Multiple sequence alignment - TraesCS7D01G324200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G324200 chr7D 100.000 3465 0 0 1 3465 414089124 414085660 0.000000e+00 6399.0
1 TraesCS7D01G324200 chr7B 93.885 2551 80 25 480 2980 428484822 428482298 0.000000e+00 3777.0
2 TraesCS7D01G324200 chr7B 90.435 345 11 7 3142 3465 428482219 428481876 5.310000e-118 435.0
3 TraesCS7D01G324200 chr7B 94.444 252 7 3 169 420 428485089 428484845 7.020000e-102 381.0
4 TraesCS7D01G324200 chr7B 88.966 145 11 2 1 141 428485302 428485159 1.280000e-39 174.0
5 TraesCS7D01G324200 chr7A 91.152 2543 103 47 1 2466 475964798 475962301 0.000000e+00 3338.0
6 TraesCS7D01G324200 chr7A 93.002 443 26 4 2436 2875 475962254 475961814 2.920000e-180 641.0
7 TraesCS7D01G324200 chr7A 86.667 300 17 13 3061 3349 475961459 475961172 9.340000e-81 311.0
8 TraesCS7D01G324200 chr7A 86.066 122 10 4 2887 3006 475961698 475961582 1.310000e-24 124.0
9 TraesCS7D01G324200 chr7A 89.773 88 8 1 2983 3070 561709824 561709738 1.020000e-20 111.0
10 TraesCS7D01G324200 chr2B 84.951 206 28 1 1859 2061 785271223 785271428 4.530000e-49 206.0
11 TraesCS7D01G324200 chr2B 82.326 215 26 7 1859 2061 785278580 785278794 3.550000e-40 176.0
12 TraesCS7D01G324200 chr2A 82.160 213 26 4 1861 2061 775272174 775271962 4.600000e-39 172.0
13 TraesCS7D01G324200 chr2A 81.991 211 26 4 1863 2061 775248826 775248616 5.950000e-38 169.0
14 TraesCS7D01G324200 chr2A 86.916 107 13 1 2984 3090 706284246 706284141 6.080000e-23 119.0
15 TraesCS7D01G324200 chr2D 80.465 215 27 5 1862 2061 649565375 649565589 2.150000e-32 150.0
16 TraesCS7D01G324200 chr5B 86.869 99 12 1 2983 3081 360464287 360464190 3.660000e-20 110.0
17 TraesCS7D01G324200 chr5B 85.714 98 11 3 2984 3080 517209070 517209165 2.200000e-17 100.0
18 TraesCS7D01G324200 chr5B 84.146 82 9 2 364 445 505709493 505709570 3.710000e-10 76.8
19 TraesCS7D01G324200 chr4D 76.190 231 35 15 1869 2089 95289859 95289639 1.700000e-18 104.0
20 TraesCS7D01G324200 chrUn 84.848 99 14 1 2983 3081 287694796 287694893 7.910000e-17 99.0
21 TraesCS7D01G324200 chrUn 84.848 99 14 1 2983 3081 287707000 287707097 7.910000e-17 99.0
22 TraesCS7D01G324200 chrUn 84.848 99 14 1 2983 3081 294703013 294703110 7.910000e-17 99.0
23 TraesCS7D01G324200 chr4B 75.758 231 36 15 1869 2089 134825135 134824915 7.910000e-17 99.0
24 TraesCS7D01G324200 chr4A 76.355 203 35 11 1869 2061 484672671 484672870 2.850000e-16 97.1
25 TraesCS7D01G324200 chr1B 84.694 98 14 1 2984 3081 325975525 325975621 2.850000e-16 97.1
26 TraesCS7D01G324200 chr3B 82.692 104 15 3 2982 3084 567258041 567257940 4.760000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G324200 chr7D 414085660 414089124 3464 True 6399.00 6399 100.00000 1 3465 1 chr7D.!!$R1 3464
1 TraesCS7D01G324200 chr7B 428481876 428485302 3426 True 1191.75 3777 91.93250 1 3465 4 chr7B.!!$R1 3464
2 TraesCS7D01G324200 chr7A 475961172 475964798 3626 True 1103.50 3338 89.22175 1 3349 4 chr7A.!!$R2 3348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 755 0.170339 GCAGATTAAACCACGCCACC 59.830 55.0 0.0 0.0 0.0 4.61 F
1980 2081 0.835941 GACTGGTGCTGGATGGAGAT 59.164 55.0 0.0 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2407 0.169009 GCCAGTAGCTTCGCAAAAGG 59.831 55.000 0.0 0.0 38.99 3.11 R
3216 3614 2.111756 CTTGTTGCGTCTTGAGTTTGC 58.888 47.619 0.0 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 83 3.117589 GCAGCCTGCACAGAAAATG 57.882 52.632 12.82 0.00 44.26 2.32
79 84 0.316204 GCAGCCTGCACAGAAAATGT 59.684 50.000 12.82 0.00 44.26 2.71
80 85 1.541147 GCAGCCTGCACAGAAAATGTA 59.459 47.619 12.82 0.00 44.26 2.29
90 95 4.021102 ACAGAAAATGTACTGTGGGGAG 57.979 45.455 0.00 0.00 44.18 4.30
103 108 1.028905 TGGGGAGCAAAACTGAAACG 58.971 50.000 0.00 0.00 0.00 3.60
104 109 0.313987 GGGGAGCAAAACTGAAACGG 59.686 55.000 0.00 0.00 0.00 4.44
164 187 5.047660 AGGGCGCAGTGTAAATTTTCAATTA 60.048 36.000 10.83 0.00 0.00 1.40
166 189 6.312672 GGGCGCAGTGTAAATTTTCAATTATT 59.687 34.615 10.83 0.00 0.00 1.40
167 190 7.172757 GGCGCAGTGTAAATTTTCAATTATTG 58.827 34.615 10.83 0.00 0.00 1.90
210 264 7.201556 GCGATGATATGTGTTCCATAACCATAG 60.202 40.741 0.00 0.00 39.43 2.23
362 426 3.350833 GCCAAGGTCTCATCTGTGAAAT 58.649 45.455 0.00 0.00 33.05 2.17
427 491 1.709115 ACAGATGGATGGATGGATGGG 59.291 52.381 0.00 0.00 0.00 4.00
459 523 2.170738 GCACTGCGTGGATTGCTAA 58.829 52.632 10.02 0.00 33.64 3.09
464 528 4.213270 GCACTGCGTGGATTGCTAATATTA 59.787 41.667 10.02 0.00 33.64 0.98
465 529 5.679906 CACTGCGTGGATTGCTAATATTAC 58.320 41.667 0.00 0.00 0.00 1.89
466 530 5.466728 CACTGCGTGGATTGCTAATATTACT 59.533 40.000 0.00 0.00 0.00 2.24
472 536 7.410513 GCGTGGATTGCTAATATTACTTACTCG 60.411 40.741 0.00 0.00 0.00 4.18
519 588 4.462508 TCTCTCTTGTCTGCACCTAATG 57.537 45.455 0.00 0.00 0.00 1.90
542 615 2.002586 CTATCCTGTGACCTTGTTGCG 58.997 52.381 0.00 0.00 0.00 4.85
566 639 6.481976 CGCCATTTGATTACAACAGGTATCTA 59.518 38.462 0.00 0.00 35.63 1.98
568 641 7.282224 GCCATTTGATTACAACAGGTATCTACA 59.718 37.037 0.00 0.00 35.63 2.74
674 755 0.170339 GCAGATTAAACCACGCCACC 59.830 55.000 0.00 0.00 0.00 4.61
830 922 6.150474 ACCAATACCAATTAAACGGTCTCTTG 59.850 38.462 2.60 6.18 36.69 3.02
1094 1192 1.555075 CTCACCAGGCAACCTAGCTAA 59.445 52.381 0.00 0.00 29.64 3.09
1129 1227 3.679389 TCTTTTGATTGCTCCTGTCCTC 58.321 45.455 0.00 0.00 0.00 3.71
1150 1248 5.417266 CCTCTACTGATATGCTGCTAGCTTA 59.583 44.000 17.23 2.30 42.97 3.09
1151 1249 6.404623 CCTCTACTGATATGCTGCTAGCTTAG 60.405 46.154 17.23 7.01 42.97 2.18
1197 1298 1.209019 ACTATGCAACCCTCTGAGCAG 59.791 52.381 0.00 0.00 40.71 4.24
1266 1367 2.298158 CTGTAGTAGCCCTGCCCACG 62.298 65.000 0.00 0.00 0.00 4.94
1330 1431 1.324736 GTGCATCGTCCTGTTCGATTC 59.675 52.381 0.00 0.00 43.98 2.52
1423 1524 2.429058 CAGGTGGACAGTGCTGCT 59.571 61.111 0.00 0.00 0.00 4.24
1774 1875 2.003548 GGCCACCTCCTCCTCCATT 61.004 63.158 0.00 0.00 0.00 3.16
1980 2081 0.835941 GACTGGTGCTGGATGGAGAT 59.164 55.000 0.00 0.00 0.00 2.75
2111 2212 3.959975 CCACCGCCACAACCAACG 61.960 66.667 0.00 0.00 0.00 4.10
2333 2442 3.430929 GCTACTGGCTAGCTATTGTGTGT 60.431 47.826 15.72 4.15 44.24 3.72
2346 2455 1.378531 TGTGTGTTTGCCTGTCAGTC 58.621 50.000 0.00 0.00 0.00 3.51
2447 2638 5.873164 GCCCGGATATTACGTATGAGAAAAT 59.127 40.000 0.73 0.00 0.00 1.82
2588 2782 5.069119 ACCACAAGAAATGAAGAAGGGAAAC 59.931 40.000 0.00 0.00 0.00 2.78
2614 2808 6.256757 CCTCTTGTTTCAGACGGATCTAAATC 59.743 42.308 0.00 0.00 32.25 2.17
2626 2820 6.668541 CGGATCTAAATCTGTGAATGTGTT 57.331 37.500 0.00 0.00 34.13 3.32
2627 2821 7.770801 CGGATCTAAATCTGTGAATGTGTTA 57.229 36.000 0.00 0.00 34.13 2.41
2683 2877 0.168128 GTCGTTGGCCATACAGTTGC 59.832 55.000 6.09 0.00 0.00 4.17
2700 2894 3.446873 AGTTGCCATTTTGTCAGTCAACA 59.553 39.130 0.00 0.00 35.95 3.33
2704 2898 3.555547 GCCATTTTGTCAGTCAACAAACC 59.444 43.478 1.92 0.00 45.98 3.27
2857 3059 0.394762 CTGGGTCATCATGTGGTGGG 60.395 60.000 0.00 0.00 0.00 4.61
2970 3284 1.064314 AGTAGGATCCACGAGAGCAGT 60.064 52.381 15.82 0.00 30.22 4.40
2980 3294 1.134965 ACGAGAGCAGTGCAGAATACC 60.135 52.381 19.20 0.00 0.00 2.73
2981 3295 1.134995 CGAGAGCAGTGCAGAATACCA 60.135 52.381 19.20 0.00 0.00 3.25
2982 3296 2.675032 CGAGAGCAGTGCAGAATACCAA 60.675 50.000 19.20 0.00 0.00 3.67
2996 3310 4.344390 AGAATACCAATACTTCCTCCGTCC 59.656 45.833 0.00 0.00 0.00 4.79
2999 3313 1.557832 CCAATACTTCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
3004 3318 5.703730 ATACTTCCTCCGTCCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
3006 3320 4.930696 ACTTCCTCCGTCCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
3007 3321 4.705023 ACTTCCTCCGTCCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
3008 3322 4.310022 TCCTCCGTCCCAAAATAAATGT 57.690 40.909 0.00 0.00 0.00 2.71
3009 3323 4.266714 TCCTCCGTCCCAAAATAAATGTC 58.733 43.478 0.00 0.00 0.00 3.06
3011 3325 4.335594 CCTCCGTCCCAAAATAAATGTCTC 59.664 45.833 0.00 0.00 0.00 3.36
3012 3326 4.912586 TCCGTCCCAAAATAAATGTCTCA 58.087 39.130 0.00 0.00 0.00 3.27
3013 3327 5.317808 TCCGTCCCAAAATAAATGTCTCAA 58.682 37.500 0.00 0.00 0.00 3.02
3017 3331 7.602265 CCGTCCCAAAATAAATGTCTCAATTTT 59.398 33.333 0.00 0.00 33.07 1.82
3101 3485 9.314321 AGAGTAACAAATAATCTGGTGTAATCG 57.686 33.333 0.00 0.00 37.54 3.34
3105 3492 7.539712 ACAAATAATCTGGTGTAATCGTCAG 57.460 36.000 0.00 0.00 0.00 3.51
3111 3498 1.552792 TGGTGTAATCGTCAGGCATGA 59.447 47.619 0.00 0.00 0.00 3.07
3114 3501 1.206849 TGTAATCGTCAGGCATGAGCA 59.793 47.619 0.00 0.00 44.61 4.26
3138 3536 4.660789 AACTGATACGTACCACCATACC 57.339 45.455 0.00 0.00 0.00 2.73
3139 3537 3.907221 ACTGATACGTACCACCATACCT 58.093 45.455 0.00 0.00 0.00 3.08
3216 3614 4.403432 AGTTTATGAGTGATGCATTTGGGG 59.597 41.667 0.00 0.00 0.00 4.96
3240 3638 1.070134 ACTCAAGACGCAACAAGCCTA 59.930 47.619 0.00 0.00 41.38 3.93
3244 3642 0.396811 AGACGCAACAAGCCTACCTT 59.603 50.000 0.00 0.00 41.38 3.50
3246 3644 0.107831 ACGCAACAAGCCTACCTTCA 59.892 50.000 0.00 0.00 41.38 3.02
3247 3645 1.271379 ACGCAACAAGCCTACCTTCAT 60.271 47.619 0.00 0.00 41.38 2.57
3370 3780 0.666274 TACTGCCGTGCGAAACTCTG 60.666 55.000 0.00 0.00 0.00 3.35
3444 3863 9.756461 CGTATGTATATTGTACTACTACTGCTG 57.244 37.037 0.00 0.00 0.00 4.41
3446 3865 7.818997 TGTATATTGTACTACTACTGCTGCT 57.181 36.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 75 2.749621 GCTCCCCACAGTACATTTTCTG 59.250 50.000 0.00 0.00 37.65 3.02
76 81 2.108250 AGTTTTGCTCCCCACAGTACAT 59.892 45.455 0.00 0.00 0.00 2.29
77 82 1.493022 AGTTTTGCTCCCCACAGTACA 59.507 47.619 0.00 0.00 0.00 2.90
78 83 1.880027 CAGTTTTGCTCCCCACAGTAC 59.120 52.381 0.00 0.00 0.00 2.73
79 84 1.771854 TCAGTTTTGCTCCCCACAGTA 59.228 47.619 0.00 0.00 0.00 2.74
80 85 0.550914 TCAGTTTTGCTCCCCACAGT 59.449 50.000 0.00 0.00 0.00 3.55
90 95 0.249031 AGCAGCCGTTTCAGTTTTGC 60.249 50.000 0.00 0.00 0.00 3.68
103 108 3.820595 GGAAAATTCCACAGCAGCC 57.179 52.632 7.32 0.00 46.76 4.85
223 277 2.830370 GAATCCCAGCAAGGCGGG 60.830 66.667 10.54 10.54 43.28 6.13
224 278 1.039233 AATGAATCCCAGCAAGGCGG 61.039 55.000 0.00 0.00 35.39 6.13
225 279 0.383231 GAATGAATCCCAGCAAGGCG 59.617 55.000 0.00 0.00 35.39 5.52
226 280 1.135721 GTGAATGAATCCCAGCAAGGC 59.864 52.381 0.00 0.00 35.39 4.35
227 281 1.753073 GGTGAATGAATCCCAGCAAGG 59.247 52.381 0.00 0.00 37.03 3.61
232 286 2.162208 CGTGTTGGTGAATGAATCCCAG 59.838 50.000 0.00 0.00 32.26 4.45
362 426 6.630203 TCTCCCTGCAAAGTAACCTTAATA 57.370 37.500 0.00 0.00 0.00 0.98
478 542 7.715686 AGAGAGAAACGTCCTCTAATTGTTTTT 59.284 33.333 17.15 0.00 40.78 1.94
519 588 3.873952 GCAACAAGGTCACAGGATAGATC 59.126 47.826 0.00 0.00 0.00 2.75
542 615 6.699575 AGATACCTGTTGTAATCAAATGGC 57.300 37.500 0.00 0.00 35.20 4.40
566 639 1.604604 AGTAAATGCCGCAAGTGTGT 58.395 45.000 0.00 0.00 0.00 3.72
568 641 7.979444 ATATAATAGTAAATGCCGCAAGTGT 57.021 32.000 0.00 0.00 0.00 3.55
608 689 5.984627 TGATCAGTTTCACAACAACATACG 58.015 37.500 0.00 0.00 35.05 3.06
609 690 7.417612 AGTTGATCAGTTTCACAACAACATAC 58.582 34.615 0.00 0.00 43.06 2.39
610 691 7.566760 AGTTGATCAGTTTCACAACAACATA 57.433 32.000 0.00 0.00 43.06 2.29
611 692 6.455360 AGTTGATCAGTTTCACAACAACAT 57.545 33.333 0.00 0.00 43.06 2.71
674 755 1.632018 TAGATTTGGGAGCCGGTGGG 61.632 60.000 1.90 0.00 0.00 4.61
845 937 4.343239 AGACACATGCATGATCAGTAGCTA 59.657 41.667 32.75 0.00 0.00 3.32
847 939 3.464907 AGACACATGCATGATCAGTAGC 58.535 45.455 32.75 13.25 0.00 3.58
1094 1192 7.992033 AGCAATCAAAAGAGTAATCAGCTAGAT 59.008 33.333 0.00 0.00 39.09 1.98
1177 1275 1.209019 CTGCTCAGAGGGTTGCATAGT 59.791 52.381 0.00 0.00 34.79 2.12
1197 1298 1.165270 GGTGTGTGTATGTGGGCTTC 58.835 55.000 0.00 0.00 0.00 3.86
1330 1431 6.537453 TTTAGTCTGATCTCAAGGAGAAGG 57.463 41.667 0.00 0.00 42.27 3.46
1366 1467 0.886490 ACGTGAGGCCAAGCTTCTTG 60.886 55.000 5.01 0.00 35.64 3.02
1774 1875 2.676822 AGCTTGGCCTCGTCGAGA 60.677 61.111 23.74 0.44 0.00 4.04
1841 1942 0.826672 ACCGTCTTGTCGACCTTCCT 60.827 55.000 14.12 0.00 39.56 3.36
1883 1984 0.242825 TTCGACGAGTCCATGGTCAC 59.757 55.000 12.58 3.19 36.50 3.67
1980 2081 1.229820 AGGTACCACCCCAGCATCA 60.230 57.895 15.94 0.00 39.75 3.07
2103 2204 1.376037 GAGGAGGAGCCGTTGGTTG 60.376 63.158 0.00 0.00 43.43 3.77
2104 2205 2.593956 GGAGGAGGAGCCGTTGGTT 61.594 63.158 0.00 0.00 43.43 3.67
2111 2212 2.907236 GCTGAAGGAGGAGGAGCC 59.093 66.667 0.00 0.00 0.00 4.70
2198 2305 1.477553 GAATCATGGCAGCAAGGGAA 58.522 50.000 0.00 0.00 0.00 3.97
2300 2407 0.169009 GCCAGTAGCTTCGCAAAAGG 59.831 55.000 0.00 0.00 38.99 3.11
2333 2442 2.253758 GCGCAGACTGACAGGCAAA 61.254 57.895 11.83 0.00 0.00 3.68
2359 2477 3.756434 GCAAACAATCAGTTAGGTAGGCA 59.244 43.478 0.00 0.00 40.26 4.75
2469 2660 7.902032 ACAACACACACGCTATACATATTTAC 58.098 34.615 0.00 0.00 0.00 2.01
2589 2783 3.601443 AGATCCGTCTGAAACAAGAGG 57.399 47.619 0.00 0.00 32.13 3.69
2614 2808 6.362283 GGAAAACGGAATTAACACATTCACAG 59.638 38.462 0.00 0.00 35.18 3.66
2620 2814 6.413783 AAAGGGAAAACGGAATTAACACAT 57.586 33.333 0.00 0.00 0.00 3.21
2626 2820 6.673839 AATGGAAAAGGGAAAACGGAATTA 57.326 33.333 0.00 0.00 0.00 1.40
2627 2821 5.560722 AATGGAAAAGGGAAAACGGAATT 57.439 34.783 0.00 0.00 0.00 2.17
2857 3059 5.896432 CACGCACATAACTAATTCAATCGAC 59.104 40.000 0.00 0.00 0.00 4.20
2970 3284 4.442893 CGGAGGAAGTATTGGTATTCTGCA 60.443 45.833 0.00 0.00 0.00 4.41
2980 3294 3.343941 TTTGGGACGGAGGAAGTATTG 57.656 47.619 0.00 0.00 0.00 1.90
2981 3295 4.586306 ATTTTGGGACGGAGGAAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
2982 3296 5.703730 TTATTTTGGGACGGAGGAAGTAT 57.296 39.130 0.00 0.00 0.00 2.12
3052 3366 8.833231 TCTCTTCGTCTCAAAATAAATGTCTT 57.167 30.769 0.00 0.00 0.00 3.01
3053 3367 8.091449 ACTCTCTTCGTCTCAAAATAAATGTCT 58.909 33.333 0.00 0.00 0.00 3.41
3056 3370 9.959775 GTTACTCTCTTCGTCTCAAAATAAATG 57.040 33.333 0.00 0.00 0.00 2.32
3057 3371 9.706691 TGTTACTCTCTTCGTCTCAAAATAAAT 57.293 29.630 0.00 0.00 0.00 1.40
3058 3372 9.537192 TTGTTACTCTCTTCGTCTCAAAATAAA 57.463 29.630 0.00 0.00 0.00 1.40
3059 3373 9.537192 TTTGTTACTCTCTTCGTCTCAAAATAA 57.463 29.630 0.00 0.00 0.00 1.40
3064 3448 9.355215 GATTATTTGTTACTCTCTTCGTCTCAA 57.645 33.333 0.00 0.00 0.00 3.02
3070 3454 7.545965 ACACCAGATTATTTGTTACTCTCTTCG 59.454 37.037 0.00 0.00 0.00 3.79
3075 3459 9.314321 CGATTACACCAGATTATTTGTTACTCT 57.686 33.333 0.00 0.00 0.00 3.24
3101 3485 3.273434 TCAGTTATTGCTCATGCCTGAC 58.727 45.455 0.00 0.00 38.71 3.51
3105 3492 3.809832 ACGTATCAGTTATTGCTCATGCC 59.190 43.478 0.00 0.00 38.71 4.40
3111 3498 4.160814 TGGTGGTACGTATCAGTTATTGCT 59.839 41.667 9.25 0.00 0.00 3.91
3114 3501 6.552350 AGGTATGGTGGTACGTATCAGTTATT 59.448 38.462 9.25 0.00 0.00 1.40
3158 3556 7.490962 TTATTGCAAGATATTCGGTCGATTT 57.509 32.000 4.94 0.00 0.00 2.17
3216 3614 2.111756 CTTGTTGCGTCTTGAGTTTGC 58.888 47.619 0.00 0.00 0.00 3.68
3422 3837 7.818997 AGCAGCAGTAGTAGTACAATATACA 57.181 36.000 10.33 0.00 0.00 2.29
3441 3860 2.667137 CGCCTATCTTGTAGTAGCAGC 58.333 52.381 0.00 0.00 0.00 5.25
3444 3863 2.667137 CAGCGCCTATCTTGTAGTAGC 58.333 52.381 2.29 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.