718102 AACAGCACAATATCTTAGTTTACGAT 57.282 30.769 0.00 0.00 0.00 3.73
4540 4926 8.354011 ACAGCACAATATCTTAGTTTACGATC 57.646 34.615 0.00 0.00 0.00 3.69
4873 5262 3.070015 CCTGCAAGTCCCAAAAGTTCATT 59.930 43.478 0.00 0.00 0.00 2.57
5257 5646 1.338973 CACAAAGCTGGTGCAAGTGAT 59.661 47.619 5.91 0.00 42.74 3.06
5272 5661 4.101790 GATGGTTGTGCGCCGGTG 62.102 66.667 11.67 11.67 0.00 4.94
5294 5683 1.450134 GCATCGCCACCAGTCATCA 60.450 57.895 0.00 0.00 0.00 3.07
5300 5689 2.496942 CCACCAGTCATCAATGGCC 58.503 57.895 0.00 0.00 40.45 5.36
5310 5699 0.109342 ATCAATGGCCCTCGGATGTC 59.891 55.000 0.00 0.00 0.00 3.06
5318 5707 2.202797 CTCGGATGTCCAGTGGCG 60.203 66.667 3.51 1.55 35.14 5.69
5334 5723 1.564207 GGCGGAAGTAATGTACCGAC 58.436 55.000 0.00 0.00 46.94 4.79
5340 5729 4.687483 CGGAAGTAATGTACCGACTGTTTT 59.313 41.667 0.00 0.00 46.94 2.43
5362 5751 0.694771 TGGCAGAATCAGAAGCTGGT 59.305 50.000 0.00 0.00 31.51 4.00
5395 5784 1.697432 TCATCTCCTTCACCGGTTGTT 59.303 47.619 2.97 0.00 0.00 2.83
5413 5805 5.048713 GGTTGTTGACAGAAGGAATGGTAAG 60.049 44.000 0.00 0.00 0.00 2.34
5423 5815 2.497273 AGGAATGGTAAGCATGGCAAAC 59.503 45.455 0.00 0.00 0.00 2.93
5603 5999 8.502161 GAATACATTCGTGTAAAGTTTGCTTT 57.498 30.769 5.27 0.00 45.85 3.51
5998 6394 2.362889 CCCACCAGGTTCATGGCC 60.363 66.667 0.00 0.00 44.80 5.36
6328 6742 1.001706 GAACGGCTGTTGTTTCCTTCC 60.002 52.381 17.49 0.00 38.78 3.46
6424 6838 1.734137 GATAGCGAGAACGAGGCCA 59.266 57.895 5.01 0.00 42.66 5.36
6532 6946 2.347490 GCGAAGTTGAGGCCCTGA 59.653 61.111 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.731976 CTGAACTCCTCGAAAACGGAAG 59.268 50.000 0.00 0.00 0.00 3.46
12 13 2.547218 CCTGAACTCCTCGAAAACGGAA 60.547 50.000 0.00 0.00 0.00 4.30
13 14 1.000506 CCTGAACTCCTCGAAAACGGA 59.999 52.381 0.00 0.00 0.00 4.69
14 15 1.270147 ACCTGAACTCCTCGAAAACGG 60.270 52.381 0.00 0.00 0.00 4.44
15 16 2.059541 GACCTGAACTCCTCGAAAACG 58.940 52.381 0.00 0.00 0.00 3.60
16 17 2.224209 TGGACCTGAACTCCTCGAAAAC 60.224 50.000 0.00 0.00 0.00 2.43
17 18 2.037251 CTGGACCTGAACTCCTCGAAAA 59.963 50.000 0.00 0.00 0.00 2.29
18 19 1.618837 CTGGACCTGAACTCCTCGAAA 59.381 52.381 0.00 0.00 0.00 3.46
19 20 1.257743 CTGGACCTGAACTCCTCGAA 58.742 55.000 0.00 0.00 0.00 3.71
20 21 0.112606 ACTGGACCTGAACTCCTCGA 59.887 55.000 5.22 0.00 0.00 4.04
21 22 0.528470 GACTGGACCTGAACTCCTCG 59.472 60.000 5.22 0.00 0.00 4.63
22 23 1.931635 AGACTGGACCTGAACTCCTC 58.068 55.000 5.22 0.00 0.00 3.71
23 24 2.370189 CAAAGACTGGACCTGAACTCCT 59.630 50.000 5.22 0.00 0.00 3.69
24 25 2.772287 CAAAGACTGGACCTGAACTCC 58.228 52.381 5.22 0.00 0.00 3.85
25 26 2.147150 GCAAAGACTGGACCTGAACTC 58.853 52.381 5.22 0.00 0.00 3.01
26 27 1.541233 CGCAAAGACTGGACCTGAACT 60.541 52.381 5.22 1.71 0.00 3.01
27 28 0.868406 CGCAAAGACTGGACCTGAAC 59.132 55.000 5.22 0.00 0.00 3.18
28 29 0.468226 ACGCAAAGACTGGACCTGAA 59.532 50.000 5.22 0.00 0.00 3.02
29 30 0.033504 GACGCAAAGACTGGACCTGA 59.966 55.000 5.22 0.00 0.00 3.86
30 31 0.249868 TGACGCAAAGACTGGACCTG 60.250 55.000 0.00 0.00 0.00 4.00
31 32 0.249911 GTGACGCAAAGACTGGACCT 60.250 55.000 0.00 0.00 0.00 3.85
32 33 1.228657 GGTGACGCAAAGACTGGACC 61.229 60.000 0.00 0.00 0.00 4.46
33 34 2.235546 GGTGACGCAAAGACTGGAC 58.764 57.895 0.00 0.00 0.00 4.02
34 35 4.771127 GGTGACGCAAAGACTGGA 57.229 55.556 0.00 0.00 0.00 3.86
59 60 3.530910 AACACCCCCGCAGTCGAAG 62.531 63.158 0.00 0.00 38.10 3.79
60 61 3.552384 AACACCCCCGCAGTCGAA 61.552 61.111 0.00 0.00 38.10 3.71
61 62 4.308458 CAACACCCCCGCAGTCGA 62.308 66.667 0.00 0.00 38.10 4.20
62 63 3.702284 TATTCAACACCCCCGCAGTCG 62.702 57.143 0.00 0.00 0.00 4.18
63 64 0.035820 TATTCAACACCCCCGCAGTC 60.036 55.000 0.00 0.00 0.00 3.51
64 65 0.623723 ATATTCAACACCCCCGCAGT 59.376 50.000 0.00 0.00 0.00 4.40
65 66 2.631160 TATATTCAACACCCCCGCAG 57.369 50.000 0.00 0.00 0.00 5.18
66 67 2.488167 CCATATATTCAACACCCCCGCA 60.488 50.000 0.00 0.00 0.00 5.69
67 68 2.159382 CCATATATTCAACACCCCCGC 58.841 52.381 0.00 0.00 0.00 6.13
68 69 3.502123 ACCATATATTCAACACCCCCG 57.498 47.619 0.00 0.00 0.00 5.73
69 70 4.340950 CACAACCATATATTCAACACCCCC 59.659 45.833 0.00 0.00 0.00 5.40
70 71 4.202111 GCACAACCATATATTCAACACCCC 60.202 45.833 0.00 0.00 0.00 4.95
71 72 4.400884 TGCACAACCATATATTCAACACCC 59.599 41.667 0.00 0.00 0.00 4.61
72 73 5.574891 TGCACAACCATATATTCAACACC 57.425 39.130 0.00 0.00 0.00 4.16
73 74 6.563422 ACATGCACAACCATATATTCAACAC 58.437 36.000 0.00 0.00 0.00 3.32
74 75 6.772360 ACATGCACAACCATATATTCAACA 57.228 33.333 0.00 0.00 0.00 3.33
84 85 9.964354 AGATATACAATATACATGCACAACCAT 57.036 29.630 0.00 0.00 0.00 3.55
85 86 9.791801 AAGATATACAATATACATGCACAACCA 57.208 29.630 0.00 0.00 0.00 3.67
88 89 9.791801 ACCAAGATATACAATATACATGCACAA 57.208 29.630 0.00 0.00 0.00 3.33
89 90 9.435688 GACCAAGATATACAATATACATGCACA 57.564 33.333 0.00 0.00 0.00 4.57
90 91 8.883731 GGACCAAGATATACAATATACATGCAC 58.116 37.037 0.00 0.00 0.00 4.57
91 92 8.601546 TGGACCAAGATATACAATATACATGCA 58.398 33.333 0.00 0.00 0.00 3.96
92 93 8.883731 GTGGACCAAGATATACAATATACATGC 58.116 37.037 0.00 0.00 0.00 4.06
93 94 9.383519 GGTGGACCAAGATATACAATATACATG 57.616 37.037 0.00 0.00 35.64 3.21
94 95 9.338968 AGGTGGACCAAGATATACAATATACAT 57.661 33.333 0.00 0.00 38.89 2.29
95 96 8.736097 AGGTGGACCAAGATATACAATATACA 57.264 34.615 0.00 0.00 38.89 2.29
96 97 8.258708 GGAGGTGGACCAAGATATACAATATAC 58.741 40.741 0.00 0.00 38.89 1.47
97 98 8.184249 AGGAGGTGGACCAAGATATACAATATA 58.816 37.037 0.00 0.00 38.89 0.86
98 99 7.025620 AGGAGGTGGACCAAGATATACAATAT 58.974 38.462 0.00 0.00 38.89 1.28
99 100 6.390504 AGGAGGTGGACCAAGATATACAATA 58.609 40.000 0.00 0.00 38.89 1.90
100 101 5.227593 AGGAGGTGGACCAAGATATACAAT 58.772 41.667 0.00 0.00 38.89 2.71
101 102 4.631234 AGGAGGTGGACCAAGATATACAA 58.369 43.478 0.00 0.00 38.89 2.41
102 103 4.280789 AGGAGGTGGACCAAGATATACA 57.719 45.455 0.00 0.00 38.89 2.29
103 104 4.221041 GCTAGGAGGTGGACCAAGATATAC 59.779 50.000 0.00 0.00 38.89 1.47
104 105 4.417437 GCTAGGAGGTGGACCAAGATATA 58.583 47.826 0.00 0.00 38.89 0.86
105 106 3.243724 GCTAGGAGGTGGACCAAGATAT 58.756 50.000 0.00 0.00 38.89 1.63
106 107 2.679082 GCTAGGAGGTGGACCAAGATA 58.321 52.381 0.00 0.00 38.89 1.98
107 108 1.501582 GCTAGGAGGTGGACCAAGAT 58.498 55.000 0.00 0.00 38.89 2.40
108 109 0.617820 GGCTAGGAGGTGGACCAAGA 60.618 60.000 0.00 0.00 38.89 3.02
109 110 0.909610 TGGCTAGGAGGTGGACCAAG 60.910 60.000 0.00 0.00 38.89 3.61
110 111 0.253160 ATGGCTAGGAGGTGGACCAA 60.253 55.000 0.00 0.00 38.89 3.67
111 112 0.253160 AATGGCTAGGAGGTGGACCA 60.253 55.000 0.00 0.00 38.89 4.02
112 113 0.181350 CAATGGCTAGGAGGTGGACC 59.819 60.000 0.00 0.00 0.00 4.46
113 114 0.912486 ACAATGGCTAGGAGGTGGAC 59.088 55.000 0.00 0.00 0.00 4.02
114 115 2.561209 TACAATGGCTAGGAGGTGGA 57.439 50.000 0.00 0.00 0.00 4.02
115 116 3.904339 ACTATACAATGGCTAGGAGGTGG 59.096 47.826 0.00 0.00 0.00 4.61
116 117 5.552870 AACTATACAATGGCTAGGAGGTG 57.447 43.478 0.00 0.00 0.00 4.00
117 118 6.270231 CCTTAACTATACAATGGCTAGGAGGT 59.730 42.308 0.00 0.00 0.00 3.85
118 119 6.270231 ACCTTAACTATACAATGGCTAGGAGG 59.730 42.308 0.00 0.00 0.00 4.30
119 120 7.304497 ACCTTAACTATACAATGGCTAGGAG 57.696 40.000 0.00 0.00 0.00 3.69
120 121 6.015688 CGACCTTAACTATACAATGGCTAGGA 60.016 42.308 0.00 0.00 0.00 2.94
121 122 6.015688 TCGACCTTAACTATACAATGGCTAGG 60.016 42.308 0.00 0.00 0.00 3.02
122 123 6.978338 TCGACCTTAACTATACAATGGCTAG 58.022 40.000 0.00 0.00 0.00 3.42
123 124 6.015688 CCTCGACCTTAACTATACAATGGCTA 60.016 42.308 0.00 0.00 0.00 3.93
124 125 5.221461 CCTCGACCTTAACTATACAATGGCT 60.221 44.000 0.00 0.00 0.00 4.75
125 126 4.989168 CCTCGACCTTAACTATACAATGGC 59.011 45.833 0.00 0.00 0.00 4.40
126 127 4.989168 GCCTCGACCTTAACTATACAATGG 59.011 45.833 0.00 0.00 0.00 3.16
127 128 4.989168 GGCCTCGACCTTAACTATACAATG 59.011 45.833 0.00 0.00 0.00 2.82
128 129 4.040095 GGGCCTCGACCTTAACTATACAAT 59.960 45.833 0.84 0.00 0.00 2.71
129 130 3.385755 GGGCCTCGACCTTAACTATACAA 59.614 47.826 0.84 0.00 0.00 2.41
130 131 2.961062 GGGCCTCGACCTTAACTATACA 59.039 50.000 0.84 0.00 0.00 2.29
131 132 2.961062 TGGGCCTCGACCTTAACTATAC 59.039 50.000 4.53 0.00 0.00 1.47
132 133 2.961062 GTGGGCCTCGACCTTAACTATA 59.039 50.000 4.53 0.00 0.00 1.31
133 134 1.761198 GTGGGCCTCGACCTTAACTAT 59.239 52.381 4.53 0.00 0.00 2.12
134 135 1.188863 GTGGGCCTCGACCTTAACTA 58.811 55.000 4.53 0.00 0.00 2.24
135 136 1.551019 GGTGGGCCTCGACCTTAACT 61.551 60.000 4.53 0.00 38.53 2.24
136 137 1.078637 GGTGGGCCTCGACCTTAAC 60.079 63.158 4.53 0.00 38.53 2.01
137 138 3.395630 GGTGGGCCTCGACCTTAA 58.604 61.111 4.53 0.00 38.53 1.85
141 142 2.288025 TACAAGGTGGGCCTCGACC 61.288 63.158 4.53 3.85 46.33 4.79
142 143 1.079336 GTACAAGGTGGGCCTCGAC 60.079 63.158 4.53 0.00 46.33 4.20
143 144 1.534476 TGTACAAGGTGGGCCTCGA 60.534 57.895 4.53 0.00 46.33 4.04
144 145 1.375523 GTGTACAAGGTGGGCCTCG 60.376 63.158 4.53 0.00 46.33 4.63
145 146 1.002502 GGTGTACAAGGTGGGCCTC 60.003 63.158 4.53 0.00 46.33 4.70
147 148 2.035155 GGGTGTACAAGGTGGGCC 59.965 66.667 0.00 0.00 0.00 5.80
148 149 0.621609 TATGGGTGTACAAGGTGGGC 59.378 55.000 0.00 0.00 0.00 5.36
149 150 4.993705 ATATATGGGTGTACAAGGTGGG 57.006 45.455 0.00 0.00 0.00 4.61
150 151 5.011329 ACGTATATATGGGTGTACAAGGTGG 59.989 44.000 0.00 0.00 0.00 4.61
151 152 5.924254 CACGTATATATGGGTGTACAAGGTG 59.076 44.000 0.00 0.00 0.00 4.00
152 153 5.510179 GCACGTATATATGGGTGTACAAGGT 60.510 44.000 15.27 0.00 33.09 3.50
153 154 4.927425 GCACGTATATATGGGTGTACAAGG 59.073 45.833 15.27 0.00 33.09 3.61
154 155 4.619760 CGCACGTATATATGGGTGTACAAG 59.380 45.833 9.25 4.08 33.09 3.16
155 156 4.037803 ACGCACGTATATATGGGTGTACAA 59.962 41.667 19.53 0.00 37.56 2.41
156 157 3.569277 ACGCACGTATATATGGGTGTACA 59.431 43.478 19.53 0.00 37.56 2.90
157 158 4.164822 ACGCACGTATATATGGGTGTAC 57.835 45.455 19.53 0.00 37.56 2.90
158 159 4.852134 AACGCACGTATATATGGGTGTA 57.148 40.909 20.87 0.00 38.30 2.90
159 160 3.738830 AACGCACGTATATATGGGTGT 57.261 42.857 16.11 16.11 40.78 4.16
160 161 4.032445 GCATAACGCACGTATATATGGGTG 59.968 45.833 14.87 14.87 40.73 4.61
161 162 4.178540 GCATAACGCACGTATATATGGGT 58.821 43.478 6.09 3.52 43.16 4.51
162 163 4.772046 GCATAACGCACGTATATATGGG 57.228 45.455 12.65 3.33 41.79 4.00
175 176 2.542178 TGTATTGATCGGTGCATAACGC 59.458 45.455 0.00 0.00 42.89 4.84
176 177 4.432892 CGATGTATTGATCGGTGCATAACG 60.433 45.833 0.00 0.00 41.29 3.18
177 178 4.684242 TCGATGTATTGATCGGTGCATAAC 59.316 41.667 0.00 0.00 44.41 1.89
178 179 4.877282 TCGATGTATTGATCGGTGCATAA 58.123 39.130 0.00 0.00 44.41 1.90
179 180 4.022329 ACTCGATGTATTGATCGGTGCATA 60.022 41.667 0.00 0.00 44.41 3.14
180 181 3.243873 ACTCGATGTATTGATCGGTGCAT 60.244 43.478 0.00 1.36 44.41 3.96
181 182 2.100749 ACTCGATGTATTGATCGGTGCA 59.899 45.455 0.00 0.00 44.41 4.57
182 183 2.743938 ACTCGATGTATTGATCGGTGC 58.256 47.619 0.00 0.00 44.41 5.01
183 184 3.060272 GCAACTCGATGTATTGATCGGTG 60.060 47.826 0.00 0.00 44.41 4.94
184 185 3.123804 GCAACTCGATGTATTGATCGGT 58.876 45.455 0.00 0.00 44.41 4.69
185 186 3.123050 TGCAACTCGATGTATTGATCGG 58.877 45.455 0.00 0.00 44.41 4.18
186 187 4.979564 ATGCAACTCGATGTATTGATCG 57.020 40.909 0.00 0.00 45.43 3.69
187 188 4.908156 GCAATGCAACTCGATGTATTGATC 59.092 41.667 24.86 10.86 39.76 2.92
188 189 4.261322 GGCAATGCAACTCGATGTATTGAT 60.261 41.667 24.86 6.20 39.76 2.57
189 190 3.065233 GGCAATGCAACTCGATGTATTGA 59.935 43.478 24.86 4.64 39.76 2.57
190 191 3.181498 TGGCAATGCAACTCGATGTATTG 60.181 43.478 19.45 19.45 39.76 1.90
191 192 3.016031 TGGCAATGCAACTCGATGTATT 58.984 40.909 7.79 0.00 36.26 1.89
192 193 2.642427 TGGCAATGCAACTCGATGTAT 58.358 42.857 7.79 0.00 0.00 2.29
193 194 2.106477 TGGCAATGCAACTCGATGTA 57.894 45.000 7.79 0.00 0.00 2.29
194 195 1.246649 TTGGCAATGCAACTCGATGT 58.753 45.000 7.79 0.00 0.00 3.06
195 196 2.350899 TTTGGCAATGCAACTCGATG 57.649 45.000 7.79 0.00 0.00 3.84
196 197 3.598019 ATTTTGGCAATGCAACTCGAT 57.402 38.095 7.79 0.00 0.00 3.59
197 198 4.717233 ATATTTTGGCAATGCAACTCGA 57.283 36.364 7.79 0.00 0.00 4.04
198 199 5.104374 AGAATATTTTGGCAATGCAACTCG 58.896 37.500 7.79 0.00 0.00 4.18
199 200 6.335777 AGAGAATATTTTGGCAATGCAACTC 58.664 36.000 7.79 6.73 0.00 3.01
200 201 6.154021 AGAGAGAATATTTTGGCAATGCAACT 59.846 34.615 7.79 0.00 0.00 3.16
201 202 6.335777 AGAGAGAATATTTTGGCAATGCAAC 58.664 36.000 7.79 0.00 0.00 4.17
202 203 6.153170 TGAGAGAGAATATTTTGGCAATGCAA 59.847 34.615 7.79 0.00 0.00 4.08
203 204 5.653330 TGAGAGAGAATATTTTGGCAATGCA 59.347 36.000 7.79 0.00 0.00 3.96
204 205 6.140303 TGAGAGAGAATATTTTGGCAATGC 57.860 37.500 0.00 0.00 0.00 3.56
205 206 7.541162 TGTTGAGAGAGAATATTTTGGCAATG 58.459 34.615 0.00 0.00 0.00 2.82
206 207 7.707624 TGTTGAGAGAGAATATTTTGGCAAT 57.292 32.000 0.00 0.00 0.00 3.56
207 208 7.523293 TTGTTGAGAGAGAATATTTTGGCAA 57.477 32.000 0.00 0.00 0.00 4.52
208 209 7.448161 TCTTTGTTGAGAGAGAATATTTTGGCA 59.552 33.333 0.00 0.00 0.00 4.92
209 210 7.820648 TCTTTGTTGAGAGAGAATATTTTGGC 58.179 34.615 0.00 0.00 0.00 4.52
210 211 9.784680 CATCTTTGTTGAGAGAGAATATTTTGG 57.215 33.333 0.00 0.00 0.00 3.28
217 218 8.027771 GCAAATTCATCTTTGTTGAGAGAGAAT 58.972 33.333 0.00 0.00 38.19 2.40
218 219 7.230108 AGCAAATTCATCTTTGTTGAGAGAGAA 59.770 33.333 0.00 0.00 38.19 2.87
219 220 6.713903 AGCAAATTCATCTTTGTTGAGAGAGA 59.286 34.615 0.00 0.00 38.19 3.10
220 221 6.910995 AGCAAATTCATCTTTGTTGAGAGAG 58.089 36.000 0.00 0.00 38.19 3.20
221 222 6.347969 CGAGCAAATTCATCTTTGTTGAGAGA 60.348 38.462 0.00 0.00 38.19 3.10
222 223 5.793952 CGAGCAAATTCATCTTTGTTGAGAG 59.206 40.000 0.00 0.00 38.19 3.20
223 224 5.335113 CCGAGCAAATTCATCTTTGTTGAGA 60.335 40.000 0.00 0.00 38.19 3.27
224 225 4.855388 CCGAGCAAATTCATCTTTGTTGAG 59.145 41.667 0.00 0.00 38.19 3.02
225 226 4.797471 CCGAGCAAATTCATCTTTGTTGA 58.203 39.130 0.00 0.00 38.19 3.18
226 227 3.365820 GCCGAGCAAATTCATCTTTGTTG 59.634 43.478 0.00 0.00 38.19 3.33
227 228 3.256631 AGCCGAGCAAATTCATCTTTGTT 59.743 39.130 0.00 0.00 38.19 2.83
228 229 2.821969 AGCCGAGCAAATTCATCTTTGT 59.178 40.909 0.00 0.00 38.19 2.83
229 230 3.119743 TGAGCCGAGCAAATTCATCTTTG 60.120 43.478 0.00 0.00 38.79 2.77
230 231 3.084039 TGAGCCGAGCAAATTCATCTTT 58.916 40.909 0.00 0.00 0.00 2.52
239 240 1.333619 GAGTTGTTTGAGCCGAGCAAA 59.666 47.619 0.00 0.00 33.22 3.68
246 247 4.590850 AAATTGAGGAGTTGTTTGAGCC 57.409 40.909 0.00 0.00 0.00 4.70
337 339 2.675658 AAGCTTGGTGAAGGCCTTTA 57.324 45.000 21.54 13.72 0.00 1.85
340 342 4.202472 GGTATATAAGCTTGGTGAAGGCCT 60.202 45.833 9.86 0.00 0.00 5.19
342 344 4.757149 CAGGTATATAAGCTTGGTGAAGGC 59.243 45.833 9.86 0.00 32.16 4.35
343 345 4.757149 GCAGGTATATAAGCTTGGTGAAGG 59.243 45.833 9.86 0.00 32.16 3.46
344 346 5.368145 TGCAGGTATATAAGCTTGGTGAAG 58.632 41.667 9.86 0.00 32.16 3.02
369 371 6.208599 ACTTCATTTCCTCCTTAAATTTGCGA 59.791 34.615 0.00 0.00 0.00 5.10
433 435 2.257286 CTGAAAGCATTGACCGCCGG 62.257 60.000 0.00 0.00 0.00 6.13
436 438 1.806542 TCTTCTGAAAGCATTGACCGC 59.193 47.619 0.00 0.00 32.18 5.68
574 576 9.796120 CCGTATGTTGTGGTTTATTTGAAATAT 57.204 29.630 0.00 0.00 0.00 1.28
575 577 9.011095 TCCGTATGTTGTGGTTTATTTGAAATA 57.989 29.630 0.00 0.00 0.00 1.40
576 578 7.887381 TCCGTATGTTGTGGTTTATTTGAAAT 58.113 30.769 0.00 0.00 0.00 2.17
577 579 7.273320 TCCGTATGTTGTGGTTTATTTGAAA 57.727 32.000 0.00 0.00 0.00 2.69
578 580 6.879276 TCCGTATGTTGTGGTTTATTTGAA 57.121 33.333 0.00 0.00 0.00 2.69
579 581 6.431543 ACATCCGTATGTTGTGGTTTATTTGA 59.568 34.615 0.00 0.00 44.07 2.69
580 582 6.616947 ACATCCGTATGTTGTGGTTTATTTG 58.383 36.000 0.00 0.00 44.07 2.32
581 583 6.827586 ACATCCGTATGTTGTGGTTTATTT 57.172 33.333 0.00 0.00 44.07 1.40
582 584 9.787435 ATATACATCCGTATGTTGTGGTTTATT 57.213 29.630 0.00 0.00 44.07 1.40
585 587 9.616156 TTTATATACATCCGTATGTTGTGGTTT 57.384 29.630 0.00 0.00 44.07 3.27
586 588 9.048446 GTTTATATACATCCGTATGTTGTGGTT 57.952 33.333 0.00 0.00 44.07 3.67
587 589 8.205512 TGTTTATATACATCCGTATGTTGTGGT 58.794 33.333 0.00 0.00 44.07 4.16
588 590 8.596271 TGTTTATATACATCCGTATGTTGTGG 57.404 34.615 0.00 0.00 44.07 4.17
590 592 9.772973 ACATGTTTATATACATCCGTATGTTGT 57.227 29.630 0.00 0.00 44.07 3.32
609 611 9.561069 AGTGAATCTACACTCTAAAACATGTTT 57.439 29.630 18.13 18.13 46.36 2.83
623 625 6.073222 ACGGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
624 626 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
625 627 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
626 628 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
627 629 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
628 630 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
629 631 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
630 632 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
631 633 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
632 634 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
633 635 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
634 636 6.183360 GGTGACTACATACGGAACAAAATGAG 60.183 42.308 0.00 0.00 0.00 2.90
635 637 5.640357 GGTGACTACATACGGAACAAAATGA 59.360 40.000 0.00 0.00 0.00 2.57
636 638 5.642063 AGGTGACTACATACGGAACAAAATG 59.358 40.000 0.00 0.00 40.61 2.32
637 639 5.801380 AGGTGACTACATACGGAACAAAAT 58.199 37.500 0.00 0.00 40.61 1.82
638 640 5.217978 AGGTGACTACATACGGAACAAAA 57.782 39.130 0.00 0.00 40.61 2.44
639 641 4.877378 AGGTGACTACATACGGAACAAA 57.123 40.909 0.00 0.00 40.61 2.83
654 656 9.308318 GTCTTTCTAGAGATTTCAATAGGTGAC 57.692 37.037 0.00 0.00 35.39 3.67
655 657 9.261035 AGTCTTTCTAGAGATTTCAATAGGTGA 57.739 33.333 0.00 0.00 0.00 4.02
656 658 9.883142 AAGTCTTTCTAGAGATTTCAATAGGTG 57.117 33.333 0.00 0.00 0.00 4.00
670 672 9.595823 CCGTTCCAAAATATAAGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
671 673 9.595823 TCCGTTCCAAAATATAAGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
672 674 9.595823 CTCCGTTCCAAAATATAAGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
673 675 7.553044 CCTCCGTTCCAAAATATAAGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
674 676 7.201705 CCCTCCGTTCCAAAATATAAGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
675 677 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
676 678 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
677 679 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
678 680 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
679 681 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
680 682 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
681 683 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
682 684 5.901276 AGTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
683 685 4.720273 AGTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
684 686 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
685 687 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
686 688 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
687 689 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
688 690 2.225091 TGTAGTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
689 691 1.355381 TGTAGTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
690 692 1.747924 GTGTAGTACTCCCTCCGTTCC 59.252 57.143 0.00 0.00 0.00 3.62
691 693 2.720915 AGTGTAGTACTCCCTCCGTTC 58.279 52.381 0.00 0.00 33.17 3.95
692 694 2.895242 AGTGTAGTACTCCCTCCGTT 57.105 50.000 0.00 0.00 33.17 4.44
693 695 4.516652 AATAGTGTAGTACTCCCTCCGT 57.483 45.455 0.00 0.00 40.89 4.69
694 696 8.099537 TCTATAAATAGTGTAGTACTCCCTCCG 58.900 40.741 0.00 0.00 40.89 4.63
695 697 9.978336 ATCTATAAATAGTGTAGTACTCCCTCC 57.022 37.037 0.00 0.00 40.89 4.30
772 776 7.149973 AGTCACAAAATACGCTTACAGTTCTA 58.850 34.615 0.00 0.00 0.00 2.10
836 840 1.614996 TGTTCGGAATGTGCCAATGT 58.385 45.000 0.00 0.00 0.00 2.71
837 841 2.721274 TTGTTCGGAATGTGCCAATG 57.279 45.000 0.00 0.00 0.00 2.82
838 842 3.959535 ATTTGTTCGGAATGTGCCAAT 57.040 38.095 0.00 0.00 0.00 3.16
839 843 3.742433 AATTTGTTCGGAATGTGCCAA 57.258 38.095 0.00 0.00 0.00 4.52
840 844 3.057174 GGTAATTTGTTCGGAATGTGCCA 60.057 43.478 0.00 0.00 0.00 4.92
841 845 3.507786 GGTAATTTGTTCGGAATGTGCC 58.492 45.455 0.00 0.00 0.00 5.01
842 846 3.057174 TGGGTAATTTGTTCGGAATGTGC 60.057 43.478 0.00 0.00 0.00 4.57
843 847 4.457603 TCTGGGTAATTTGTTCGGAATGTG 59.542 41.667 0.00 0.00 0.00 3.21
1141 1146 0.400213 TTGTTCCTGAGACCGCCAAT 59.600 50.000 0.00 0.00 0.00 3.16
1315 1320 1.207329 CGAGGGAGATTCCGAGGTTTT 59.793 52.381 0.00 0.00 37.43 2.43
1316 1321 0.824759 CGAGGGAGATTCCGAGGTTT 59.175 55.000 0.00 0.00 37.43 3.27
1432 1437 6.405176 GCCCCATCTGAAGATAAACAAGAAAG 60.405 42.308 0.00 0.00 32.63 2.62
1946 1952 4.724399 TGATGTAAAACAGCCTTCCTGAA 58.276 39.130 0.00 0.00 44.64 3.02
2038 2046 5.009854 ACTCCACAAACCAACAATTCTTG 57.990 39.130 0.00 0.00 0.00 3.02
2133 2149 8.526147 AGCAAATCACAAGAATTTAAGCTACAT 58.474 29.630 0.00 0.00 0.00 2.29
2333 2350 7.369551 ACGGAGGGAGTATTTTGTAATATGA 57.630 36.000 0.00 0.00 0.00 2.15
2340 2357 2.910977 AGGAACGGAGGGAGTATTTTGT 59.089 45.455 0.00 0.00 0.00 2.83
2374 2391 9.958180 TGTAGTCCATATTGAAATCTCTCAAAA 57.042 29.630 0.00 0.00 38.75 2.44
2378 2395 9.347934 CGTATGTAGTCCATATTGAAATCTCTC 57.652 37.037 0.00 0.00 38.29 3.20
2402 2419 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2451 2468 7.629157 TGAGATTTCAATTGGGACTACATACA 58.371 34.615 5.42 0.00 0.00 2.29
2499 2517 6.601332 TCAAATTTTGTGTTCTACTCCCTCT 58.399 36.000 8.89 0.00 0.00 3.69
2972 3341 8.409358 AGTTCACTGGCAAAATTTTCTAGTAT 57.591 30.769 14.35 4.58 0.00 2.12
2973 3342 7.817418 AGTTCACTGGCAAAATTTTCTAGTA 57.183 32.000 14.35 3.77 0.00 1.82
3087 3461 3.886123 TCTAAATAGTTTGGAGGCAGGC 58.114 45.455 0.00 0.00 0.00 4.85
3136 3510 3.004106 CACTTTGAAACTCTGGCTGAAGG 59.996 47.826 0.00 0.00 0.00 3.46
3142 3516 2.287849 GGAAGCACTTTGAAACTCTGGC 60.288 50.000 0.00 0.00 0.00 4.85
3165 3539 5.320549 TGTACATTCTCGGACTAGAAACC 57.679 43.478 0.00 0.00 38.90 3.27
3192 3566 0.534412 AACCAGGTCAGAGCAGATCG 59.466 55.000 1.66 0.00 0.00 3.69
3345 3731 4.037803 AGTGCAATGCAATCACACTAAACA 59.962 37.500 10.44 0.00 39.66 2.83
3879 4265 9.334693 GACAGAAAACAATAGTCATCAATCAAC 57.665 33.333 0.00 0.00 0.00 3.18
4070 4456 8.819845 AGGATGTATTCATCTGCAGACATATTA 58.180 33.333 20.97 9.46 46.74 0.98
4324 4710 4.647424 TCCATGAACTTTTCGTTGCTTT 57.353 36.364 0.00 0.00 35.56 3.51
4493 4879 5.521010 TGTTACGGTTGAACTTCTGTACTTG 59.479 40.000 0.00 0.00 0.00 3.16
4535 4921 9.832445 AGGTTGACATTTTTATACTATGATCGT 57.168 29.630 0.00 0.00 0.00 3.73
4852 5241 4.053295 CAATGAACTTTTGGGACTTGCAG 58.947 43.478 0.00 0.00 0.00 4.41
4873 5262 1.672030 CGCAGCTGTGGTTGATCCA 60.672 57.895 19.78 0.00 45.01 3.41
5254 5643 4.634703 ACCGGCGCACAACCATCA 62.635 61.111 10.83 0.00 0.00 3.07
5272 5661 2.045926 ACTGGTGGCGATGCTTCC 60.046 61.111 0.00 0.00 0.00 3.46
5294 5683 1.987807 CTGGACATCCGAGGGCCATT 61.988 60.000 8.38 0.00 39.43 3.16
5300 5689 2.187946 GCCACTGGACATCCGAGG 59.812 66.667 0.00 0.00 39.43 4.63
5310 5699 2.277084 GTACATTACTTCCGCCACTGG 58.723 52.381 0.00 0.00 0.00 4.00
5318 5707 5.467735 ACAAAACAGTCGGTACATTACTTCC 59.532 40.000 0.00 0.00 0.00 3.46
5334 5723 4.572985 TCTGATTCTGCCAACAAAACAG 57.427 40.909 0.00 0.00 0.00 3.16
5340 5729 2.156917 CAGCTTCTGATTCTGCCAACA 58.843 47.619 0.00 0.00 32.44 3.33
5362 5751 2.775960 AGGAGATGACAGATCAATGGCA 59.224 45.455 0.00 0.00 43.93 4.92
5395 5784 4.264253 CATGCTTACCATTCCTTCTGTCA 58.736 43.478 0.00 0.00 29.71 3.58
5423 5815 6.259387 TCAGCTTCACTAATGTCTATTGCATG 59.741 38.462 0.00 0.00 0.00 4.06
5998 6394 2.046314 GTGTCGGTGACCATGGGG 60.046 66.667 18.09 0.00 41.29 4.96
6046 6445 3.106407 AAGCTGACGCGCGAACTC 61.106 61.111 39.36 24.30 42.32 3.01
6148 6547 1.153168 GCGGGTGGTGCACATATCT 60.153 57.895 20.43 0.00 35.86 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.