Multiple sequence alignment - TraesCS7D01G324600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G324600 chr7D 100.000 2600 0 0 1 2600 414487305 414489904 0.000000e+00 4802
1 TraesCS7D01G324600 chr7B 95.257 1792 54 14 834 2600 428919753 428921538 0.000000e+00 2809
2 TraesCS7D01G324600 chr7B 91.597 595 40 4 1 586 351900183 351899590 0.000000e+00 813
3 TraesCS7D01G324600 chr7B 91.573 178 15 0 588 765 351899453 351899276 2.000000e-61 246
4 TraesCS7D01G324600 chr7A 93.927 1762 63 18 867 2600 476934672 476936417 0.000000e+00 2621
5 TraesCS7D01G324600 chr7A 93.677 427 18 3 168 585 53683915 53683489 4.720000e-177 630
6 TraesCS7D01G324600 chr7A 91.573 178 15 0 588 765 53683347 53683170 2.000000e-61 246
7 TraesCS7D01G324600 chr7A 94.776 134 6 1 36 168 53684380 53684247 9.430000e-50 207
8 TraesCS7D01G324600 chr3D 95.355 775 25 5 1 765 598644529 598643756 0.000000e+00 1221
9 TraesCS7D01G324600 chr2D 93.950 595 27 3 1 586 448663481 448664075 0.000000e+00 891
10 TraesCS7D01G324600 chr2D 93.258 178 12 0 588 765 448664212 448664389 1.980000e-66 263
11 TraesCS7D01G324600 chr2D 88.889 153 17 0 2403 2555 483785633 483785481 3.420000e-44 189
12 TraesCS7D01G324600 chr2D 84.184 196 29 2 2081 2275 483786126 483785932 3.420000e-44 189
13 TraesCS7D01G324600 chr3B 93.613 595 28 4 1 586 308402833 308403426 0.000000e+00 880
14 TraesCS7D01G324600 chr3B 92.570 323 14 3 270 584 679990699 679991019 3.050000e-124 455
15 TraesCS7D01G324600 chr3B 92.025 326 14 5 270 586 679994952 679995274 5.100000e-122 448
16 TraesCS7D01G324600 chr3B 93.644 236 12 3 40 272 679988790 679989025 1.480000e-92 350
17 TraesCS7D01G324600 chr3B 91.620 179 15 0 587 765 679995398 679995576 5.560000e-62 248
18 TraesCS7D01G324600 chr3B 87.831 189 11 3 588 765 308403566 308403753 7.290000e-51 211
19 TraesCS7D01G324600 chr6A 92.437 595 36 3 1 586 581014004 581014598 0.000000e+00 841
20 TraesCS7D01G324600 chr6A 88.554 166 15 2 604 765 581023384 581023549 5.680000e-47 198
21 TraesCS7D01G324600 chr6B 90.959 365 30 3 1 364 210258452 210258090 3.010000e-134 488
22 TraesCS7D01G324600 chr1A 84.532 278 25 7 322 586 423989261 423988989 2.570000e-65 259
23 TraesCS7D01G324600 chr2B 84.694 196 28 2 2081 2275 568635606 568635412 7.340000e-46 195
24 TraesCS7D01G324600 chr2B 87.582 153 19 0 2403 2555 568635116 568634964 7.390000e-41 178
25 TraesCS7D01G324600 chr2A 84.694 196 28 2 2081 2275 627611144 627610950 7.340000e-46 195
26 TraesCS7D01G324600 chr2A 86.928 153 20 0 2403 2555 627610645 627610493 3.440000e-39 172
27 TraesCS7D01G324600 chr4B 91.803 122 10 0 644 765 32428587 32428466 1.240000e-38 171
28 TraesCS7D01G324600 chr4B 96.667 90 2 1 1 89 564885663 564885574 5.800000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G324600 chr7D 414487305 414489904 2599 False 4802.00 4802 100.00000 1 2600 1 chr7D.!!$F1 2599
1 TraesCS7D01G324600 chr7B 428919753 428921538 1785 False 2809.00 2809 95.25700 834 2600 1 chr7B.!!$F1 1766
2 TraesCS7D01G324600 chr7B 351899276 351900183 907 True 529.50 813 91.58500 1 765 2 chr7B.!!$R1 764
3 TraesCS7D01G324600 chr7A 476934672 476936417 1745 False 2621.00 2621 93.92700 867 2600 1 chr7A.!!$F1 1733
4 TraesCS7D01G324600 chr7A 53683170 53684380 1210 True 361.00 630 93.34200 36 765 3 chr7A.!!$R1 729
5 TraesCS7D01G324600 chr3D 598643756 598644529 773 True 1221.00 1221 95.35500 1 765 1 chr3D.!!$R1 764
6 TraesCS7D01G324600 chr2D 448663481 448664389 908 False 577.00 891 93.60400 1 765 2 chr2D.!!$F1 764
7 TraesCS7D01G324600 chr3B 308402833 308403753 920 False 545.50 880 90.72200 1 765 2 chr3B.!!$F1 764
8 TraesCS7D01G324600 chr3B 679988790 679995576 6786 False 375.25 455 92.46475 40 765 4 chr3B.!!$F2 725
9 TraesCS7D01G324600 chr6A 581014004 581014598 594 False 841.00 841 92.43700 1 586 1 chr6A.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 7251 0.039798 GCATCCTACCGTATTCGCGA 60.04 55.0 3.71 3.71 35.54 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 8482 1.02139 CGAGGTCGCTCCATGCTTTT 61.021 55.0 0.0 0.0 40.11 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 138 4.037446 GCAAACGGATTATAAGGAATGCCA 59.963 41.667 0.00 0.00 36.29 4.92
210 547 6.604795 CCAGTTTCAGGGAAATGATGAACTAT 59.395 38.462 0.00 0.00 31.57 2.12
248 966 5.142061 AGATGAACTTGCAATGCATTCAA 57.858 34.783 22.80 14.87 39.74 2.69
356 2370 7.174772 TGTGCTTGACATACAGATTGTACAAAT 59.825 33.333 13.23 1.33 35.42 2.32
615 7032 0.811616 GAGGGCGCATCTGGTGTAAG 60.812 60.000 10.83 0.00 0.00 2.34
751 7179 4.307432 GCTGGATTTAGCTATACTGCGAA 58.693 43.478 0.00 0.00 40.52 4.70
765 7193 1.802960 CTGCGAAGACTGTTCTGCAAT 59.197 47.619 0.00 0.00 31.57 3.56
766 7194 1.532437 TGCGAAGACTGTTCTGCAATG 59.468 47.619 0.00 0.00 29.98 2.82
767 7195 1.727213 GCGAAGACTGTTCTGCAATGC 60.727 52.381 0.00 0.00 29.98 3.56
768 7196 1.802960 CGAAGACTGTTCTGCAATGCT 59.197 47.619 6.82 0.00 29.98 3.79
769 7197 2.225019 CGAAGACTGTTCTGCAATGCTT 59.775 45.455 6.82 0.00 29.98 3.91
770 7198 3.562505 GAAGACTGTTCTGCAATGCTTG 58.437 45.455 6.82 0.00 29.98 4.01
771 7199 2.854963 AGACTGTTCTGCAATGCTTGA 58.145 42.857 6.82 1.91 0.00 3.02
772 7200 3.418995 AGACTGTTCTGCAATGCTTGAT 58.581 40.909 6.82 0.00 0.00 2.57
773 7201 4.582869 AGACTGTTCTGCAATGCTTGATA 58.417 39.130 6.82 0.00 0.00 2.15
774 7202 4.394300 AGACTGTTCTGCAATGCTTGATAC 59.606 41.667 6.82 6.90 0.00 2.24
775 7203 4.074259 ACTGTTCTGCAATGCTTGATACA 58.926 39.130 6.82 10.36 0.00 2.29
776 7204 4.083110 ACTGTTCTGCAATGCTTGATACAC 60.083 41.667 6.82 1.63 0.00 2.90
777 7205 3.819902 TGTTCTGCAATGCTTGATACACA 59.180 39.130 6.82 4.11 0.00 3.72
778 7206 4.161333 GTTCTGCAATGCTTGATACACAC 58.839 43.478 6.82 0.00 0.00 3.82
779 7207 3.678289 TCTGCAATGCTTGATACACACT 58.322 40.909 6.82 0.00 0.00 3.55
780 7208 3.686241 TCTGCAATGCTTGATACACACTC 59.314 43.478 6.82 0.00 0.00 3.51
781 7209 2.749076 TGCAATGCTTGATACACACTCC 59.251 45.455 6.82 0.00 0.00 3.85
782 7210 2.098117 GCAATGCTTGATACACACTCCC 59.902 50.000 0.00 0.00 0.00 4.30
783 7211 3.346315 CAATGCTTGATACACACTCCCA 58.654 45.455 0.00 0.00 0.00 4.37
784 7212 3.719268 ATGCTTGATACACACTCCCAA 57.281 42.857 0.00 0.00 0.00 4.12
785 7213 2.778299 TGCTTGATACACACTCCCAAC 58.222 47.619 0.00 0.00 0.00 3.77
786 7214 2.105649 TGCTTGATACACACTCCCAACA 59.894 45.455 0.00 0.00 0.00 3.33
787 7215 3.244875 TGCTTGATACACACTCCCAACAT 60.245 43.478 0.00 0.00 0.00 2.71
788 7216 4.019771 TGCTTGATACACACTCCCAACATA 60.020 41.667 0.00 0.00 0.00 2.29
789 7217 5.126067 GCTTGATACACACTCCCAACATAT 58.874 41.667 0.00 0.00 0.00 1.78
790 7218 5.237344 GCTTGATACACACTCCCAACATATC 59.763 44.000 0.00 0.00 0.00 1.63
791 7219 5.948742 TGATACACACTCCCAACATATCA 57.051 39.130 0.00 0.00 0.00 2.15
792 7220 6.306643 TGATACACACTCCCAACATATCAA 57.693 37.500 0.00 0.00 0.00 2.57
793 7221 6.899089 TGATACACACTCCCAACATATCAAT 58.101 36.000 0.00 0.00 0.00 2.57
794 7222 6.767423 TGATACACACTCCCAACATATCAATG 59.233 38.462 0.00 0.00 39.17 2.82
795 7223 5.178096 ACACACTCCCAACATATCAATGA 57.822 39.130 0.00 0.00 36.54 2.57
796 7224 5.569355 ACACACTCCCAACATATCAATGAA 58.431 37.500 0.00 0.00 36.54 2.57
797 7225 6.009589 ACACACTCCCAACATATCAATGAAA 58.990 36.000 0.00 0.00 36.54 2.69
798 7226 6.493115 ACACACTCCCAACATATCAATGAAAA 59.507 34.615 0.00 0.00 36.54 2.29
799 7227 7.031372 CACACTCCCAACATATCAATGAAAAG 58.969 38.462 0.00 0.00 36.54 2.27
800 7228 6.947733 ACACTCCCAACATATCAATGAAAAGA 59.052 34.615 0.00 0.00 36.54 2.52
801 7229 7.616935 ACACTCCCAACATATCAATGAAAAGAT 59.383 33.333 0.00 0.00 36.54 2.40
802 7230 9.123902 CACTCCCAACATATCAATGAAAAGATA 57.876 33.333 0.00 0.00 36.54 1.98
803 7231 9.125026 ACTCCCAACATATCAATGAAAAGATAC 57.875 33.333 0.00 0.00 36.54 2.24
804 7232 8.153479 TCCCAACATATCAATGAAAAGATACG 57.847 34.615 0.00 0.00 36.54 3.06
805 7233 6.857964 CCCAACATATCAATGAAAAGATACGC 59.142 38.462 0.00 0.00 36.54 4.42
806 7234 7.416817 CCAACATATCAATGAAAAGATACGCA 58.583 34.615 0.00 0.00 36.54 5.24
807 7235 8.077991 CCAACATATCAATGAAAAGATACGCAT 58.922 33.333 0.00 0.00 36.54 4.73
808 7236 9.110617 CAACATATCAATGAAAAGATACGCATC 57.889 33.333 0.00 0.00 36.54 3.91
809 7237 7.810658 ACATATCAATGAAAAGATACGCATCC 58.189 34.615 0.00 0.00 36.54 3.51
810 7238 7.663081 ACATATCAATGAAAAGATACGCATCCT 59.337 33.333 0.00 0.00 36.54 3.24
811 7239 9.154847 CATATCAATGAAAAGATACGCATCCTA 57.845 33.333 0.00 0.00 34.84 2.94
812 7240 6.844696 TCAATGAAAAGATACGCATCCTAC 57.155 37.500 0.00 0.00 0.00 3.18
813 7241 5.758296 TCAATGAAAAGATACGCATCCTACC 59.242 40.000 0.00 0.00 0.00 3.18
814 7242 3.713288 TGAAAAGATACGCATCCTACCG 58.287 45.455 0.00 0.00 0.00 4.02
815 7243 3.131577 TGAAAAGATACGCATCCTACCGT 59.868 43.478 0.00 0.00 41.11 4.83
816 7244 4.338964 TGAAAAGATACGCATCCTACCGTA 59.661 41.667 0.00 0.00 43.10 4.02
818 7246 5.464030 AAAGATACGCATCCTACCGTATT 57.536 39.130 7.06 0.00 46.86 1.89
819 7247 4.698583 AGATACGCATCCTACCGTATTC 57.301 45.455 7.06 2.33 46.86 1.75
820 7248 2.975410 TACGCATCCTACCGTATTCG 57.025 50.000 0.00 0.00 38.75 3.34
821 7249 0.318445 ACGCATCCTACCGTATTCGC 60.318 55.000 0.00 0.00 35.69 4.70
822 7250 1.334992 CGCATCCTACCGTATTCGCG 61.335 60.000 0.00 0.00 35.54 5.87
823 7251 0.039798 GCATCCTACCGTATTCGCGA 60.040 55.000 3.71 3.71 35.54 5.87
824 7252 1.601162 GCATCCTACCGTATTCGCGAA 60.601 52.381 25.66 25.66 35.54 4.70
825 7253 2.734670 CATCCTACCGTATTCGCGAAA 58.265 47.619 27.23 12.42 35.54 3.46
826 7254 2.937469 TCCTACCGTATTCGCGAAAA 57.063 45.000 27.23 3.73 35.54 2.29
827 7255 2.801063 TCCTACCGTATTCGCGAAAAG 58.199 47.619 27.23 18.58 35.54 2.27
828 7256 2.423185 TCCTACCGTATTCGCGAAAAGA 59.577 45.455 27.23 11.51 35.54 2.52
829 7257 3.119531 TCCTACCGTATTCGCGAAAAGAA 60.120 43.478 27.23 9.01 35.54 2.52
830 7258 3.613737 CCTACCGTATTCGCGAAAAGAAA 59.386 43.478 27.23 9.12 35.54 2.52
831 7259 4.091800 CCTACCGTATTCGCGAAAAGAAAA 59.908 41.667 27.23 9.64 35.54 2.29
832 7260 4.061570 ACCGTATTCGCGAAAAGAAAAG 57.938 40.909 27.23 12.99 35.54 2.27
940 7370 4.327627 GGAAGAAAGCTAAGCTAACAGACG 59.672 45.833 0.00 0.00 38.25 4.18
1299 7729 4.687215 GAGCACAGCGAGGTGGCA 62.687 66.667 14.56 0.00 39.19 4.92
1658 8111 8.196771 TCTGCTTTGCATTTCTTTCTTTCTTTA 58.803 29.630 0.00 0.00 38.13 1.85
1920 8375 2.296471 ACGAACACCTTACACCAGAGAG 59.704 50.000 0.00 0.00 0.00 3.20
1938 8406 5.945191 CAGAGAGCAGGAGTATATGAGATGA 59.055 44.000 0.00 0.00 0.00 2.92
1939 8407 6.094464 CAGAGAGCAGGAGTATATGAGATGAG 59.906 46.154 0.00 0.00 0.00 2.90
1940 8408 6.012596 AGAGAGCAGGAGTATATGAGATGAGA 60.013 42.308 0.00 0.00 0.00 3.27
1941 8409 6.734532 AGAGCAGGAGTATATGAGATGAGAT 58.265 40.000 0.00 0.00 0.00 2.75
1942 8410 6.604396 AGAGCAGGAGTATATGAGATGAGATG 59.396 42.308 0.00 0.00 0.00 2.90
1943 8411 5.657745 AGCAGGAGTATATGAGATGAGATGG 59.342 44.000 0.00 0.00 0.00 3.51
1944 8412 5.681954 GCAGGAGTATATGAGATGAGATGGC 60.682 48.000 0.00 0.00 0.00 4.40
1945 8413 4.644234 AGGAGTATATGAGATGAGATGGCG 59.356 45.833 0.00 0.00 0.00 5.69
1948 8416 2.738013 TATGAGATGAGATGGCGCAG 57.262 50.000 10.83 0.00 0.00 5.18
1949 8417 1.046204 ATGAGATGAGATGGCGCAGA 58.954 50.000 10.83 0.00 0.00 4.26
1950 8418 0.826062 TGAGATGAGATGGCGCAGAA 59.174 50.000 10.83 0.00 0.00 3.02
1952 8420 1.865970 GAGATGAGATGGCGCAGAAAG 59.134 52.381 10.83 0.00 0.00 2.62
1953 8421 0.307146 GATGAGATGGCGCAGAAAGC 59.693 55.000 10.83 0.00 40.87 3.51
1955 8423 1.300971 TGAGATGGCGCAGAAAGCAC 61.301 55.000 10.83 0.00 46.13 4.40
1956 8424 1.300971 GAGATGGCGCAGAAAGCACA 61.301 55.000 10.83 0.00 46.13 4.57
1957 8425 0.890542 AGATGGCGCAGAAAGCACAA 60.891 50.000 10.83 0.00 46.13 3.33
1958 8426 0.171903 GATGGCGCAGAAAGCACAAT 59.828 50.000 10.83 0.00 46.13 2.71
1959 8427 0.171903 ATGGCGCAGAAAGCACAATC 59.828 50.000 10.83 0.00 46.13 2.67
1960 8428 1.512734 GGCGCAGAAAGCACAATCG 60.513 57.895 10.83 0.00 46.13 3.34
1983 8451 6.933130 CGATGATCAAATCGCAGTAAAGTAA 58.067 36.000 0.00 0.00 42.57 2.24
2101 8575 1.820481 CGGAGAGGAGGACGAGGAC 60.820 68.421 0.00 0.00 0.00 3.85
2273 8747 2.327343 CGTCACCAGCACCACCATG 61.327 63.158 0.00 0.00 0.00 3.66
2305 8779 2.124653 GAGCAGCAGCAGCCTGAT 60.125 61.111 6.10 0.00 45.49 2.90
2318 8792 3.197790 CTGATGCCGGTCGCCTTG 61.198 66.667 1.90 0.00 36.24 3.61
2351 8825 1.443828 GACGATGGAGAAGGGGAGC 59.556 63.158 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 966 7.867403 CACTTTGCATTGTCCAACTTAACTTAT 59.133 33.333 0.00 0.00 0.00 1.73
495 6767 5.395990 GGTTCTTCTATCCACGTTCCCAATA 60.396 44.000 0.00 0.00 0.00 1.90
615 7032 1.610673 TCTCTGTGCTGGTCCCTCC 60.611 63.158 0.00 0.00 0.00 4.30
765 7193 2.105649 TGTTGGGAGTGTGTATCAAGCA 59.894 45.455 0.00 0.00 0.00 3.91
766 7194 2.778299 TGTTGGGAGTGTGTATCAAGC 58.222 47.619 0.00 0.00 0.00 4.01
767 7195 6.348498 TGATATGTTGGGAGTGTGTATCAAG 58.652 40.000 0.00 0.00 0.00 3.02
768 7196 6.306643 TGATATGTTGGGAGTGTGTATCAA 57.693 37.500 0.00 0.00 0.00 2.57
769 7197 5.948742 TGATATGTTGGGAGTGTGTATCA 57.051 39.130 0.00 0.00 0.00 2.15
770 7198 6.992123 TCATTGATATGTTGGGAGTGTGTATC 59.008 38.462 0.00 0.00 33.34 2.24
771 7199 6.899089 TCATTGATATGTTGGGAGTGTGTAT 58.101 36.000 0.00 0.00 33.34 2.29
772 7200 6.306643 TCATTGATATGTTGGGAGTGTGTA 57.693 37.500 0.00 0.00 33.34 2.90
773 7201 5.178096 TCATTGATATGTTGGGAGTGTGT 57.822 39.130 0.00 0.00 33.34 3.72
774 7202 6.513806 TTTCATTGATATGTTGGGAGTGTG 57.486 37.500 0.00 0.00 33.34 3.82
775 7203 6.947733 TCTTTTCATTGATATGTTGGGAGTGT 59.052 34.615 0.00 0.00 33.34 3.55
776 7204 7.395190 TCTTTTCATTGATATGTTGGGAGTG 57.605 36.000 0.00 0.00 33.34 3.51
777 7205 9.125026 GTATCTTTTCATTGATATGTTGGGAGT 57.875 33.333 0.00 0.00 33.34 3.85
778 7206 8.285394 CGTATCTTTTCATTGATATGTTGGGAG 58.715 37.037 0.00 0.00 33.34 4.30
779 7207 7.255104 GCGTATCTTTTCATTGATATGTTGGGA 60.255 37.037 0.00 0.00 35.64 4.37
780 7208 6.857964 GCGTATCTTTTCATTGATATGTTGGG 59.142 38.462 0.00 0.00 35.64 4.12
781 7209 7.416817 TGCGTATCTTTTCATTGATATGTTGG 58.583 34.615 0.00 0.00 35.64 3.77
782 7210 9.110617 GATGCGTATCTTTTCATTGATATGTTG 57.889 33.333 6.21 0.00 35.64 3.33
783 7211 8.292448 GGATGCGTATCTTTTCATTGATATGTT 58.708 33.333 13.38 0.00 35.64 2.71
784 7212 7.663081 AGGATGCGTATCTTTTCATTGATATGT 59.337 33.333 13.38 0.00 35.64 2.29
785 7213 8.037382 AGGATGCGTATCTTTTCATTGATATG 57.963 34.615 13.38 0.00 36.06 1.78
786 7214 9.155975 GTAGGATGCGTATCTTTTCATTGATAT 57.844 33.333 13.38 0.00 33.68 1.63
787 7215 7.602644 GGTAGGATGCGTATCTTTTCATTGATA 59.397 37.037 13.38 0.00 33.68 2.15
788 7216 6.428159 GGTAGGATGCGTATCTTTTCATTGAT 59.572 38.462 13.38 0.00 33.68 2.57
789 7217 5.758296 GGTAGGATGCGTATCTTTTCATTGA 59.242 40.000 13.38 0.00 33.68 2.57
790 7218 5.333339 CGGTAGGATGCGTATCTTTTCATTG 60.333 44.000 13.38 0.00 33.68 2.82
791 7219 4.750098 CGGTAGGATGCGTATCTTTTCATT 59.250 41.667 13.38 0.00 33.68 2.57
792 7220 4.202223 ACGGTAGGATGCGTATCTTTTCAT 60.202 41.667 13.38 0.00 33.68 2.57
793 7221 3.131577 ACGGTAGGATGCGTATCTTTTCA 59.868 43.478 13.38 0.00 33.68 2.69
794 7222 3.714391 ACGGTAGGATGCGTATCTTTTC 58.286 45.455 13.38 3.24 33.68 2.29
795 7223 3.814005 ACGGTAGGATGCGTATCTTTT 57.186 42.857 13.38 2.72 33.68 2.27
796 7224 5.464030 AATACGGTAGGATGCGTATCTTT 57.536 39.130 13.38 5.06 33.68 2.52
797 7225 4.379186 CGAATACGGTAGGATGCGTATCTT 60.379 45.833 13.38 8.42 33.33 2.40
798 7226 3.126514 CGAATACGGTAGGATGCGTATCT 59.873 47.826 13.38 2.50 33.33 1.98
799 7227 3.423571 CGAATACGGTAGGATGCGTATC 58.576 50.000 4.73 4.73 35.72 2.24
800 7228 2.415090 GCGAATACGGTAGGATGCGTAT 60.415 50.000 0.00 0.00 40.15 3.06
801 7229 1.069022 GCGAATACGGTAGGATGCGTA 60.069 52.381 0.00 0.00 40.15 4.42
802 7230 0.318445 GCGAATACGGTAGGATGCGT 60.318 55.000 0.00 0.00 40.15 5.24
803 7231 1.334992 CGCGAATACGGTAGGATGCG 61.335 60.000 0.00 10.77 40.15 4.73
804 7232 0.039798 TCGCGAATACGGTAGGATGC 60.040 55.000 6.20 0.00 40.15 3.91
805 7233 2.410785 TTCGCGAATACGGTAGGATG 57.589 50.000 19.38 0.00 40.15 3.51
806 7234 3.067180 TCTTTTCGCGAATACGGTAGGAT 59.933 43.478 24.05 0.00 40.15 3.24
807 7235 2.423185 TCTTTTCGCGAATACGGTAGGA 59.577 45.455 24.05 9.53 40.15 2.94
808 7236 2.801063 TCTTTTCGCGAATACGGTAGG 58.199 47.619 24.05 7.07 40.15 3.18
809 7237 4.828291 TTTCTTTTCGCGAATACGGTAG 57.172 40.909 24.05 12.65 40.15 3.18
810 7238 4.685628 ACTTTTCTTTTCGCGAATACGGTA 59.314 37.500 24.05 2.99 40.15 4.02
811 7239 3.495753 ACTTTTCTTTTCGCGAATACGGT 59.504 39.130 24.05 12.03 40.15 4.83
812 7240 4.061570 ACTTTTCTTTTCGCGAATACGG 57.938 40.909 24.05 12.67 40.15 4.02
813 7241 5.222488 GCTTACTTTTCTTTTCGCGAATACG 59.778 40.000 24.05 13.69 42.93 3.06
814 7242 6.246540 CAGCTTACTTTTCTTTTCGCGAATAC 59.753 38.462 24.05 1.91 0.00 1.89
815 7243 6.146510 TCAGCTTACTTTTCTTTTCGCGAATA 59.853 34.615 24.05 17.24 0.00 1.75
816 7244 5.049680 TCAGCTTACTTTTCTTTTCGCGAAT 60.050 36.000 24.05 7.50 0.00 3.34
817 7245 4.271533 TCAGCTTACTTTTCTTTTCGCGAA 59.728 37.500 19.38 19.38 0.00 4.70
818 7246 3.805422 TCAGCTTACTTTTCTTTTCGCGA 59.195 39.130 3.71 3.71 0.00 5.87
819 7247 4.128554 TCAGCTTACTTTTCTTTTCGCG 57.871 40.909 0.00 0.00 0.00 5.87
820 7248 5.971792 AGTTTCAGCTTACTTTTCTTTTCGC 59.028 36.000 0.00 0.00 0.00 4.70
821 7249 8.336080 ACTAGTTTCAGCTTACTTTTCTTTTCG 58.664 33.333 0.00 0.00 0.00 3.46
823 7251 9.788960 CAACTAGTTTCAGCTTACTTTTCTTTT 57.211 29.630 5.07 0.00 0.00 2.27
824 7252 7.915923 GCAACTAGTTTCAGCTTACTTTTCTTT 59.084 33.333 5.07 0.00 0.00 2.52
825 7253 7.418408 GCAACTAGTTTCAGCTTACTTTTCTT 58.582 34.615 5.07 0.00 0.00 2.52
826 7254 6.292919 CGCAACTAGTTTCAGCTTACTTTTCT 60.293 38.462 5.07 0.00 0.00 2.52
827 7255 5.846473 CGCAACTAGTTTCAGCTTACTTTTC 59.154 40.000 5.07 0.00 0.00 2.29
828 7256 5.296035 ACGCAACTAGTTTCAGCTTACTTTT 59.704 36.000 5.07 0.00 0.00 2.27
829 7257 4.814771 ACGCAACTAGTTTCAGCTTACTTT 59.185 37.500 5.07 0.00 0.00 2.66
830 7258 4.377897 ACGCAACTAGTTTCAGCTTACTT 58.622 39.130 5.07 0.00 0.00 2.24
831 7259 3.991367 ACGCAACTAGTTTCAGCTTACT 58.009 40.909 5.07 0.00 0.00 2.24
832 7260 5.834239 TTACGCAACTAGTTTCAGCTTAC 57.166 39.130 5.07 0.00 0.00 2.34
940 7370 1.064389 ACTGCTTGCTTATCCTTCCCC 60.064 52.381 0.00 0.00 0.00 4.81
1059 7489 1.758514 CCTCCTCGGGCTGAGCTTA 60.759 63.158 18.14 4.60 43.82 3.09
1554 7984 1.071471 GCGGTAGTATGCCATGCCT 59.929 57.895 0.00 0.00 43.25 4.75
1658 8111 3.123050 GCTGGCAGAACAAACGAAAAAT 58.877 40.909 20.86 0.00 0.00 1.82
1920 8375 5.681954 GCCATCTCATCTCATATACTCCTGC 60.682 48.000 0.00 0.00 0.00 4.85
1938 8406 3.583383 GTGCTTTCTGCGCCATCT 58.417 55.556 4.18 0.00 45.73 2.90
1944 8412 1.394572 TCATCGATTGTGCTTTCTGCG 59.605 47.619 0.00 0.00 46.63 5.18
1945 8413 3.064408 TGATCATCGATTGTGCTTTCTGC 59.936 43.478 0.00 0.00 43.25 4.26
1948 8416 6.729104 GATTTGATCATCGATTGTGCTTTC 57.271 37.500 0.00 0.00 0.00 2.62
1960 8428 8.604035 TCTTTACTTTACTGCGATTTGATCATC 58.396 33.333 0.00 0.00 0.00 2.92
1972 8440 7.138736 TGATTGTGCTTTCTTTACTTTACTGC 58.861 34.615 0.00 0.00 0.00 4.40
1973 8441 9.173939 CTTGATTGTGCTTTCTTTACTTTACTG 57.826 33.333 0.00 0.00 0.00 2.74
1983 8451 4.464008 TCTGGTCTTGATTGTGCTTTCTT 58.536 39.130 0.00 0.00 0.00 2.52
2014 8482 1.021390 CGAGGTCGCTCCATGCTTTT 61.021 55.000 0.00 0.00 40.11 2.27
2039 8507 1.299926 GGCTACCTACGTGCCATCG 60.300 63.158 8.85 0.00 45.46 3.84
2101 8575 1.586564 GCCGTCCTCGTCTTCATCG 60.587 63.158 0.00 0.00 35.01 3.84
2273 8747 2.502080 CTCGTCTGCGACACGGTC 60.502 66.667 8.91 0.00 42.81 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.