Multiple sequence alignment - TraesCS7D01G324100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G324100 chr7D 100.000 2648 0 0 1 2648 413727683 413730330 0.000000e+00 4891
1 TraesCS7D01G324100 chr7D 93.357 286 16 3 4 289 421327778 421328060 1.130000e-113 420
2 TraesCS7D01G324100 chr7A 92.052 1686 99 15 289 1956 475803638 475805306 0.000000e+00 2338
3 TraesCS7D01G324100 chr7A 88.485 330 33 3 2324 2648 475805398 475805727 6.870000e-106 394
4 TraesCS7D01G324100 chr7B 95.471 1126 37 8 640 1759 428162899 428164016 0.000000e+00 1784
5 TraesCS7D01G324100 chr7B 91.076 381 34 0 2256 2636 428165527 428165907 1.410000e-142 516
6 TraesCS7D01G324100 chr7B 94.017 234 10 4 1751 1983 428165309 428165539 4.190000e-93 351
7 TraesCS7D01G324100 chr7B 86.598 291 32 2 1976 2259 527368611 527368321 5.500000e-82 315
8 TraesCS7D01G324100 chr7B 85.209 311 36 5 1962 2263 655380282 655380591 7.120000e-81 311
9 TraesCS7D01G324100 chr7B 80.226 354 45 12 289 619 428160906 428161257 2.630000e-60 243
10 TraesCS7D01G324100 chr5B 94.444 288 13 2 4 289 8410128 8409842 8.700000e-120 440
11 TraesCS7D01G324100 chr5B 85.763 295 34 4 1976 2263 571657051 571656758 3.310000e-79 305
12 TraesCS7D01G324100 chr2D 93.772 289 15 3 4 290 619425510 619425797 5.240000e-117 431
13 TraesCS7D01G324100 chr6B 93.426 289 15 3 4 289 696327171 696326884 2.440000e-115 425
14 TraesCS7D01G324100 chr5A 93.007 286 19 1 4 289 53452726 53452442 1.470000e-112 416
15 TraesCS7D01G324100 chr5A 93.007 286 16 3 4 289 425435596 425435315 5.270000e-112 414
16 TraesCS7D01G324100 chr5A 92.683 287 19 2 4 290 53371675 53371391 1.900000e-111 412
17 TraesCS7D01G324100 chr3A 93.031 287 17 3 4 290 735198377 735198660 1.470000e-112 416
18 TraesCS7D01G324100 chr5D 92.683 287 18 2 4 290 499676829 499676546 6.820000e-111 411
19 TraesCS7D01G324100 chr5D 86.986 292 31 2 1976 2260 210677904 210678195 3.290000e-84 322
20 TraesCS7D01G324100 chr4D 86.824 296 30 4 1976 2263 466134940 466135234 3.290000e-84 322
21 TraesCS7D01G324100 chr4D 86.532 297 31 4 1976 2265 118151163 118151457 4.250000e-83 318
22 TraesCS7D01G324100 chr4B 85.526 304 36 4 1964 2259 621443570 621443873 7.120000e-81 311
23 TraesCS7D01G324100 chr3D 86.301 292 32 3 1976 2260 87136000 87135710 7.120000e-81 311
24 TraesCS7D01G324100 chr3B 85.294 306 31 7 1968 2263 684572784 684573085 1.190000e-78 303


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G324100 chr7D 413727683 413730330 2647 False 4891.0 4891 100.0000 1 2648 1 chr7D.!!$F1 2647
1 TraesCS7D01G324100 chr7A 475803638 475805727 2089 False 1366.0 2338 90.2685 289 2648 2 chr7A.!!$F1 2359
2 TraesCS7D01G324100 chr7B 428160906 428165907 5001 False 723.5 1784 90.1975 289 2636 4 chr7B.!!$F2 2347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.040204 ACCCAGCCTTCATTTCCTGG 59.96 55.0 0.0 0.0 43.47 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 5168 0.107017 ATCGCAATCAAGGTGGAGGG 60.107 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.864307 GGTGAGAGAATTTTTCAATCAAGTG 57.136 36.000 0.00 0.00 31.19 3.16
25 26 7.651808 GGTGAGAGAATTTTTCAATCAAGTGA 58.348 34.615 0.00 0.00 31.19 3.41
26 27 8.137437 GGTGAGAGAATTTTTCAATCAAGTGAA 58.863 33.333 0.00 0.00 35.72 3.18
27 28 9.178427 GTGAGAGAATTTTTCAATCAAGTGAAG 57.822 33.333 0.00 0.00 38.69 3.02
28 29 8.355169 TGAGAGAATTTTTCAATCAAGTGAAGG 58.645 33.333 0.00 0.00 38.69 3.46
29 30 8.469309 AGAGAATTTTTCAATCAAGTGAAGGA 57.531 30.769 0.00 0.00 38.69 3.36
30 31 9.086758 AGAGAATTTTTCAATCAAGTGAAGGAT 57.913 29.630 0.00 0.00 38.69 3.24
31 32 9.136952 GAGAATTTTTCAATCAAGTGAAGGATG 57.863 33.333 0.00 0.00 38.69 3.51
32 33 8.863086 AGAATTTTTCAATCAAGTGAAGGATGA 58.137 29.630 0.00 0.00 38.69 2.92
33 34 9.480053 GAATTTTTCAATCAAGTGAAGGATGAA 57.520 29.630 0.00 0.00 38.69 2.57
34 35 9.485206 AATTTTTCAATCAAGTGAAGGATGAAG 57.515 29.630 0.00 0.00 38.69 3.02
35 36 7.822161 TTTTCAATCAAGTGAAGGATGAAGA 57.178 32.000 0.00 0.00 38.69 2.87
36 37 8.413309 TTTTCAATCAAGTGAAGGATGAAGAT 57.587 30.769 0.00 0.00 38.69 2.40
37 38 6.997239 TCAATCAAGTGAAGGATGAAGATG 57.003 37.500 0.00 0.00 0.00 2.90
38 39 6.479006 TCAATCAAGTGAAGGATGAAGATGT 58.521 36.000 0.00 0.00 0.00 3.06
39 40 6.596888 TCAATCAAGTGAAGGATGAAGATGTC 59.403 38.462 0.00 0.00 0.00 3.06
40 41 5.488262 TCAAGTGAAGGATGAAGATGTCA 57.512 39.130 0.00 0.00 41.67 3.58
52 53 6.939132 ATGAAGATGTCATCAATCTGTTCC 57.061 37.500 15.20 0.00 44.01 3.62
53 54 5.807909 TGAAGATGTCATCAATCTGTTCCA 58.192 37.500 15.20 0.00 0.00 3.53
54 55 6.240145 TGAAGATGTCATCAATCTGTTCCAA 58.760 36.000 15.20 0.00 0.00 3.53
55 56 6.716173 TGAAGATGTCATCAATCTGTTCCAAA 59.284 34.615 15.20 0.00 0.00 3.28
56 57 7.231115 TGAAGATGTCATCAATCTGTTCCAAAA 59.769 33.333 15.20 0.00 0.00 2.44
57 58 7.528996 AGATGTCATCAATCTGTTCCAAAAA 57.471 32.000 15.20 0.00 0.00 1.94
58 59 7.600065 AGATGTCATCAATCTGTTCCAAAAAG 58.400 34.615 15.20 0.00 0.00 2.27
59 60 6.088016 TGTCATCAATCTGTTCCAAAAAGG 57.912 37.500 0.00 0.00 39.47 3.11
60 61 4.925646 GTCATCAATCTGTTCCAAAAAGGC 59.074 41.667 0.00 0.00 37.29 4.35
61 62 3.641437 TCAATCTGTTCCAAAAAGGCG 57.359 42.857 0.00 0.00 37.29 5.52
62 63 3.218453 TCAATCTGTTCCAAAAAGGCGA 58.782 40.909 0.00 0.00 37.29 5.54
63 64 3.004315 TCAATCTGTTCCAAAAAGGCGAC 59.996 43.478 0.00 0.00 37.29 5.19
64 65 1.314730 TCTGTTCCAAAAAGGCGACC 58.685 50.000 0.00 0.00 37.29 4.79
65 66 0.040425 CTGTTCCAAAAAGGCGACCG 60.040 55.000 0.00 0.00 37.29 4.79
66 67 1.371267 GTTCCAAAAAGGCGACCGC 60.371 57.895 5.75 5.75 37.29 5.68
76 77 4.959446 GCGACCGCCGAGTTATAT 57.041 55.556 2.55 0.00 41.76 0.86
77 78 3.190337 GCGACCGCCGAGTTATATT 57.810 52.632 2.55 0.00 41.76 1.28
78 79 0.782384 GCGACCGCCGAGTTATATTG 59.218 55.000 2.55 0.00 41.76 1.90
79 80 1.866880 GCGACCGCCGAGTTATATTGT 60.867 52.381 2.55 0.00 41.76 2.71
80 81 2.605338 GCGACCGCCGAGTTATATTGTA 60.605 50.000 2.55 0.00 41.76 2.41
81 82 3.631144 CGACCGCCGAGTTATATTGTAA 58.369 45.455 0.00 0.00 41.76 2.41
82 83 3.667261 CGACCGCCGAGTTATATTGTAAG 59.333 47.826 0.00 0.00 41.76 2.34
83 84 4.555313 CGACCGCCGAGTTATATTGTAAGA 60.555 45.833 0.00 0.00 41.76 2.10
84 85 5.266733 ACCGCCGAGTTATATTGTAAGAA 57.733 39.130 0.00 0.00 0.00 2.52
85 86 5.287226 ACCGCCGAGTTATATTGTAAGAAG 58.713 41.667 0.00 0.00 0.00 2.85
86 87 5.163478 ACCGCCGAGTTATATTGTAAGAAGT 60.163 40.000 0.00 0.00 0.00 3.01
87 88 6.039717 ACCGCCGAGTTATATTGTAAGAAGTA 59.960 38.462 0.00 0.00 0.00 2.24
88 89 7.088905 CCGCCGAGTTATATTGTAAGAAGTAT 58.911 38.462 0.00 0.00 0.00 2.12
89 90 8.239314 CCGCCGAGTTATATTGTAAGAAGTATA 58.761 37.037 0.00 0.00 0.00 1.47
90 91 9.784680 CGCCGAGTTATATTGTAAGAAGTATAT 57.215 33.333 0.00 0.00 0.00 0.86
136 137 9.692749 AGGTACTTATGTATTCATGTCGTTATG 57.307 33.333 0.00 0.00 27.25 1.90
137 138 8.922676 GGTACTTATGTATTCATGTCGTTATGG 58.077 37.037 0.00 0.00 35.70 2.74
138 139 9.472361 GTACTTATGTATTCATGTCGTTATGGT 57.528 33.333 0.00 0.00 35.70 3.55
139 140 8.589335 ACTTATGTATTCATGTCGTTATGGTC 57.411 34.615 0.00 0.00 35.70 4.02
140 141 8.421784 ACTTATGTATTCATGTCGTTATGGTCT 58.578 33.333 0.00 0.00 35.70 3.85
141 142 8.587952 TTATGTATTCATGTCGTTATGGTCTG 57.412 34.615 0.00 0.00 35.70 3.51
142 143 6.215495 TGTATTCATGTCGTTATGGTCTGA 57.785 37.500 0.00 0.00 0.00 3.27
143 144 6.816136 TGTATTCATGTCGTTATGGTCTGAT 58.184 36.000 0.00 0.00 0.00 2.90
144 145 7.947282 TGTATTCATGTCGTTATGGTCTGATA 58.053 34.615 0.00 0.00 0.00 2.15
145 146 7.865889 TGTATTCATGTCGTTATGGTCTGATAC 59.134 37.037 0.00 0.00 0.00 2.24
146 147 5.845391 TCATGTCGTTATGGTCTGATACA 57.155 39.130 0.00 0.00 0.00 2.29
147 148 6.405278 TCATGTCGTTATGGTCTGATACAT 57.595 37.500 0.00 3.81 0.00 2.29
148 149 6.816136 TCATGTCGTTATGGTCTGATACATT 58.184 36.000 3.67 0.00 0.00 2.71
149 150 6.701400 TCATGTCGTTATGGTCTGATACATTG 59.299 38.462 3.67 0.00 0.00 2.82
150 151 6.215495 TGTCGTTATGGTCTGATACATTGA 57.785 37.500 3.67 0.00 0.00 2.57
151 152 6.635755 TGTCGTTATGGTCTGATACATTGAA 58.364 36.000 3.67 0.00 0.00 2.69
152 153 7.100409 TGTCGTTATGGTCTGATACATTGAAA 58.900 34.615 3.67 0.00 0.00 2.69
153 154 7.768582 TGTCGTTATGGTCTGATACATTGAAAT 59.231 33.333 3.67 0.00 0.00 2.17
154 155 9.256477 GTCGTTATGGTCTGATACATTGAAATA 57.744 33.333 3.67 0.00 0.00 1.40
155 156 9.996554 TCGTTATGGTCTGATACATTGAAATAT 57.003 29.630 3.67 0.00 0.00 1.28
159 160 8.701908 ATGGTCTGATACATTGAAATATTGCT 57.298 30.769 0.00 0.00 0.00 3.91
160 161 9.797642 ATGGTCTGATACATTGAAATATTGCTA 57.202 29.630 0.00 0.00 0.00 3.49
161 162 9.797642 TGGTCTGATACATTGAAATATTGCTAT 57.202 29.630 0.00 0.00 0.00 2.97
165 166 9.350357 CTGATACATTGAAATATTGCTATTGCC 57.650 33.333 0.00 0.00 38.71 4.52
166 167 9.081204 TGATACATTGAAATATTGCTATTGCCT 57.919 29.630 0.00 0.00 38.71 4.75
167 168 9.918630 GATACATTGAAATATTGCTATTGCCTT 57.081 29.630 0.00 0.00 38.71 4.35
178 179 7.645058 ATTGCTATTGCCTTTATGTTAGTGT 57.355 32.000 0.00 0.00 38.71 3.55
179 180 7.461182 TTGCTATTGCCTTTATGTTAGTGTT 57.539 32.000 0.00 0.00 38.71 3.32
180 181 6.851609 TGCTATTGCCTTTATGTTAGTGTTG 58.148 36.000 0.00 0.00 38.71 3.33
181 182 6.432783 TGCTATTGCCTTTATGTTAGTGTTGT 59.567 34.615 0.00 0.00 38.71 3.32
182 183 7.040062 TGCTATTGCCTTTATGTTAGTGTTGTT 60.040 33.333 0.00 0.00 38.71 2.83
183 184 7.812669 GCTATTGCCTTTATGTTAGTGTTGTTT 59.187 33.333 0.00 0.00 0.00 2.83
184 185 9.691362 CTATTGCCTTTATGTTAGTGTTGTTTT 57.309 29.630 0.00 0.00 0.00 2.43
185 186 7.763172 TTGCCTTTATGTTAGTGTTGTTTTG 57.237 32.000 0.00 0.00 0.00 2.44
186 187 6.868622 TGCCTTTATGTTAGTGTTGTTTTGT 58.131 32.000 0.00 0.00 0.00 2.83
187 188 7.324178 TGCCTTTATGTTAGTGTTGTTTTGTT 58.676 30.769 0.00 0.00 0.00 2.83
188 189 7.489757 TGCCTTTATGTTAGTGTTGTTTTGTTC 59.510 33.333 0.00 0.00 0.00 3.18
189 190 7.489757 GCCTTTATGTTAGTGTTGTTTTGTTCA 59.510 33.333 0.00 0.00 0.00 3.18
190 191 9.528018 CCTTTATGTTAGTGTTGTTTTGTTCAT 57.472 29.630 0.00 0.00 0.00 2.57
208 209 9.838975 TTTGTTCATATATTTGCTACTGTTGTG 57.161 29.630 0.00 0.00 0.00 3.33
209 210 8.560355 TGTTCATATATTTGCTACTGTTGTGT 57.440 30.769 0.00 0.00 0.00 3.72
210 211 9.008965 TGTTCATATATTTGCTACTGTTGTGTT 57.991 29.630 0.00 0.00 0.00 3.32
211 212 9.277565 GTTCATATATTTGCTACTGTTGTGTTG 57.722 33.333 0.00 0.00 0.00 3.33
212 213 8.560355 TCATATATTTGCTACTGTTGTGTTGT 57.440 30.769 0.00 0.00 0.00 3.32
213 214 9.008965 TCATATATTTGCTACTGTTGTGTTGTT 57.991 29.630 0.00 0.00 0.00 2.83
214 215 9.624697 CATATATTTGCTACTGTTGTGTTGTTT 57.375 29.630 0.00 0.00 0.00 2.83
215 216 7.928908 ATATTTGCTACTGTTGTGTTGTTTG 57.071 32.000 0.00 0.00 0.00 2.93
216 217 3.773860 TGCTACTGTTGTGTTGTTTGG 57.226 42.857 0.00 0.00 0.00 3.28
217 218 3.085533 TGCTACTGTTGTGTTGTTTGGT 58.914 40.909 0.00 0.00 0.00 3.67
218 219 3.127895 TGCTACTGTTGTGTTGTTTGGTC 59.872 43.478 0.00 0.00 0.00 4.02
219 220 3.488553 GCTACTGTTGTGTTGTTTGGTCC 60.489 47.826 0.00 0.00 0.00 4.46
220 221 2.520069 ACTGTTGTGTTGTTTGGTCCA 58.480 42.857 0.00 0.00 0.00 4.02
221 222 3.096092 ACTGTTGTGTTGTTTGGTCCAT 58.904 40.909 0.00 0.00 0.00 3.41
222 223 4.274147 ACTGTTGTGTTGTTTGGTCCATA 58.726 39.130 0.00 0.00 0.00 2.74
223 224 4.892934 ACTGTTGTGTTGTTTGGTCCATAT 59.107 37.500 0.00 0.00 0.00 1.78
224 225 5.193663 TGTTGTGTTGTTTGGTCCATATG 57.806 39.130 0.00 0.00 0.00 1.78
225 226 3.932545 TGTGTTGTTTGGTCCATATGC 57.067 42.857 0.00 0.00 0.00 3.14
226 227 2.560542 TGTGTTGTTTGGTCCATATGCC 59.439 45.455 0.00 0.00 0.00 4.40
227 228 2.825532 GTGTTGTTTGGTCCATATGCCT 59.174 45.455 0.00 0.00 0.00 4.75
228 229 3.088532 TGTTGTTTGGTCCATATGCCTC 58.911 45.455 0.00 0.00 0.00 4.70
229 230 3.088532 GTTGTTTGGTCCATATGCCTCA 58.911 45.455 0.00 0.00 0.00 3.86
230 231 3.668141 TGTTTGGTCCATATGCCTCAT 57.332 42.857 0.00 0.00 0.00 2.90
231 232 3.979911 TGTTTGGTCCATATGCCTCATT 58.020 40.909 0.00 0.00 0.00 2.57
232 233 4.352009 TGTTTGGTCCATATGCCTCATTT 58.648 39.130 0.00 0.00 0.00 2.32
233 234 5.514169 TGTTTGGTCCATATGCCTCATTTA 58.486 37.500 0.00 0.00 0.00 1.40
234 235 5.593909 TGTTTGGTCCATATGCCTCATTTAG 59.406 40.000 0.00 0.00 0.00 1.85
235 236 5.645056 TTGGTCCATATGCCTCATTTAGA 57.355 39.130 0.00 0.00 0.00 2.10
236 237 5.233083 TGGTCCATATGCCTCATTTAGAG 57.767 43.478 0.00 0.00 44.31 2.43
237 238 4.006319 GGTCCATATGCCTCATTTAGAGC 58.994 47.826 0.00 0.00 43.31 4.09
238 239 4.006319 GTCCATATGCCTCATTTAGAGCC 58.994 47.826 0.00 0.00 43.31 4.70
239 240 3.652387 TCCATATGCCTCATTTAGAGCCA 59.348 43.478 0.00 0.00 43.31 4.75
240 241 4.104579 TCCATATGCCTCATTTAGAGCCAA 59.895 41.667 0.00 0.00 43.31 4.52
241 242 4.828939 CCATATGCCTCATTTAGAGCCAAA 59.171 41.667 0.00 0.00 43.31 3.28
242 243 5.302568 CCATATGCCTCATTTAGAGCCAAAA 59.697 40.000 0.00 0.00 43.31 2.44
243 244 6.014840 CCATATGCCTCATTTAGAGCCAAAAT 60.015 38.462 0.00 0.00 43.31 1.82
244 245 5.945144 ATGCCTCATTTAGAGCCAAAATT 57.055 34.783 0.00 0.00 43.31 1.82
245 246 5.743636 TGCCTCATTTAGAGCCAAAATTT 57.256 34.783 0.00 0.00 43.31 1.82
246 247 6.112927 TGCCTCATTTAGAGCCAAAATTTT 57.887 33.333 0.00 0.00 43.31 1.82
247 248 6.532826 TGCCTCATTTAGAGCCAAAATTTTT 58.467 32.000 0.00 0.00 43.31 1.94
266 267 3.756082 TTTTGGATGAATACCCAGCCT 57.244 42.857 0.00 0.00 42.74 4.58
267 268 3.756082 TTTGGATGAATACCCAGCCTT 57.244 42.857 0.00 0.00 42.74 4.35
268 269 3.297134 TTGGATGAATACCCAGCCTTC 57.703 47.619 0.00 0.00 42.74 3.46
269 270 2.204463 TGGATGAATACCCAGCCTTCA 58.796 47.619 0.00 0.00 42.74 3.02
270 271 2.785269 TGGATGAATACCCAGCCTTCAT 59.215 45.455 0.00 0.00 42.74 2.57
271 272 3.205056 TGGATGAATACCCAGCCTTCATT 59.795 43.478 0.00 0.00 42.74 2.57
272 273 4.218312 GGATGAATACCCAGCCTTCATTT 58.782 43.478 0.00 0.00 39.16 2.32
273 274 4.279420 GGATGAATACCCAGCCTTCATTTC 59.721 45.833 0.00 0.00 39.16 2.17
274 275 3.631250 TGAATACCCAGCCTTCATTTCC 58.369 45.455 0.00 0.00 0.00 3.13
275 276 3.269381 TGAATACCCAGCCTTCATTTCCT 59.731 43.478 0.00 0.00 0.00 3.36
276 277 2.806945 TACCCAGCCTTCATTTCCTG 57.193 50.000 0.00 0.00 0.00 3.86
277 278 0.040204 ACCCAGCCTTCATTTCCTGG 59.960 55.000 0.00 0.00 43.47 4.45
278 279 1.325476 CCCAGCCTTCATTTCCTGGC 61.325 60.000 0.00 0.00 42.71 4.85
280 281 2.491621 GCCTTCATTTCCTGGCGC 59.508 61.111 0.00 0.00 35.79 6.53
281 282 3.068729 GCCTTCATTTCCTGGCGCC 62.069 63.158 22.73 22.73 35.79 6.53
282 283 2.764314 CCTTCATTTCCTGGCGCCG 61.764 63.158 23.90 16.52 0.00 6.46
283 284 3.401243 CTTCATTTCCTGGCGCCGC 62.401 63.158 23.90 0.00 0.00 6.53
349 350 2.885861 GTCGATGCCGGTGACTCT 59.114 61.111 1.90 0.00 36.24 3.24
350 351 1.226717 GTCGATGCCGGTGACTCTC 60.227 63.158 1.90 0.00 36.24 3.20
358 359 0.176680 CCGGTGACTCTCCAAGATGG 59.823 60.000 0.00 0.00 39.43 3.51
453 457 1.523758 CAAGGGAAGTCCGGTTGAAG 58.476 55.000 0.00 0.00 41.52 3.02
466 470 2.599848 CGGTTGAAGTTGTTGCTCTTCG 60.600 50.000 0.00 0.00 41.77 3.79
497 501 0.802607 CTTGGTAGAGACGCGGCTTC 60.803 60.000 19.64 9.96 0.00 3.86
498 502 1.529152 TTGGTAGAGACGCGGCTTCA 61.529 55.000 19.64 10.22 0.00 3.02
501 505 1.066605 GGTAGAGACGCGGCTTCAATA 59.933 52.381 19.64 4.26 0.00 1.90
531 555 2.017782 TGTTTGTAATGTGTGCGGTGT 58.982 42.857 0.00 0.00 0.00 4.16
572 597 2.228582 GGTGTGATATTTGCACTGCACA 59.771 45.455 2.26 0.00 38.71 4.57
574 599 4.096231 GGTGTGATATTTGCACTGCACATA 59.904 41.667 11.40 11.40 38.71 2.29
601 627 1.646189 CAGCGAGAGGTAGCCTTTTC 58.354 55.000 0.00 0.00 41.81 2.29
662 2316 1.199327 CGTCTTTGGCGTACTCTCTCA 59.801 52.381 0.00 0.00 0.00 3.27
663 2317 2.351447 CGTCTTTGGCGTACTCTCTCAA 60.351 50.000 0.00 0.00 0.00 3.02
695 2351 0.597637 AAAGAGCACACGTCCACTCG 60.598 55.000 0.00 0.00 34.31 4.18
820 2478 0.168348 CACACGTACACTCCTCTCCG 59.832 60.000 0.00 0.00 0.00 4.63
840 2498 3.124921 AAAAGTGGCGATCGGCGG 61.125 61.111 32.63 0.00 44.92 6.13
889 2547 1.475045 CATGTCTGTCTCGATCTGCG 58.525 55.000 0.00 0.00 42.69 5.18
978 2637 4.467084 GATCGAGTTGGCCGGCCA 62.467 66.667 44.23 44.23 45.63 5.36
1062 2721 2.125912 CGGTGTCTCTTCTGCGGG 60.126 66.667 0.00 0.00 0.00 6.13
1068 2727 2.046507 CTCTTCTGCGGGCTGCTT 60.047 61.111 20.66 0.00 46.63 3.91
1168 2827 1.379916 CACCTCATCCAAGCCACCA 59.620 57.895 0.00 0.00 0.00 4.17
1194 2853 4.736896 GCCGACCTCGCCGACTTT 62.737 66.667 0.00 0.00 38.18 2.66
1560 3219 0.617413 AGGTTGACTGCCCTCTCATG 59.383 55.000 0.00 0.00 0.00 3.07
1930 4900 4.301072 TTTGATCTGTTCCCTCCGAATT 57.699 40.909 0.00 0.00 31.67 2.17
2009 4979 6.986424 GTGTATAAGTCACCTTGCAAAAAC 57.014 37.500 0.00 0.00 31.89 2.43
2010 4980 5.918576 GTGTATAAGTCACCTTGCAAAAACC 59.081 40.000 0.00 0.00 31.89 3.27
2011 4981 5.594725 TGTATAAGTCACCTTGCAAAAACCA 59.405 36.000 0.00 0.00 31.89 3.67
2012 4982 3.971245 AAGTCACCTTGCAAAAACCAA 57.029 38.095 0.00 0.00 0.00 3.67
2013 4983 3.971245 AGTCACCTTGCAAAAACCAAA 57.029 38.095 0.00 0.00 0.00 3.28
2014 4984 4.486125 AGTCACCTTGCAAAAACCAAAT 57.514 36.364 0.00 0.00 0.00 2.32
2015 4985 5.606348 AGTCACCTTGCAAAAACCAAATA 57.394 34.783 0.00 0.00 0.00 1.40
2016 4986 5.983540 AGTCACCTTGCAAAAACCAAATAA 58.016 33.333 0.00 0.00 0.00 1.40
2017 4987 6.591001 AGTCACCTTGCAAAAACCAAATAAT 58.409 32.000 0.00 0.00 0.00 1.28
2018 4988 6.705825 AGTCACCTTGCAAAAACCAAATAATC 59.294 34.615 0.00 0.00 0.00 1.75
2019 4989 5.994668 TCACCTTGCAAAAACCAAATAATCC 59.005 36.000 0.00 0.00 0.00 3.01
2020 4990 5.997129 CACCTTGCAAAAACCAAATAATCCT 59.003 36.000 0.00 0.00 0.00 3.24
2021 4991 7.015682 TCACCTTGCAAAAACCAAATAATCCTA 59.984 33.333 0.00 0.00 0.00 2.94
2022 4992 7.659390 CACCTTGCAAAAACCAAATAATCCTAA 59.341 33.333 0.00 0.00 0.00 2.69
2023 4993 8.214364 ACCTTGCAAAAACCAAATAATCCTAAA 58.786 29.630 0.00 0.00 0.00 1.85
2024 4994 9.061435 CCTTGCAAAAACCAAATAATCCTAAAA 57.939 29.630 0.00 0.00 0.00 1.52
2039 5009 7.730364 AATCCTAAAATACTTAGATGCGGTG 57.270 36.000 0.00 0.00 0.00 4.94
2040 5010 5.054477 TCCTAAAATACTTAGATGCGGTGC 58.946 41.667 0.00 0.00 0.00 5.01
2041 5011 4.814234 CCTAAAATACTTAGATGCGGTGCA 59.186 41.667 0.00 0.00 44.86 4.57
2055 5025 5.229921 TGCGGTGCATTAACTTTTATCTC 57.770 39.130 0.00 0.00 31.71 2.75
2056 5026 4.201773 TGCGGTGCATTAACTTTTATCTCG 60.202 41.667 0.00 0.00 31.71 4.04
2057 5027 4.201783 GCGGTGCATTAACTTTTATCTCGT 60.202 41.667 0.00 0.00 0.00 4.18
2058 5028 5.672819 GCGGTGCATTAACTTTTATCTCGTT 60.673 40.000 0.00 0.00 0.00 3.85
2059 5029 6.311723 CGGTGCATTAACTTTTATCTCGTTT 58.688 36.000 0.00 0.00 0.00 3.60
2060 5030 6.464834 CGGTGCATTAACTTTTATCTCGTTTC 59.535 38.462 0.00 0.00 0.00 2.78
2061 5031 7.527457 GGTGCATTAACTTTTATCTCGTTTCT 58.473 34.615 0.00 0.00 0.00 2.52
2062 5032 8.021396 GGTGCATTAACTTTTATCTCGTTTCTT 58.979 33.333 0.00 0.00 0.00 2.52
2063 5033 8.840867 GTGCATTAACTTTTATCTCGTTTCTTG 58.159 33.333 0.00 0.00 0.00 3.02
2064 5034 8.564574 TGCATTAACTTTTATCTCGTTTCTTGT 58.435 29.630 0.00 0.00 0.00 3.16
2065 5035 9.394477 GCATTAACTTTTATCTCGTTTCTTGTT 57.606 29.630 0.00 0.00 0.00 2.83
2070 5040 9.503427 AACTTTTATCTCGTTTCTTGTTTCTTG 57.497 29.630 0.00 0.00 0.00 3.02
2071 5041 8.889717 ACTTTTATCTCGTTTCTTGTTTCTTGA 58.110 29.630 0.00 0.00 0.00 3.02
2072 5042 9.159470 CTTTTATCTCGTTTCTTGTTTCTTGAC 57.841 33.333 0.00 0.00 0.00 3.18
2073 5043 7.780008 TTATCTCGTTTCTTGTTTCTTGACA 57.220 32.000 0.00 0.00 0.00 3.58
2074 5044 6.867662 ATCTCGTTTCTTGTTTCTTGACAT 57.132 33.333 0.00 0.00 0.00 3.06
2075 5045 7.962964 ATCTCGTTTCTTGTTTCTTGACATA 57.037 32.000 0.00 0.00 0.00 2.29
2076 5046 7.962964 TCTCGTTTCTTGTTTCTTGACATAT 57.037 32.000 0.00 0.00 0.00 1.78
2077 5047 8.018677 TCTCGTTTCTTGTTTCTTGACATATC 57.981 34.615 0.00 0.00 0.00 1.63
2078 5048 7.655732 TCTCGTTTCTTGTTTCTTGACATATCA 59.344 33.333 0.00 0.00 0.00 2.15
2079 5049 8.148807 TCGTTTCTTGTTTCTTGACATATCAA 57.851 30.769 0.00 0.00 42.73 2.57
2080 5050 8.067784 TCGTTTCTTGTTTCTTGACATATCAAC 58.932 33.333 0.00 0.00 40.01 3.18
2081 5051 7.323656 CGTTTCTTGTTTCTTGACATATCAACC 59.676 37.037 0.00 0.00 40.01 3.77
2082 5052 7.815840 TTCTTGTTTCTTGACATATCAACCA 57.184 32.000 0.00 0.00 40.01 3.67
2083 5053 7.815840 TCTTGTTTCTTGACATATCAACCAA 57.184 32.000 0.00 0.00 40.01 3.67
2084 5054 8.408043 TCTTGTTTCTTGACATATCAACCAAT 57.592 30.769 0.00 0.00 40.01 3.16
2085 5055 9.513906 TCTTGTTTCTTGACATATCAACCAATA 57.486 29.630 0.00 0.00 40.01 1.90
2095 5065 8.685427 TGACATATCAACCAATAAAAGATGTGG 58.315 33.333 0.00 0.00 33.74 4.17
2096 5066 8.010733 ACATATCAACCAATAAAAGATGTGGG 57.989 34.615 0.00 0.00 33.74 4.61
2097 5067 7.838696 ACATATCAACCAATAAAAGATGTGGGA 59.161 33.333 0.00 0.00 33.74 4.37
2098 5068 5.975693 TCAACCAATAAAAGATGTGGGAC 57.024 39.130 0.00 0.00 35.32 4.46
2099 5069 4.457603 TCAACCAATAAAAGATGTGGGACG 59.542 41.667 0.00 0.00 35.32 4.79
2100 5070 4.028993 ACCAATAAAAGATGTGGGACGT 57.971 40.909 0.00 0.00 35.32 4.34
2101 5071 3.756434 ACCAATAAAAGATGTGGGACGTG 59.244 43.478 0.00 0.00 35.32 4.49
2102 5072 3.427503 CCAATAAAAGATGTGGGACGTGC 60.428 47.826 0.00 0.00 0.00 5.34
2103 5073 2.552599 TAAAAGATGTGGGACGTGCA 57.447 45.000 9.96 0.00 0.00 4.57
2104 5074 1.909700 AAAAGATGTGGGACGTGCAT 58.090 45.000 9.96 0.15 0.00 3.96
2105 5075 1.167851 AAAGATGTGGGACGTGCATG 58.832 50.000 9.96 3.82 0.00 4.06
2106 5076 1.308069 AAGATGTGGGACGTGCATGC 61.308 55.000 11.82 11.82 0.00 4.06
2107 5077 1.746615 GATGTGGGACGTGCATGCT 60.747 57.895 20.33 0.00 0.00 3.79
2108 5078 1.303561 ATGTGGGACGTGCATGCTT 60.304 52.632 20.33 2.66 0.00 3.91
2109 5079 0.895100 ATGTGGGACGTGCATGCTTT 60.895 50.000 20.33 2.25 0.00 3.51
2110 5080 1.210155 GTGGGACGTGCATGCTTTC 59.790 57.895 20.33 11.80 0.00 2.62
2111 5081 1.228094 TGGGACGTGCATGCTTTCA 60.228 52.632 20.33 6.00 0.00 2.69
2112 5082 0.821301 TGGGACGTGCATGCTTTCAA 60.821 50.000 20.33 0.00 0.00 2.69
2113 5083 0.527565 GGGACGTGCATGCTTTCAAT 59.472 50.000 20.33 0.00 0.00 2.57
2114 5084 1.621107 GGACGTGCATGCTTTCAATG 58.379 50.000 20.33 5.93 0.00 2.82
2115 5085 1.621107 GACGTGCATGCTTTCAATGG 58.379 50.000 20.33 1.67 0.00 3.16
2116 5086 1.199789 GACGTGCATGCTTTCAATGGA 59.800 47.619 20.33 0.00 0.00 3.41
2117 5087 1.068333 ACGTGCATGCTTTCAATGGAC 60.068 47.619 20.33 4.04 34.05 4.02
2118 5088 1.621107 GTGCATGCTTTCAATGGACG 58.379 50.000 20.33 0.00 0.00 4.79
2119 5089 1.199789 GTGCATGCTTTCAATGGACGA 59.800 47.619 20.33 0.00 0.00 4.20
2120 5090 1.199789 TGCATGCTTTCAATGGACGAC 59.800 47.619 20.33 0.00 0.00 4.34
2121 5091 1.468054 GCATGCTTTCAATGGACGACC 60.468 52.381 11.37 0.00 0.00 4.79
2133 5103 2.612604 TGGACGACCAAATACGACATG 58.387 47.619 3.49 0.00 43.91 3.21
2134 5104 1.326548 GGACGACCAAATACGACATGC 59.673 52.381 0.00 0.00 35.97 4.06
2135 5105 1.996898 GACGACCAAATACGACATGCA 59.003 47.619 0.00 0.00 0.00 3.96
2136 5106 1.999735 ACGACCAAATACGACATGCAG 59.000 47.619 0.00 0.00 0.00 4.41
2137 5107 1.999735 CGACCAAATACGACATGCAGT 59.000 47.619 0.00 0.00 0.00 4.40
2138 5108 2.222796 CGACCAAATACGACATGCAGTG 60.223 50.000 0.00 0.00 0.00 3.66
2139 5109 2.083774 ACCAAATACGACATGCAGTGG 58.916 47.619 0.00 0.00 0.00 4.00
2140 5110 2.083774 CCAAATACGACATGCAGTGGT 58.916 47.619 0.00 0.81 42.22 4.16
2141 5111 2.487762 CCAAATACGACATGCAGTGGTT 59.512 45.455 8.67 0.00 39.97 3.67
2142 5112 3.687212 CCAAATACGACATGCAGTGGTTA 59.313 43.478 8.67 0.00 39.97 2.85
2143 5113 4.155099 CCAAATACGACATGCAGTGGTTAA 59.845 41.667 8.67 0.00 39.97 2.01
2144 5114 5.163663 CCAAATACGACATGCAGTGGTTAAT 60.164 40.000 8.67 0.00 39.97 1.40
2145 5115 6.321717 CAAATACGACATGCAGTGGTTAATT 58.678 36.000 8.67 2.98 39.97 1.40
2146 5116 6.509418 AATACGACATGCAGTGGTTAATTT 57.491 33.333 8.67 0.00 39.97 1.82
2147 5117 7.618502 AATACGACATGCAGTGGTTAATTTA 57.381 32.000 8.67 0.00 39.97 1.40
2148 5118 7.801716 ATACGACATGCAGTGGTTAATTTAT 57.198 32.000 8.67 0.00 39.97 1.40
2149 5119 6.509418 ACGACATGCAGTGGTTAATTTATT 57.491 33.333 0.00 0.00 35.47 1.40
2150 5120 6.321717 ACGACATGCAGTGGTTAATTTATTG 58.678 36.000 0.00 0.00 35.47 1.90
2151 5121 5.229887 CGACATGCAGTGGTTAATTTATTGC 59.770 40.000 0.00 0.00 0.00 3.56
2152 5122 6.035368 ACATGCAGTGGTTAATTTATTGCA 57.965 33.333 0.00 8.42 43.24 4.08
2155 5125 4.869297 TGCAGTGGTTAATTTATTGCATGC 59.131 37.500 11.82 11.82 35.41 4.06
2156 5126 4.869297 GCAGTGGTTAATTTATTGCATGCA 59.131 37.500 18.46 18.46 0.00 3.96
2157 5127 5.350914 GCAGTGGTTAATTTATTGCATGCAA 59.649 36.000 33.57 33.57 40.47 4.08
2158 5128 6.037391 GCAGTGGTTAATTTATTGCATGCAAT 59.963 34.615 39.40 39.40 46.85 3.56
2201 5171 7.898014 ACATTAAGTTCTCTTGTTTTTCCCT 57.102 32.000 0.00 0.00 35.36 4.20
2202 5172 7.941919 ACATTAAGTTCTCTTGTTTTTCCCTC 58.058 34.615 0.00 0.00 35.36 4.30
2203 5173 6.954487 TTAAGTTCTCTTGTTTTTCCCTCC 57.046 37.500 0.00 0.00 35.36 4.30
2204 5174 4.519906 AGTTCTCTTGTTTTTCCCTCCA 57.480 40.909 0.00 0.00 0.00 3.86
2205 5175 4.207955 AGTTCTCTTGTTTTTCCCTCCAC 58.792 43.478 0.00 0.00 0.00 4.02
2206 5176 3.223674 TCTCTTGTTTTTCCCTCCACC 57.776 47.619 0.00 0.00 0.00 4.61
2207 5177 2.783510 TCTCTTGTTTTTCCCTCCACCT 59.216 45.455 0.00 0.00 0.00 4.00
2208 5178 3.204382 TCTCTTGTTTTTCCCTCCACCTT 59.796 43.478 0.00 0.00 0.00 3.50
2209 5179 3.295973 TCTTGTTTTTCCCTCCACCTTG 58.704 45.455 0.00 0.00 0.00 3.61
2210 5180 3.053245 TCTTGTTTTTCCCTCCACCTTGA 60.053 43.478 0.00 0.00 0.00 3.02
2211 5181 3.611025 TGTTTTTCCCTCCACCTTGAT 57.389 42.857 0.00 0.00 0.00 2.57
2212 5182 3.922375 TGTTTTTCCCTCCACCTTGATT 58.078 40.909 0.00 0.00 0.00 2.57
2213 5183 3.640967 TGTTTTTCCCTCCACCTTGATTG 59.359 43.478 0.00 0.00 0.00 2.67
2214 5184 1.923356 TTTCCCTCCACCTTGATTGC 58.077 50.000 0.00 0.00 0.00 3.56
2215 5185 0.322456 TTCCCTCCACCTTGATTGCG 60.322 55.000 0.00 0.00 0.00 4.85
2216 5186 1.198094 TCCCTCCACCTTGATTGCGA 61.198 55.000 0.00 0.00 0.00 5.10
2217 5187 0.107017 CCCTCCACCTTGATTGCGAT 60.107 55.000 0.00 0.00 0.00 4.58
2218 5188 1.019673 CCTCCACCTTGATTGCGATG 58.980 55.000 0.00 0.00 0.00 3.84
2219 5189 1.679944 CCTCCACCTTGATTGCGATGT 60.680 52.381 0.00 0.00 0.00 3.06
2220 5190 1.399440 CTCCACCTTGATTGCGATGTG 59.601 52.381 0.00 0.00 0.00 3.21
2221 5191 0.179156 CCACCTTGATTGCGATGTGC 60.179 55.000 0.00 0.00 46.70 4.57
2232 5202 0.370273 GCGATGTGCAACCTAAGACG 59.630 55.000 0.00 0.00 45.45 4.18
2233 5203 1.990799 CGATGTGCAACCTAAGACGA 58.009 50.000 0.00 0.00 34.36 4.20
2234 5204 1.654105 CGATGTGCAACCTAAGACGAC 59.346 52.381 0.00 0.00 34.36 4.34
2235 5205 2.671351 CGATGTGCAACCTAAGACGACT 60.671 50.000 0.00 0.00 34.36 4.18
2236 5206 2.902705 TGTGCAACCTAAGACGACTT 57.097 45.000 5.32 5.32 36.65 3.01
2237 5207 4.491676 GATGTGCAACCTAAGACGACTTA 58.508 43.478 7.14 7.14 35.03 2.24
2238 5208 3.645884 TGTGCAACCTAAGACGACTTAC 58.354 45.455 3.16 0.00 35.03 2.34
2239 5209 3.854414 TGTGCAACCTAAGACGACTTACG 60.854 47.826 3.16 3.12 42.13 3.18
2240 5210 1.652619 GCAACCTAAGACGACTTACGC 59.347 52.381 3.16 1.58 46.94 4.42
2241 5211 2.923605 GCAACCTAAGACGACTTACGCA 60.924 50.000 3.16 0.00 46.94 5.24
2242 5212 2.626088 ACCTAAGACGACTTACGCAC 57.374 50.000 3.16 0.00 46.94 5.34
2243 5213 1.200948 ACCTAAGACGACTTACGCACC 59.799 52.381 3.16 0.00 46.94 5.01
2244 5214 1.471684 CCTAAGACGACTTACGCACCT 59.528 52.381 3.16 0.00 46.94 4.00
2245 5215 2.679837 CCTAAGACGACTTACGCACCTA 59.320 50.000 3.16 0.00 46.94 3.08
2246 5216 2.915738 AAGACGACTTACGCACCTAG 57.084 50.000 0.00 0.00 46.94 3.02
2247 5217 2.105006 AGACGACTTACGCACCTAGA 57.895 50.000 0.00 0.00 46.94 2.43
2248 5218 2.641305 AGACGACTTACGCACCTAGAT 58.359 47.619 0.00 0.00 46.94 1.98
2249 5219 2.355132 AGACGACTTACGCACCTAGATG 59.645 50.000 0.00 0.00 46.94 2.90
2250 5220 1.404391 ACGACTTACGCACCTAGATGG 59.596 52.381 0.00 0.00 46.94 3.51
2251 5221 1.674441 CGACTTACGCACCTAGATGGA 59.326 52.381 0.00 0.00 35.82 3.41
2252 5222 2.287069 CGACTTACGCACCTAGATGGAG 60.287 54.545 0.00 0.00 35.82 3.86
2253 5223 2.032620 ACTTACGCACCTAGATGGAGG 58.967 52.381 0.00 0.00 42.89 4.30
2254 5224 1.341531 CTTACGCACCTAGATGGAGGG 59.658 57.143 0.00 0.00 41.36 4.30
2300 5270 7.006831 CGTACGTAAATAGATATACTTGGTGCG 59.993 40.741 7.22 0.00 0.00 5.34
2433 5424 7.659390 AGTCTGTATTCTTGAAAACAGGAAGAG 59.341 37.037 0.00 0.00 39.80 2.85
2461 5453 1.798223 TGGAAGACAAACAATCGCTCG 59.202 47.619 0.00 0.00 0.00 5.03
2473 5465 1.291877 ATCGCTCGTGGTGCAAACTC 61.292 55.000 0.00 0.00 0.00 3.01
2474 5466 1.956170 CGCTCGTGGTGCAAACTCT 60.956 57.895 0.00 0.00 0.00 3.24
2491 5487 1.766461 CTGGGGGTACTAGGGCCTG 60.766 68.421 18.53 8.95 0.00 4.85
2597 5593 7.151308 AGTAATCAGACAGCATATAACTCAGC 58.849 38.462 0.00 0.00 0.00 4.26
2613 5609 1.302832 AGCAGGGTTTTGGAGCTCG 60.303 57.895 7.83 0.00 0.00 5.03
2619 5615 1.001706 GGGTTTTGGAGCTCGTTGTTC 60.002 52.381 7.83 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.651808 TCACTTGATTGAAAAATTCTCTCACC 58.348 34.615 0.00 0.00 0.00 4.02
1 2 9.178427 CTTCACTTGATTGAAAAATTCTCTCAC 57.822 33.333 0.00 0.00 35.07 3.51
2 3 8.355169 CCTTCACTTGATTGAAAAATTCTCTCA 58.645 33.333 0.00 0.00 35.07 3.27
3 4 8.571336 TCCTTCACTTGATTGAAAAATTCTCTC 58.429 33.333 0.00 0.00 35.07 3.20
4 5 8.469309 TCCTTCACTTGATTGAAAAATTCTCT 57.531 30.769 0.00 0.00 35.07 3.10
5 6 9.136952 CATCCTTCACTTGATTGAAAAATTCTC 57.863 33.333 0.00 0.00 35.07 2.87
6 7 8.863086 TCATCCTTCACTTGATTGAAAAATTCT 58.137 29.630 0.00 0.00 35.07 2.40
7 8 9.480053 TTCATCCTTCACTTGATTGAAAAATTC 57.520 29.630 0.00 0.00 35.07 2.17
8 9 9.485206 CTTCATCCTTCACTTGATTGAAAAATT 57.515 29.630 0.00 0.00 35.07 1.82
9 10 8.863086 TCTTCATCCTTCACTTGATTGAAAAAT 58.137 29.630 0.00 0.00 35.07 1.82
10 11 8.236585 TCTTCATCCTTCACTTGATTGAAAAA 57.763 30.769 0.00 0.00 35.07 1.94
11 12 7.822161 TCTTCATCCTTCACTTGATTGAAAA 57.178 32.000 0.00 0.00 35.07 2.29
12 13 7.449395 ACATCTTCATCCTTCACTTGATTGAAA 59.551 33.333 0.00 0.00 35.07 2.69
13 14 6.944290 ACATCTTCATCCTTCACTTGATTGAA 59.056 34.615 0.00 0.00 34.30 2.69
14 15 6.479006 ACATCTTCATCCTTCACTTGATTGA 58.521 36.000 0.00 0.00 0.00 2.57
15 16 6.373495 TGACATCTTCATCCTTCACTTGATTG 59.627 38.462 0.00 0.00 0.00 2.67
16 17 6.479006 TGACATCTTCATCCTTCACTTGATT 58.521 36.000 0.00 0.00 0.00 2.57
17 18 6.058553 TGACATCTTCATCCTTCACTTGAT 57.941 37.500 0.00 0.00 0.00 2.57
18 19 5.488262 TGACATCTTCATCCTTCACTTGA 57.512 39.130 0.00 0.00 0.00 3.02
29 30 6.888088 TTGGAACAGATTGATGACATCTTCAT 59.112 34.615 16.25 6.10 44.59 2.57
30 31 5.807909 TGGAACAGATTGATGACATCTTCA 58.192 37.500 16.25 1.49 39.11 3.02
31 32 6.748333 TTGGAACAGATTGATGACATCTTC 57.252 37.500 16.25 12.49 42.39 2.87
32 33 7.528996 TTTTGGAACAGATTGATGACATCTT 57.471 32.000 16.25 4.27 42.39 2.40
33 34 7.309621 CCTTTTTGGAACAGATTGATGACATCT 60.310 37.037 16.25 0.00 42.39 2.90
34 35 6.810182 CCTTTTTGGAACAGATTGATGACATC 59.190 38.462 8.59 8.59 42.39 3.06
35 36 6.694447 CCTTTTTGGAACAGATTGATGACAT 58.306 36.000 0.00 0.00 42.39 3.06
36 37 5.509501 GCCTTTTTGGAACAGATTGATGACA 60.510 40.000 0.00 0.00 42.39 3.58
37 38 4.925646 GCCTTTTTGGAACAGATTGATGAC 59.074 41.667 0.00 0.00 42.39 3.06
38 39 4.321156 CGCCTTTTTGGAACAGATTGATGA 60.321 41.667 0.00 0.00 42.39 2.92
39 40 3.922240 CGCCTTTTTGGAACAGATTGATG 59.078 43.478 0.00 0.00 42.39 3.07
40 41 3.826157 TCGCCTTTTTGGAACAGATTGAT 59.174 39.130 0.00 0.00 42.39 2.57
41 42 3.004315 GTCGCCTTTTTGGAACAGATTGA 59.996 43.478 0.00 0.00 42.39 2.57
42 43 3.308530 GTCGCCTTTTTGGAACAGATTG 58.691 45.455 0.00 0.00 42.39 2.67
43 44 2.296190 GGTCGCCTTTTTGGAACAGATT 59.704 45.455 0.00 0.00 42.39 2.40
44 45 1.886542 GGTCGCCTTTTTGGAACAGAT 59.113 47.619 0.00 0.00 42.39 2.90
45 46 1.314730 GGTCGCCTTTTTGGAACAGA 58.685 50.000 0.00 0.00 42.39 3.41
46 47 0.040425 CGGTCGCCTTTTTGGAACAG 60.040 55.000 0.00 0.00 42.39 3.16
47 48 2.026522 CGGTCGCCTTTTTGGAACA 58.973 52.632 0.00 0.00 38.35 3.18
48 49 1.371267 GCGGTCGCCTTTTTGGAAC 60.371 57.895 3.73 0.00 38.35 3.62
49 50 3.035727 GCGGTCGCCTTTTTGGAA 58.964 55.556 3.73 0.00 38.35 3.53
59 60 0.782384 CAATATAACTCGGCGGTCGC 59.218 55.000 7.21 6.83 39.05 5.19
60 61 2.129823 ACAATATAACTCGGCGGTCG 57.870 50.000 7.21 0.00 40.90 4.79
61 62 4.863491 TCTTACAATATAACTCGGCGGTC 58.137 43.478 7.21 0.00 0.00 4.79
62 63 4.924305 TCTTACAATATAACTCGGCGGT 57.076 40.909 7.21 0.19 0.00 5.68
63 64 5.287226 ACTTCTTACAATATAACTCGGCGG 58.713 41.667 7.21 0.00 0.00 6.13
64 65 9.784680 ATATACTTCTTACAATATAACTCGGCG 57.215 33.333 0.00 0.00 0.00 6.46
90 91 9.739276 AGTACCTTTTGATTGATAAAGTGATGA 57.261 29.630 0.00 0.00 31.07 2.92
105 106 9.093970 CGACATGAATACATAAGTACCTTTTGA 57.906 33.333 0.00 0.00 35.09 2.69
106 107 8.879759 ACGACATGAATACATAAGTACCTTTTG 58.120 33.333 0.00 0.00 35.09 2.44
107 108 9.444600 AACGACATGAATACATAAGTACCTTTT 57.555 29.630 0.00 0.00 35.09 2.27
110 111 9.692749 CATAACGACATGAATACATAAGTACCT 57.307 33.333 0.00 0.00 35.09 3.08
111 112 8.922676 CCATAACGACATGAATACATAAGTACC 58.077 37.037 0.00 0.00 35.09 3.34
112 113 9.472361 ACCATAACGACATGAATACATAAGTAC 57.528 33.333 0.00 0.00 35.09 2.73
113 114 9.687210 GACCATAACGACATGAATACATAAGTA 57.313 33.333 0.00 0.00 35.09 2.24
114 115 8.421784 AGACCATAACGACATGAATACATAAGT 58.578 33.333 0.00 0.00 35.09 2.24
115 116 8.703336 CAGACCATAACGACATGAATACATAAG 58.297 37.037 0.00 0.00 35.09 1.73
116 117 8.417884 TCAGACCATAACGACATGAATACATAA 58.582 33.333 0.00 0.00 35.09 1.90
117 118 7.947282 TCAGACCATAACGACATGAATACATA 58.053 34.615 0.00 0.00 35.09 2.29
118 119 6.816136 TCAGACCATAACGACATGAATACAT 58.184 36.000 0.00 0.00 37.19 2.29
119 120 6.215495 TCAGACCATAACGACATGAATACA 57.785 37.500 0.00 0.00 0.00 2.29
120 121 7.865889 TGTATCAGACCATAACGACATGAATAC 59.134 37.037 0.00 0.00 0.00 1.89
121 122 7.947282 TGTATCAGACCATAACGACATGAATA 58.053 34.615 0.00 0.00 0.00 1.75
122 123 6.816136 TGTATCAGACCATAACGACATGAAT 58.184 36.000 0.00 0.00 0.00 2.57
123 124 6.215495 TGTATCAGACCATAACGACATGAA 57.785 37.500 0.00 0.00 0.00 2.57
124 125 5.845391 TGTATCAGACCATAACGACATGA 57.155 39.130 0.00 0.00 0.00 3.07
125 126 6.701400 TCAATGTATCAGACCATAACGACATG 59.299 38.462 0.00 0.00 0.00 3.21
126 127 6.816136 TCAATGTATCAGACCATAACGACAT 58.184 36.000 0.00 0.00 0.00 3.06
127 128 6.215495 TCAATGTATCAGACCATAACGACA 57.785 37.500 0.00 0.00 0.00 4.35
128 129 7.534085 TTTCAATGTATCAGACCATAACGAC 57.466 36.000 0.00 0.00 0.00 4.34
129 130 9.996554 ATATTTCAATGTATCAGACCATAACGA 57.003 29.630 0.00 0.00 0.00 3.85
133 134 9.797642 AGCAATATTTCAATGTATCAGACCATA 57.202 29.630 0.00 0.00 0.00 2.74
134 135 8.701908 AGCAATATTTCAATGTATCAGACCAT 57.298 30.769 0.00 0.00 0.00 3.55
135 136 9.797642 ATAGCAATATTTCAATGTATCAGACCA 57.202 29.630 0.00 0.00 0.00 4.02
139 140 9.350357 GGCAATAGCAATATTTCAATGTATCAG 57.650 33.333 0.00 0.00 44.61 2.90
140 141 9.081204 AGGCAATAGCAATATTTCAATGTATCA 57.919 29.630 0.00 0.00 44.61 2.15
141 142 9.918630 AAGGCAATAGCAATATTTCAATGTATC 57.081 29.630 0.00 0.00 44.61 2.24
152 153 9.354673 ACACTAACATAAAGGCAATAGCAATAT 57.645 29.630 0.00 0.00 44.61 1.28
153 154 8.746052 ACACTAACATAAAGGCAATAGCAATA 57.254 30.769 0.00 0.00 44.61 1.90
154 155 7.645058 ACACTAACATAAAGGCAATAGCAAT 57.355 32.000 0.00 0.00 44.61 3.56
155 156 7.040062 ACAACACTAACATAAAGGCAATAGCAA 60.040 33.333 0.00 0.00 44.61 3.91
156 157 6.432783 ACAACACTAACATAAAGGCAATAGCA 59.567 34.615 0.00 0.00 44.61 3.49
157 158 6.852664 ACAACACTAACATAAAGGCAATAGC 58.147 36.000 0.00 0.00 41.10 2.97
158 159 9.691362 AAAACAACACTAACATAAAGGCAATAG 57.309 29.630 0.00 0.00 0.00 1.73
159 160 9.469807 CAAAACAACACTAACATAAAGGCAATA 57.530 29.630 0.00 0.00 0.00 1.90
160 161 7.984617 ACAAAACAACACTAACATAAAGGCAAT 59.015 29.630 0.00 0.00 0.00 3.56
161 162 7.324178 ACAAAACAACACTAACATAAAGGCAA 58.676 30.769 0.00 0.00 0.00 4.52
162 163 6.868622 ACAAAACAACACTAACATAAAGGCA 58.131 32.000 0.00 0.00 0.00 4.75
163 164 7.489757 TGAACAAAACAACACTAACATAAAGGC 59.510 33.333 0.00 0.00 0.00 4.35
164 165 8.918961 TGAACAAAACAACACTAACATAAAGG 57.081 30.769 0.00 0.00 0.00 3.11
182 183 9.838975 CACAACAGTAGCAAATATATGAACAAA 57.161 29.630 0.00 0.00 0.00 2.83
183 184 9.008965 ACACAACAGTAGCAAATATATGAACAA 57.991 29.630 0.00 0.00 0.00 2.83
184 185 8.560355 ACACAACAGTAGCAAATATATGAACA 57.440 30.769 0.00 0.00 0.00 3.18
185 186 9.277565 CAACACAACAGTAGCAAATATATGAAC 57.722 33.333 0.00 0.00 0.00 3.18
186 187 9.008965 ACAACACAACAGTAGCAAATATATGAA 57.991 29.630 0.00 0.00 0.00 2.57
187 188 8.560355 ACAACACAACAGTAGCAAATATATGA 57.440 30.769 0.00 0.00 0.00 2.15
188 189 9.624697 AAACAACACAACAGTAGCAAATATATG 57.375 29.630 0.00 0.00 0.00 1.78
189 190 9.624697 CAAACAACACAACAGTAGCAAATATAT 57.375 29.630 0.00 0.00 0.00 0.86
190 191 8.079203 CCAAACAACACAACAGTAGCAAATATA 58.921 33.333 0.00 0.00 0.00 0.86
191 192 6.922957 CCAAACAACACAACAGTAGCAAATAT 59.077 34.615 0.00 0.00 0.00 1.28
192 193 6.127591 ACCAAACAACACAACAGTAGCAAATA 60.128 34.615 0.00 0.00 0.00 1.40
193 194 5.108517 CCAAACAACACAACAGTAGCAAAT 58.891 37.500 0.00 0.00 0.00 2.32
194 195 4.021894 ACCAAACAACACAACAGTAGCAAA 60.022 37.500 0.00 0.00 0.00 3.68
195 196 3.508012 ACCAAACAACACAACAGTAGCAA 59.492 39.130 0.00 0.00 0.00 3.91
196 197 3.085533 ACCAAACAACACAACAGTAGCA 58.914 40.909 0.00 0.00 0.00 3.49
197 198 3.488553 GGACCAAACAACACAACAGTAGC 60.489 47.826 0.00 0.00 0.00 3.58
198 199 3.692101 TGGACCAAACAACACAACAGTAG 59.308 43.478 0.00 0.00 0.00 2.57
199 200 3.687125 TGGACCAAACAACACAACAGTA 58.313 40.909 0.00 0.00 0.00 2.74
200 201 2.520069 TGGACCAAACAACACAACAGT 58.480 42.857 0.00 0.00 0.00 3.55
201 202 3.799281 ATGGACCAAACAACACAACAG 57.201 42.857 0.00 0.00 0.00 3.16
202 203 4.500545 GCATATGGACCAAACAACACAACA 60.501 41.667 4.56 0.00 0.00 3.33
203 204 3.987220 GCATATGGACCAAACAACACAAC 59.013 43.478 4.56 0.00 0.00 3.32
204 205 3.006323 GGCATATGGACCAAACAACACAA 59.994 43.478 4.56 0.00 0.00 3.33
205 206 2.560542 GGCATATGGACCAAACAACACA 59.439 45.455 4.56 0.00 0.00 3.72
206 207 2.825532 AGGCATATGGACCAAACAACAC 59.174 45.455 4.56 0.00 0.00 3.32
207 208 3.088532 GAGGCATATGGACCAAACAACA 58.911 45.455 4.56 0.00 0.00 3.33
208 209 3.088532 TGAGGCATATGGACCAAACAAC 58.911 45.455 4.56 0.00 0.00 3.32
209 210 3.448093 TGAGGCATATGGACCAAACAA 57.552 42.857 4.56 0.00 0.00 2.83
210 211 3.668141 ATGAGGCATATGGACCAAACA 57.332 42.857 4.56 1.55 0.00 2.83
211 212 5.827797 TCTAAATGAGGCATATGGACCAAAC 59.172 40.000 4.56 0.00 0.00 2.93
212 213 6.012337 TCTAAATGAGGCATATGGACCAAA 57.988 37.500 4.56 0.00 0.00 3.28
213 214 5.624159 CTCTAAATGAGGCATATGGACCAA 58.376 41.667 4.56 0.00 39.08 3.67
214 215 4.505566 GCTCTAAATGAGGCATATGGACCA 60.506 45.833 4.56 0.00 42.87 4.02
215 216 4.006319 GCTCTAAATGAGGCATATGGACC 58.994 47.826 4.56 0.00 42.87 4.46
245 246 4.059773 AGGCTGGGTATTCATCCAAAAA 57.940 40.909 0.00 0.00 31.97 1.94
246 247 3.756082 AGGCTGGGTATTCATCCAAAA 57.244 42.857 0.00 0.00 31.97 2.44
247 248 3.011144 TGAAGGCTGGGTATTCATCCAAA 59.989 43.478 0.00 0.00 31.97 3.28
248 249 2.580322 TGAAGGCTGGGTATTCATCCAA 59.420 45.455 0.00 0.00 31.97 3.53
249 250 2.204463 TGAAGGCTGGGTATTCATCCA 58.796 47.619 0.00 0.00 0.00 3.41
250 251 3.515602 ATGAAGGCTGGGTATTCATCC 57.484 47.619 0.00 0.00 38.92 3.51
251 252 4.279420 GGAAATGAAGGCTGGGTATTCATC 59.721 45.833 0.00 0.00 41.56 2.92
252 253 4.078980 AGGAAATGAAGGCTGGGTATTCAT 60.079 41.667 0.00 0.00 43.64 2.57
253 254 3.269381 AGGAAATGAAGGCTGGGTATTCA 59.731 43.478 0.00 0.00 37.36 2.57
254 255 3.633986 CAGGAAATGAAGGCTGGGTATTC 59.366 47.826 0.00 0.00 0.00 1.75
255 256 3.628257 CCAGGAAATGAAGGCTGGGTATT 60.628 47.826 0.00 0.00 0.00 1.89
256 257 2.091665 CCAGGAAATGAAGGCTGGGTAT 60.092 50.000 0.00 0.00 0.00 2.73
257 258 1.284785 CCAGGAAATGAAGGCTGGGTA 59.715 52.381 0.00 0.00 0.00 3.69
258 259 0.040204 CCAGGAAATGAAGGCTGGGT 59.960 55.000 0.00 0.00 0.00 4.51
259 260 1.325476 GCCAGGAAATGAAGGCTGGG 61.325 60.000 0.00 0.00 43.70 4.45
260 261 1.660560 CGCCAGGAAATGAAGGCTGG 61.661 60.000 0.00 0.00 44.85 4.85
261 262 1.805254 CGCCAGGAAATGAAGGCTG 59.195 57.895 0.00 0.00 44.85 4.85
262 263 2.048603 GCGCCAGGAAATGAAGGCT 61.049 57.895 0.00 0.00 44.85 4.58
263 264 2.491621 GCGCCAGGAAATGAAGGC 59.508 61.111 0.00 0.00 43.61 4.35
264 265 2.764314 CGGCGCCAGGAAATGAAGG 61.764 63.158 28.98 0.37 0.00 3.46
265 266 2.793946 CGGCGCCAGGAAATGAAG 59.206 61.111 28.98 0.98 0.00 3.02
266 267 3.439540 GCGGCGCCAGGAAATGAA 61.440 61.111 28.98 0.00 0.00 2.57
285 286 1.097547 GGACAAGCAGCACACACAGT 61.098 55.000 0.00 0.00 0.00 3.55
286 287 1.650912 GGACAAGCAGCACACACAG 59.349 57.895 0.00 0.00 0.00 3.66
287 288 2.179547 CGGACAAGCAGCACACACA 61.180 57.895 0.00 0.00 0.00 3.72
349 350 1.988107 AGAGAAAGCCACCATCTTGGA 59.012 47.619 0.00 0.00 40.96 3.53
350 351 2.089980 CAGAGAAAGCCACCATCTTGG 58.910 52.381 0.00 0.00 45.02 3.61
358 359 0.687354 TCTGGTCCAGAGAAAGCCAC 59.313 55.000 18.15 0.00 35.39 5.01
396 400 1.066752 CGAATGCCGACGGGACATA 59.933 57.895 17.22 0.00 41.76 2.29
453 457 0.534203 TCACCCCGAAGAGCAACAAC 60.534 55.000 0.00 0.00 0.00 3.32
466 470 0.395724 CTACCAAGGCCAATCACCCC 60.396 60.000 5.01 0.00 0.00 4.95
549 574 1.202177 GCAGTGCAAATATCACACCGG 60.202 52.381 11.09 0.00 36.93 5.28
550 575 1.468127 TGCAGTGCAAATATCACACCG 59.532 47.619 17.26 0.00 34.76 4.94
559 584 4.168014 CGAACAATATGTGCAGTGCAAAT 58.832 39.130 23.92 23.92 41.47 2.32
572 597 1.137086 ACCTCTCGCTGCGAACAATAT 59.863 47.619 25.86 6.77 34.74 1.28
574 599 0.530744 TACCTCTCGCTGCGAACAAT 59.469 50.000 25.86 13.93 34.74 2.71
674 2328 0.464036 AGTGGACGTGTGCTCTTTCA 59.536 50.000 0.00 0.00 0.00 2.69
685 2341 3.447918 TTTCTTTTCTCGAGTGGACGT 57.552 42.857 13.13 0.00 34.70 4.34
820 2478 1.134694 GCCGATCGCCACTTTTGTC 59.865 57.895 10.32 0.00 0.00 3.18
840 2498 2.227089 CTAGTGGTCGGAGGCACACC 62.227 65.000 0.00 0.00 34.67 4.16
889 2547 1.378531 TTCATGGCGATTGGTGTAGC 58.621 50.000 0.00 0.00 0.00 3.58
978 2637 1.486145 ATCGGTTGGTTCCTTCCGGT 61.486 55.000 18.32 12.51 42.71 5.28
1050 2709 1.257750 TAAGCAGCCCGCAGAAGAGA 61.258 55.000 0.00 0.00 46.13 3.10
1087 2746 2.202756 GACGAGGATGGTGGCGAC 60.203 66.667 0.00 0.00 0.00 5.19
1187 2846 1.600638 GGGGTGAGGGTAAAGTCGG 59.399 63.158 0.00 0.00 0.00 4.79
1194 2853 2.682494 GTGCTCGGGGTGAGGGTA 60.682 66.667 0.00 0.00 45.38 3.69
1251 2910 2.818274 CGGGAGTTAGGGTTGCGC 60.818 66.667 0.00 0.00 0.00 6.09
1704 3366 9.158233 GGTAGACTATGCAGATCTAACTACTAG 57.842 40.741 10.87 0.00 31.18 2.57
1771 4738 5.008613 GCGATCAGGGAAACATGCTTAATTA 59.991 40.000 0.00 0.00 43.15 1.40
1825 4792 7.970614 GGCGAAGAGATCAATTTTTATGAAACT 59.029 33.333 0.00 0.00 0.00 2.66
1994 4964 6.073276 GGATTATTTGGTTTTTGCAAGGTGAC 60.073 38.462 0.00 0.00 0.00 3.67
1995 4965 5.994668 GGATTATTTGGTTTTTGCAAGGTGA 59.005 36.000 0.00 0.00 0.00 4.02
1996 4966 5.997129 AGGATTATTTGGTTTTTGCAAGGTG 59.003 36.000 0.00 0.00 0.00 4.00
1997 4967 6.186420 AGGATTATTTGGTTTTTGCAAGGT 57.814 33.333 0.00 0.00 0.00 3.50
1998 4968 8.614469 TTTAGGATTATTTGGTTTTTGCAAGG 57.386 30.769 0.00 0.00 0.00 3.61
2013 4983 9.436957 CACCGCATCTAAGTATTTTAGGATTAT 57.563 33.333 0.00 0.00 0.00 1.28
2014 4984 7.386848 GCACCGCATCTAAGTATTTTAGGATTA 59.613 37.037 0.00 0.00 0.00 1.75
2015 4985 6.204882 GCACCGCATCTAAGTATTTTAGGATT 59.795 38.462 0.00 0.00 0.00 3.01
2016 4986 5.701290 GCACCGCATCTAAGTATTTTAGGAT 59.299 40.000 0.00 0.00 0.00 3.24
2017 4987 5.054477 GCACCGCATCTAAGTATTTTAGGA 58.946 41.667 0.00 0.00 0.00 2.94
2018 4988 4.814234 TGCACCGCATCTAAGTATTTTAGG 59.186 41.667 0.00 0.00 31.71 2.69
2019 4989 5.984233 TGCACCGCATCTAAGTATTTTAG 57.016 39.130 0.00 0.00 31.71 1.85
2033 5003 4.201773 CGAGATAAAAGTTAATGCACCGCA 60.202 41.667 0.00 0.00 44.86 5.69
2034 5004 4.201783 ACGAGATAAAAGTTAATGCACCGC 60.202 41.667 0.00 0.00 0.00 5.68
2035 5005 5.464965 ACGAGATAAAAGTTAATGCACCG 57.535 39.130 0.00 0.00 0.00 4.94
2036 5006 7.527457 AGAAACGAGATAAAAGTTAATGCACC 58.473 34.615 0.00 0.00 0.00 5.01
2037 5007 8.840867 CAAGAAACGAGATAAAAGTTAATGCAC 58.159 33.333 0.00 0.00 0.00 4.57
2038 5008 8.564574 ACAAGAAACGAGATAAAAGTTAATGCA 58.435 29.630 0.00 0.00 0.00 3.96
2039 5009 8.950403 ACAAGAAACGAGATAAAAGTTAATGC 57.050 30.769 0.00 0.00 0.00 3.56
2044 5014 9.503427 CAAGAAACAAGAAACGAGATAAAAGTT 57.497 29.630 0.00 0.00 0.00 2.66
2045 5015 8.889717 TCAAGAAACAAGAAACGAGATAAAAGT 58.110 29.630 0.00 0.00 0.00 2.66
2046 5016 9.159470 GTCAAGAAACAAGAAACGAGATAAAAG 57.841 33.333 0.00 0.00 0.00 2.27
2047 5017 8.670135 TGTCAAGAAACAAGAAACGAGATAAAA 58.330 29.630 0.00 0.00 0.00 1.52
2048 5018 8.203937 TGTCAAGAAACAAGAAACGAGATAAA 57.796 30.769 0.00 0.00 0.00 1.40
2049 5019 7.780008 TGTCAAGAAACAAGAAACGAGATAA 57.220 32.000 0.00 0.00 0.00 1.75
2050 5020 7.962964 ATGTCAAGAAACAAGAAACGAGATA 57.037 32.000 0.00 0.00 31.81 1.98
2051 5021 6.867662 ATGTCAAGAAACAAGAAACGAGAT 57.132 33.333 0.00 0.00 31.81 2.75
2052 5022 7.655732 TGATATGTCAAGAAACAAGAAACGAGA 59.344 33.333 0.00 0.00 31.81 4.04
2053 5023 7.796838 TGATATGTCAAGAAACAAGAAACGAG 58.203 34.615 0.00 0.00 31.81 4.18
2054 5024 7.722795 TGATATGTCAAGAAACAAGAAACGA 57.277 32.000 0.00 0.00 31.81 3.85
2055 5025 7.323656 GGTTGATATGTCAAGAAACAAGAAACG 59.676 37.037 4.98 0.00 44.58 3.60
2056 5026 8.134895 TGGTTGATATGTCAAGAAACAAGAAAC 58.865 33.333 4.98 0.00 44.58 2.78
2057 5027 8.231692 TGGTTGATATGTCAAGAAACAAGAAA 57.768 30.769 4.98 0.00 44.58 2.52
2058 5028 7.815840 TGGTTGATATGTCAAGAAACAAGAA 57.184 32.000 4.98 0.00 44.58 2.52
2059 5029 7.815840 TTGGTTGATATGTCAAGAAACAAGA 57.184 32.000 4.98 0.00 44.58 3.02
2069 5039 8.685427 CCACATCTTTTATTGGTTGATATGTCA 58.315 33.333 0.00 0.00 0.00 3.58
2070 5040 8.137437 CCCACATCTTTTATTGGTTGATATGTC 58.863 37.037 0.00 0.00 0.00 3.06
2071 5041 7.838696 TCCCACATCTTTTATTGGTTGATATGT 59.161 33.333 0.00 0.00 0.00 2.29
2072 5042 8.137437 GTCCCACATCTTTTATTGGTTGATATG 58.863 37.037 0.00 0.00 0.00 1.78
2073 5043 7.013274 CGTCCCACATCTTTTATTGGTTGATAT 59.987 37.037 0.00 0.00 0.00 1.63
2074 5044 6.317642 CGTCCCACATCTTTTATTGGTTGATA 59.682 38.462 0.00 0.00 0.00 2.15
2075 5045 5.125417 CGTCCCACATCTTTTATTGGTTGAT 59.875 40.000 0.00 0.00 0.00 2.57
2076 5046 4.457603 CGTCCCACATCTTTTATTGGTTGA 59.542 41.667 0.00 0.00 0.00 3.18
2077 5047 4.217550 ACGTCCCACATCTTTTATTGGTTG 59.782 41.667 0.00 0.00 0.00 3.77
2078 5048 4.217550 CACGTCCCACATCTTTTATTGGTT 59.782 41.667 0.00 0.00 0.00 3.67
2079 5049 3.756434 CACGTCCCACATCTTTTATTGGT 59.244 43.478 0.00 0.00 0.00 3.67
2080 5050 3.427503 GCACGTCCCACATCTTTTATTGG 60.428 47.826 0.00 0.00 0.00 3.16
2081 5051 3.190327 TGCACGTCCCACATCTTTTATTG 59.810 43.478 0.00 0.00 0.00 1.90
2082 5052 3.417101 TGCACGTCCCACATCTTTTATT 58.583 40.909 0.00 0.00 0.00 1.40
2083 5053 3.066291 TGCACGTCCCACATCTTTTAT 57.934 42.857 0.00 0.00 0.00 1.40
2084 5054 2.552599 TGCACGTCCCACATCTTTTA 57.447 45.000 0.00 0.00 0.00 1.52
2085 5055 1.541147 CATGCACGTCCCACATCTTTT 59.459 47.619 0.00 0.00 0.00 2.27
2086 5056 1.167851 CATGCACGTCCCACATCTTT 58.832 50.000 0.00 0.00 0.00 2.52
2087 5057 1.308069 GCATGCACGTCCCACATCTT 61.308 55.000 14.21 0.00 0.00 2.40
2088 5058 1.746615 GCATGCACGTCCCACATCT 60.747 57.895 14.21 0.00 0.00 2.90
2089 5059 1.308069 AAGCATGCACGTCCCACATC 61.308 55.000 21.98 0.00 0.00 3.06
2090 5060 0.895100 AAAGCATGCACGTCCCACAT 60.895 50.000 21.98 0.00 0.00 3.21
2091 5061 1.514678 GAAAGCATGCACGTCCCACA 61.515 55.000 21.98 0.00 0.00 4.17
2092 5062 1.210155 GAAAGCATGCACGTCCCAC 59.790 57.895 21.98 0.00 0.00 4.61
2093 5063 0.821301 TTGAAAGCATGCACGTCCCA 60.821 50.000 21.98 5.83 0.00 4.37
2094 5064 0.527565 ATTGAAAGCATGCACGTCCC 59.472 50.000 21.98 3.14 0.00 4.46
2095 5065 1.621107 CATTGAAAGCATGCACGTCC 58.379 50.000 21.98 4.60 0.00 4.79
2096 5066 1.199789 TCCATTGAAAGCATGCACGTC 59.800 47.619 21.98 13.89 0.00 4.34
2097 5067 1.068333 GTCCATTGAAAGCATGCACGT 60.068 47.619 21.98 3.66 0.00 4.49
2098 5068 1.621107 GTCCATTGAAAGCATGCACG 58.379 50.000 21.98 0.00 0.00 5.34
2099 5069 1.199789 TCGTCCATTGAAAGCATGCAC 59.800 47.619 21.98 11.31 0.00 4.57
2100 5070 1.199789 GTCGTCCATTGAAAGCATGCA 59.800 47.619 21.98 0.00 0.00 3.96
2101 5071 1.468054 GGTCGTCCATTGAAAGCATGC 60.468 52.381 10.51 10.51 0.00 4.06
2102 5072 1.811965 TGGTCGTCCATTGAAAGCATG 59.188 47.619 0.00 0.00 39.03 4.06
2103 5073 2.198827 TGGTCGTCCATTGAAAGCAT 57.801 45.000 0.00 0.00 39.03 3.79
2104 5074 1.974265 TTGGTCGTCCATTGAAAGCA 58.026 45.000 1.21 0.00 43.91 3.91
2105 5075 3.575965 ATTTGGTCGTCCATTGAAAGC 57.424 42.857 1.21 0.00 43.91 3.51
2106 5076 4.390603 TCGTATTTGGTCGTCCATTGAAAG 59.609 41.667 1.21 0.00 43.91 2.62
2107 5077 4.152759 GTCGTATTTGGTCGTCCATTGAAA 59.847 41.667 1.21 0.00 43.91 2.69
2108 5078 3.680937 GTCGTATTTGGTCGTCCATTGAA 59.319 43.478 1.21 0.00 43.91 2.69
2109 5079 3.255725 GTCGTATTTGGTCGTCCATTGA 58.744 45.455 1.21 0.00 43.91 2.57
2110 5080 2.997303 TGTCGTATTTGGTCGTCCATTG 59.003 45.455 1.21 0.00 43.91 2.82
2111 5081 3.322211 TGTCGTATTTGGTCGTCCATT 57.678 42.857 1.21 0.00 43.91 3.16
2112 5082 3.194861 CATGTCGTATTTGGTCGTCCAT 58.805 45.455 1.21 0.00 43.91 3.41
2113 5083 2.612604 CATGTCGTATTTGGTCGTCCA 58.387 47.619 0.00 0.00 42.66 4.02
2114 5084 1.326548 GCATGTCGTATTTGGTCGTCC 59.673 52.381 0.00 0.00 0.00 4.79
2115 5085 1.996898 TGCATGTCGTATTTGGTCGTC 59.003 47.619 0.00 0.00 0.00 4.20
2116 5086 1.999735 CTGCATGTCGTATTTGGTCGT 59.000 47.619 0.00 0.00 0.00 4.34
2117 5087 1.999735 ACTGCATGTCGTATTTGGTCG 59.000 47.619 0.00 0.00 0.00 4.79
2118 5088 2.095853 CCACTGCATGTCGTATTTGGTC 59.904 50.000 0.00 0.00 0.00 4.02
2119 5089 2.083774 CCACTGCATGTCGTATTTGGT 58.916 47.619 0.00 0.00 0.00 3.67
2120 5090 2.083774 ACCACTGCATGTCGTATTTGG 58.916 47.619 0.00 0.00 0.00 3.28
2121 5091 3.829886 AACCACTGCATGTCGTATTTG 57.170 42.857 0.00 0.00 0.00 2.32
2122 5092 6.509418 AATTAACCACTGCATGTCGTATTT 57.491 33.333 0.00 0.00 0.00 1.40
2123 5093 6.509418 AAATTAACCACTGCATGTCGTATT 57.491 33.333 0.00 0.00 0.00 1.89
2124 5094 7.801716 ATAAATTAACCACTGCATGTCGTAT 57.198 32.000 0.00 0.00 0.00 3.06
2125 5095 7.468441 CAATAAATTAACCACTGCATGTCGTA 58.532 34.615 0.00 0.00 0.00 3.43
2126 5096 6.321717 CAATAAATTAACCACTGCATGTCGT 58.678 36.000 0.00 0.00 0.00 4.34
2127 5097 5.229887 GCAATAAATTAACCACTGCATGTCG 59.770 40.000 0.00 0.00 0.00 4.35
2128 5098 6.098679 TGCAATAAATTAACCACTGCATGTC 58.901 36.000 0.00 0.00 33.65 3.06
2129 5099 6.035368 TGCAATAAATTAACCACTGCATGT 57.965 33.333 0.00 0.00 33.65 3.21
2131 5101 5.524646 GCATGCAATAAATTAACCACTGCAT 59.475 36.000 14.21 0.98 46.86 3.96
2132 5102 4.869297 GCATGCAATAAATTAACCACTGCA 59.131 37.500 14.21 0.00 42.02 4.41
2133 5103 4.869297 TGCATGCAATAAATTAACCACTGC 59.131 37.500 20.30 0.00 0.00 4.40
2134 5104 6.964741 TTGCATGCAATAAATTAACCACTG 57.035 33.333 28.80 0.00 0.00 3.66
2135 5105 7.542534 CATTGCATGCAATAAATTAACCACT 57.457 32.000 38.08 15.85 43.92 4.00
2175 5145 9.416284 AGGGAAAAACAAGAGAACTTAATGTTA 57.584 29.630 0.00 0.00 39.30 2.41
2176 5146 8.306313 AGGGAAAAACAAGAGAACTTAATGTT 57.694 30.769 0.00 0.00 42.38 2.71
2177 5147 7.014326 GGAGGGAAAAACAAGAGAACTTAATGT 59.986 37.037 0.00 0.00 34.70 2.71
2178 5148 7.014230 TGGAGGGAAAAACAAGAGAACTTAATG 59.986 37.037 0.00 0.00 34.70 1.90
2179 5149 7.014326 GTGGAGGGAAAAACAAGAGAACTTAAT 59.986 37.037 0.00 0.00 34.70 1.40
2180 5150 6.320418 GTGGAGGGAAAAACAAGAGAACTTAA 59.680 38.462 0.00 0.00 34.70 1.85
2181 5151 5.826208 GTGGAGGGAAAAACAAGAGAACTTA 59.174 40.000 0.00 0.00 34.70 2.24
2182 5152 4.645136 GTGGAGGGAAAAACAAGAGAACTT 59.355 41.667 0.00 0.00 36.73 2.66
2183 5153 4.207955 GTGGAGGGAAAAACAAGAGAACT 58.792 43.478 0.00 0.00 0.00 3.01
2184 5154 3.318275 GGTGGAGGGAAAAACAAGAGAAC 59.682 47.826 0.00 0.00 0.00 3.01
2185 5155 3.204382 AGGTGGAGGGAAAAACAAGAGAA 59.796 43.478 0.00 0.00 0.00 2.87
2186 5156 2.783510 AGGTGGAGGGAAAAACAAGAGA 59.216 45.455 0.00 0.00 0.00 3.10
2187 5157 3.229697 AGGTGGAGGGAAAAACAAGAG 57.770 47.619 0.00 0.00 0.00 2.85
2188 5158 3.053245 TCAAGGTGGAGGGAAAAACAAGA 60.053 43.478 0.00 0.00 0.00 3.02
2189 5159 3.295973 TCAAGGTGGAGGGAAAAACAAG 58.704 45.455 0.00 0.00 0.00 3.16
2190 5160 3.390175 TCAAGGTGGAGGGAAAAACAA 57.610 42.857 0.00 0.00 0.00 2.83
2191 5161 3.611025 ATCAAGGTGGAGGGAAAAACA 57.389 42.857 0.00 0.00 0.00 2.83
2192 5162 3.554960 GCAATCAAGGTGGAGGGAAAAAC 60.555 47.826 0.00 0.00 0.00 2.43
2193 5163 2.632512 GCAATCAAGGTGGAGGGAAAAA 59.367 45.455 0.00 0.00 0.00 1.94
2194 5164 2.247358 GCAATCAAGGTGGAGGGAAAA 58.753 47.619 0.00 0.00 0.00 2.29
2195 5165 1.886222 CGCAATCAAGGTGGAGGGAAA 60.886 52.381 0.00 0.00 0.00 3.13
2196 5166 0.322456 CGCAATCAAGGTGGAGGGAA 60.322 55.000 0.00 0.00 0.00 3.97
2197 5167 1.198094 TCGCAATCAAGGTGGAGGGA 61.198 55.000 0.00 0.00 0.00 4.20
2198 5168 0.107017 ATCGCAATCAAGGTGGAGGG 60.107 55.000 0.00 0.00 0.00 4.30
2199 5169 1.019673 CATCGCAATCAAGGTGGAGG 58.980 55.000 0.00 0.00 0.00 4.30
2200 5170 1.399440 CACATCGCAATCAAGGTGGAG 59.601 52.381 0.00 0.00 0.00 3.86
2201 5171 1.452110 CACATCGCAATCAAGGTGGA 58.548 50.000 0.00 0.00 0.00 4.02
2202 5172 0.179156 GCACATCGCAATCAAGGTGG 60.179 55.000 0.00 0.00 41.79 4.61
2203 5173 3.317608 GCACATCGCAATCAAGGTG 57.682 52.632 0.00 0.00 41.79 4.00
2213 5183 0.370273 CGTCTTAGGTTGCACATCGC 59.630 55.000 0.00 0.00 42.89 4.58
2214 5184 1.654105 GTCGTCTTAGGTTGCACATCG 59.346 52.381 0.00 0.00 0.00 3.84
2215 5185 2.960819 AGTCGTCTTAGGTTGCACATC 58.039 47.619 0.00 0.00 0.00 3.06
2216 5186 3.402628 AAGTCGTCTTAGGTTGCACAT 57.597 42.857 0.00 0.00 31.46 3.21
2217 5187 2.902705 AAGTCGTCTTAGGTTGCACA 57.097 45.000 0.00 0.00 31.46 4.57
2218 5188 2.660236 CGTAAGTCGTCTTAGGTTGCAC 59.340 50.000 12.12 0.00 36.90 4.57
2219 5189 2.923605 GCGTAAGTCGTCTTAGGTTGCA 60.924 50.000 18.58 0.00 41.35 4.08
2220 5190 1.652619 GCGTAAGTCGTCTTAGGTTGC 59.347 52.381 18.58 10.36 41.35 4.17
2221 5191 2.660236 GTGCGTAAGTCGTCTTAGGTTG 59.340 50.000 18.58 5.65 41.35 3.77
2222 5192 2.352127 GGTGCGTAAGTCGTCTTAGGTT 60.352 50.000 18.58 0.00 41.35 3.50
2223 5193 1.200948 GGTGCGTAAGTCGTCTTAGGT 59.799 52.381 18.58 0.00 41.35 3.08
2224 5194 1.471684 AGGTGCGTAAGTCGTCTTAGG 59.528 52.381 14.92 14.92 41.85 2.69
2225 5195 2.915738 AGGTGCGTAAGTCGTCTTAG 57.084 50.000 2.22 0.00 42.13 2.18
2226 5196 3.599343 TCTAGGTGCGTAAGTCGTCTTA 58.401 45.455 0.00 0.00 42.13 2.10
2227 5197 2.430465 TCTAGGTGCGTAAGTCGTCTT 58.570 47.619 0.00 0.00 42.13 3.01
2228 5198 2.105006 TCTAGGTGCGTAAGTCGTCT 57.895 50.000 0.00 0.00 42.13 4.18
2229 5199 2.541178 CCATCTAGGTGCGTAAGTCGTC 60.541 54.545 0.00 0.00 42.13 4.20
2230 5200 1.404391 CCATCTAGGTGCGTAAGTCGT 59.596 52.381 0.00 0.00 42.13 4.34
2231 5201 1.674441 TCCATCTAGGTGCGTAAGTCG 59.326 52.381 0.00 0.00 39.69 4.18
2232 5202 2.034812 CCTCCATCTAGGTGCGTAAGTC 59.965 54.545 0.00 0.00 39.02 3.01
2233 5203 2.032620 CCTCCATCTAGGTGCGTAAGT 58.967 52.381 0.00 0.00 39.02 2.24
2234 5204 1.341531 CCCTCCATCTAGGTGCGTAAG 59.658 57.143 0.00 0.00 39.02 2.34
2235 5205 1.063492 TCCCTCCATCTAGGTGCGTAA 60.063 52.381 0.00 0.00 39.02 3.18
2236 5206 0.554305 TCCCTCCATCTAGGTGCGTA 59.446 55.000 0.00 0.00 39.02 4.42
2237 5207 0.757188 CTCCCTCCATCTAGGTGCGT 60.757 60.000 0.00 0.00 39.02 5.24
2238 5208 0.757188 ACTCCCTCCATCTAGGTGCG 60.757 60.000 0.00 0.00 39.02 5.34
2239 5209 1.964933 GTACTCCCTCCATCTAGGTGC 59.035 57.143 0.00 0.00 39.02 5.01
2240 5210 2.231529 CGTACTCCCTCCATCTAGGTG 58.768 57.143 0.00 0.00 39.02 4.00
2241 5211 1.851653 ACGTACTCCCTCCATCTAGGT 59.148 52.381 0.00 0.00 39.02 3.08
2242 5212 2.660670 ACGTACTCCCTCCATCTAGG 57.339 55.000 0.00 0.00 39.47 3.02
2243 5213 4.354893 AGTACGTACTCCCTCCATCTAG 57.645 50.000 22.45 0.00 0.00 2.43
2244 5214 6.445451 AATAGTACGTACTCCCTCCATCTA 57.555 41.667 30.53 10.52 37.73 1.98
2245 5215 4.997545 ATAGTACGTACTCCCTCCATCT 57.002 45.455 30.53 6.75 37.73 2.90
2246 5216 6.000219 TGTAATAGTACGTACTCCCTCCATC 59.000 44.000 30.53 14.23 37.73 3.51
2247 5217 5.945310 TGTAATAGTACGTACTCCCTCCAT 58.055 41.667 30.53 15.19 37.73 3.41
2248 5218 5.372343 TGTAATAGTACGTACTCCCTCCA 57.628 43.478 30.53 18.28 37.73 3.86
2249 5219 6.890979 ATTGTAATAGTACGTACTCCCTCC 57.109 41.667 30.53 16.15 37.73 4.30
2250 5220 7.513968 CGTATTGTAATAGTACGTACTCCCTC 58.486 42.308 30.53 19.09 39.34 4.30
2251 5221 7.426929 CGTATTGTAATAGTACGTACTCCCT 57.573 40.000 30.53 18.04 39.34 4.20
2282 5252 8.585881 ACTTGTATCGCACCAAGTATATCTATT 58.414 33.333 10.42 0.00 46.97 1.73
2294 5264 4.082136 TGTGTATACACTTGTATCGCACCA 60.082 41.667 30.69 8.41 46.55 4.17
2400 5391 7.719193 TGTTTTCAAGAATACAGACTGATCCAA 59.281 33.333 10.08 0.00 30.71 3.53
2433 5424 3.467374 TGTTTGTCTTCCAAAATGCCC 57.533 42.857 0.00 0.00 44.36 5.36
2457 5449 1.571460 CAGAGTTTGCACCACGAGC 59.429 57.895 0.00 0.00 0.00 5.03
2461 5453 1.903404 CCCCCAGAGTTTGCACCAC 60.903 63.158 0.00 0.00 0.00 4.16
2473 5465 1.766461 CAGGCCCTAGTACCCCCAG 60.766 68.421 0.00 0.00 0.00 4.45
2474 5466 2.371043 CAGGCCCTAGTACCCCCA 59.629 66.667 0.00 0.00 0.00 4.96
2491 5487 4.159135 AGAAGAAATGTTCATGGTGGATGC 59.841 41.667 0.00 0.00 31.32 3.91
2584 5580 4.202050 CCAAAACCCTGCTGAGTTATATGC 60.202 45.833 0.00 0.00 0.00 3.14
2597 5593 0.593128 CAACGAGCTCCAAAACCCTG 59.407 55.000 8.47 0.00 0.00 4.45
2613 5609 0.185175 AACTGGTCCCCCTGAACAAC 59.815 55.000 0.00 0.00 41.09 3.32
2619 5615 4.410400 GGCGAACTGGTCCCCCTG 62.410 72.222 0.00 0.00 35.86 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.