Multiple sequence alignment - TraesCS7D01G324400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G324400 | chr7D | 100.000 | 6499 | 0 | 0 | 1958 | 8456 | 414274588 | 414281086 | 0.000000e+00 | 12002.0 |
1 | TraesCS7D01G324400 | chr7D | 100.000 | 1695 | 0 | 0 | 1 | 1695 | 414272631 | 414274325 | 0.000000e+00 | 3131.0 |
2 | TraesCS7D01G324400 | chr7D | 89.524 | 315 | 32 | 1 | 5050 | 5364 | 96469512 | 96469199 | 1.710000e-106 | 398.0 |
3 | TraesCS7D01G324400 | chr7D | 88.325 | 197 | 22 | 1 | 8242 | 8437 | 329047507 | 329047311 | 1.420000e-57 | 235.0 |
4 | TraesCS7D01G324400 | chr7D | 87.374 | 198 | 25 | 0 | 4737 | 4934 | 96469758 | 96469561 | 2.370000e-55 | 228.0 |
5 | TraesCS7D01G324400 | chr7A | 94.479 | 2246 | 73 | 13 | 5676 | 7911 | 476916256 | 476918460 | 0.000000e+00 | 3413.0 |
6 | TraesCS7D01G324400 | chr7A | 91.795 | 1682 | 110 | 20 | 1 | 1669 | 476911690 | 476913356 | 0.000000e+00 | 2316.0 |
7 | TraesCS7D01G324400 | chr7A | 95.545 | 1212 | 44 | 6 | 1958 | 3165 | 476913415 | 476914620 | 0.000000e+00 | 1930.0 |
8 | TraesCS7D01G324400 | chr7A | 97.404 | 1040 | 25 | 2 | 3896 | 4935 | 476914615 | 476915652 | 0.000000e+00 | 1770.0 |
9 | TraesCS7D01G324400 | chr7A | 87.320 | 765 | 50 | 18 | 3163 | 3901 | 181692505 | 181693248 | 0.000000e+00 | 832.0 |
10 | TraesCS7D01G324400 | chr7A | 96.296 | 432 | 12 | 3 | 5050 | 5481 | 476915844 | 476916271 | 0.000000e+00 | 706.0 |
11 | TraesCS7D01G324400 | chr7A | 88.026 | 309 | 34 | 3 | 5056 | 5364 | 99658549 | 99658244 | 6.240000e-96 | 363.0 |
12 | TraesCS7D01G324400 | chr7A | 81.759 | 307 | 43 | 11 | 6272 | 6575 | 476916486 | 476916782 | 2.360000e-60 | 244.0 |
13 | TraesCS7D01G324400 | chr7A | 98.876 | 89 | 0 | 1 | 4969 | 5056 | 83936191 | 83936103 | 3.160000e-34 | 158.0 |
14 | TraesCS7D01G324400 | chr7A | 90.323 | 93 | 2 | 5 | 8077 | 8165 | 714722564 | 714722653 | 1.930000e-21 | 115.0 |
15 | TraesCS7D01G324400 | chr7A | 95.238 | 63 | 3 | 0 | 7929 | 7991 | 610942819 | 610942757 | 5.400000e-17 | 100.0 |
16 | TraesCS7D01G324400 | chr7B | 95.403 | 2045 | 66 | 11 | 5050 | 7081 | 428829568 | 428831597 | 0.000000e+00 | 3230.0 |
17 | TraesCS7D01G324400 | chr7B | 95.623 | 1211 | 43 | 6 | 1958 | 3165 | 428827139 | 428828342 | 0.000000e+00 | 1934.0 |
18 | TraesCS7D01G324400 | chr7B | 89.154 | 1549 | 116 | 27 | 147 | 1669 | 428825558 | 428827080 | 0.000000e+00 | 1882.0 |
19 | TraesCS7D01G324400 | chr7B | 96.446 | 1041 | 36 | 1 | 3896 | 4935 | 428828337 | 428829377 | 0.000000e+00 | 1716.0 |
20 | TraesCS7D01G324400 | chr7B | 96.000 | 900 | 27 | 6 | 7123 | 8019 | 428833563 | 428834456 | 0.000000e+00 | 1454.0 |
21 | TraesCS7D01G324400 | chr7B | 83.501 | 794 | 58 | 37 | 3163 | 3901 | 514054584 | 514055359 | 0.000000e+00 | 673.0 |
22 | TraesCS7D01G324400 | chr7B | 95.413 | 218 | 8 | 2 | 8015 | 8232 | 428834673 | 428834888 | 6.280000e-91 | 346.0 |
23 | TraesCS7D01G324400 | chr7B | 86.111 | 216 | 25 | 5 | 8236 | 8449 | 561551649 | 561551437 | 2.370000e-55 | 228.0 |
24 | TraesCS7D01G324400 | chr7B | 79.863 | 293 | 50 | 6 | 6272 | 6562 | 428830423 | 428830708 | 1.110000e-48 | 206.0 |
25 | TraesCS7D01G324400 | chr7B | 79.888 | 179 | 25 | 5 | 6398 | 6570 | 428830370 | 428830543 | 4.150000e-23 | 121.0 |
26 | TraesCS7D01G324400 | chr1D | 89.919 | 744 | 46 | 24 | 3165 | 3902 | 447779302 | 447778582 | 0.000000e+00 | 931.0 |
27 | TraesCS7D01G324400 | chr1D | 87.562 | 201 | 24 | 1 | 8240 | 8439 | 481697813 | 481698013 | 1.840000e-56 | 231.0 |
28 | TraesCS7D01G324400 | chr1D | 95.238 | 63 | 3 | 0 | 7929 | 7991 | 106848801 | 106848739 | 5.400000e-17 | 100.0 |
29 | TraesCS7D01G324400 | chr1D | 91.429 | 70 | 4 | 1 | 7924 | 7991 | 273820874 | 273820943 | 2.510000e-15 | 95.3 |
30 | TraesCS7D01G324400 | chr3D | 88.032 | 752 | 63 | 16 | 3160 | 3899 | 468765912 | 468765176 | 0.000000e+00 | 865.0 |
31 | TraesCS7D01G324400 | chr3D | 89.549 | 421 | 33 | 10 | 3490 | 3901 | 596879017 | 596878599 | 2.700000e-144 | 523.0 |
32 | TraesCS7D01G324400 | chr3D | 90.513 | 390 | 26 | 5 | 3525 | 3904 | 565244580 | 565244192 | 9.800000e-139 | 505.0 |
33 | TraesCS7D01G324400 | chr3D | 89.406 | 387 | 31 | 3 | 3525 | 3901 | 565197598 | 565197212 | 5.940000e-131 | 479.0 |
34 | TraesCS7D01G324400 | chr3D | 90.402 | 323 | 15 | 5 | 3161 | 3482 | 500634680 | 500634373 | 2.200000e-110 | 411.0 |
35 | TraesCS7D01G324400 | chr3D | 86.538 | 208 | 23 | 5 | 8242 | 8445 | 557154796 | 557154590 | 3.070000e-54 | 224.0 |
36 | TraesCS7D01G324400 | chr3D | 98.851 | 87 | 0 | 1 | 4969 | 5054 | 203684631 | 203684545 | 4.090000e-33 | 154.0 |
37 | TraesCS7D01G324400 | chr4D | 85.714 | 777 | 61 | 33 | 3163 | 3897 | 54384700 | 54385468 | 0.000000e+00 | 774.0 |
38 | TraesCS7D01G324400 | chr4D | 85.302 | 762 | 68 | 32 | 3162 | 3900 | 170351415 | 170352155 | 0.000000e+00 | 747.0 |
39 | TraesCS7D01G324400 | chr4D | 98.851 | 87 | 0 | 1 | 4969 | 5054 | 28237894 | 28237808 | 4.090000e-33 | 154.0 |
40 | TraesCS7D01G324400 | chr2D | 85.056 | 803 | 57 | 32 | 3159 | 3903 | 323088862 | 323088065 | 0.000000e+00 | 760.0 |
41 | TraesCS7D01G324400 | chr2D | 84.052 | 765 | 63 | 25 | 3167 | 3899 | 391102251 | 391101514 | 0.000000e+00 | 682.0 |
42 | TraesCS7D01G324400 | chr2D | 89.164 | 323 | 20 | 5 | 3160 | 3482 | 557687328 | 557687635 | 1.030000e-103 | 388.0 |
43 | TraesCS7D01G324400 | chr2D | 95.745 | 94 | 3 | 1 | 4964 | 5056 | 307490081 | 307490174 | 5.290000e-32 | 150.0 |
44 | TraesCS7D01G324400 | chr2D | 95.238 | 63 | 3 | 0 | 7929 | 7991 | 22200909 | 22200971 | 5.400000e-17 | 100.0 |
45 | TraesCS7D01G324400 | chr3A | 85.176 | 769 | 62 | 26 | 3162 | 3901 | 95901726 | 95902471 | 0.000000e+00 | 741.0 |
46 | TraesCS7D01G324400 | chr3A | 95.238 | 63 | 3 | 0 | 7929 | 7991 | 71236592 | 71236530 | 5.400000e-17 | 100.0 |
47 | TraesCS7D01G324400 | chr3A | 93.846 | 65 | 4 | 0 | 7926 | 7990 | 746941483 | 746941547 | 1.940000e-16 | 99.0 |
48 | TraesCS7D01G324400 | chr5B | 83.577 | 822 | 49 | 36 | 3161 | 3899 | 399183893 | 399183075 | 0.000000e+00 | 691.0 |
49 | TraesCS7D01G324400 | chr5B | 88.119 | 202 | 23 | 1 | 8239 | 8439 | 608954144 | 608954345 | 1.100000e-58 | 239.0 |
50 | TraesCS7D01G324400 | chr2B | 84.983 | 586 | 42 | 24 | 3156 | 3713 | 543519752 | 543520319 | 3.450000e-153 | 553.0 |
51 | TraesCS7D01G324400 | chr2B | 85.034 | 441 | 52 | 7 | 4373 | 4812 | 789008162 | 789008589 | 3.620000e-118 | 436.0 |
52 | TraesCS7D01G324400 | chr3B | 84.746 | 531 | 53 | 19 | 3392 | 3899 | 237321963 | 237321438 | 2.720000e-139 | 507.0 |
53 | TraesCS7D01G324400 | chr3B | 90.476 | 315 | 28 | 2 | 5050 | 5364 | 573310217 | 573310529 | 1.700000e-111 | 414.0 |
54 | TraesCS7D01G324400 | chr3B | 84.597 | 409 | 37 | 20 | 3161 | 3547 | 237322235 | 237321831 | 4.790000e-102 | 383.0 |
55 | TraesCS7D01G324400 | chr1B | 86.848 | 441 | 47 | 4 | 4373 | 4812 | 339080016 | 339079586 | 4.590000e-132 | 483.0 |
56 | TraesCS7D01G324400 | chr1B | 86.395 | 441 | 49 | 4 | 4373 | 4812 | 338887750 | 338887320 | 9.940000e-129 | 472.0 |
57 | TraesCS7D01G324400 | chr1B | 91.186 | 295 | 23 | 1 | 4017 | 4308 | 338888040 | 338887746 | 1.710000e-106 | 398.0 |
58 | TraesCS7D01G324400 | chr1B | 90.169 | 295 | 26 | 1 | 4017 | 4308 | 339080306 | 339080012 | 1.720000e-101 | 381.0 |
59 | TraesCS7D01G324400 | chr6B | 86.395 | 441 | 49 | 4 | 4373 | 4812 | 42821168 | 42820738 | 9.940000e-129 | 472.0 |
60 | TraesCS7D01G324400 | chr6B | 95.238 | 63 | 3 | 0 | 7929 | 7991 | 39369637 | 39369575 | 5.400000e-17 | 100.0 |
61 | TraesCS7D01G324400 | chr6A | 85.520 | 442 | 50 | 9 | 4373 | 4812 | 555578718 | 555579147 | 4.660000e-122 | 449.0 |
62 | TraesCS7D01G324400 | chr6A | 89.492 | 295 | 28 | 1 | 4017 | 4308 | 555578428 | 555578722 | 3.730000e-98 | 370.0 |
63 | TraesCS7D01G324400 | chr5A | 85.520 | 442 | 50 | 9 | 4373 | 4812 | 601236191 | 601236620 | 4.660000e-122 | 449.0 |
64 | TraesCS7D01G324400 | chr5A | 90.169 | 295 | 26 | 1 | 4017 | 4308 | 601235901 | 601236195 | 1.720000e-101 | 381.0 |
65 | TraesCS7D01G324400 | chr5A | 100.000 | 85 | 0 | 0 | 4969 | 5053 | 355734140 | 355734056 | 3.160000e-34 | 158.0 |
66 | TraesCS7D01G324400 | chr5A | 94.118 | 102 | 4 | 2 | 4960 | 5060 | 89009086 | 89009186 | 4.090000e-33 | 154.0 |
67 | TraesCS7D01G324400 | chr6D | 85.034 | 441 | 51 | 7 | 4373 | 4812 | 336838459 | 336838033 | 1.300000e-117 | 435.0 |
68 | TraesCS7D01G324400 | chr6D | 90.169 | 295 | 25 | 2 | 4017 | 4308 | 336838748 | 336838455 | 1.720000e-101 | 381.0 |
69 | TraesCS7D01G324400 | chr6D | 87.000 | 200 | 26 | 0 | 8240 | 8439 | 181729536 | 181729735 | 8.540000e-55 | 226.0 |
70 | TraesCS7D01G324400 | chr6D | 96.907 | 97 | 1 | 2 | 4960 | 5054 | 6968029 | 6967933 | 2.440000e-35 | 161.0 |
71 | TraesCS7D01G324400 | chr4A | 88.498 | 313 | 28 | 4 | 5052 | 5364 | 461902016 | 461902320 | 1.040000e-98 | 372.0 |
72 | TraesCS7D01G324400 | chr4A | 89.055 | 201 | 21 | 1 | 8240 | 8439 | 185067012 | 185067212 | 1.820000e-61 | 248.0 |
73 | TraesCS7D01G324400 | chr4A | 93.878 | 98 | 5 | 1 | 4957 | 5053 | 570916250 | 570916153 | 6.840000e-31 | 147.0 |
74 | TraesCS7D01G324400 | chr4A | 94.118 | 68 | 3 | 1 | 7925 | 7991 | 56266418 | 56266351 | 1.500000e-17 | 102.0 |
75 | TraesCS7D01G324400 | chr4A | 90.411 | 73 | 5 | 1 | 7921 | 7991 | 7123751 | 7123823 | 2.510000e-15 | 95.3 |
76 | TraesCS7D01G324400 | chr5D | 87.379 | 206 | 19 | 6 | 8242 | 8444 | 361141441 | 361141240 | 6.600000e-56 | 230.0 |
77 | TraesCS7D01G324400 | chr2A | 86.765 | 204 | 26 | 1 | 8240 | 8442 | 755819923 | 755819720 | 8.540000e-55 | 226.0 |
78 | TraesCS7D01G324400 | chr2A | 90.541 | 74 | 5 | 1 | 7920 | 7991 | 99790564 | 99790491 | 6.990000e-16 | 97.1 |
79 | TraesCS7D01G324400 | chr4B | 93.000 | 100 | 5 | 2 | 4956 | 5054 | 91298411 | 91298313 | 2.460000e-30 | 145.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G324400 | chr7D | 414272631 | 414281086 | 8455 | False | 7566.500000 | 12002 | 100.000000 | 1 | 8456 | 2 | chr7D.!!$F1 | 8455 |
1 | TraesCS7D01G324400 | chr7D | 96469199 | 96469758 | 559 | True | 313.000000 | 398 | 88.449000 | 4737 | 5364 | 2 | chr7D.!!$R2 | 627 |
2 | TraesCS7D01G324400 | chr7A | 476911690 | 476918460 | 6770 | False | 1729.833333 | 3413 | 92.879667 | 1 | 7911 | 6 | chr7A.!!$F3 | 7910 |
3 | TraesCS7D01G324400 | chr7A | 181692505 | 181693248 | 743 | False | 832.000000 | 832 | 87.320000 | 3163 | 3901 | 1 | chr7A.!!$F1 | 738 |
4 | TraesCS7D01G324400 | chr7B | 428825558 | 428834888 | 9330 | False | 1361.125000 | 3230 | 90.973750 | 147 | 8232 | 8 | chr7B.!!$F2 | 8085 |
5 | TraesCS7D01G324400 | chr7B | 514054584 | 514055359 | 775 | False | 673.000000 | 673 | 83.501000 | 3163 | 3901 | 1 | chr7B.!!$F1 | 738 |
6 | TraesCS7D01G324400 | chr1D | 447778582 | 447779302 | 720 | True | 931.000000 | 931 | 89.919000 | 3165 | 3902 | 1 | chr1D.!!$R2 | 737 |
7 | TraesCS7D01G324400 | chr3D | 468765176 | 468765912 | 736 | True | 865.000000 | 865 | 88.032000 | 3160 | 3899 | 1 | chr3D.!!$R2 | 739 |
8 | TraesCS7D01G324400 | chr4D | 54384700 | 54385468 | 768 | False | 774.000000 | 774 | 85.714000 | 3163 | 3897 | 1 | chr4D.!!$F1 | 734 |
9 | TraesCS7D01G324400 | chr4D | 170351415 | 170352155 | 740 | False | 747.000000 | 747 | 85.302000 | 3162 | 3900 | 1 | chr4D.!!$F2 | 738 |
10 | TraesCS7D01G324400 | chr2D | 323088065 | 323088862 | 797 | True | 760.000000 | 760 | 85.056000 | 3159 | 3903 | 1 | chr2D.!!$R1 | 744 |
11 | TraesCS7D01G324400 | chr2D | 391101514 | 391102251 | 737 | True | 682.000000 | 682 | 84.052000 | 3167 | 3899 | 1 | chr2D.!!$R2 | 732 |
12 | TraesCS7D01G324400 | chr3A | 95901726 | 95902471 | 745 | False | 741.000000 | 741 | 85.176000 | 3162 | 3901 | 1 | chr3A.!!$F1 | 739 |
13 | TraesCS7D01G324400 | chr5B | 399183075 | 399183893 | 818 | True | 691.000000 | 691 | 83.577000 | 3161 | 3899 | 1 | chr5B.!!$R1 | 738 |
14 | TraesCS7D01G324400 | chr2B | 543519752 | 543520319 | 567 | False | 553.000000 | 553 | 84.983000 | 3156 | 3713 | 1 | chr2B.!!$F1 | 557 |
15 | TraesCS7D01G324400 | chr3B | 237321438 | 237322235 | 797 | True | 445.000000 | 507 | 84.671500 | 3161 | 3899 | 2 | chr3B.!!$R1 | 738 |
16 | TraesCS7D01G324400 | chr1B | 338887320 | 338888040 | 720 | True | 435.000000 | 472 | 88.790500 | 4017 | 4812 | 2 | chr1B.!!$R1 | 795 |
17 | TraesCS7D01G324400 | chr1B | 339079586 | 339080306 | 720 | True | 432.000000 | 483 | 88.508500 | 4017 | 4812 | 2 | chr1B.!!$R2 | 795 |
18 | TraesCS7D01G324400 | chr6A | 555578428 | 555579147 | 719 | False | 409.500000 | 449 | 87.506000 | 4017 | 4812 | 2 | chr6A.!!$F1 | 795 |
19 | TraesCS7D01G324400 | chr5A | 601235901 | 601236620 | 719 | False | 415.000000 | 449 | 87.844500 | 4017 | 4812 | 2 | chr5A.!!$F2 | 795 |
20 | TraesCS7D01G324400 | chr6D | 336838033 | 336838748 | 715 | True | 408.000000 | 435 | 87.601500 | 4017 | 4812 | 2 | chr6D.!!$R2 | 795 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
88 | 89 | 0.546598 | ACCATTCATCCGGGGAGTTC | 59.453 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 | F |
1533 | 1561 | 0.105039 | AGCCAGGATAAGCTGTACGC | 59.895 | 55.000 | 0.00 | 2.08 | 38.11 | 4.42 | F |
1682 | 1713 | 0.036388 | TCAACGTTCAGGGATGGAGC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 | F |
2788 | 2822 | 0.107312 | CCTCTGCATCAACAGGAGGG | 60.107 | 60.000 | 7.81 | 0.00 | 38.26 | 4.30 | F |
2789 | 2823 | 0.617413 | CTCTGCATCAACAGGAGGGT | 59.383 | 55.000 | 0.00 | 0.00 | 38.26 | 4.34 | F |
2790 | 2824 | 1.833630 | CTCTGCATCAACAGGAGGGTA | 59.166 | 52.381 | 0.00 | 0.00 | 38.26 | 3.69 | F |
3187 | 3223 | 1.834822 | ATCTCTAGCAGACCCCGCC | 60.835 | 63.158 | 0.00 | 0.00 | 32.26 | 6.13 | F |
4985 | 5472 | 0.115745 | ACTACTCCCTCCGTCCCAAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 | F |
4986 | 5473 | 1.272807 | CTACTCCCTCCGTCCCAAAA | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 | F |
4987 | 5474 | 1.838077 | CTACTCCCTCCGTCCCAAAAT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 | F |
4988 | 5475 | 1.961133 | ACTCCCTCCGTCCCAAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 | F |
6793 | 7293 | 2.018542 | GGTTGCGTACCTGCTATCAA | 57.981 | 50.000 | 0.76 | 0.00 | 44.10 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1669 | 1700 | 0.327867 | ATCCTGGCTCCATCCCTGAA | 60.328 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 | R |
3187 | 3223 | 0.944386 | CTTATGCGGGTCGGGATTTG | 59.056 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 | R |
3266 | 3302 | 1.792115 | ACGGGTTGATTATACGGGGA | 58.208 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 | R |
4355 | 4678 | 2.479566 | ACCATACAGCTGTGAGTTGG | 57.520 | 50.000 | 29.57 | 27.19 | 30.10 | 3.77 | R |
4600 | 4926 | 4.047142 | CCTGAAGCAAAGAAACTTTGAGC | 58.953 | 43.478 | 22.74 | 11.71 | 0.00 | 4.26 | R |
4732 | 5058 | 5.300286 | CCTGATGGGATTCAAACCTAATGAC | 59.700 | 44.000 | 0.00 | 0.00 | 37.23 | 3.06 | R |
5128 | 5615 | 0.824595 | AGCATGTCACTTGGCAAGCA | 60.825 | 50.000 | 26.45 | 16.72 | 45.57 | 3.91 | R |
6654 | 7154 | 1.400846 | CTGATGGCTAAGCTGCTGTTG | 59.599 | 52.381 | 1.35 | 0.00 | 0.00 | 3.33 | R |
6807 | 7307 | 5.468746 | CGAGGAAACTATGAACAAGGTGAAA | 59.531 | 40.000 | 0.00 | 0.00 | 44.43 | 2.69 | R |
7106 | 9555 | 9.956720 | AAACTTGAAATTTGAGTAAGTGATCAG | 57.043 | 29.630 | 0.00 | 0.00 | 32.42 | 2.90 | R |
7116 | 9565 | 8.250143 | AGGTGGATAAAACTTGAAATTTGAGT | 57.750 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 | R |
8287 | 10960 | 0.102300 | GTGCTTCACAAAAGCCGGTT | 59.898 | 50.000 | 1.90 | 0.00 | 42.36 | 4.44 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 0.626382 | TTCCCTGGAAACACACCACA | 59.374 | 50.000 | 0.00 | 0.00 | 35.60 | 4.17 |
42 | 43 | 3.119193 | CACCACAGTGCAACCACC | 58.881 | 61.111 | 0.00 | 0.00 | 43.09 | 4.61 |
52 | 53 | 1.541588 | GTGCAACCACCCTCTTCAATC | 59.458 | 52.381 | 0.00 | 0.00 | 35.92 | 2.67 |
75 | 76 | 6.855836 | TCTTGTTCTGAATATGCAACCATTC | 58.144 | 36.000 | 10.53 | 10.53 | 32.85 | 2.67 |
79 | 80 | 6.183360 | TGTTCTGAATATGCAACCATTCATCC | 60.183 | 38.462 | 17.17 | 11.06 | 39.69 | 3.51 |
88 | 89 | 0.546598 | ACCATTCATCCGGGGAGTTC | 59.453 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
91 | 92 | 2.620367 | CCATTCATCCGGGGAGTTCAAA | 60.620 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
92 | 93 | 2.194201 | TTCATCCGGGGAGTTCAAAC | 57.806 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
96 | 97 | 1.002502 | CCGGGGAGTTCAAACCTCC | 60.003 | 63.158 | 0.00 | 0.00 | 36.58 | 4.30 |
106 | 107 | 5.646360 | GGAGTTCAAACCTCCGATATTTCAA | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
140 | 142 | 9.567776 | TTTTCTAGGATTGTGTAGTCATTGAAA | 57.432 | 29.630 | 0.00 | 0.00 | 31.69 | 2.69 |
141 | 143 | 8.777865 | TTCTAGGATTGTGTAGTCATTGAAAG | 57.222 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
143 | 145 | 8.035394 | TCTAGGATTGTGTAGTCATTGAAAGAC | 58.965 | 37.037 | 0.00 | 0.00 | 36.26 | 3.01 |
144 | 146 | 6.533730 | AGGATTGTGTAGTCATTGAAAGACA | 58.466 | 36.000 | 3.27 | 0.00 | 38.46 | 3.41 |
145 | 147 | 6.998074 | AGGATTGTGTAGTCATTGAAAGACAA | 59.002 | 34.615 | 12.48 | 12.48 | 42.95 | 3.18 |
151 | 153 | 3.490348 | AGTCATTGAAAGACAACCTGGG | 58.510 | 45.455 | 3.27 | 0.00 | 41.52 | 4.45 |
174 | 176 | 2.143925 | GGATCGGGCATAAGCAAGTAC | 58.856 | 52.381 | 0.00 | 0.00 | 44.61 | 2.73 |
186 | 188 | 4.836125 | AAGCAAGTACACATCCAAACAG | 57.164 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
233 | 235 | 7.546667 | GTCGTAACCAAACTTGACATAGGATTA | 59.453 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
296 | 310 | 8.687824 | TGAAAGAGAAAAGCACTTAACAAAAG | 57.312 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
297 | 311 | 8.519526 | TGAAAGAGAAAAGCACTTAACAAAAGA | 58.480 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
298 | 312 | 9.521503 | GAAAGAGAAAAGCACTTAACAAAAGAT | 57.478 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
300 | 314 | 7.652727 | AGAGAAAAGCACTTAACAAAAGATCC | 58.347 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
301 | 315 | 6.438763 | AGAAAAGCACTTAACAAAAGATCCG | 58.561 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
333 | 347 | 1.279271 | ACCAGGATGCAACCTAGACAC | 59.721 | 52.381 | 16.10 | 0.00 | 38.32 | 3.67 |
353 | 367 | 1.189884 | CGCGTTCACAAATGCTTTTGG | 59.810 | 47.619 | 24.08 | 15.14 | 45.34 | 3.28 |
434 | 448 | 9.097257 | GTTAGCACATTTATTATGTTGCCAAAT | 57.903 | 29.630 | 0.00 | 0.00 | 31.34 | 2.32 |
483 | 497 | 7.918562 | GCTCAAAAACCTAAGAAACACAACATA | 59.081 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
484 | 498 | 9.450807 | CTCAAAAACCTAAGAAACACAACATAG | 57.549 | 33.333 | 0.00 | 0.00 | 0.00 | 2.23 |
486 | 500 | 9.233232 | CAAAAACCTAAGAAACACAACATAGTC | 57.767 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
494 | 508 | 6.725246 | AGAAACACAACATAGTCTTTTTCCG | 58.275 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
498 | 512 | 7.556733 | ACACAACATAGTCTTTTTCCGTTTA | 57.443 | 32.000 | 0.00 | 0.00 | 0.00 | 2.01 |
506 | 520 | 9.274065 | CATAGTCTTTTTCCGTTTAATAAGCAC | 57.726 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
507 | 521 | 7.266922 | AGTCTTTTTCCGTTTAATAAGCACA | 57.733 | 32.000 | 0.00 | 0.00 | 0.00 | 4.57 |
510 | 524 | 8.635983 | GTCTTTTTCCGTTTAATAAGCACAATC | 58.364 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
511 | 525 | 8.353684 | TCTTTTTCCGTTTAATAAGCACAATCA | 58.646 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
529 | 543 | 7.148474 | GCACAATCAGAATTCAAAGATGCAAAT | 60.148 | 33.333 | 8.44 | 0.00 | 0.00 | 2.32 |
535 | 549 | 6.364165 | CAGAATTCAAAGATGCAAATCACGTT | 59.636 | 34.615 | 8.44 | 0.00 | 0.00 | 3.99 |
538 | 552 | 2.352503 | AAGATGCAAATCACGTTGGC | 57.647 | 45.000 | 0.00 | 0.00 | 37.27 | 4.52 |
598 | 613 | 7.441890 | TGGTTGAACACAACAATAATATCGT | 57.558 | 32.000 | 13.63 | 0.00 | 43.68 | 3.73 |
611 | 626 | 7.542890 | ACAATAATATCGTGATGCCAAACAAA | 58.457 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
616 | 631 | 2.799412 | TCGTGATGCCAAACAAAAATGC | 59.201 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
675 | 690 | 4.164843 | TCACCCATGGGATTAGTTTAGC | 57.835 | 45.455 | 38.07 | 0.00 | 38.96 | 3.09 |
718 | 736 | 6.657117 | TGGCAGTAGCAATTAACTATGTCAAA | 59.343 | 34.615 | 0.00 | 0.00 | 44.61 | 2.69 |
824 | 842 | 4.344104 | CCCAGAAAAGCAGAGGGAATTAA | 58.656 | 43.478 | 0.00 | 0.00 | 42.25 | 1.40 |
1369 | 1397 | 2.730928 | GCTAGAATTGAGCTCGATCTGC | 59.269 | 50.000 | 17.02 | 15.71 | 36.96 | 4.26 |
1400 | 1428 | 0.234106 | CATTGCCGATCGAGATGTGC | 59.766 | 55.000 | 18.66 | 10.84 | 0.00 | 4.57 |
1407 | 1435 | 1.585668 | CGATCGAGATGTGCAGTGTTC | 59.414 | 52.381 | 10.26 | 0.00 | 0.00 | 3.18 |
1418 | 1446 | 2.216488 | GTGCAGTGTTCGCGATATACTG | 59.784 | 50.000 | 28.65 | 28.65 | 41.15 | 2.74 |
1427 | 1455 | 3.072211 | TCGCGATATACTGTCCGATCTT | 58.928 | 45.455 | 3.71 | 0.00 | 0.00 | 2.40 |
1437 | 1465 | 5.923733 | ACTGTCCGATCTTGTAAGATTCT | 57.076 | 39.130 | 8.41 | 0.00 | 45.39 | 2.40 |
1446 | 1474 | 3.576982 | TCTTGTAAGATTCTGGTGTCGGT | 59.423 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
1512 | 1540 | 1.340088 | TAGTTACAGCAACCGGGTCA | 58.660 | 50.000 | 6.32 | 0.00 | 37.93 | 4.02 |
1533 | 1561 | 0.105039 | AGCCAGGATAAGCTGTACGC | 59.895 | 55.000 | 0.00 | 2.08 | 38.11 | 4.42 |
1543 | 1571 | 1.026718 | AGCTGTACGCATGGGCTTTC | 61.027 | 55.000 | 10.10 | 0.00 | 42.61 | 2.62 |
1544 | 1572 | 1.305219 | GCTGTACGCATGGGCTTTCA | 61.305 | 55.000 | 10.10 | 3.52 | 38.92 | 2.69 |
1579 | 1610 | 7.840342 | AGTTATCATCTGACTTGTTTGCTAG | 57.160 | 36.000 | 0.00 | 0.00 | 0.00 | 3.42 |
1608 | 1639 | 2.230992 | TGCCAAAATGTATGCACTCACC | 59.769 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
1610 | 1641 | 3.091545 | CCAAAATGTATGCACTCACCCT | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
1622 | 1653 | 3.738982 | CACTCACCCTTGTGACATTACA | 58.261 | 45.455 | 0.00 | 0.00 | 46.40 | 2.41 |
1629 | 1660 | 4.953579 | ACCCTTGTGACATTACAAACTGTT | 59.046 | 37.500 | 0.00 | 0.00 | 39.81 | 3.16 |
1632 | 1663 | 6.405286 | CCCTTGTGACATTACAAACTGTTGAA | 60.405 | 38.462 | 0.00 | 0.00 | 39.81 | 2.69 |
1636 | 1667 | 7.192913 | TGTGACATTACAAACTGTTGAATCAC | 58.807 | 34.615 | 0.00 | 3.20 | 38.20 | 3.06 |
1638 | 1669 | 5.212194 | ACATTACAAACTGTTGAATCACGC | 58.788 | 37.500 | 0.00 | 0.00 | 38.20 | 5.34 |
1642 | 1673 | 2.981805 | CAAACTGTTGAATCACGCCATG | 59.018 | 45.455 | 0.00 | 0.00 | 36.83 | 3.66 |
1648 | 1679 | 3.565902 | TGTTGAATCACGCCATGTAAACA | 59.434 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1658 | 1689 | 3.360463 | CGCCATGTAAACAACAACAATCG | 59.640 | 43.478 | 0.00 | 0.00 | 42.70 | 3.34 |
1659 | 1690 | 3.121113 | GCCATGTAAACAACAACAATCGC | 59.879 | 43.478 | 0.00 | 0.00 | 42.70 | 4.58 |
1669 | 1700 | 0.506932 | CAACAATCGCGACTCAACGT | 59.493 | 50.000 | 12.93 | 0.00 | 35.59 | 3.99 |
1671 | 1702 | 0.782384 | ACAATCGCGACTCAACGTTC | 59.218 | 50.000 | 12.93 | 0.00 | 35.59 | 3.95 |
1673 | 1704 | 1.060713 | AATCGCGACTCAACGTTCAG | 58.939 | 50.000 | 12.93 | 0.00 | 35.59 | 3.02 |
1675 | 1706 | 2.372690 | CGCGACTCAACGTTCAGGG | 61.373 | 63.158 | 3.65 | 0.00 | 35.59 | 4.45 |
1676 | 1707 | 1.006571 | GCGACTCAACGTTCAGGGA | 60.007 | 57.895 | 3.65 | 0.00 | 35.59 | 4.20 |
1677 | 1708 | 0.389948 | GCGACTCAACGTTCAGGGAT | 60.390 | 55.000 | 3.65 | 0.00 | 35.59 | 3.85 |
1678 | 1709 | 1.350193 | CGACTCAACGTTCAGGGATG | 58.650 | 55.000 | 3.65 | 0.00 | 0.00 | 3.51 |
1679 | 1710 | 1.726853 | GACTCAACGTTCAGGGATGG | 58.273 | 55.000 | 3.65 | 0.00 | 0.00 | 3.51 |
1680 | 1711 | 1.275291 | GACTCAACGTTCAGGGATGGA | 59.725 | 52.381 | 3.65 | 0.00 | 0.00 | 3.41 |
1681 | 1712 | 1.276421 | ACTCAACGTTCAGGGATGGAG | 59.724 | 52.381 | 3.65 | 5.36 | 0.00 | 3.86 |
1682 | 1713 | 0.036388 | TCAACGTTCAGGGATGGAGC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1683 | 1714 | 1.026718 | CAACGTTCAGGGATGGAGCC | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1684 | 1715 | 1.488705 | AACGTTCAGGGATGGAGCCA | 61.489 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1685 | 1716 | 1.153289 | CGTTCAGGGATGGAGCCAG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
1686 | 1717 | 1.225704 | GTTCAGGGATGGAGCCAGG | 59.774 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
1687 | 1718 | 1.082766 | TTCAGGGATGGAGCCAGGA | 59.917 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
1688 | 1719 | 0.327867 | TTCAGGGATGGAGCCAGGAT | 60.328 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1689 | 1720 | 1.058428 | TCAGGGATGGAGCCAGGATG | 61.058 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1691 | 1722 | 0.327867 | AGGGATGGAGCCAGGATGAA | 60.328 | 55.000 | 0.00 | 0.00 | 39.69 | 2.57 |
1692 | 1723 | 0.552848 | GGGATGGAGCCAGGATGAAA | 59.447 | 55.000 | 0.00 | 0.00 | 39.69 | 2.69 |
1693 | 1724 | 1.478288 | GGGATGGAGCCAGGATGAAAG | 60.478 | 57.143 | 0.00 | 0.00 | 39.69 | 2.62 |
1694 | 1725 | 1.492176 | GGATGGAGCCAGGATGAAAGA | 59.508 | 52.381 | 0.00 | 0.00 | 39.69 | 2.52 |
2016 | 2047 | 7.744087 | TGAAATAATAGTGCTGACAAACTGT | 57.256 | 32.000 | 1.55 | 0.00 | 0.00 | 3.55 |
2085 | 2116 | 1.615384 | GGAGGGTTGCTCATTCTGCTT | 60.615 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
2109 | 2140 | 3.241804 | CGAGAAACATCAGCGCTAAGAAC | 60.242 | 47.826 | 10.99 | 0.00 | 0.00 | 3.01 |
2217 | 2248 | 8.126700 | CCGGTAAGTTATAAATTTGTTAGGCAG | 58.873 | 37.037 | 3.16 | 0.00 | 0.00 | 4.85 |
2364 | 2395 | 4.924305 | TGAGCTTCTGCAATCTGTTTTT | 57.076 | 36.364 | 0.00 | 0.00 | 42.74 | 1.94 |
2365 | 2396 | 6.389830 | TTGAGCTTCTGCAATCTGTTTTTA | 57.610 | 33.333 | 0.00 | 0.00 | 42.74 | 1.52 |
2472 | 2504 | 9.765795 | TTAACCAAACTTCTCTTTGTTTTGAAA | 57.234 | 25.926 | 0.00 | 0.00 | 34.60 | 2.69 |
2473 | 2505 | 7.652300 | ACCAAACTTCTCTTTGTTTTGAAAC | 57.348 | 32.000 | 0.00 | 0.00 | 39.33 | 2.78 |
2530 | 2563 | 4.850386 | ACAGTTTCTATGACCCCCTTTACT | 59.150 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2537 | 2570 | 8.808240 | TTCTATGACCCCCTTTACTGTATAAT | 57.192 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
2538 | 2571 | 8.202461 | TCTATGACCCCCTTTACTGTATAATG | 57.798 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2628 | 2662 | 3.124297 | GCTTCCTCTTTGTTCAGTGATCG | 59.876 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
2726 | 2760 | 5.496556 | TCCATGACGACAATTTGGATAACT | 58.503 | 37.500 | 4.86 | 0.00 | 30.63 | 2.24 |
2788 | 2822 | 0.107312 | CCTCTGCATCAACAGGAGGG | 60.107 | 60.000 | 7.81 | 0.00 | 38.26 | 4.30 |
2789 | 2823 | 0.617413 | CTCTGCATCAACAGGAGGGT | 59.383 | 55.000 | 0.00 | 0.00 | 38.26 | 4.34 |
2790 | 2824 | 1.833630 | CTCTGCATCAACAGGAGGGTA | 59.166 | 52.381 | 0.00 | 0.00 | 38.26 | 3.69 |
2791 | 2825 | 2.237143 | CTCTGCATCAACAGGAGGGTAA | 59.763 | 50.000 | 0.00 | 0.00 | 38.26 | 2.85 |
3023 | 3058 | 8.094798 | TGAATTTACTGTCTACTTTCGCATTT | 57.905 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
3187 | 3223 | 1.834822 | ATCTCTAGCAGACCCCGCC | 60.835 | 63.158 | 0.00 | 0.00 | 32.26 | 6.13 |
3266 | 3302 | 1.979693 | GGGCGAGGACAGACTCAGT | 60.980 | 63.158 | 0.00 | 0.00 | 37.34 | 3.41 |
3593 | 3872 | 3.547513 | GGAGACCGGCCGGCTATT | 61.548 | 66.667 | 43.58 | 25.63 | 39.32 | 1.73 |
3903 | 4223 | 5.478679 | GGGTCTGCTAGAGATGCTCTTATAA | 59.521 | 44.000 | 1.88 | 0.00 | 41.50 | 0.98 |
3904 | 4224 | 6.386654 | GGTCTGCTAGAGATGCTCTTATAAC | 58.613 | 44.000 | 1.88 | 0.00 | 41.50 | 1.89 |
4273 | 4596 | 7.257790 | TCTTCTCTTTGGATTAACATCTGGA | 57.742 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4355 | 4678 | 2.295349 | CCTTCTGGTGCATATTCATGGC | 59.705 | 50.000 | 0.00 | 0.00 | 32.36 | 4.40 |
4471 | 4794 | 2.180159 | TAGCGTTGGTTCCTGGAGCC | 62.180 | 60.000 | 21.51 | 21.51 | 33.44 | 4.70 |
4551 | 4874 | 6.650807 | TCTTTGAAGTACAGTAGCCATTTCAG | 59.349 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
4867 | 5193 | 5.765182 | GCATGGTAGCCTGACATAGTATTTT | 59.235 | 40.000 | 1.03 | 0.00 | 0.00 | 1.82 |
4899 | 5225 | 9.553064 | CAGGATCAAGAATTAGCTTAGTATTGT | 57.447 | 33.333 | 7.32 | 0.00 | 0.00 | 2.71 |
4931 | 5257 | 5.179555 | GCTGGTTTAGAAACGAGTTCAGAAT | 59.820 | 40.000 | 15.67 | 0.00 | 43.79 | 2.40 |
4982 | 5469 | 2.149973 | TTTACTACTCCCTCCGTCCC | 57.850 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4983 | 5470 | 1.002069 | TTACTACTCCCTCCGTCCCA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4984 | 5471 | 1.002069 | TACTACTCCCTCCGTCCCAA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
4985 | 5472 | 0.115745 | ACTACTCCCTCCGTCCCAAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
4986 | 5473 | 1.272807 | CTACTCCCTCCGTCCCAAAA | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
4987 | 5474 | 1.838077 | CTACTCCCTCCGTCCCAAAAT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
4988 | 5475 | 1.961133 | ACTCCCTCCGTCCCAAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4989 | 5476 | 2.271777 | ACTCCCTCCGTCCCAAAATAA | 58.728 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
4990 | 5477 | 2.238898 | ACTCCCTCCGTCCCAAAATAAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
4991 | 5478 | 2.238898 | CTCCCTCCGTCCCAAAATAAGT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4992 | 5479 | 2.026636 | TCCCTCCGTCCCAAAATAAGTG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4993 | 5480 | 2.026636 | CCCTCCGTCCCAAAATAAGTGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4994 | 5481 | 3.007635 | CCTCCGTCCCAAAATAAGTGAC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4995 | 5482 | 3.307480 | CCTCCGTCCCAAAATAAGTGACT | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
4996 | 5483 | 3.933332 | CTCCGTCCCAAAATAAGTGACTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
4997 | 5484 | 3.325425 | TCCGTCCCAAAATAAGTGACTCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
4998 | 5485 | 4.069304 | CCGTCCCAAAATAAGTGACTCAA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
4999 | 5486 | 4.083484 | CCGTCCCAAAATAAGTGACTCAAC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
5000 | 5487 | 4.755123 | CGTCCCAAAATAAGTGACTCAACT | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
5001 | 5488 | 5.238650 | CGTCCCAAAATAAGTGACTCAACTT | 59.761 | 40.000 | 0.00 | 0.00 | 42.89 | 2.66 |
5002 | 5489 | 6.238648 | CGTCCCAAAATAAGTGACTCAACTTT | 60.239 | 38.462 | 0.00 | 0.00 | 40.77 | 2.66 |
5003 | 5490 | 6.918022 | GTCCCAAAATAAGTGACTCAACTTTG | 59.082 | 38.462 | 0.00 | 0.00 | 40.77 | 2.77 |
5004 | 5491 | 6.605594 | TCCCAAAATAAGTGACTCAACTTTGT | 59.394 | 34.615 | 0.00 | 0.00 | 40.77 | 2.83 |
5005 | 5492 | 7.776030 | TCCCAAAATAAGTGACTCAACTTTGTA | 59.224 | 33.333 | 0.00 | 0.00 | 40.77 | 2.41 |
5006 | 5493 | 7.860872 | CCCAAAATAAGTGACTCAACTTTGTAC | 59.139 | 37.037 | 0.00 | 0.00 | 40.77 | 2.90 |
5007 | 5494 | 8.402472 | CCAAAATAAGTGACTCAACTTTGTACA | 58.598 | 33.333 | 0.00 | 0.00 | 40.77 | 2.90 |
5008 | 5495 | 9.781834 | CAAAATAAGTGACTCAACTTTGTACAA | 57.218 | 29.630 | 3.59 | 3.59 | 40.77 | 2.41 |
5026 | 5513 | 7.709269 | TGTACAAAGCTAGTACAAAGTTGAG | 57.291 | 36.000 | 22.60 | 0.00 | 46.22 | 3.02 |
5027 | 5514 | 7.270047 | TGTACAAAGCTAGTACAAAGTTGAGT | 58.730 | 34.615 | 22.60 | 0.00 | 46.22 | 3.41 |
5028 | 5515 | 6.846325 | ACAAAGCTAGTACAAAGTTGAGTC | 57.154 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
5029 | 5516 | 6.346096 | ACAAAGCTAGTACAAAGTTGAGTCA | 58.654 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5030 | 5517 | 6.258068 | ACAAAGCTAGTACAAAGTTGAGTCAC | 59.742 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
5031 | 5518 | 5.793030 | AGCTAGTACAAAGTTGAGTCACT | 57.207 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
5032 | 5519 | 6.163135 | AGCTAGTACAAAGTTGAGTCACTT | 57.837 | 37.500 | 0.00 | 0.00 | 38.74 | 3.16 |
5033 | 5520 | 7.286215 | AGCTAGTACAAAGTTGAGTCACTTA | 57.714 | 36.000 | 0.00 | 0.00 | 35.87 | 2.24 |
5034 | 5521 | 7.897864 | AGCTAGTACAAAGTTGAGTCACTTAT | 58.102 | 34.615 | 0.00 | 0.00 | 35.87 | 1.73 |
5035 | 5522 | 8.368668 | AGCTAGTACAAAGTTGAGTCACTTATT | 58.631 | 33.333 | 0.00 | 0.00 | 35.87 | 1.40 |
5036 | 5523 | 8.989980 | GCTAGTACAAAGTTGAGTCACTTATTT | 58.010 | 33.333 | 0.00 | 0.00 | 35.87 | 1.40 |
5039 | 5526 | 8.621286 | AGTACAAAGTTGAGTCACTTATTTTGG | 58.379 | 33.333 | 12.94 | 0.78 | 35.87 | 3.28 |
5040 | 5527 | 6.805713 | ACAAAGTTGAGTCACTTATTTTGGG | 58.194 | 36.000 | 12.94 | 0.00 | 35.87 | 4.12 |
5041 | 5528 | 6.605594 | ACAAAGTTGAGTCACTTATTTTGGGA | 59.394 | 34.615 | 12.94 | 0.00 | 35.87 | 4.37 |
5042 | 5529 | 6.635030 | AAGTTGAGTCACTTATTTTGGGAC | 57.365 | 37.500 | 0.00 | 0.00 | 35.10 | 4.46 |
5043 | 5530 | 4.755123 | AGTTGAGTCACTTATTTTGGGACG | 59.245 | 41.667 | 0.00 | 0.00 | 33.84 | 4.79 |
5044 | 5531 | 3.670625 | TGAGTCACTTATTTTGGGACGG | 58.329 | 45.455 | 0.00 | 0.00 | 33.84 | 4.79 |
5045 | 5532 | 3.325425 | TGAGTCACTTATTTTGGGACGGA | 59.675 | 43.478 | 0.00 | 0.00 | 33.84 | 4.69 |
5046 | 5533 | 3.933332 | GAGTCACTTATTTTGGGACGGAG | 59.067 | 47.826 | 0.00 | 0.00 | 33.84 | 4.63 |
5047 | 5534 | 3.007635 | GTCACTTATTTTGGGACGGAGG | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5048 | 5535 | 2.026636 | TCACTTATTTTGGGACGGAGGG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5049 | 5536 | 2.026636 | CACTTATTTTGGGACGGAGGGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5199 | 5686 | 3.009143 | AGCAATTCTCGAGGTTTAGGGTT | 59.991 | 43.478 | 13.56 | 0.00 | 0.00 | 4.11 |
5365 | 5852 | 9.972106 | ATATTTTCCTTCTTTCAGAGAATCAGT | 57.028 | 29.630 | 0.00 | 0.00 | 43.23 | 3.41 |
5366 | 5853 | 7.502120 | TTTTCCTTCTTTCAGAGAATCAGTG | 57.498 | 36.000 | 0.00 | 0.00 | 43.23 | 3.66 |
5410 | 5897 | 9.213799 | GAGAACTGTCAAATTAGTTTCTGAGAT | 57.786 | 33.333 | 0.00 | 0.00 | 37.27 | 2.75 |
5512 | 6004 | 6.712241 | ATCGTTTCTTCAGTGTTAGATGTG | 57.288 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
5601 | 6093 | 6.535150 | CCGCTTCTGTTATACATCTCTTTTCA | 59.465 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
5605 | 6097 | 7.834068 | TCTGTTATACATCTCTTTTCAGTGC | 57.166 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5606 | 6098 | 7.615403 | TCTGTTATACATCTCTTTTCAGTGCT | 58.385 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
5655 | 6148 | 4.922206 | TCTCTGGGAAAACATGCTTGTAT | 58.078 | 39.130 | 5.56 | 0.00 | 34.06 | 2.29 |
5715 | 6208 | 8.677148 | GGATTTAAATATCCACAAGAGTAGCA | 57.323 | 34.615 | 0.00 | 0.00 | 43.04 | 3.49 |
5716 | 6209 | 9.289782 | GGATTTAAATATCCACAAGAGTAGCAT | 57.710 | 33.333 | 0.00 | 0.00 | 43.04 | 3.79 |
5718 | 6211 | 9.632638 | ATTTAAATATCCACAAGAGTAGCATGT | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
5922 | 6422 | 5.178623 | AGCATGTTTGAATGTGATGCAAAAG | 59.821 | 36.000 | 0.00 | 0.00 | 41.56 | 2.27 |
5978 | 6478 | 7.281549 | TGAGTGTTTGGAAGAACTAAAGTTACC | 59.718 | 37.037 | 0.00 | 1.64 | 38.56 | 2.85 |
6016 | 6516 | 7.414984 | GCTTTCTTCTGAACCAGGATTCTTATG | 60.415 | 40.741 | 0.00 | 0.00 | 31.51 | 1.90 |
6089 | 6589 | 8.620416 | GGTTTCATGTTATAAGCATGTGTGATA | 58.380 | 33.333 | 18.94 | 5.21 | 42.94 | 2.15 |
6119 | 6619 | 8.780846 | AAATCATTAGAAATGCAAATTGCTGA | 57.219 | 26.923 | 19.34 | 11.55 | 45.31 | 4.26 |
6176 | 6676 | 5.707764 | GGTTACCTCTTGCTCTTTTCTGAAT | 59.292 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6213 | 6713 | 7.242322 | AGTTAGACGAAGGTTTAGGAGATTT | 57.758 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
6320 | 6820 | 2.543653 | GGTAAGCAAAATGCCGCTATGG | 60.544 | 50.000 | 0.00 | 0.00 | 46.52 | 2.74 |
6442 | 6942 | 4.035017 | CCATGTTTCAGTTGTTTCGTGTC | 58.965 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
6553 | 7053 | 3.501445 | CCTCTTGCTCTTTTCTGAACCAG | 59.499 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
6793 | 7293 | 2.018542 | GGTTGCGTACCTGCTATCAA | 57.981 | 50.000 | 0.76 | 0.00 | 44.10 | 2.57 |
6807 | 7307 | 6.725369 | ACCTGCTATCAATGATCTCATCTAGT | 59.275 | 38.462 | 0.00 | 0.00 | 35.10 | 2.57 |
7048 | 7549 | 8.585018 | TCAGAATGACATAAAAGTGTACTGAGA | 58.415 | 33.333 | 0.00 | 0.00 | 42.56 | 3.27 |
7108 | 9557 | 2.645838 | ATCCACGGATGAATTCCCTG | 57.354 | 50.000 | 2.27 | 2.78 | 42.06 | 4.45 |
7110 | 9559 | 2.126882 | TCCACGGATGAATTCCCTGAT | 58.873 | 47.619 | 2.27 | 0.00 | 42.06 | 2.90 |
7111 | 9560 | 2.104792 | TCCACGGATGAATTCCCTGATC | 59.895 | 50.000 | 2.27 | 0.00 | 42.06 | 2.92 |
7112 | 9561 | 2.158769 | CCACGGATGAATTCCCTGATCA | 60.159 | 50.000 | 2.27 | 0.00 | 42.06 | 2.92 |
7113 | 9562 | 2.874701 | CACGGATGAATTCCCTGATCAC | 59.125 | 50.000 | 2.27 | 0.00 | 42.06 | 3.06 |
7114 | 9563 | 2.774234 | ACGGATGAATTCCCTGATCACT | 59.226 | 45.455 | 2.27 | 0.00 | 42.06 | 3.41 |
7115 | 9564 | 3.200825 | ACGGATGAATTCCCTGATCACTT | 59.799 | 43.478 | 2.27 | 0.00 | 42.06 | 3.16 |
7116 | 9565 | 4.408921 | ACGGATGAATTCCCTGATCACTTA | 59.591 | 41.667 | 2.27 | 0.00 | 42.06 | 2.24 |
7117 | 9566 | 4.752101 | CGGATGAATTCCCTGATCACTTAC | 59.248 | 45.833 | 2.27 | 0.00 | 42.06 | 2.34 |
7118 | 9567 | 5.453903 | CGGATGAATTCCCTGATCACTTACT | 60.454 | 44.000 | 2.27 | 0.00 | 42.06 | 2.24 |
7119 | 9568 | 5.994668 | GGATGAATTCCCTGATCACTTACTC | 59.005 | 44.000 | 2.27 | 0.00 | 38.75 | 2.59 |
7120 | 9569 | 6.408548 | GGATGAATTCCCTGATCACTTACTCA | 60.409 | 42.308 | 2.27 | 0.00 | 38.75 | 3.41 |
7121 | 9570 | 6.373005 | TGAATTCCCTGATCACTTACTCAA | 57.627 | 37.500 | 2.27 | 0.00 | 0.00 | 3.02 |
7122 | 9571 | 6.778821 | TGAATTCCCTGATCACTTACTCAAA | 58.221 | 36.000 | 2.27 | 0.00 | 0.00 | 2.69 |
7123 | 9572 | 7.405292 | TGAATTCCCTGATCACTTACTCAAAT | 58.595 | 34.615 | 2.27 | 0.00 | 0.00 | 2.32 |
7124 | 9573 | 7.890127 | TGAATTCCCTGATCACTTACTCAAATT | 59.110 | 33.333 | 2.27 | 0.00 | 0.00 | 1.82 |
7125 | 9574 | 8.655935 | AATTCCCTGATCACTTACTCAAATTT | 57.344 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
7126 | 9575 | 7.687941 | TTCCCTGATCACTTACTCAAATTTC | 57.312 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
7127 | 9576 | 6.778821 | TCCCTGATCACTTACTCAAATTTCA | 58.221 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
7128 | 9577 | 7.230747 | TCCCTGATCACTTACTCAAATTTCAA | 58.769 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
7129 | 9578 | 7.391554 | TCCCTGATCACTTACTCAAATTTCAAG | 59.608 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
7130 | 9579 | 7.175641 | CCCTGATCACTTACTCAAATTTCAAGT | 59.824 | 37.037 | 7.65 | 7.65 | 0.00 | 3.16 |
7131 | 9580 | 8.571336 | CCTGATCACTTACTCAAATTTCAAGTT | 58.429 | 33.333 | 7.79 | 0.00 | 0.00 | 2.66 |
7132 | 9581 | 9.956720 | CTGATCACTTACTCAAATTTCAAGTTT | 57.043 | 29.630 | 7.79 | 0.00 | 0.00 | 2.66 |
7157 | 9606 | 5.860941 | TCCACCTTTTATGTTGCTTTTCA | 57.139 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
7183 | 9632 | 6.607970 | AGATATCACCATCACCACATTGAAT | 58.392 | 36.000 | 5.32 | 0.00 | 0.00 | 2.57 |
7206 | 9655 | 0.811281 | CCTCAACCGGCCTTTGATTC | 59.189 | 55.000 | 15.06 | 0.00 | 32.57 | 2.52 |
7261 | 9710 | 2.301346 | CTGTTGTTCCTTCTGGTGCTT | 58.699 | 47.619 | 0.00 | 0.00 | 34.23 | 3.91 |
7276 | 9725 | 5.036117 | TGGTGCTTGGTTCCTATCTAATC | 57.964 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
7313 | 9762 | 4.957954 | TCCTAGTAATCACAACACGGGTAT | 59.042 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
7314 | 9763 | 6.128486 | TCCTAGTAATCACAACACGGGTATA | 58.872 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
7385 | 9834 | 5.220491 | GCAACTGAGATGATACGTTTTCTCC | 60.220 | 44.000 | 0.00 | 0.00 | 34.93 | 3.71 |
7538 | 9987 | 3.445857 | GCTAGACACCAGGATTTACGAC | 58.554 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
7849 | 10299 | 6.993079 | TCTGAATACACTCAAAGCAGAACTA | 58.007 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
7861 | 10311 | 2.977914 | GCAGAACTACATCCTGCTTCA | 58.022 | 47.619 | 0.00 | 0.00 | 46.96 | 3.02 |
7862 | 10312 | 3.539604 | GCAGAACTACATCCTGCTTCAT | 58.460 | 45.455 | 0.00 | 0.00 | 46.96 | 2.57 |
7923 | 10375 | 0.474184 | ATTCCCTCAAGTATGCCGGG | 59.526 | 55.000 | 2.18 | 0.00 | 37.97 | 5.73 |
7941 | 10393 | 3.244561 | CCGGGTAAGCAATGACATAGGAT | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
7956 | 10408 | 8.607441 | TGACATAGGATTTAGATGTGCAATAC | 57.393 | 34.615 | 0.00 | 0.00 | 33.99 | 1.89 |
7959 | 10411 | 9.060347 | ACATAGGATTTAGATGTGCAATACTTG | 57.940 | 33.333 | 0.00 | 0.00 | 32.62 | 3.16 |
7970 | 10422 | 4.445557 | TGCAATACTTGGGGCACATATA | 57.554 | 40.909 | 0.00 | 0.00 | 0.00 | 0.86 |
8004 | 10456 | 1.024579 | AAACTGGCCGGCTAATCACG | 61.025 | 55.000 | 28.56 | 10.72 | 0.00 | 4.35 |
8025 | 10698 | 4.202151 | ACGGAGGTTTACAGTACGAAGTTT | 60.202 | 41.667 | 0.00 | 0.00 | 37.78 | 2.66 |
8029 | 10702 | 6.925718 | GGAGGTTTACAGTACGAAGTTTTAGT | 59.074 | 38.462 | 0.00 | 0.00 | 37.78 | 2.24 |
8040 | 10713 | 9.048446 | AGTACGAAGTTTTAGTCAAATTAAGCA | 57.952 | 29.630 | 0.00 | 0.00 | 37.78 | 3.91 |
8154 | 10827 | 6.039829 | CCTGATGAATTCTTTACTTTAGCCCC | 59.960 | 42.308 | 7.05 | 0.00 | 0.00 | 5.80 |
8155 | 10828 | 6.731467 | TGATGAATTCTTTACTTTAGCCCCT | 58.269 | 36.000 | 7.05 | 0.00 | 0.00 | 4.79 |
8156 | 10829 | 6.828785 | TGATGAATTCTTTACTTTAGCCCCTC | 59.171 | 38.462 | 7.05 | 0.00 | 0.00 | 4.30 |
8157 | 10830 | 6.388619 | TGAATTCTTTACTTTAGCCCCTCT | 57.611 | 37.500 | 7.05 | 0.00 | 0.00 | 3.69 |
8196 | 10869 | 2.554032 | AGATTTCCGTCCTGCAAAACTG | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
8218 | 10891 | 5.832221 | TGCAGGATATAGGTAGTGCTATCT | 58.168 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
8232 | 10905 | 7.390996 | GGTAGTGCTATCTATGTTGAGCTACTA | 59.609 | 40.741 | 0.00 | 0.00 | 35.89 | 1.82 |
8233 | 10906 | 7.825331 | AGTGCTATCTATGTTGAGCTACTAA | 57.175 | 36.000 | 0.00 | 0.00 | 35.89 | 2.24 |
8234 | 10907 | 7.881142 | AGTGCTATCTATGTTGAGCTACTAAG | 58.119 | 38.462 | 0.00 | 0.00 | 35.89 | 2.18 |
8235 | 10908 | 7.040062 | AGTGCTATCTATGTTGAGCTACTAAGG | 60.040 | 40.741 | 0.00 | 0.00 | 35.89 | 2.69 |
8236 | 10909 | 7.004691 | TGCTATCTATGTTGAGCTACTAAGGA | 58.995 | 38.462 | 0.00 | 0.00 | 35.89 | 3.36 |
8237 | 10910 | 7.505923 | TGCTATCTATGTTGAGCTACTAAGGAA | 59.494 | 37.037 | 0.00 | 0.00 | 35.89 | 3.36 |
8238 | 10911 | 8.026607 | GCTATCTATGTTGAGCTACTAAGGAAG | 58.973 | 40.741 | 0.00 | 0.00 | 32.04 | 3.46 |
8239 | 10912 | 7.906199 | ATCTATGTTGAGCTACTAAGGAAGT | 57.094 | 36.000 | 0.00 | 0.00 | 42.62 | 3.01 |
8240 | 10913 | 8.998277 | ATCTATGTTGAGCTACTAAGGAAGTA | 57.002 | 34.615 | 0.00 | 0.00 | 39.80 | 2.24 |
8241 | 10914 | 8.818622 | TCTATGTTGAGCTACTAAGGAAGTAA | 57.181 | 34.615 | 0.00 | 0.00 | 40.21 | 2.24 |
8242 | 10915 | 8.904834 | TCTATGTTGAGCTACTAAGGAAGTAAG | 58.095 | 37.037 | 0.00 | 0.00 | 40.21 | 2.34 |
8243 | 10916 | 6.282199 | TGTTGAGCTACTAAGGAAGTAAGG | 57.718 | 41.667 | 0.00 | 0.00 | 40.21 | 2.69 |
8244 | 10917 | 5.110598 | GTTGAGCTACTAAGGAAGTAAGGC | 58.889 | 45.833 | 0.00 | 0.00 | 40.21 | 4.35 |
8245 | 10918 | 3.705072 | TGAGCTACTAAGGAAGTAAGGCC | 59.295 | 47.826 | 0.00 | 0.00 | 40.21 | 5.19 |
8246 | 10919 | 3.962063 | GAGCTACTAAGGAAGTAAGGCCT | 59.038 | 47.826 | 0.00 | 0.00 | 40.21 | 5.19 |
8247 | 10920 | 4.363573 | AGCTACTAAGGAAGTAAGGCCTT | 58.636 | 43.478 | 24.18 | 24.18 | 45.90 | 4.35 |
8248 | 10921 | 4.406326 | AGCTACTAAGGAAGTAAGGCCTTC | 59.594 | 45.833 | 24.49 | 13.89 | 43.20 | 3.46 |
8249 | 10922 | 4.406326 | GCTACTAAGGAAGTAAGGCCTTCT | 59.594 | 45.833 | 24.49 | 16.06 | 43.20 | 2.85 |
8250 | 10923 | 5.597594 | GCTACTAAGGAAGTAAGGCCTTCTA | 59.402 | 44.000 | 24.49 | 1.44 | 43.20 | 2.10 |
8251 | 10924 | 5.936187 | ACTAAGGAAGTAAGGCCTTCTAC | 57.064 | 43.478 | 24.49 | 16.25 | 43.20 | 2.59 |
8252 | 10925 | 5.339477 | ACTAAGGAAGTAAGGCCTTCTACA | 58.661 | 41.667 | 24.49 | 0.02 | 43.20 | 2.74 |
8253 | 10926 | 5.783875 | ACTAAGGAAGTAAGGCCTTCTACAA | 59.216 | 40.000 | 24.49 | 0.00 | 43.20 | 2.41 |
8254 | 10927 | 5.780958 | AAGGAAGTAAGGCCTTCTACAAT | 57.219 | 39.130 | 24.49 | 8.82 | 40.37 | 2.71 |
8255 | 10928 | 5.104259 | AGGAAGTAAGGCCTTCTACAATG | 57.896 | 43.478 | 24.49 | 0.00 | 40.56 | 2.82 |
8256 | 10929 | 4.080299 | AGGAAGTAAGGCCTTCTACAATGG | 60.080 | 45.833 | 24.49 | 0.00 | 40.56 | 3.16 |
8257 | 10930 | 4.324331 | GGAAGTAAGGCCTTCTACAATGGT | 60.324 | 45.833 | 24.49 | 2.20 | 40.56 | 3.55 |
8258 | 10931 | 5.104652 | GGAAGTAAGGCCTTCTACAATGGTA | 60.105 | 44.000 | 24.49 | 0.00 | 40.56 | 3.25 |
8259 | 10932 | 5.615925 | AGTAAGGCCTTCTACAATGGTAG | 57.384 | 43.478 | 24.49 | 0.20 | 46.85 | 3.18 |
8260 | 10933 | 3.933861 | AAGGCCTTCTACAATGGTAGG | 57.066 | 47.619 | 13.78 | 0.00 | 45.76 | 3.18 |
8261 | 10934 | 2.846950 | AGGCCTTCTACAATGGTAGGT | 58.153 | 47.619 | 0.00 | 0.00 | 45.76 | 3.08 |
8262 | 10935 | 2.505819 | AGGCCTTCTACAATGGTAGGTG | 59.494 | 50.000 | 0.00 | 1.16 | 45.76 | 4.00 |
8263 | 10936 | 2.289565 | GCCTTCTACAATGGTAGGTGC | 58.710 | 52.381 | 7.44 | 4.46 | 45.76 | 5.01 |
8264 | 10937 | 2.092914 | GCCTTCTACAATGGTAGGTGCT | 60.093 | 50.000 | 7.44 | 0.00 | 45.76 | 4.40 |
8265 | 10938 | 3.622455 | GCCTTCTACAATGGTAGGTGCTT | 60.622 | 47.826 | 7.44 | 0.00 | 45.76 | 3.91 |
8266 | 10939 | 4.383770 | GCCTTCTACAATGGTAGGTGCTTA | 60.384 | 45.833 | 7.44 | 0.00 | 45.76 | 3.09 |
8267 | 10940 | 5.741011 | CCTTCTACAATGGTAGGTGCTTAA | 58.259 | 41.667 | 7.44 | 0.00 | 45.76 | 1.85 |
8268 | 10941 | 5.817816 | CCTTCTACAATGGTAGGTGCTTAAG | 59.182 | 44.000 | 7.44 | 0.00 | 45.76 | 1.85 |
8269 | 10942 | 5.353394 | TCTACAATGGTAGGTGCTTAAGG | 57.647 | 43.478 | 7.44 | 0.00 | 45.76 | 2.69 |
8270 | 10943 | 5.027460 | TCTACAATGGTAGGTGCTTAAGGA | 58.973 | 41.667 | 7.44 | 0.00 | 45.76 | 3.36 |
8271 | 10944 | 4.222124 | ACAATGGTAGGTGCTTAAGGAG | 57.778 | 45.455 | 4.29 | 0.00 | 0.00 | 3.69 |
8272 | 10945 | 3.844211 | ACAATGGTAGGTGCTTAAGGAGA | 59.156 | 43.478 | 4.29 | 0.00 | 0.00 | 3.71 |
8273 | 10946 | 4.475016 | ACAATGGTAGGTGCTTAAGGAGAT | 59.525 | 41.667 | 4.29 | 0.00 | 0.00 | 2.75 |
8274 | 10947 | 4.696479 | ATGGTAGGTGCTTAAGGAGATG | 57.304 | 45.455 | 4.29 | 0.00 | 0.00 | 2.90 |
8275 | 10948 | 2.170607 | TGGTAGGTGCTTAAGGAGATGC | 59.829 | 50.000 | 4.29 | 0.00 | 0.00 | 3.91 |
8276 | 10949 | 2.436173 | GGTAGGTGCTTAAGGAGATGCT | 59.564 | 50.000 | 4.29 | 0.00 | 0.00 | 3.79 |
8277 | 10950 | 2.998316 | AGGTGCTTAAGGAGATGCTC | 57.002 | 50.000 | 4.29 | 0.00 | 0.00 | 4.26 |
8278 | 10951 | 2.191400 | AGGTGCTTAAGGAGATGCTCA | 58.809 | 47.619 | 4.29 | 0.00 | 31.08 | 4.26 |
8279 | 10952 | 2.170187 | AGGTGCTTAAGGAGATGCTCAG | 59.830 | 50.000 | 4.29 | 0.00 | 31.08 | 3.35 |
8280 | 10953 | 2.169352 | GGTGCTTAAGGAGATGCTCAGA | 59.831 | 50.000 | 4.29 | 0.00 | 31.08 | 3.27 |
8281 | 10954 | 3.369892 | GGTGCTTAAGGAGATGCTCAGAA | 60.370 | 47.826 | 4.29 | 0.00 | 31.08 | 3.02 |
8282 | 10955 | 4.256920 | GTGCTTAAGGAGATGCTCAGAAA | 58.743 | 43.478 | 4.29 | 0.00 | 31.08 | 2.52 |
8283 | 10956 | 4.697352 | GTGCTTAAGGAGATGCTCAGAAAA | 59.303 | 41.667 | 4.29 | 0.00 | 31.08 | 2.29 |
8284 | 10957 | 5.182001 | GTGCTTAAGGAGATGCTCAGAAAAA | 59.818 | 40.000 | 4.29 | 0.00 | 31.08 | 1.94 |
8285 | 10958 | 5.948162 | TGCTTAAGGAGATGCTCAGAAAAAT | 59.052 | 36.000 | 4.29 | 0.00 | 31.08 | 1.82 |
8286 | 10959 | 7.066284 | GTGCTTAAGGAGATGCTCAGAAAAATA | 59.934 | 37.037 | 4.29 | 0.00 | 31.08 | 1.40 |
8287 | 10960 | 7.611467 | TGCTTAAGGAGATGCTCAGAAAAATAA | 59.389 | 33.333 | 4.29 | 0.00 | 31.08 | 1.40 |
8288 | 10961 | 8.462016 | GCTTAAGGAGATGCTCAGAAAAATAAA | 58.538 | 33.333 | 4.29 | 0.00 | 31.08 | 1.40 |
8289 | 10962 | 9.780413 | CTTAAGGAGATGCTCAGAAAAATAAAC | 57.220 | 33.333 | 0.00 | 0.00 | 31.08 | 2.01 |
8290 | 10963 | 6.765915 | AGGAGATGCTCAGAAAAATAAACC | 57.234 | 37.500 | 0.00 | 0.00 | 31.08 | 3.27 |
8291 | 10964 | 5.355350 | AGGAGATGCTCAGAAAAATAAACCG | 59.645 | 40.000 | 0.00 | 0.00 | 31.08 | 4.44 |
8292 | 10965 | 5.449177 | GGAGATGCTCAGAAAAATAAACCGG | 60.449 | 44.000 | 0.00 | 0.00 | 31.08 | 5.28 |
8293 | 10966 | 3.569250 | TGCTCAGAAAAATAAACCGGC | 57.431 | 42.857 | 0.00 | 0.00 | 0.00 | 6.13 |
8294 | 10967 | 3.153919 | TGCTCAGAAAAATAAACCGGCT | 58.846 | 40.909 | 0.00 | 0.00 | 0.00 | 5.52 |
8295 | 10968 | 3.572255 | TGCTCAGAAAAATAAACCGGCTT | 59.428 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
8296 | 10969 | 4.038642 | TGCTCAGAAAAATAAACCGGCTTT | 59.961 | 37.500 | 0.00 | 4.17 | 0.00 | 3.51 |
8297 | 10970 | 4.988540 | GCTCAGAAAAATAAACCGGCTTTT | 59.011 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
8298 | 10971 | 5.107491 | GCTCAGAAAAATAAACCGGCTTTTG | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
8299 | 10972 | 5.908341 | TCAGAAAAATAAACCGGCTTTTGT | 58.092 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
8300 | 10973 | 5.751028 | TCAGAAAAATAAACCGGCTTTTGTG | 59.249 | 36.000 | 0.00 | 8.93 | 34.86 | 3.33 |
8301 | 10974 | 5.751028 | CAGAAAAATAAACCGGCTTTTGTGA | 59.249 | 36.000 | 0.00 | 0.00 | 35.28 | 3.58 |
8302 | 10975 | 6.256757 | CAGAAAAATAAACCGGCTTTTGTGAA | 59.743 | 34.615 | 0.00 | 0.00 | 35.28 | 3.18 |
8303 | 10976 | 6.478673 | AGAAAAATAAACCGGCTTTTGTGAAG | 59.521 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
8304 | 10977 | 2.785713 | TAAACCGGCTTTTGTGAAGC | 57.214 | 45.000 | 0.00 | 2.27 | 42.30 | 3.86 |
8305 | 10978 | 0.820871 | AAACCGGCTTTTGTGAAGCA | 59.179 | 45.000 | 0.00 | 0.00 | 44.71 | 3.91 |
8306 | 10979 | 0.102300 | AACCGGCTTTTGTGAAGCAC | 59.898 | 50.000 | 0.00 | 0.00 | 44.71 | 4.40 |
8307 | 10980 | 1.007387 | CCGGCTTTTGTGAAGCACC | 60.007 | 57.895 | 12.24 | 0.00 | 44.71 | 5.01 |
8308 | 10981 | 1.370414 | CGGCTTTTGTGAAGCACCG | 60.370 | 57.895 | 12.24 | 4.48 | 44.71 | 4.94 |
8309 | 10982 | 1.007387 | GGCTTTTGTGAAGCACCGG | 60.007 | 57.895 | 12.24 | 0.00 | 44.71 | 5.28 |
8310 | 10983 | 1.733526 | GCTTTTGTGAAGCACCGGT | 59.266 | 52.632 | 0.00 | 0.00 | 42.56 | 5.28 |
8311 | 10984 | 0.594796 | GCTTTTGTGAAGCACCGGTG | 60.595 | 55.000 | 30.66 | 30.66 | 42.56 | 4.94 |
8325 | 10998 | 4.091453 | CACCGGTGCTTATTTGTTAAGG | 57.909 | 45.455 | 24.02 | 0.00 | 38.21 | 2.69 |
8326 | 10999 | 3.754323 | CACCGGTGCTTATTTGTTAAGGA | 59.246 | 43.478 | 24.02 | 0.00 | 38.21 | 3.36 |
8327 | 11000 | 4.007659 | ACCGGTGCTTATTTGTTAAGGAG | 58.992 | 43.478 | 6.12 | 0.00 | 38.73 | 3.69 |
8328 | 11001 | 4.258543 | CCGGTGCTTATTTGTTAAGGAGA | 58.741 | 43.478 | 0.00 | 0.00 | 38.73 | 3.71 |
8329 | 11002 | 4.332819 | CCGGTGCTTATTTGTTAAGGAGAG | 59.667 | 45.833 | 0.00 | 0.00 | 38.73 | 3.20 |
8330 | 11003 | 5.175859 | CGGTGCTTATTTGTTAAGGAGAGA | 58.824 | 41.667 | 0.00 | 0.00 | 38.73 | 3.10 |
8331 | 11004 | 5.063564 | CGGTGCTTATTTGTTAAGGAGAGAC | 59.936 | 44.000 | 0.00 | 0.00 | 38.73 | 3.36 |
8332 | 11005 | 5.938125 | GGTGCTTATTTGTTAAGGAGAGACA | 59.062 | 40.000 | 0.00 | 0.00 | 38.73 | 3.41 |
8333 | 11006 | 6.128254 | GGTGCTTATTTGTTAAGGAGAGACAC | 60.128 | 42.308 | 0.00 | 0.00 | 38.73 | 3.67 |
8334 | 11007 | 5.938125 | TGCTTATTTGTTAAGGAGAGACACC | 59.062 | 40.000 | 0.00 | 0.00 | 38.21 | 4.16 |
8335 | 11008 | 6.174049 | GCTTATTTGTTAAGGAGAGACACCT | 58.826 | 40.000 | 0.00 | 0.00 | 38.21 | 4.00 |
8336 | 11009 | 7.038587 | TGCTTATTTGTTAAGGAGAGACACCTA | 60.039 | 37.037 | 0.00 | 0.00 | 38.21 | 3.08 |
8337 | 11010 | 7.822822 | GCTTATTTGTTAAGGAGAGACACCTAA | 59.177 | 37.037 | 0.00 | 0.00 | 38.21 | 2.69 |
8338 | 11011 | 9.892130 | CTTATTTGTTAAGGAGAGACACCTAAT | 57.108 | 33.333 | 0.00 | 0.00 | 36.67 | 1.73 |
8342 | 11015 | 9.720769 | TTTGTTAAGGAGAGACACCTAATTAAG | 57.279 | 33.333 | 0.00 | 0.00 | 36.67 | 1.85 |
8343 | 11016 | 8.431910 | TGTTAAGGAGAGACACCTAATTAAGT | 57.568 | 34.615 | 0.00 | 0.00 | 36.67 | 2.24 |
8344 | 11017 | 9.537852 | TGTTAAGGAGAGACACCTAATTAAGTA | 57.462 | 33.333 | 0.00 | 0.00 | 36.67 | 2.24 |
8349 | 11022 | 9.577222 | AGGAGAGACACCTAATTAAGTATCTAC | 57.423 | 37.037 | 9.54 | 9.54 | 34.26 | 2.59 |
8350 | 11023 | 8.795513 | GGAGAGACACCTAATTAAGTATCTACC | 58.204 | 40.741 | 0.00 | 0.30 | 33.20 | 3.18 |
8351 | 11024 | 8.709272 | AGAGACACCTAATTAAGTATCTACCC | 57.291 | 38.462 | 0.00 | 0.00 | 31.47 | 3.69 |
8352 | 11025 | 8.512813 | AGAGACACCTAATTAAGTATCTACCCT | 58.487 | 37.037 | 0.00 | 0.00 | 31.47 | 4.34 |
8353 | 11026 | 8.480133 | AGACACCTAATTAAGTATCTACCCTG | 57.520 | 38.462 | 0.00 | 0.00 | 0.00 | 4.45 |
8354 | 11027 | 8.066247 | AGACACCTAATTAAGTATCTACCCTGT | 58.934 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
8355 | 11028 | 9.359653 | GACACCTAATTAAGTATCTACCCTGTA | 57.640 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
8356 | 11029 | 9.140874 | ACACCTAATTAAGTATCTACCCTGTAC | 57.859 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
8357 | 11030 | 9.139734 | CACCTAATTAAGTATCTACCCTGTACA | 57.860 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
8358 | 11031 | 9.719433 | ACCTAATTAAGTATCTACCCTGTACAA | 57.281 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
8365 | 11038 | 7.670605 | AGTATCTACCCTGTACAAATAAGCA | 57.329 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
8366 | 11039 | 8.263854 | AGTATCTACCCTGTACAAATAAGCAT | 57.736 | 34.615 | 0.00 | 0.00 | 0.00 | 3.79 |
8367 | 11040 | 8.368668 | AGTATCTACCCTGTACAAATAAGCATC | 58.631 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
8368 | 11041 | 5.597806 | TCTACCCTGTACAAATAAGCATCG | 58.402 | 41.667 | 0.00 | 0.00 | 0.00 | 3.84 |
8369 | 11042 | 3.541632 | ACCCTGTACAAATAAGCATCGG | 58.458 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
8370 | 11043 | 3.054655 | ACCCTGTACAAATAAGCATCGGT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
8371 | 11044 | 3.312421 | CCCTGTACAAATAAGCATCGGTG | 59.688 | 47.826 | 0.00 | 0.00 | 0.00 | 4.94 |
8387 | 11060 | 6.182039 | CATCGGTGCTTAAGAAAAATCTGA | 57.818 | 37.500 | 6.67 | 0.00 | 0.00 | 3.27 |
8388 | 11061 | 6.789262 | CATCGGTGCTTAAGAAAAATCTGAT | 58.211 | 36.000 | 6.67 | 0.00 | 0.00 | 2.90 |
8389 | 11062 | 6.817765 | TCGGTGCTTAAGAAAAATCTGATT | 57.182 | 33.333 | 6.67 | 0.00 | 0.00 | 2.57 |
8390 | 11063 | 7.214467 | TCGGTGCTTAAGAAAAATCTGATTT | 57.786 | 32.000 | 9.76 | 9.76 | 0.00 | 2.17 |
8391 | 11064 | 8.330466 | TCGGTGCTTAAGAAAAATCTGATTTA | 57.670 | 30.769 | 15.45 | 0.00 | 0.00 | 1.40 |
8392 | 11065 | 8.956426 | TCGGTGCTTAAGAAAAATCTGATTTAT | 58.044 | 29.630 | 15.45 | 6.10 | 0.00 | 1.40 |
8393 | 11066 | 9.573133 | CGGTGCTTAAGAAAAATCTGATTTATT | 57.427 | 29.630 | 15.45 | 12.68 | 0.00 | 1.40 |
8408 | 11081 | 9.723601 | ATCTGATTTATTTCTCTAAGCATCTCC | 57.276 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
8409 | 11082 | 8.153550 | TCTGATTTATTTCTCTAAGCATCTCCC | 58.846 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
8410 | 11083 | 7.227156 | TGATTTATTTCTCTAAGCATCTCCCC | 58.773 | 38.462 | 0.00 | 0.00 | 0.00 | 4.81 |
8411 | 11084 | 6.831664 | TTTATTTCTCTAAGCATCTCCCCT | 57.168 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
8412 | 11085 | 7.931015 | TTTATTTCTCTAAGCATCTCCCCTA | 57.069 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
8413 | 11086 | 7.931015 | TTATTTCTCTAAGCATCTCCCCTAA | 57.069 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
8414 | 11087 | 5.878406 | TTTCTCTAAGCATCTCCCCTAAG | 57.122 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
8415 | 11088 | 3.235200 | TCTCTAAGCATCTCCCCTAAGC | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
8416 | 11089 | 2.968574 | CTCTAAGCATCTCCCCTAAGCA | 59.031 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
8417 | 11090 | 2.700897 | TCTAAGCATCTCCCCTAAGCAC | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
8418 | 11091 | 0.548510 | AAGCATCTCCCCTAAGCACC | 59.451 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
8419 | 11092 | 0.327000 | AGCATCTCCCCTAAGCACCT | 60.327 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
8420 | 11093 | 0.548510 | GCATCTCCCCTAAGCACCTT | 59.451 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
8421 | 11094 | 1.748591 | GCATCTCCCCTAAGCACCTTG | 60.749 | 57.143 | 0.00 | 0.00 | 0.00 | 3.61 |
8422 | 11095 | 0.548510 | ATCTCCCCTAAGCACCTTGC | 59.451 | 55.000 | 0.00 | 0.00 | 45.46 | 4.01 |
8439 | 11112 | 4.989279 | CTTGCATTGTACAAGGCCTAAT | 57.011 | 40.909 | 34.56 | 6.30 | 46.35 | 1.73 |
8441 | 11114 | 6.449635 | CTTGCATTGTACAAGGCCTAATAA | 57.550 | 37.500 | 34.56 | 23.08 | 46.35 | 1.40 |
8442 | 11115 | 5.828299 | TGCATTGTACAAGGCCTAATAAC | 57.172 | 39.130 | 34.56 | 11.91 | 46.35 | 1.89 |
8443 | 11116 | 5.257262 | TGCATTGTACAAGGCCTAATAACA | 58.743 | 37.500 | 34.56 | 16.22 | 46.35 | 2.41 |
8444 | 11117 | 5.124776 | TGCATTGTACAAGGCCTAATAACAC | 59.875 | 40.000 | 34.56 | 10.63 | 46.35 | 3.32 |
8445 | 11118 | 5.449999 | GCATTGTACAAGGCCTAATAACACC | 60.450 | 44.000 | 29.85 | 2.58 | 41.71 | 4.16 |
8446 | 11119 | 5.508280 | TTGTACAAGGCCTAATAACACCT | 57.492 | 39.130 | 5.16 | 0.00 | 0.00 | 4.00 |
8447 | 11120 | 6.623979 | TTGTACAAGGCCTAATAACACCTA | 57.376 | 37.500 | 5.16 | 0.00 | 0.00 | 3.08 |
8448 | 11121 | 6.623979 | TGTACAAGGCCTAATAACACCTAA | 57.376 | 37.500 | 5.16 | 0.00 | 0.00 | 2.69 |
8449 | 11122 | 7.018487 | TGTACAAGGCCTAATAACACCTAAA | 57.982 | 36.000 | 5.16 | 0.00 | 0.00 | 1.85 |
8450 | 11123 | 7.107542 | TGTACAAGGCCTAATAACACCTAAAG | 58.892 | 38.462 | 5.16 | 0.00 | 0.00 | 1.85 |
8451 | 11124 | 6.382919 | ACAAGGCCTAATAACACCTAAAGA | 57.617 | 37.500 | 5.16 | 0.00 | 0.00 | 2.52 |
8452 | 11125 | 6.786122 | ACAAGGCCTAATAACACCTAAAGAA | 58.214 | 36.000 | 5.16 | 0.00 | 0.00 | 2.52 |
8453 | 11126 | 6.657966 | ACAAGGCCTAATAACACCTAAAGAAC | 59.342 | 38.462 | 5.16 | 0.00 | 0.00 | 3.01 |
8454 | 11127 | 5.752650 | AGGCCTAATAACACCTAAAGAACC | 58.247 | 41.667 | 1.29 | 0.00 | 0.00 | 3.62 |
8455 | 11128 | 5.491439 | AGGCCTAATAACACCTAAAGAACCT | 59.509 | 40.000 | 1.29 | 0.00 | 0.00 | 3.50 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 0.814457 | TTGCACTGTGGTGTGTTTCC | 59.186 | 50.000 | 10.21 | 0.00 | 44.65 | 3.13 |
31 | 32 | 0.550914 | TTGAAGAGGGTGGTTGCACT | 59.449 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
42 | 43 | 7.066645 | TGCATATTCAGAACAAGATTGAAGAGG | 59.933 | 37.037 | 0.00 | 0.00 | 34.64 | 3.69 |
52 | 53 | 6.623486 | TGAATGGTTGCATATTCAGAACAAG | 58.377 | 36.000 | 14.08 | 0.00 | 38.12 | 3.16 |
75 | 76 | 0.328258 | AGGTTTGAACTCCCCGGATG | 59.672 | 55.000 | 0.73 | 0.00 | 0.00 | 3.51 |
114 | 115 | 9.567776 | TTTCAATGACTACACAATCCTAGAAAA | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
140 | 142 | 1.486211 | CGATCCTACCCAGGTTGTCT | 58.514 | 55.000 | 0.00 | 0.00 | 43.18 | 3.41 |
141 | 143 | 0.464452 | CCGATCCTACCCAGGTTGTC | 59.536 | 60.000 | 0.00 | 0.00 | 43.18 | 3.18 |
143 | 145 | 1.830145 | CCCGATCCTACCCAGGTTG | 59.170 | 63.158 | 0.00 | 0.00 | 43.18 | 3.77 |
144 | 146 | 2.070650 | GCCCGATCCTACCCAGGTT | 61.071 | 63.158 | 0.00 | 0.00 | 43.18 | 3.50 |
145 | 147 | 2.446036 | GCCCGATCCTACCCAGGT | 60.446 | 66.667 | 0.00 | 0.00 | 43.18 | 4.00 |
151 | 153 | 2.224305 | ACTTGCTTATGCCCGATCCTAC | 60.224 | 50.000 | 0.00 | 0.00 | 38.71 | 3.18 |
174 | 176 | 4.229096 | GTTGTATGCACTGTTTGGATGTG | 58.771 | 43.478 | 0.00 | 0.00 | 36.80 | 3.21 |
186 | 188 | 2.574322 | CTCTGCGTTTGTTGTATGCAC | 58.426 | 47.619 | 0.00 | 0.00 | 34.11 | 4.57 |
285 | 299 | 3.149005 | TGGGCGGATCTTTTGTTAAGT | 57.851 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
287 | 301 | 3.257127 | CCTTTGGGCGGATCTTTTGTTAA | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
296 | 310 | 1.313091 | GGTGTTCCTTTGGGCGGATC | 61.313 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
297 | 311 | 1.304134 | GGTGTTCCTTTGGGCGGAT | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
298 | 312 | 2.114411 | GGTGTTCCTTTGGGCGGA | 59.886 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
300 | 314 | 2.268076 | CCTGGTGTTCCTTTGGGCG | 61.268 | 63.158 | 0.00 | 0.00 | 34.23 | 6.13 |
301 | 315 | 0.251787 | ATCCTGGTGTTCCTTTGGGC | 60.252 | 55.000 | 0.00 | 0.00 | 34.23 | 5.36 |
333 | 347 | 1.189884 | CCAAAAGCATTTGTGAACGCG | 59.810 | 47.619 | 12.94 | 3.53 | 43.59 | 6.01 |
365 | 379 | 9.396022 | GGTAACCAGCACATTTAGCATATATAT | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
366 | 380 | 8.379331 | TGGTAACCAGCACATTTAGCATATATA | 58.621 | 33.333 | 0.00 | 0.00 | 30.34 | 0.86 |
368 | 382 | 6.596621 | TGGTAACCAGCACATTTAGCATATA | 58.403 | 36.000 | 0.00 | 0.00 | 30.34 | 0.86 |
373 | 387 | 4.638421 | TGTATGGTAACCAGCACATTTAGC | 59.362 | 41.667 | 0.00 | 0.00 | 36.75 | 3.09 |
383 | 397 | 7.229306 | ACAAAGCATATCATGTATGGTAACCAG | 59.771 | 37.037 | 15.54 | 9.49 | 36.75 | 4.00 |
384 | 398 | 7.059788 | ACAAAGCATATCATGTATGGTAACCA | 58.940 | 34.615 | 15.54 | 0.00 | 34.93 | 3.67 |
385 | 399 | 7.510549 | ACAAAGCATATCATGTATGGTAACC | 57.489 | 36.000 | 15.54 | 0.00 | 34.93 | 2.85 |
460 | 474 | 9.233232 | GACTATGTTGTGTTTCTTAGGTTTTTG | 57.767 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
463 | 477 | 8.747538 | AAGACTATGTTGTGTTTCTTAGGTTT | 57.252 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
483 | 497 | 7.266922 | TGTGCTTATTAAACGGAAAAAGACT | 57.733 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
484 | 498 | 7.917720 | TTGTGCTTATTAAACGGAAAAAGAC | 57.082 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
486 | 500 | 8.514136 | TGATTGTGCTTATTAAACGGAAAAAG | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
498 | 512 | 9.582431 | CATCTTTGAATTCTGATTGTGCTTATT | 57.418 | 29.630 | 7.05 | 0.00 | 0.00 | 1.40 |
506 | 520 | 8.380644 | GTGATTTGCATCTTTGAATTCTGATTG | 58.619 | 33.333 | 7.05 | 0.02 | 0.00 | 2.67 |
507 | 521 | 7.274904 | CGTGATTTGCATCTTTGAATTCTGATT | 59.725 | 33.333 | 7.05 | 0.00 | 0.00 | 2.57 |
510 | 524 | 5.860182 | ACGTGATTTGCATCTTTGAATTCTG | 59.140 | 36.000 | 7.05 | 0.00 | 0.00 | 3.02 |
511 | 525 | 6.017400 | ACGTGATTTGCATCTTTGAATTCT | 57.983 | 33.333 | 7.05 | 0.00 | 0.00 | 2.40 |
598 | 613 | 2.548904 | GCTGCATTTTTGTTTGGCATCA | 59.451 | 40.909 | 0.00 | 0.00 | 33.50 | 3.07 |
611 | 626 | 3.743521 | TGTCAAGTGACTAGCTGCATTT | 58.256 | 40.909 | 12.43 | 0.00 | 44.99 | 2.32 |
616 | 631 | 3.069289 | TGCAATGTCAAGTGACTAGCTG | 58.931 | 45.455 | 12.43 | 5.86 | 44.99 | 4.24 |
675 | 690 | 5.048504 | ACTGCCATGCTTCGATTAATTATGG | 60.049 | 40.000 | 0.00 | 0.00 | 35.27 | 2.74 |
685 | 703 | 0.036483 | TTGCTACTGCCATGCTTCGA | 60.036 | 50.000 | 0.00 | 0.00 | 38.71 | 3.71 |
718 | 736 | 1.302511 | GAACAGGTCATGTGCGGGT | 60.303 | 57.895 | 0.00 | 0.00 | 43.00 | 5.28 |
757 | 775 | 4.368315 | TGTGATTTCCGATCGTGGATTAG | 58.632 | 43.478 | 15.09 | 0.00 | 38.00 | 1.73 |
1255 | 1278 | 1.393487 | GGAGTACCTCGGAGGAAGGC | 61.393 | 65.000 | 30.13 | 15.31 | 37.67 | 4.35 |
1400 | 1428 | 3.043586 | GGACAGTATATCGCGAACACTG | 58.956 | 50.000 | 30.47 | 30.47 | 41.83 | 3.66 |
1407 | 1435 | 3.164358 | CAAGATCGGACAGTATATCGCG | 58.836 | 50.000 | 0.00 | 0.00 | 0.00 | 5.87 |
1418 | 1446 | 4.806247 | CACCAGAATCTTACAAGATCGGAC | 59.194 | 45.833 | 16.18 | 6.32 | 44.67 | 4.79 |
1427 | 1455 | 2.631062 | ACACCGACACCAGAATCTTACA | 59.369 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
1437 | 1465 | 1.334160 | ACAGATACACACCGACACCA | 58.666 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1528 | 1556 | 1.165270 | ACTTGAAAGCCCATGCGTAC | 58.835 | 50.000 | 0.00 | 0.00 | 44.33 | 3.67 |
1531 | 1559 | 1.534595 | GCATACTTGAAAGCCCATGCG | 60.535 | 52.381 | 8.31 | 0.00 | 44.33 | 4.73 |
1532 | 1560 | 1.202452 | GGCATACTTGAAAGCCCATGC | 60.202 | 52.381 | 12.81 | 12.81 | 41.25 | 4.06 |
1533 | 1561 | 2.877043 | GGCATACTTGAAAGCCCATG | 57.123 | 50.000 | 0.00 | 0.00 | 41.25 | 3.66 |
1543 | 1571 | 8.147058 | AGTCAGATGATAACTAAGGCATACTTG | 58.853 | 37.037 | 0.00 | 0.00 | 40.37 | 3.16 |
1544 | 1572 | 8.256356 | AGTCAGATGATAACTAAGGCATACTT | 57.744 | 34.615 | 0.00 | 0.00 | 43.28 | 2.24 |
1579 | 1610 | 5.572896 | GTGCATACATTTTGGCAAGAGTAAC | 59.427 | 40.000 | 0.00 | 3.41 | 38.10 | 2.50 |
1608 | 1639 | 6.130298 | TCAACAGTTTGTAATGTCACAAGG | 57.870 | 37.500 | 0.00 | 0.00 | 39.46 | 3.61 |
1610 | 1641 | 7.700234 | GTGATTCAACAGTTTGTAATGTCACAA | 59.300 | 33.333 | 0.00 | 0.00 | 36.65 | 3.33 |
1615 | 1646 | 5.212194 | GCGTGATTCAACAGTTTGTAATGT | 58.788 | 37.500 | 0.00 | 0.00 | 34.02 | 2.71 |
1622 | 1653 | 2.622942 | ACATGGCGTGATTCAACAGTTT | 59.377 | 40.909 | 14.82 | 0.00 | 0.00 | 2.66 |
1629 | 1660 | 3.565902 | TGTTGTTTACATGGCGTGATTCA | 59.434 | 39.130 | 14.82 | 4.35 | 0.00 | 2.57 |
1632 | 1663 | 3.316588 | TGTTGTTGTTTACATGGCGTGAT | 59.683 | 39.130 | 14.82 | 0.27 | 36.44 | 3.06 |
1636 | 1667 | 3.360463 | CGATTGTTGTTGTTTACATGGCG | 59.640 | 43.478 | 0.00 | 0.00 | 36.44 | 5.69 |
1638 | 1669 | 3.360463 | CGCGATTGTTGTTGTTTACATGG | 59.640 | 43.478 | 0.00 | 0.00 | 36.44 | 3.66 |
1642 | 1673 | 3.868835 | AGTCGCGATTGTTGTTGTTTAC | 58.131 | 40.909 | 14.06 | 0.00 | 0.00 | 2.01 |
1648 | 1679 | 1.070843 | CGTTGAGTCGCGATTGTTGTT | 60.071 | 47.619 | 14.06 | 0.00 | 0.00 | 2.83 |
1658 | 1689 | 0.389948 | ATCCCTGAACGTTGAGTCGC | 60.390 | 55.000 | 13.79 | 0.00 | 0.00 | 5.19 |
1659 | 1690 | 1.350193 | CATCCCTGAACGTTGAGTCG | 58.650 | 55.000 | 13.79 | 3.60 | 0.00 | 4.18 |
1669 | 1700 | 0.327867 | ATCCTGGCTCCATCCCTGAA | 60.328 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1671 | 1702 | 1.058428 | TCATCCTGGCTCCATCCCTG | 61.058 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1673 | 1704 | 0.552848 | TTTCATCCTGGCTCCATCCC | 59.447 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2005 | 2036 | 6.795399 | AGGTAATGAAACAACAGTTTGTCAG | 58.205 | 36.000 | 0.00 | 0.00 | 45.69 | 3.51 |
2016 | 2047 | 8.418597 | ACTCTGAGTAGTAGGTAATGAAACAA | 57.581 | 34.615 | 8.91 | 0.00 | 0.00 | 2.83 |
2085 | 2116 | 0.815095 | TAGCGCTGATGTTTCTCGGA | 59.185 | 50.000 | 22.90 | 0.00 | 0.00 | 4.55 |
2375 | 2406 | 7.174107 | AGTTTTGTTGAGCTATATTGCCAAT | 57.826 | 32.000 | 5.48 | 0.00 | 0.00 | 3.16 |
2411 | 2442 | 5.870978 | CACCAATCAGGATTTCAAATCAACC | 59.129 | 40.000 | 12.27 | 0.00 | 41.22 | 3.77 |
2472 | 2504 | 3.302365 | AGCAATTTAAAGCGTGCATGT | 57.698 | 38.095 | 18.25 | 0.00 | 39.50 | 3.21 |
2473 | 2505 | 5.276489 | CCAATAGCAATTTAAAGCGTGCATG | 60.276 | 40.000 | 18.25 | 0.09 | 39.50 | 4.06 |
2516 | 2549 | 6.841781 | ACATTATACAGTAAAGGGGGTCAT | 57.158 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2553 | 2586 | 4.394300 | AGCAAATCTGAAGGAAAGATCACG | 59.606 | 41.667 | 0.00 | 0.00 | 33.17 | 4.35 |
2593 | 2627 | 5.505181 | AAGAGGAAGCAGGACATTTAGAA | 57.495 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2726 | 2760 | 7.865385 | GGCAATTTTACGAATATCTGCCAATAA | 59.135 | 33.333 | 12.94 | 0.00 | 45.91 | 1.40 |
2788 | 2822 | 9.403110 | TGAGTTTCGTCTTCAAGTATTACTTAC | 57.597 | 33.333 | 8.71 | 3.46 | 36.03 | 2.34 |
2789 | 2823 | 9.622004 | CTGAGTTTCGTCTTCAAGTATTACTTA | 57.378 | 33.333 | 8.71 | 0.00 | 36.03 | 2.24 |
2790 | 2824 | 7.116519 | GCTGAGTTTCGTCTTCAAGTATTACTT | 59.883 | 37.037 | 3.16 | 3.16 | 39.39 | 2.24 |
2791 | 2825 | 6.586844 | GCTGAGTTTCGTCTTCAAGTATTACT | 59.413 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
3187 | 3223 | 0.944386 | CTTATGCGGGTCGGGATTTG | 59.056 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3266 | 3302 | 1.792115 | ACGGGTTGATTATACGGGGA | 58.208 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
3474 | 3627 | 4.951963 | CTCCTTCGATCCGGCCGC | 62.952 | 72.222 | 22.85 | 5.18 | 0.00 | 6.53 |
3580 | 3858 | 4.171103 | GTCCAATAGCCGGCCGGT | 62.171 | 66.667 | 42.53 | 30.68 | 37.65 | 5.28 |
3783 | 4102 | 4.330894 | CCTTAAAATCGTCCGACCCTTAAC | 59.669 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
3949 | 4269 | 8.469200 | CATCCCTGCAACTCAAAGATATTAAAA | 58.531 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
4273 | 4596 | 5.253096 | AGTTCCATTGTAATTGTAGGGTCCT | 59.747 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4355 | 4678 | 2.479566 | ACCATACAGCTGTGAGTTGG | 57.520 | 50.000 | 29.57 | 27.19 | 30.10 | 3.77 |
4471 | 4794 | 5.488341 | TGATACATGCATCCAGAGATCATG | 58.512 | 41.667 | 0.00 | 0.00 | 40.32 | 3.07 |
4600 | 4926 | 4.047142 | CCTGAAGCAAAGAAACTTTGAGC | 58.953 | 43.478 | 22.74 | 11.71 | 0.00 | 4.26 |
4604 | 4930 | 7.823799 | TGAAAAATCCTGAAGCAAAGAAACTTT | 59.176 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4684 | 5010 | 8.376203 | CAAGAACATACTCTAGAATTTGACACG | 58.624 | 37.037 | 0.00 | 0.00 | 0.00 | 4.49 |
4732 | 5058 | 5.300286 | CCTGATGGGATTCAAACCTAATGAC | 59.700 | 44.000 | 0.00 | 0.00 | 37.23 | 3.06 |
4867 | 5193 | 4.080695 | AGCTAATTCTTGATCCTGCACTCA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4899 | 5225 | 3.686016 | GTTTCTAAACCAGCCCTGATGA | 58.314 | 45.455 | 0.00 | 0.00 | 32.82 | 2.92 |
4967 | 5454 | 1.272807 | TTTTGGGACGGAGGGAGTAG | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4968 | 5455 | 1.961133 | ATTTTGGGACGGAGGGAGTA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4969 | 5456 | 1.961133 | TATTTTGGGACGGAGGGAGT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4970 | 5457 | 2.238898 | ACTTATTTTGGGACGGAGGGAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4971 | 5458 | 2.026636 | CACTTATTTTGGGACGGAGGGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4972 | 5459 | 2.026636 | TCACTTATTTTGGGACGGAGGG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4973 | 5460 | 3.007635 | GTCACTTATTTTGGGACGGAGG | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4974 | 5461 | 3.933332 | GAGTCACTTATTTTGGGACGGAG | 59.067 | 47.826 | 0.00 | 0.00 | 33.84 | 4.63 |
4975 | 5462 | 3.325425 | TGAGTCACTTATTTTGGGACGGA | 59.675 | 43.478 | 0.00 | 0.00 | 33.84 | 4.69 |
4976 | 5463 | 3.670625 | TGAGTCACTTATTTTGGGACGG | 58.329 | 45.455 | 0.00 | 0.00 | 33.84 | 4.79 |
4977 | 5464 | 4.755123 | AGTTGAGTCACTTATTTTGGGACG | 59.245 | 41.667 | 0.00 | 0.00 | 33.84 | 4.79 |
4978 | 5465 | 6.635030 | AAGTTGAGTCACTTATTTTGGGAC | 57.365 | 37.500 | 0.00 | 0.00 | 35.10 | 4.46 |
4979 | 5466 | 6.605594 | ACAAAGTTGAGTCACTTATTTTGGGA | 59.394 | 34.615 | 12.94 | 0.00 | 35.87 | 4.37 |
4980 | 5467 | 6.805713 | ACAAAGTTGAGTCACTTATTTTGGG | 58.194 | 36.000 | 12.94 | 0.00 | 35.87 | 4.12 |
4981 | 5468 | 8.402472 | TGTACAAAGTTGAGTCACTTATTTTGG | 58.598 | 33.333 | 12.94 | 0.78 | 35.87 | 3.28 |
4982 | 5469 | 9.781834 | TTGTACAAAGTTGAGTCACTTATTTTG | 57.218 | 29.630 | 5.64 | 8.80 | 35.87 | 2.44 |
5002 | 5489 | 7.270047 | ACTCAACTTTGTACTAGCTTTGTACA | 58.730 | 34.615 | 21.04 | 21.04 | 45.56 | 2.90 |
5003 | 5490 | 7.437267 | TGACTCAACTTTGTACTAGCTTTGTAC | 59.563 | 37.037 | 17.52 | 17.52 | 40.27 | 2.90 |
5004 | 5491 | 7.437267 | GTGACTCAACTTTGTACTAGCTTTGTA | 59.563 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
5005 | 5492 | 6.258068 | GTGACTCAACTTTGTACTAGCTTTGT | 59.742 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
5006 | 5493 | 6.480320 | AGTGACTCAACTTTGTACTAGCTTTG | 59.520 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
5007 | 5494 | 6.583562 | AGTGACTCAACTTTGTACTAGCTTT | 58.416 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5008 | 5495 | 6.163135 | AGTGACTCAACTTTGTACTAGCTT | 57.837 | 37.500 | 0.00 | 0.00 | 0.00 | 3.74 |
5009 | 5496 | 5.793030 | AGTGACTCAACTTTGTACTAGCT | 57.207 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
5010 | 5497 | 8.535690 | AATAAGTGACTCAACTTTGTACTAGC | 57.464 | 34.615 | 0.00 | 0.00 | 40.77 | 3.42 |
5013 | 5500 | 8.621286 | CCAAAATAAGTGACTCAACTTTGTACT | 58.379 | 33.333 | 0.00 | 0.00 | 40.77 | 2.73 |
5014 | 5501 | 7.860872 | CCCAAAATAAGTGACTCAACTTTGTAC | 59.139 | 37.037 | 0.00 | 0.00 | 40.77 | 2.90 |
5015 | 5502 | 7.776030 | TCCCAAAATAAGTGACTCAACTTTGTA | 59.224 | 33.333 | 0.00 | 0.00 | 40.77 | 2.41 |
5016 | 5503 | 6.605594 | TCCCAAAATAAGTGACTCAACTTTGT | 59.394 | 34.615 | 0.00 | 0.00 | 40.77 | 2.83 |
5017 | 5504 | 6.918022 | GTCCCAAAATAAGTGACTCAACTTTG | 59.082 | 38.462 | 0.00 | 0.00 | 40.77 | 2.77 |
5018 | 5505 | 6.238648 | CGTCCCAAAATAAGTGACTCAACTTT | 60.239 | 38.462 | 0.00 | 0.00 | 40.77 | 2.66 |
5019 | 5506 | 5.238650 | CGTCCCAAAATAAGTGACTCAACTT | 59.761 | 40.000 | 0.00 | 0.00 | 42.89 | 2.66 |
5020 | 5507 | 4.755123 | CGTCCCAAAATAAGTGACTCAACT | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
5021 | 5508 | 4.083484 | CCGTCCCAAAATAAGTGACTCAAC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
5022 | 5509 | 4.069304 | CCGTCCCAAAATAAGTGACTCAA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5023 | 5510 | 3.325425 | TCCGTCCCAAAATAAGTGACTCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
5024 | 5511 | 3.933332 | CTCCGTCCCAAAATAAGTGACTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
5025 | 5512 | 3.307480 | CCTCCGTCCCAAAATAAGTGACT | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
5026 | 5513 | 3.007635 | CCTCCGTCCCAAAATAAGTGAC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5027 | 5514 | 2.026636 | CCCTCCGTCCCAAAATAAGTGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5028 | 5515 | 2.026636 | TCCCTCCGTCCCAAAATAAGTG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5029 | 5516 | 2.238898 | CTCCCTCCGTCCCAAAATAAGT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5030 | 5517 | 2.238898 | ACTCCCTCCGTCCCAAAATAAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5031 | 5518 | 2.271777 | ACTCCCTCCGTCCCAAAATAA | 58.728 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
5032 | 5519 | 1.961133 | ACTCCCTCCGTCCCAAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5033 | 5520 | 1.961133 | TACTCCCTCCGTCCCAAAAT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5034 | 5521 | 1.961133 | ATACTCCCTCCGTCCCAAAA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5035 | 5522 | 1.961133 | AATACTCCCTCCGTCCCAAA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
5036 | 5523 | 1.961133 | AAATACTCCCTCCGTCCCAA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
5037 | 5524 | 2.292389 | TGTAAATACTCCCTCCGTCCCA | 60.292 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
5038 | 5525 | 2.391678 | TGTAAATACTCCCTCCGTCCC | 58.608 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
5039 | 5526 | 4.684484 | AATGTAAATACTCCCTCCGTCC | 57.316 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
5040 | 5527 | 5.296035 | CCAAAATGTAAATACTCCCTCCGTC | 59.704 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5041 | 5528 | 5.045432 | TCCAAAATGTAAATACTCCCTCCGT | 60.045 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5042 | 5529 | 5.433526 | TCCAAAATGTAAATACTCCCTCCG | 58.566 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
5043 | 5530 | 7.780271 | AGATTCCAAAATGTAAATACTCCCTCC | 59.220 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
5044 | 5531 | 8.753497 | AGATTCCAAAATGTAAATACTCCCTC | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
5045 | 5532 | 9.853177 | CTAGATTCCAAAATGTAAATACTCCCT | 57.147 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
5046 | 5533 | 9.847224 | TCTAGATTCCAAAATGTAAATACTCCC | 57.153 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
5128 | 5615 | 0.824595 | AGCATGTCACTTGGCAAGCA | 60.825 | 50.000 | 26.45 | 16.72 | 45.57 | 3.91 |
5199 | 5686 | 1.814394 | TCCGAAAGAGTTAGCGCAGTA | 59.186 | 47.619 | 11.47 | 0.00 | 0.00 | 2.74 |
5365 | 5852 | 6.014242 | AGTTCTCATTACTGACTCAACATCCA | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
5366 | 5853 | 6.312426 | CAGTTCTCATTACTGACTCAACATCC | 59.688 | 42.308 | 0.00 | 0.00 | 44.52 | 3.51 |
5410 | 5897 | 6.321717 | CAAATGATTTAGCTTACCGCAAGAA | 58.678 | 36.000 | 0.00 | 0.00 | 42.61 | 2.52 |
5480 | 5972 | 7.730364 | ACACTGAAGAAACGATAACTTCATT | 57.270 | 32.000 | 12.75 | 7.30 | 45.34 | 2.57 |
5542 | 6034 | 7.725397 | CCCATTGGAGATTCTTACATGGAATAA | 59.275 | 37.037 | 3.62 | 0.00 | 34.09 | 1.40 |
5543 | 6035 | 7.233632 | CCCATTGGAGATTCTTACATGGAATA | 58.766 | 38.462 | 3.62 | 0.00 | 34.09 | 1.75 |
5544 | 6036 | 6.073314 | CCCATTGGAGATTCTTACATGGAAT | 58.927 | 40.000 | 3.62 | 0.00 | 36.29 | 3.01 |
5545 | 6037 | 5.448654 | CCCATTGGAGATTCTTACATGGAA | 58.551 | 41.667 | 3.62 | 0.00 | 0.00 | 3.53 |
5546 | 6038 | 4.689705 | GCCCATTGGAGATTCTTACATGGA | 60.690 | 45.833 | 3.62 | 0.00 | 0.00 | 3.41 |
5559 | 6051 | 1.308069 | CGGTCACTTGCCCATTGGAG | 61.308 | 60.000 | 3.62 | 0.00 | 0.00 | 3.86 |
5601 | 6093 | 6.839124 | TGAATGAATATTTGTGGAAGCACT | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
5636 | 6129 | 3.763360 | TCCATACAAGCATGTTTTCCCAG | 59.237 | 43.478 | 0.00 | 0.00 | 41.05 | 4.45 |
5690 | 6183 | 8.677148 | TGCTACTCTTGTGGATATTTAAATCC | 57.323 | 34.615 | 3.39 | 2.28 | 44.96 | 3.01 |
5707 | 6200 | 9.755122 | TTATCCTACATACATACATGCTACTCT | 57.245 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
5796 | 6295 | 8.934973 | GTGTAACTGAAGCACTAAAATAACTG | 57.065 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
5978 | 6478 | 5.171476 | TCAGAAGAAAGCAAGAGGTAATCG | 58.829 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
6016 | 6516 | 7.334671 | CAGAATCTCCTAAACCTTTGTCTAACC | 59.665 | 40.741 | 0.00 | 0.00 | 0.00 | 2.85 |
6176 | 6676 | 7.778853 | ACCTTCGTCTAACTATAAGAATCCTGA | 59.221 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
6320 | 6820 | 5.112686 | ACTTTAGCTCTTCCGATCAATCAC | 58.887 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
6336 | 6836 | 2.010497 | GAGGCAGCCAGTAACTTTAGC | 58.990 | 52.381 | 15.80 | 0.00 | 0.00 | 3.09 |
6393 | 6893 | 3.009143 | ACGGCAGAATCTCCTAAACCTTT | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 3.11 |
6442 | 6942 | 5.481105 | ACATTCAAACATGCCACCTAAATG | 58.519 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
6603 | 7103 | 2.673368 | CAACCCGTAGATTTGTCTCTGC | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
6654 | 7154 | 1.400846 | CTGATGGCTAAGCTGCTGTTG | 59.599 | 52.381 | 1.35 | 0.00 | 0.00 | 3.33 |
6793 | 7293 | 7.192852 | ACAAGGTGAAACTAGATGAGATCAT | 57.807 | 36.000 | 0.00 | 0.00 | 36.64 | 2.45 |
6807 | 7307 | 5.468746 | CGAGGAAACTATGAACAAGGTGAAA | 59.531 | 40.000 | 0.00 | 0.00 | 44.43 | 2.69 |
7106 | 9555 | 9.956720 | AAACTTGAAATTTGAGTAAGTGATCAG | 57.043 | 29.630 | 0.00 | 0.00 | 32.42 | 2.90 |
7114 | 9563 | 9.974980 | GGTGGATAAAACTTGAAATTTGAGTAA | 57.025 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
7115 | 9564 | 9.362151 | AGGTGGATAAAACTTGAAATTTGAGTA | 57.638 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
7116 | 9565 | 8.250143 | AGGTGGATAAAACTTGAAATTTGAGT | 57.750 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
7117 | 9566 | 9.546428 | AAAGGTGGATAAAACTTGAAATTTGAG | 57.454 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
7118 | 9567 | 9.898152 | AAAAGGTGGATAAAACTTGAAATTTGA | 57.102 | 25.926 | 0.00 | 0.00 | 0.00 | 2.69 |
7124 | 9573 | 9.757227 | CAACATAAAAGGTGGATAAAACTTGAA | 57.243 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
7125 | 9574 | 7.870445 | GCAACATAAAAGGTGGATAAAACTTGA | 59.130 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
7126 | 9575 | 7.872483 | AGCAACATAAAAGGTGGATAAAACTTG | 59.128 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
7127 | 9576 | 7.962441 | AGCAACATAAAAGGTGGATAAAACTT | 58.038 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
7128 | 9577 | 7.539034 | AGCAACATAAAAGGTGGATAAAACT | 57.461 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
7129 | 9578 | 8.601845 | AAAGCAACATAAAAGGTGGATAAAAC | 57.398 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
7130 | 9579 | 9.267084 | GAAAAGCAACATAAAAGGTGGATAAAA | 57.733 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
7131 | 9580 | 8.424918 | TGAAAAGCAACATAAAAGGTGGATAAA | 58.575 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
7132 | 9581 | 7.957002 | TGAAAAGCAACATAAAAGGTGGATAA | 58.043 | 30.769 | 0.00 | 0.00 | 0.00 | 1.75 |
7157 | 9606 | 7.320384 | TCAATGTGGTGATGGTGATATCTAT | 57.680 | 36.000 | 3.98 | 0.00 | 0.00 | 1.98 |
7183 | 9632 | 1.143277 | TCAAAGGCCGGTTGAGGTTAA | 59.857 | 47.619 | 17.93 | 0.00 | 31.45 | 2.01 |
7206 | 9655 | 4.505191 | CACTTGCAACCTGTGAATTTGAAG | 59.495 | 41.667 | 10.89 | 0.00 | 33.95 | 3.02 |
7261 | 9710 | 6.605995 | TGAAGAGAACGATTAGATAGGAACCA | 59.394 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
7276 | 9725 | 7.273815 | GTGATTACTAGGAAACTGAAGAGAACG | 59.726 | 40.741 | 0.00 | 0.00 | 43.88 | 3.95 |
7313 | 9762 | 7.106890 | TGTTTACAGAAATGAATCGGTCCATA | 58.893 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
7314 | 9763 | 5.943416 | TGTTTACAGAAATGAATCGGTCCAT | 59.057 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
7385 | 9834 | 1.949847 | ATCGTCGAGGCCCTGTTCAG | 61.950 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
7466 | 9915 | 9.577110 | CTCCTCGTTACTAATACACAAAACATA | 57.423 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
7819 | 10269 | 5.122869 | TGCTTTGAGTGTATTCAGAAGATGC | 59.877 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
7849 | 10299 | 5.636903 | ACAAGGTATATGAAGCAGGATGT | 57.363 | 39.130 | 0.00 | 0.00 | 39.31 | 3.06 |
7923 | 10375 | 9.277783 | ACATCTAAATCCTATGTCATTGCTTAC | 57.722 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
7993 | 10445 | 2.199236 | GTAAACCTCCGTGATTAGCCG | 58.801 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
8004 | 10456 | 6.925718 | ACTAAAACTTCGTACTGTAAACCTCC | 59.074 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
8025 | 10698 | 5.626142 | TGACACCCTGCTTAATTTGACTAA | 58.374 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
8029 | 10702 | 4.724399 | TCTTGACACCCTGCTTAATTTGA | 58.276 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
8059 | 10732 | 1.140312 | TTGAGAGGCCAACAGACCTT | 58.860 | 50.000 | 5.01 | 0.00 | 36.05 | 3.50 |
8196 | 10869 | 7.504238 | ACATAGATAGCACTACCTATATCCTGC | 59.496 | 40.741 | 0.00 | 0.00 | 0.00 | 4.85 |
8206 | 10879 | 5.461032 | AGCTCAACATAGATAGCACTACC | 57.539 | 43.478 | 0.00 | 0.00 | 37.44 | 3.18 |
8218 | 10891 | 7.417570 | GCCTTACTTCCTTAGTAGCTCAACATA | 60.418 | 40.741 | 0.00 | 0.00 | 40.35 | 2.29 |
8232 | 10905 | 5.501156 | CATTGTAGAAGGCCTTACTTCCTT | 58.499 | 41.667 | 20.54 | 0.00 | 46.24 | 3.36 |
8233 | 10906 | 4.080299 | CCATTGTAGAAGGCCTTACTTCCT | 60.080 | 45.833 | 20.54 | 13.49 | 46.24 | 3.36 |
8234 | 10907 | 4.200092 | CCATTGTAGAAGGCCTTACTTCC | 58.800 | 47.826 | 20.54 | 5.36 | 46.24 | 3.46 |
8235 | 10908 | 4.844884 | ACCATTGTAGAAGGCCTTACTTC | 58.155 | 43.478 | 20.54 | 14.88 | 45.59 | 3.01 |
8236 | 10909 | 4.929146 | ACCATTGTAGAAGGCCTTACTT | 57.071 | 40.909 | 20.54 | 9.93 | 0.00 | 2.24 |
8237 | 10910 | 4.409247 | CCTACCATTGTAGAAGGCCTTACT | 59.591 | 45.833 | 20.54 | 18.81 | 46.18 | 2.24 |
8238 | 10911 | 4.163649 | ACCTACCATTGTAGAAGGCCTTAC | 59.836 | 45.833 | 20.54 | 15.00 | 46.18 | 2.34 |
8239 | 10912 | 4.163458 | CACCTACCATTGTAGAAGGCCTTA | 59.837 | 45.833 | 20.54 | 1.80 | 46.18 | 2.69 |
8240 | 10913 | 3.054361 | CACCTACCATTGTAGAAGGCCTT | 60.054 | 47.826 | 20.65 | 20.65 | 46.18 | 4.35 |
8241 | 10914 | 2.505819 | CACCTACCATTGTAGAAGGCCT | 59.494 | 50.000 | 0.00 | 0.00 | 46.18 | 5.19 |
8242 | 10915 | 2.919228 | CACCTACCATTGTAGAAGGCC | 58.081 | 52.381 | 5.55 | 0.00 | 46.18 | 5.19 |
8243 | 10916 | 2.092914 | AGCACCTACCATTGTAGAAGGC | 60.093 | 50.000 | 5.55 | 6.08 | 46.18 | 4.35 |
8244 | 10917 | 3.914426 | AGCACCTACCATTGTAGAAGG | 57.086 | 47.619 | 5.55 | 0.00 | 46.18 | 3.46 |
8245 | 10918 | 5.817816 | CCTTAAGCACCTACCATTGTAGAAG | 59.182 | 44.000 | 5.55 | 0.86 | 46.18 | 2.85 |
8246 | 10919 | 5.486063 | TCCTTAAGCACCTACCATTGTAGAA | 59.514 | 40.000 | 5.55 | 0.00 | 46.18 | 2.10 |
8247 | 10920 | 5.027460 | TCCTTAAGCACCTACCATTGTAGA | 58.973 | 41.667 | 5.55 | 0.00 | 46.18 | 2.59 |
8248 | 10921 | 5.128827 | TCTCCTTAAGCACCTACCATTGTAG | 59.871 | 44.000 | 0.00 | 0.00 | 43.46 | 2.74 |
8249 | 10922 | 5.027460 | TCTCCTTAAGCACCTACCATTGTA | 58.973 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
8250 | 10923 | 3.844211 | TCTCCTTAAGCACCTACCATTGT | 59.156 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
8251 | 10924 | 4.487714 | TCTCCTTAAGCACCTACCATTG | 57.512 | 45.455 | 0.00 | 0.00 | 0.00 | 2.82 |
8252 | 10925 | 4.687219 | GCATCTCCTTAAGCACCTACCATT | 60.687 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
8253 | 10926 | 3.181450 | GCATCTCCTTAAGCACCTACCAT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
8254 | 10927 | 2.170607 | GCATCTCCTTAAGCACCTACCA | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
8255 | 10928 | 2.436173 | AGCATCTCCTTAAGCACCTACC | 59.564 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
8256 | 10929 | 3.133003 | TGAGCATCTCCTTAAGCACCTAC | 59.867 | 47.826 | 0.00 | 0.00 | 34.92 | 3.18 |
8257 | 10930 | 3.374764 | TGAGCATCTCCTTAAGCACCTA | 58.625 | 45.455 | 0.00 | 0.00 | 34.92 | 3.08 |
8258 | 10931 | 2.170187 | CTGAGCATCTCCTTAAGCACCT | 59.830 | 50.000 | 0.00 | 0.00 | 34.92 | 4.00 |
8259 | 10932 | 2.169352 | TCTGAGCATCTCCTTAAGCACC | 59.831 | 50.000 | 0.00 | 0.00 | 34.92 | 5.01 |
8260 | 10933 | 3.533606 | TCTGAGCATCTCCTTAAGCAC | 57.466 | 47.619 | 0.00 | 0.00 | 34.92 | 4.40 |
8261 | 10934 | 4.558226 | TTTCTGAGCATCTCCTTAAGCA | 57.442 | 40.909 | 0.00 | 0.00 | 34.92 | 3.91 |
8262 | 10935 | 5.886960 | TTTTTCTGAGCATCTCCTTAAGC | 57.113 | 39.130 | 0.00 | 0.00 | 34.92 | 3.09 |
8263 | 10936 | 9.780413 | GTTTATTTTTCTGAGCATCTCCTTAAG | 57.220 | 33.333 | 0.00 | 0.00 | 34.92 | 1.85 |
8264 | 10937 | 8.739972 | GGTTTATTTTTCTGAGCATCTCCTTAA | 58.260 | 33.333 | 0.00 | 0.00 | 34.92 | 1.85 |
8265 | 10938 | 7.065803 | CGGTTTATTTTTCTGAGCATCTCCTTA | 59.934 | 37.037 | 0.00 | 0.00 | 34.92 | 2.69 |
8266 | 10939 | 6.127897 | CGGTTTATTTTTCTGAGCATCTCCTT | 60.128 | 38.462 | 0.00 | 0.00 | 34.92 | 3.36 |
8267 | 10940 | 5.355350 | CGGTTTATTTTTCTGAGCATCTCCT | 59.645 | 40.000 | 0.00 | 0.00 | 34.92 | 3.69 |
8268 | 10941 | 5.449177 | CCGGTTTATTTTTCTGAGCATCTCC | 60.449 | 44.000 | 0.00 | 0.00 | 34.92 | 3.71 |
8269 | 10942 | 5.573146 | CCGGTTTATTTTTCTGAGCATCTC | 58.427 | 41.667 | 0.00 | 0.00 | 34.92 | 2.75 |
8270 | 10943 | 4.142381 | GCCGGTTTATTTTTCTGAGCATCT | 60.142 | 41.667 | 1.90 | 0.00 | 34.92 | 2.90 |
8271 | 10944 | 4.105486 | GCCGGTTTATTTTTCTGAGCATC | 58.895 | 43.478 | 1.90 | 0.00 | 0.00 | 3.91 |
8272 | 10945 | 3.763897 | AGCCGGTTTATTTTTCTGAGCAT | 59.236 | 39.130 | 1.90 | 0.00 | 0.00 | 3.79 |
8273 | 10946 | 3.153919 | AGCCGGTTTATTTTTCTGAGCA | 58.846 | 40.909 | 1.90 | 0.00 | 0.00 | 4.26 |
8274 | 10947 | 3.850122 | AGCCGGTTTATTTTTCTGAGC | 57.150 | 42.857 | 1.90 | 0.00 | 0.00 | 4.26 |
8275 | 10948 | 5.983118 | ACAAAAGCCGGTTTATTTTTCTGAG | 59.017 | 36.000 | 3.14 | 0.00 | 0.00 | 3.35 |
8276 | 10949 | 5.751028 | CACAAAAGCCGGTTTATTTTTCTGA | 59.249 | 36.000 | 3.14 | 0.00 | 0.00 | 3.27 |
8277 | 10950 | 5.751028 | TCACAAAAGCCGGTTTATTTTTCTG | 59.249 | 36.000 | 3.14 | 4.71 | 0.00 | 3.02 |
8278 | 10951 | 5.908341 | TCACAAAAGCCGGTTTATTTTTCT | 58.092 | 33.333 | 3.14 | 0.00 | 0.00 | 2.52 |
8279 | 10952 | 6.591313 | TTCACAAAAGCCGGTTTATTTTTC | 57.409 | 33.333 | 3.14 | 0.00 | 0.00 | 2.29 |
8280 | 10953 | 5.007234 | GCTTCACAAAAGCCGGTTTATTTTT | 59.993 | 36.000 | 3.14 | 0.81 | 37.30 | 1.94 |
8281 | 10954 | 4.509970 | GCTTCACAAAAGCCGGTTTATTTT | 59.490 | 37.500 | 3.14 | 3.60 | 37.30 | 1.82 |
8282 | 10955 | 4.055360 | GCTTCACAAAAGCCGGTTTATTT | 58.945 | 39.130 | 3.14 | 0.00 | 37.30 | 1.40 |
8283 | 10956 | 3.068873 | TGCTTCACAAAAGCCGGTTTATT | 59.931 | 39.130 | 3.14 | 0.00 | 42.36 | 1.40 |
8284 | 10957 | 2.625790 | TGCTTCACAAAAGCCGGTTTAT | 59.374 | 40.909 | 3.14 | 0.00 | 42.36 | 1.40 |
8285 | 10958 | 2.025155 | TGCTTCACAAAAGCCGGTTTA | 58.975 | 42.857 | 3.14 | 0.00 | 42.36 | 2.01 |
8286 | 10959 | 0.820871 | TGCTTCACAAAAGCCGGTTT | 59.179 | 45.000 | 1.90 | 0.00 | 42.36 | 3.27 |
8287 | 10960 | 0.102300 | GTGCTTCACAAAAGCCGGTT | 59.898 | 50.000 | 1.90 | 0.00 | 42.36 | 4.44 |
8288 | 10961 | 1.733526 | GTGCTTCACAAAAGCCGGT | 59.266 | 52.632 | 1.90 | 0.00 | 42.36 | 5.28 |
8289 | 10962 | 1.007387 | GGTGCTTCACAAAAGCCGG | 60.007 | 57.895 | 0.00 | 0.00 | 42.36 | 6.13 |
8290 | 10963 | 1.370414 | CGGTGCTTCACAAAAGCCG | 60.370 | 57.895 | 7.26 | 1.43 | 42.36 | 5.52 |
8291 | 10964 | 1.007387 | CCGGTGCTTCACAAAAGCC | 60.007 | 57.895 | 7.26 | 0.00 | 42.36 | 4.35 |
8292 | 10965 | 0.594796 | CACCGGTGCTTCACAAAAGC | 60.595 | 55.000 | 24.02 | 2.87 | 43.29 | 3.51 |
8293 | 10966 | 3.549997 | CACCGGTGCTTCACAAAAG | 57.450 | 52.632 | 24.02 | 0.00 | 35.86 | 2.27 |
8304 | 10977 | 3.754323 | TCCTTAACAAATAAGCACCGGTG | 59.246 | 43.478 | 30.66 | 30.66 | 39.82 | 4.94 |
8305 | 10978 | 4.007659 | CTCCTTAACAAATAAGCACCGGT | 58.992 | 43.478 | 0.00 | 0.00 | 39.82 | 5.28 |
8306 | 10979 | 4.258543 | TCTCCTTAACAAATAAGCACCGG | 58.741 | 43.478 | 0.00 | 0.00 | 39.82 | 5.28 |
8307 | 10980 | 5.063564 | GTCTCTCCTTAACAAATAAGCACCG | 59.936 | 44.000 | 0.00 | 0.00 | 39.82 | 4.94 |
8308 | 10981 | 5.938125 | TGTCTCTCCTTAACAAATAAGCACC | 59.062 | 40.000 | 0.00 | 0.00 | 39.82 | 5.01 |
8309 | 10982 | 6.128254 | GGTGTCTCTCCTTAACAAATAAGCAC | 60.128 | 42.308 | 0.00 | 0.00 | 39.82 | 4.40 |
8310 | 10983 | 5.938125 | GGTGTCTCTCCTTAACAAATAAGCA | 59.062 | 40.000 | 0.00 | 0.00 | 39.82 | 3.91 |
8311 | 10984 | 6.174049 | AGGTGTCTCTCCTTAACAAATAAGC | 58.826 | 40.000 | 0.00 | 0.00 | 39.82 | 3.09 |
8312 | 10985 | 9.892130 | ATTAGGTGTCTCTCCTTAACAAATAAG | 57.108 | 33.333 | 0.00 | 0.00 | 40.67 | 1.73 |
8316 | 10989 | 9.720769 | CTTAATTAGGTGTCTCTCCTTAACAAA | 57.279 | 33.333 | 0.00 | 0.00 | 36.60 | 2.83 |
8317 | 10990 | 8.877195 | ACTTAATTAGGTGTCTCTCCTTAACAA | 58.123 | 33.333 | 0.00 | 0.00 | 36.60 | 2.83 |
8318 | 10991 | 8.431910 | ACTTAATTAGGTGTCTCTCCTTAACA | 57.568 | 34.615 | 0.00 | 0.00 | 36.60 | 2.41 |
8323 | 10996 | 9.577222 | GTAGATACTTAATTAGGTGTCTCTCCT | 57.423 | 37.037 | 24.00 | 8.63 | 35.82 | 3.69 |
8324 | 10997 | 8.795513 | GGTAGATACTTAATTAGGTGTCTCTCC | 58.204 | 40.741 | 24.00 | 22.00 | 35.82 | 3.71 |
8325 | 10998 | 8.795513 | GGGTAGATACTTAATTAGGTGTCTCTC | 58.204 | 40.741 | 24.00 | 18.66 | 35.82 | 3.20 |
8326 | 10999 | 8.512813 | AGGGTAGATACTTAATTAGGTGTCTCT | 58.487 | 37.037 | 24.00 | 15.39 | 35.82 | 3.10 |
8327 | 11000 | 8.578151 | CAGGGTAGATACTTAATTAGGTGTCTC | 58.422 | 40.741 | 24.00 | 16.97 | 35.82 | 3.36 |
8328 | 11001 | 8.066247 | ACAGGGTAGATACTTAATTAGGTGTCT | 58.934 | 37.037 | 23.85 | 23.85 | 37.48 | 3.41 |
8329 | 11002 | 8.247666 | ACAGGGTAGATACTTAATTAGGTGTC | 57.752 | 38.462 | 14.26 | 14.26 | 0.00 | 3.67 |
8330 | 11003 | 9.140874 | GTACAGGGTAGATACTTAATTAGGTGT | 57.859 | 37.037 | 10.31 | 3.59 | 0.00 | 4.16 |
8331 | 11004 | 9.139734 | TGTACAGGGTAGATACTTAATTAGGTG | 57.860 | 37.037 | 10.31 | 0.00 | 0.00 | 4.00 |
8332 | 11005 | 9.719433 | TTGTACAGGGTAGATACTTAATTAGGT | 57.281 | 33.333 | 5.49 | 5.49 | 0.00 | 3.08 |
8339 | 11012 | 9.204337 | TGCTTATTTGTACAGGGTAGATACTTA | 57.796 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
8340 | 11013 | 8.086143 | TGCTTATTTGTACAGGGTAGATACTT | 57.914 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
8341 | 11014 | 7.670605 | TGCTTATTTGTACAGGGTAGATACT | 57.329 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
8342 | 11015 | 7.328737 | CGATGCTTATTTGTACAGGGTAGATAC | 59.671 | 40.741 | 0.00 | 0.00 | 0.00 | 2.24 |
8343 | 11016 | 7.375834 | CGATGCTTATTTGTACAGGGTAGATA | 58.624 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
8344 | 11017 | 6.223852 | CGATGCTTATTTGTACAGGGTAGAT | 58.776 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
8345 | 11018 | 5.452776 | CCGATGCTTATTTGTACAGGGTAGA | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
8346 | 11019 | 4.750098 | CCGATGCTTATTTGTACAGGGTAG | 59.250 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
8347 | 11020 | 4.162698 | ACCGATGCTTATTTGTACAGGGTA | 59.837 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
8348 | 11021 | 3.054655 | ACCGATGCTTATTTGTACAGGGT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
8349 | 11022 | 3.312421 | CACCGATGCTTATTTGTACAGGG | 59.688 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
8350 | 11023 | 4.536364 | CACCGATGCTTATTTGTACAGG | 57.464 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
8364 | 11037 | 6.182039 | TCAGATTTTTCTTAAGCACCGATG | 57.818 | 37.500 | 0.00 | 0.00 | 0.00 | 3.84 |
8365 | 11038 | 7.396540 | AATCAGATTTTTCTTAAGCACCGAT | 57.603 | 32.000 | 0.00 | 0.00 | 0.00 | 4.18 |
8366 | 11039 | 6.817765 | AATCAGATTTTTCTTAAGCACCGA | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
8367 | 11040 | 9.573133 | AATAAATCAGATTTTTCTTAAGCACCG | 57.427 | 29.630 | 13.71 | 0.00 | 33.82 | 4.94 |
8382 | 11055 | 9.723601 | GGAGATGCTTAGAGAAATAAATCAGAT | 57.276 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
8383 | 11056 | 8.153550 | GGGAGATGCTTAGAGAAATAAATCAGA | 58.846 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
8384 | 11057 | 7.390162 | GGGGAGATGCTTAGAGAAATAAATCAG | 59.610 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
8385 | 11058 | 7.072961 | AGGGGAGATGCTTAGAGAAATAAATCA | 59.927 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
8386 | 11059 | 7.457561 | AGGGGAGATGCTTAGAGAAATAAATC | 58.542 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
8387 | 11060 | 7.399674 | AGGGGAGATGCTTAGAGAAATAAAT | 57.600 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
8388 | 11061 | 6.831664 | AGGGGAGATGCTTAGAGAAATAAA | 57.168 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
8389 | 11062 | 7.473511 | GCTTAGGGGAGATGCTTAGAGAAATAA | 60.474 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
8390 | 11063 | 6.014156 | GCTTAGGGGAGATGCTTAGAGAAATA | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
8391 | 11064 | 5.221823 | GCTTAGGGGAGATGCTTAGAGAAAT | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
8392 | 11065 | 4.101741 | GCTTAGGGGAGATGCTTAGAGAAA | 59.898 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
8393 | 11066 | 3.643792 | GCTTAGGGGAGATGCTTAGAGAA | 59.356 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
8394 | 11067 | 3.235200 | GCTTAGGGGAGATGCTTAGAGA | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
8395 | 11068 | 2.968574 | TGCTTAGGGGAGATGCTTAGAG | 59.031 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
8396 | 11069 | 2.700897 | GTGCTTAGGGGAGATGCTTAGA | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
8397 | 11070 | 2.224402 | GGTGCTTAGGGGAGATGCTTAG | 60.224 | 54.545 | 0.00 | 0.00 | 0.00 | 2.18 |
8398 | 11071 | 1.768870 | GGTGCTTAGGGGAGATGCTTA | 59.231 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
8399 | 11072 | 0.548510 | GGTGCTTAGGGGAGATGCTT | 59.451 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
8400 | 11073 | 0.327000 | AGGTGCTTAGGGGAGATGCT | 60.327 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
8401 | 11074 | 0.548510 | AAGGTGCTTAGGGGAGATGC | 59.451 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
8402 | 11075 | 1.748591 | GCAAGGTGCTTAGGGGAGATG | 60.749 | 57.143 | 0.00 | 0.00 | 40.96 | 2.90 |
8403 | 11076 | 0.548510 | GCAAGGTGCTTAGGGGAGAT | 59.451 | 55.000 | 0.00 | 0.00 | 40.96 | 2.75 |
8404 | 11077 | 0.840288 | TGCAAGGTGCTTAGGGGAGA | 60.840 | 55.000 | 1.43 | 0.00 | 45.31 | 3.71 |
8405 | 11078 | 0.257039 | ATGCAAGGTGCTTAGGGGAG | 59.743 | 55.000 | 0.00 | 0.00 | 45.31 | 4.30 |
8406 | 11079 | 0.704076 | AATGCAAGGTGCTTAGGGGA | 59.296 | 50.000 | 0.00 | 0.00 | 45.31 | 4.81 |
8407 | 11080 | 0.819582 | CAATGCAAGGTGCTTAGGGG | 59.180 | 55.000 | 0.00 | 0.00 | 45.31 | 4.79 |
8408 | 11081 | 1.549203 | ACAATGCAAGGTGCTTAGGG | 58.451 | 50.000 | 0.00 | 0.00 | 45.31 | 3.53 |
8409 | 11082 | 3.081061 | TGTACAATGCAAGGTGCTTAGG | 58.919 | 45.455 | 9.81 | 0.00 | 45.31 | 2.69 |
8410 | 11083 | 4.726416 | CTTGTACAATGCAAGGTGCTTAG | 58.274 | 43.478 | 9.13 | 4.87 | 45.31 | 2.18 |
8411 | 11084 | 4.764679 | CTTGTACAATGCAAGGTGCTTA | 57.235 | 40.909 | 9.13 | 0.00 | 45.31 | 3.09 |
8412 | 11085 | 3.648339 | CTTGTACAATGCAAGGTGCTT | 57.352 | 42.857 | 9.13 | 0.00 | 45.31 | 3.91 |
8418 | 11091 | 4.989279 | ATTAGGCCTTGTACAATGCAAG | 57.011 | 40.909 | 29.20 | 10.69 | 42.00 | 4.01 |
8419 | 11092 | 5.712446 | TGTTATTAGGCCTTGTACAATGCAA | 59.288 | 36.000 | 29.20 | 19.53 | 34.30 | 4.08 |
8420 | 11093 | 5.124776 | GTGTTATTAGGCCTTGTACAATGCA | 59.875 | 40.000 | 29.20 | 14.99 | 34.30 | 3.96 |
8421 | 11094 | 5.449999 | GGTGTTATTAGGCCTTGTACAATGC | 60.450 | 44.000 | 23.06 | 23.06 | 0.00 | 3.56 |
8422 | 11095 | 5.885912 | AGGTGTTATTAGGCCTTGTACAATG | 59.114 | 40.000 | 12.58 | 7.68 | 0.00 | 2.82 |
8423 | 11096 | 6.074698 | AGGTGTTATTAGGCCTTGTACAAT | 57.925 | 37.500 | 12.58 | 6.77 | 0.00 | 2.71 |
8424 | 11097 | 5.508280 | AGGTGTTATTAGGCCTTGTACAA | 57.492 | 39.130 | 12.58 | 8.28 | 0.00 | 2.41 |
8425 | 11098 | 6.623979 | TTAGGTGTTATTAGGCCTTGTACA | 57.376 | 37.500 | 12.58 | 8.13 | 32.90 | 2.90 |
8426 | 11099 | 7.333323 | TCTTTAGGTGTTATTAGGCCTTGTAC | 58.667 | 38.462 | 12.58 | 5.25 | 32.90 | 2.90 |
8427 | 11100 | 7.499200 | TCTTTAGGTGTTATTAGGCCTTGTA | 57.501 | 36.000 | 12.58 | 0.73 | 32.90 | 2.41 |
8428 | 11101 | 6.382919 | TCTTTAGGTGTTATTAGGCCTTGT | 57.617 | 37.500 | 12.58 | 1.94 | 32.90 | 3.16 |
8429 | 11102 | 6.095021 | GGTTCTTTAGGTGTTATTAGGCCTTG | 59.905 | 42.308 | 12.58 | 0.00 | 32.90 | 3.61 |
8430 | 11103 | 6.011893 | AGGTTCTTTAGGTGTTATTAGGCCTT | 60.012 | 38.462 | 12.58 | 0.00 | 32.90 | 4.35 |
8431 | 11104 | 5.491439 | AGGTTCTTTAGGTGTTATTAGGCCT | 59.509 | 40.000 | 11.78 | 11.78 | 35.28 | 5.19 |
8432 | 11105 | 5.752650 | AGGTTCTTTAGGTGTTATTAGGCC | 58.247 | 41.667 | 0.00 | 0.00 | 0.00 | 5.19 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.