Multiple sequence alignment - TraesCS7D01G323300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G323300 chr7D 100.000 3821 0 0 1 3821 413099863 413103683 0.000000e+00 7057.0
1 TraesCS7D01G323300 chr7B 92.861 3516 184 27 361 3821 427372797 427376300 0.000000e+00 5040.0
2 TraesCS7D01G323300 chr7B 98.305 59 1 0 313 371 427360780 427360838 1.880000e-18 104.0
3 TraesCS7D01G323300 chr7A 95.392 1606 74 0 1001 2606 474518625 474520230 0.000000e+00 2556.0
4 TraesCS7D01G323300 chr7A 94.368 728 28 5 2593 3308 474520391 474521117 0.000000e+00 1105.0
5 TraesCS7D01G323300 chr7A 94.828 522 23 2 3301 3821 474522661 474523179 0.000000e+00 811.0
6 TraesCS7D01G323300 chr7A 89.474 380 25 5 337 701 474514877 474515256 2.080000e-127 466.0
7 TraesCS7D01G323300 chr7A 87.261 157 12 5 752 901 474518414 474518569 5.070000e-39 172.0
8 TraesCS7D01G323300 chr7A 100.000 32 0 0 304 335 474509693 474509724 4.120000e-05 60.2
9 TraesCS7D01G323300 chr5D 97.720 307 6 1 1 306 506138610 506138304 9.400000e-146 527.0
10 TraesCS7D01G323300 chr5D 98.020 303 6 0 1 303 525274121 525273819 9.400000e-146 527.0
11 TraesCS7D01G323300 chr3D 98.020 303 6 0 1 303 508257887 508258189 9.400000e-146 527.0
12 TraesCS7D01G323300 chr3D 97.030 303 9 0 1 303 581810601 581810903 9.470000e-141 510.0
13 TraesCS7D01G323300 chr2D 97.419 310 7 1 1 309 29766963 29766654 9.400000e-146 527.0
14 TraesCS7D01G323300 chr6A 94.872 312 16 0 1 312 233336279 233335968 4.440000e-134 488.0
15 TraesCS7D01G323300 chr6A 87.692 195 24 0 1173 1367 585512494 585512300 1.070000e-55 228.0
16 TraesCS7D01G323300 chr6A 93.548 124 8 0 2152 2275 585500901 585500778 6.520000e-43 185.0
17 TraesCS7D01G323300 chr6A 85.455 110 16 0 2045 2154 585505899 585505790 8.670000e-22 115.0
18 TraesCS7D01G323300 chr6A 95.652 69 3 0 2356 2424 585500414 585500346 1.120000e-20 111.0
19 TraesCS7D01G323300 chr6A 93.846 65 4 0 990 1054 585513054 585512990 8.740000e-17 99.0
20 TraesCS7D01G323300 chr6A 94.915 59 3 0 1716 1774 585509935 585509877 4.060000e-15 93.5
21 TraesCS7D01G323300 chr6A 86.486 74 9 1 1909 1981 585507729 585507656 3.160000e-11 80.5
22 TraesCS7D01G323300 chr3A 95.066 304 15 0 1 304 668410855 668411158 2.670000e-131 479.0
23 TraesCS7D01G323300 chr5B 94.098 305 18 0 1 305 277750977 277751281 7.480000e-127 464.0
24 TraesCS7D01G323300 chr5B 93.443 305 20 0 1 305 369630198 369630502 1.620000e-123 453.0
25 TraesCS7D01G323300 chr6D 87.692 195 24 0 1173 1367 437339994 437339800 1.070000e-55 228.0
26 TraesCS7D01G323300 chr6D 94.118 85 5 0 2273 2357 437327885 437327801 3.100000e-26 130.0
27 TraesCS7D01G323300 chr6D 85.455 110 16 0 2045 2154 437332899 437332790 8.670000e-22 115.0
28 TraesCS7D01G323300 chr6D 95.652 69 3 0 2356 2424 437327685 437327617 1.120000e-20 111.0
29 TraesCS7D01G323300 chr6D 93.846 65 4 0 990 1054 437340556 437340492 8.740000e-17 99.0
30 TraesCS7D01G323300 chr6D 94.915 59 3 0 1716 1774 437336991 437336933 4.060000e-15 93.5
31 TraesCS7D01G323300 chr6D 86.486 74 9 1 1909 1981 437334794 437334721 3.160000e-11 80.5
32 TraesCS7D01G323300 chr6B 87.179 195 25 0 1173 1367 662105730 662105536 4.970000e-54 222.0
33 TraesCS7D01G323300 chr6B 92.742 124 9 0 2152 2275 662094444 662094321 3.030000e-41 180.0
34 TraesCS7D01G323300 chr6B 95.294 85 4 0 2273 2357 662094178 662094094 6.660000e-28 135.0
35 TraesCS7D01G323300 chr6B 94.203 69 4 0 2356 2424 662093955 662093887 5.220000e-19 106.0
36 TraesCS7D01G323300 chr6B 95.385 65 3 0 990 1054 662106292 662106228 1.880000e-18 104.0
37 TraesCS7D01G323300 chr6B 94.915 59 3 0 1716 1774 662103154 662103096 4.060000e-15 93.5
38 TraesCS7D01G323300 chr2B 92.742 124 9 0 2152 2275 116163678 116163801 3.030000e-41 180.0
39 TraesCS7D01G323300 chr2B 91.935 124 10 0 2152 2275 49319889 49319766 1.410000e-39 174.0
40 TraesCS7D01G323300 chr2B 91.935 124 10 0 2152 2275 484450556 484450433 1.410000e-39 174.0
41 TraesCS7D01G323300 chr2B 95.294 85 4 0 2273 2357 49319623 49319539 6.660000e-28 135.0
42 TraesCS7D01G323300 chr2B 96.341 82 3 0 2273 2354 116163944 116164025 6.660000e-28 135.0
43 TraesCS7D01G323300 chr2B 93.827 81 5 0 2273 2353 484450290 484450210 5.180000e-24 122.0
44 TraesCS7D01G323300 chr2B 94.203 69 4 0 2356 2424 49316806 49316738 5.220000e-19 106.0
45 TraesCS7D01G323300 chr2B 93.056 72 5 0 2353 2424 116164164 116164235 5.220000e-19 106.0
46 TraesCS7D01G323300 chr2B 94.203 69 4 0 2356 2424 484450067 484449999 5.220000e-19 106.0
47 TraesCS7D01G323300 chr2B 93.220 59 4 0 1716 1774 48047699 48047757 1.890000e-13 87.9
48 TraesCS7D01G323300 chr4B 91.129 124 11 0 2152 2275 623661391 623661514 6.560000e-38 169.0
49 TraesCS7D01G323300 chr4B 96.296 81 3 0 2273 2353 623661657 623661737 2.390000e-27 134.0
50 TraesCS7D01G323300 chr4B 93.056 72 5 0 2353 2424 623661877 623661948 5.220000e-19 106.0
51 TraesCS7D01G323300 chr4B 83.962 106 10 3 789 894 166706092 166705994 1.130000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G323300 chr7D 413099863 413103683 3820 False 7057 7057 100.0000 1 3821 1 chr7D.!!$F1 3820
1 TraesCS7D01G323300 chr7B 427372797 427376300 3503 False 5040 5040 92.8610 361 3821 1 chr7B.!!$F2 3460
2 TraesCS7D01G323300 chr7A 474514877 474523179 8302 False 1022 2556 92.2646 337 3821 5 chr7A.!!$F2 3484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 699 0.036294 AAACCTAGGCTTCTCACCGC 60.036 55.0 9.30 0.0 0.00 5.68 F
1660 4816 0.107459 GCATCTCCAAGACCCTGTCC 60.107 60.0 0.00 0.0 32.18 4.02 F
2494 5650 0.036483 TCGCCTTGTTGAGCATGCTA 60.036 50.0 22.74 2.3 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 4944 0.439985 CAACTTGCACAGATCCGTCG 59.560 55.000 0.0 0.0 0.0 5.12 R
2606 5762 1.078426 GTATTCTGCTGTGCCCCGT 60.078 57.895 0.0 0.0 0.0 5.28 R
3729 8627 2.169561 GTGGAAAACCTTCTGCCCAAAA 59.830 45.455 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.939201 ATATATGCTGATACTGTTATCTGTGC 57.061 34.615 0.00 0.00 36.49 4.57
41 42 4.470334 TGCTGATACTGTTATCTGTGCA 57.530 40.909 0.00 0.00 36.49 4.57
42 43 4.183865 TGCTGATACTGTTATCTGTGCAC 58.816 43.478 10.75 10.75 36.49 4.57
43 44 4.081476 TGCTGATACTGTTATCTGTGCACT 60.081 41.667 19.41 0.00 36.49 4.40
44 45 4.269603 GCTGATACTGTTATCTGTGCACTG 59.730 45.833 19.41 18.10 36.49 3.66
45 46 5.405935 TGATACTGTTATCTGTGCACTGT 57.594 39.130 19.41 10.65 35.90 3.55
46 47 5.793817 TGATACTGTTATCTGTGCACTGTT 58.206 37.500 19.41 14.85 35.90 3.16
47 48 5.639082 TGATACTGTTATCTGTGCACTGTTG 59.361 40.000 19.41 5.93 35.90 3.33
48 49 3.808728 ACTGTTATCTGTGCACTGTTGT 58.191 40.909 19.41 10.61 0.00 3.32
49 50 4.199310 ACTGTTATCTGTGCACTGTTGTT 58.801 39.130 19.41 7.31 0.00 2.83
50 51 4.640201 ACTGTTATCTGTGCACTGTTGTTT 59.360 37.500 19.41 5.05 0.00 2.83
51 52 5.125417 ACTGTTATCTGTGCACTGTTGTTTT 59.875 36.000 19.41 3.46 0.00 2.43
52 53 5.339177 TGTTATCTGTGCACTGTTGTTTTG 58.661 37.500 19.41 0.00 0.00 2.44
53 54 2.276472 TCTGTGCACTGTTGTTTTGC 57.724 45.000 19.41 0.00 36.76 3.68
54 55 1.818060 TCTGTGCACTGTTGTTTTGCT 59.182 42.857 19.41 0.00 37.16 3.91
55 56 1.921887 CTGTGCACTGTTGTTTTGCTG 59.078 47.619 19.41 0.00 37.16 4.41
56 57 1.543358 TGTGCACTGTTGTTTTGCTGA 59.457 42.857 19.41 0.00 37.16 4.26
57 58 2.029560 TGTGCACTGTTGTTTTGCTGAA 60.030 40.909 19.41 0.00 37.16 3.02
58 59 2.992543 GTGCACTGTTGTTTTGCTGAAA 59.007 40.909 10.32 0.00 37.16 2.69
59 60 3.618150 GTGCACTGTTGTTTTGCTGAAAT 59.382 39.130 10.32 0.00 37.16 2.17
60 61 3.617706 TGCACTGTTGTTTTGCTGAAATG 59.382 39.130 0.00 0.00 37.16 2.32
61 62 3.864583 GCACTGTTGTTTTGCTGAAATGA 59.135 39.130 0.00 0.00 33.26 2.57
62 63 4.508861 GCACTGTTGTTTTGCTGAAATGAT 59.491 37.500 0.00 0.00 33.26 2.45
63 64 5.557514 GCACTGTTGTTTTGCTGAAATGATG 60.558 40.000 0.00 0.00 33.26 3.07
64 65 5.521010 CACTGTTGTTTTGCTGAAATGATGT 59.479 36.000 0.00 0.00 0.00 3.06
65 66 6.696583 CACTGTTGTTTTGCTGAAATGATGTA 59.303 34.615 0.00 0.00 0.00 2.29
66 67 7.222417 CACTGTTGTTTTGCTGAAATGATGTAA 59.778 33.333 0.00 0.00 0.00 2.41
67 68 7.927629 ACTGTTGTTTTGCTGAAATGATGTAAT 59.072 29.630 0.00 0.00 0.00 1.89
68 69 8.659925 TGTTGTTTTGCTGAAATGATGTAATT 57.340 26.923 0.00 0.00 0.00 1.40
69 70 9.755804 TGTTGTTTTGCTGAAATGATGTAATTA 57.244 25.926 0.00 0.00 0.00 1.40
71 72 9.755804 TTGTTTTGCTGAAATGATGTAATTACA 57.244 25.926 20.14 20.14 40.98 2.41
72 73 9.409312 TGTTTTGCTGAAATGATGTAATTACAG 57.591 29.630 22.03 8.33 39.92 2.74
73 74 8.863049 GTTTTGCTGAAATGATGTAATTACAGG 58.137 33.333 22.03 7.15 39.92 4.00
74 75 6.135290 TGCTGAAATGATGTAATTACAGGC 57.865 37.500 22.03 16.59 39.92 4.85
75 76 5.651576 TGCTGAAATGATGTAATTACAGGCA 59.348 36.000 22.03 20.83 39.92 4.75
76 77 6.152492 TGCTGAAATGATGTAATTACAGGCAA 59.848 34.615 22.03 9.06 39.92 4.52
77 78 7.035004 GCTGAAATGATGTAATTACAGGCAAA 58.965 34.615 22.03 7.49 39.92 3.68
78 79 7.545265 GCTGAAATGATGTAATTACAGGCAAAA 59.455 33.333 22.03 9.86 39.92 2.44
79 80 9.590451 CTGAAATGATGTAATTACAGGCAAAAT 57.410 29.630 22.03 12.83 39.92 1.82
80 81 9.368674 TGAAATGATGTAATTACAGGCAAAATG 57.631 29.630 22.03 0.00 39.92 2.32
81 82 7.775397 AATGATGTAATTACAGGCAAAATGC 57.225 32.000 22.03 0.00 39.92 3.56
82 83 6.528537 TGATGTAATTACAGGCAAAATGCT 57.471 33.333 22.03 2.88 39.72 3.79
83 84 6.331845 TGATGTAATTACAGGCAAAATGCTG 58.668 36.000 22.03 1.94 39.72 4.41
84 85 5.720371 TGTAATTACAGGCAAAATGCTGT 57.280 34.783 14.35 7.32 44.28 4.40
85 86 5.708948 TGTAATTACAGGCAAAATGCTGTC 58.291 37.500 14.35 0.00 44.28 3.51
86 87 4.870123 AATTACAGGCAAAATGCTGTCA 57.130 36.364 2.00 0.00 44.28 3.58
87 88 3.921119 TTACAGGCAAAATGCTGTCAG 57.079 42.857 2.00 0.00 44.28 3.51
88 89 1.696063 ACAGGCAAAATGCTGTCAGT 58.304 45.000 0.93 0.00 44.28 3.41
89 90 2.034124 ACAGGCAAAATGCTGTCAGTT 58.966 42.857 0.93 0.00 44.28 3.16
90 91 2.431782 ACAGGCAAAATGCTGTCAGTTT 59.568 40.909 0.93 0.00 44.28 2.66
91 92 3.118665 ACAGGCAAAATGCTGTCAGTTTT 60.119 39.130 0.93 0.00 44.28 2.43
92 93 3.872771 CAGGCAAAATGCTGTCAGTTTTT 59.127 39.130 0.93 5.88 44.28 1.94
117 118 9.993454 TTTCCTAGATATGATCTCTCATTGTTG 57.007 33.333 0.00 0.00 42.23 3.33
118 119 7.609960 TCCTAGATATGATCTCTCATTGTTGC 58.390 38.462 0.00 0.00 42.23 4.17
119 120 7.454066 TCCTAGATATGATCTCTCATTGTTGCT 59.546 37.037 0.00 0.00 42.23 3.91
120 121 8.095792 CCTAGATATGATCTCTCATTGTTGCTT 58.904 37.037 0.00 0.00 42.23 3.91
126 127 6.558009 TGATCTCTCATTGTTGCTTATTTGC 58.442 36.000 0.00 0.00 0.00 3.68
127 128 5.314923 TCTCTCATTGTTGCTTATTTGCC 57.685 39.130 0.00 0.00 0.00 4.52
128 129 4.766373 TCTCTCATTGTTGCTTATTTGCCA 59.234 37.500 0.00 0.00 0.00 4.92
129 130 4.808558 TCTCATTGTTGCTTATTTGCCAC 58.191 39.130 0.00 0.00 0.00 5.01
130 131 4.523943 TCTCATTGTTGCTTATTTGCCACT 59.476 37.500 0.00 0.00 31.02 4.00
131 132 4.558178 TCATTGTTGCTTATTTGCCACTG 58.442 39.130 0.00 0.00 31.02 3.66
132 133 4.280425 TCATTGTTGCTTATTTGCCACTGA 59.720 37.500 0.00 0.00 31.02 3.41
133 134 3.921119 TGTTGCTTATTTGCCACTGAG 57.079 42.857 0.00 0.00 31.02 3.35
134 135 2.557924 TGTTGCTTATTTGCCACTGAGG 59.442 45.455 0.00 0.00 41.84 3.86
135 136 1.838112 TGCTTATTTGCCACTGAGGG 58.162 50.000 0.00 0.00 38.09 4.30
144 145 3.116091 CCACTGAGGGCAAACAAGT 57.884 52.632 0.00 0.00 0.00 3.16
145 146 0.954452 CCACTGAGGGCAAACAAGTC 59.046 55.000 0.00 0.00 0.00 3.01
146 147 1.679139 CACTGAGGGCAAACAAGTCA 58.321 50.000 0.00 0.00 0.00 3.41
147 148 2.233271 CACTGAGGGCAAACAAGTCAT 58.767 47.619 0.00 0.00 0.00 3.06
148 149 2.624838 CACTGAGGGCAAACAAGTCATT 59.375 45.455 0.00 0.00 0.00 2.57
149 150 3.068590 CACTGAGGGCAAACAAGTCATTT 59.931 43.478 0.00 0.00 0.00 2.32
150 151 3.706086 ACTGAGGGCAAACAAGTCATTTT 59.294 39.130 0.00 0.00 0.00 1.82
151 152 4.053295 CTGAGGGCAAACAAGTCATTTTG 58.947 43.478 0.00 0.00 36.06 2.44
152 153 3.181467 TGAGGGCAAACAAGTCATTTTGG 60.181 43.478 0.00 0.00 33.97 3.28
158 159 5.860641 GCAAACAAGTCATTTTGGCATATG 58.139 37.500 0.00 0.00 33.97 1.78
159 160 5.638657 GCAAACAAGTCATTTTGGCATATGA 59.361 36.000 6.97 8.28 33.97 2.15
160 161 6.147492 GCAAACAAGTCATTTTGGCATATGAA 59.853 34.615 6.97 0.00 33.97 2.57
161 162 7.307870 GCAAACAAGTCATTTTGGCATATGAAA 60.308 33.333 6.97 0.00 33.97 2.69
162 163 8.557864 CAAACAAGTCATTTTGGCATATGAAAA 58.442 29.630 6.97 5.86 32.94 2.29
163 164 7.656707 ACAAGTCATTTTGGCATATGAAAAC 57.343 32.000 6.97 4.22 32.94 2.43
164 165 7.444299 ACAAGTCATTTTGGCATATGAAAACT 58.556 30.769 6.97 5.99 32.94 2.66
165 166 7.385752 ACAAGTCATTTTGGCATATGAAAACTG 59.614 33.333 6.97 10.32 32.94 3.16
166 167 5.870978 AGTCATTTTGGCATATGAAAACTGC 59.129 36.000 6.97 7.21 32.94 4.40
167 168 4.863689 TCATTTTGGCATATGAAAACTGCG 59.136 37.500 6.97 0.00 36.76 5.18
168 169 4.511617 TTTTGGCATATGAAAACTGCGA 57.488 36.364 6.97 0.00 36.76 5.10
169 170 3.763097 TTGGCATATGAAAACTGCGAG 57.237 42.857 6.97 0.00 36.76 5.03
170 171 2.016318 TGGCATATGAAAACTGCGAGG 58.984 47.619 6.97 0.00 36.76 4.63
171 172 2.017049 GGCATATGAAAACTGCGAGGT 58.983 47.619 6.97 0.00 36.76 3.85
172 173 3.202906 GGCATATGAAAACTGCGAGGTA 58.797 45.455 6.97 0.00 36.76 3.08
173 174 3.625764 GGCATATGAAAACTGCGAGGTAA 59.374 43.478 6.97 0.00 36.76 2.85
174 175 4.495844 GGCATATGAAAACTGCGAGGTAAC 60.496 45.833 6.97 0.00 36.76 2.50
175 176 4.094294 GCATATGAAAACTGCGAGGTAACA 59.906 41.667 6.97 0.00 41.41 2.41
176 177 5.220854 GCATATGAAAACTGCGAGGTAACAT 60.221 40.000 6.97 0.00 41.41 2.71
177 178 6.677920 GCATATGAAAACTGCGAGGTAACATT 60.678 38.462 6.97 0.00 41.41 2.71
178 179 4.481930 TGAAAACTGCGAGGTAACATTG 57.518 40.909 0.00 0.00 41.41 2.82
179 180 3.880490 TGAAAACTGCGAGGTAACATTGT 59.120 39.130 0.00 0.00 41.41 2.71
180 181 4.336993 TGAAAACTGCGAGGTAACATTGTT 59.663 37.500 7.30 7.30 41.41 2.83
181 182 4.483476 AAACTGCGAGGTAACATTGTTC 57.517 40.909 5.07 0.00 41.41 3.18
182 183 3.402628 ACTGCGAGGTAACATTGTTCT 57.597 42.857 5.07 0.00 41.41 3.01
183 184 4.530710 ACTGCGAGGTAACATTGTTCTA 57.469 40.909 5.07 0.00 41.41 2.10
184 185 4.890088 ACTGCGAGGTAACATTGTTCTAA 58.110 39.130 5.07 0.00 41.41 2.10
185 186 4.689345 ACTGCGAGGTAACATTGTTCTAAC 59.311 41.667 5.07 0.00 41.41 2.34
186 187 4.633175 TGCGAGGTAACATTGTTCTAACA 58.367 39.130 5.07 0.00 41.41 2.41
187 188 4.688879 TGCGAGGTAACATTGTTCTAACAG 59.311 41.667 5.07 0.00 38.83 3.16
188 189 4.435651 GCGAGGTAACATTGTTCTAACAGC 60.436 45.833 5.07 3.12 38.83 4.40
189 190 4.092968 CGAGGTAACATTGTTCTAACAGCC 59.907 45.833 5.07 0.00 38.83 4.85
190 191 4.980573 AGGTAACATTGTTCTAACAGCCA 58.019 39.130 5.07 0.00 38.83 4.75
191 192 5.003804 AGGTAACATTGTTCTAACAGCCAG 58.996 41.667 5.07 0.00 38.83 4.85
192 193 4.760204 GGTAACATTGTTCTAACAGCCAGT 59.240 41.667 5.07 0.00 40.50 4.00
193 194 4.836125 AACATTGTTCTAACAGCCAGTG 57.164 40.909 0.00 0.00 40.50 3.66
194 195 3.149196 ACATTGTTCTAACAGCCAGTGG 58.851 45.455 4.20 4.20 40.50 4.00
205 206 3.799753 CCAGTGGCATACGAGCAC 58.200 61.111 0.00 0.00 35.83 4.40
206 207 1.219124 CCAGTGGCATACGAGCACT 59.781 57.895 0.00 0.00 35.83 4.40
207 208 0.459899 CCAGTGGCATACGAGCACTA 59.540 55.000 0.00 0.00 35.83 2.74
208 209 1.536922 CCAGTGGCATACGAGCACTAG 60.537 57.143 0.00 0.00 35.83 2.57
209 210 1.405463 CAGTGGCATACGAGCACTAGA 59.595 52.381 0.00 0.00 35.83 2.43
210 211 2.100197 AGTGGCATACGAGCACTAGAA 58.900 47.619 0.00 0.00 35.83 2.10
211 212 2.695666 AGTGGCATACGAGCACTAGAAT 59.304 45.455 0.00 0.00 35.83 2.40
212 213 3.133003 AGTGGCATACGAGCACTAGAATT 59.867 43.478 0.00 0.00 35.83 2.17
213 214 3.491267 GTGGCATACGAGCACTAGAATTC 59.509 47.826 0.00 0.00 35.83 2.17
214 215 2.726760 GGCATACGAGCACTAGAATTCG 59.273 50.000 0.00 4.91 38.88 3.34
215 216 3.372954 GCATACGAGCACTAGAATTCGT 58.627 45.455 18.50 18.50 46.63 3.85
216 217 3.797256 GCATACGAGCACTAGAATTCGTT 59.203 43.478 19.26 9.36 42.99 3.85
217 218 4.267928 GCATACGAGCACTAGAATTCGTTT 59.732 41.667 19.26 12.28 42.99 3.60
218 219 5.718246 CATACGAGCACTAGAATTCGTTTG 58.282 41.667 19.26 17.62 42.99 2.93
219 220 3.650139 ACGAGCACTAGAATTCGTTTGT 58.350 40.909 12.10 0.00 42.99 2.83
220 221 4.056050 ACGAGCACTAGAATTCGTTTGTT 58.944 39.130 12.10 0.00 42.99 2.83
221 222 5.224888 ACGAGCACTAGAATTCGTTTGTTA 58.775 37.500 12.10 0.00 42.99 2.41
222 223 5.118203 ACGAGCACTAGAATTCGTTTGTTAC 59.882 40.000 12.10 0.00 42.99 2.50
223 224 5.345202 CGAGCACTAGAATTCGTTTGTTACT 59.655 40.000 0.00 0.00 0.00 2.24
224 225 6.467723 AGCACTAGAATTCGTTTGTTACTG 57.532 37.500 0.00 0.00 0.00 2.74
225 226 5.408604 AGCACTAGAATTCGTTTGTTACTGG 59.591 40.000 0.00 0.00 0.00 4.00
226 227 5.178809 GCACTAGAATTCGTTTGTTACTGGT 59.821 40.000 0.00 0.00 0.00 4.00
227 228 6.366877 GCACTAGAATTCGTTTGTTACTGGTA 59.633 38.462 0.00 0.00 0.00 3.25
228 229 7.064253 GCACTAGAATTCGTTTGTTACTGGTAT 59.936 37.037 0.00 0.00 0.00 2.73
229 230 9.577110 CACTAGAATTCGTTTGTTACTGGTATA 57.423 33.333 0.00 0.00 0.00 1.47
233 234 9.314321 AGAATTCGTTTGTTACTGGTATATGAG 57.686 33.333 0.00 0.00 0.00 2.90
234 235 6.897259 TTCGTTTGTTACTGGTATATGAGC 57.103 37.500 0.00 0.00 0.00 4.26
235 236 5.968254 TCGTTTGTTACTGGTATATGAGCA 58.032 37.500 0.00 0.00 0.00 4.26
236 237 5.808540 TCGTTTGTTACTGGTATATGAGCAC 59.191 40.000 0.00 0.00 0.00 4.40
237 238 5.810587 CGTTTGTTACTGGTATATGAGCACT 59.189 40.000 0.00 0.00 0.00 4.40
238 239 6.237835 CGTTTGTTACTGGTATATGAGCACTG 60.238 42.308 0.00 0.00 0.00 3.66
239 240 6.538945 TTGTTACTGGTATATGAGCACTGA 57.461 37.500 0.00 0.00 0.00 3.41
240 241 6.538945 TGTTACTGGTATATGAGCACTGAA 57.461 37.500 0.00 0.00 0.00 3.02
241 242 6.573434 TGTTACTGGTATATGAGCACTGAAG 58.427 40.000 0.00 0.00 0.00 3.02
242 243 4.065321 ACTGGTATATGAGCACTGAAGC 57.935 45.455 0.00 0.00 0.00 3.86
244 245 4.163078 ACTGGTATATGAGCACTGAAGCTT 59.837 41.667 0.00 0.00 46.75 3.74
245 246 5.102953 TGGTATATGAGCACTGAAGCTTT 57.897 39.130 0.00 0.00 46.75 3.51
246 247 4.877823 TGGTATATGAGCACTGAAGCTTTG 59.122 41.667 0.00 0.00 46.75 2.77
247 248 4.878397 GGTATATGAGCACTGAAGCTTTGT 59.122 41.667 0.00 0.00 46.75 2.83
248 249 5.355350 GGTATATGAGCACTGAAGCTTTGTT 59.645 40.000 0.00 0.00 46.75 2.83
249 250 3.911661 ATGAGCACTGAAGCTTTGTTC 57.088 42.857 0.00 3.36 46.75 3.18
250 251 1.599071 TGAGCACTGAAGCTTTGTTCG 59.401 47.619 0.00 0.00 46.75 3.95
251 252 1.867233 GAGCACTGAAGCTTTGTTCGA 59.133 47.619 0.00 0.00 46.75 3.71
252 253 2.481952 GAGCACTGAAGCTTTGTTCGAT 59.518 45.455 0.00 0.00 46.75 3.59
253 254 2.225019 AGCACTGAAGCTTTGTTCGATG 59.775 45.455 0.00 0.00 43.70 3.84
254 255 2.666619 GCACTGAAGCTTTGTTCGATGG 60.667 50.000 0.00 0.00 0.00 3.51
255 256 1.537202 ACTGAAGCTTTGTTCGATGGC 59.463 47.619 0.00 0.00 0.00 4.40
256 257 1.536766 CTGAAGCTTTGTTCGATGGCA 59.463 47.619 0.00 0.00 0.00 4.92
257 258 1.952990 TGAAGCTTTGTTCGATGGCAA 59.047 42.857 0.00 0.00 0.00 4.52
258 259 2.360483 TGAAGCTTTGTTCGATGGCAAA 59.640 40.909 0.00 9.07 34.05 3.68
259 260 3.005684 TGAAGCTTTGTTCGATGGCAAAT 59.994 39.130 0.00 0.00 34.60 2.32
260 261 2.950433 AGCTTTGTTCGATGGCAAATG 58.050 42.857 9.63 6.69 34.60 2.32
261 262 2.557924 AGCTTTGTTCGATGGCAAATGA 59.442 40.909 9.63 0.00 34.60 2.57
262 263 2.919229 GCTTTGTTCGATGGCAAATGAG 59.081 45.455 9.63 2.49 34.60 2.90
263 264 2.634982 TTGTTCGATGGCAAATGAGC 57.365 45.000 0.00 0.00 0.00 4.26
264 265 1.532523 TGTTCGATGGCAAATGAGCA 58.467 45.000 0.00 0.00 35.83 4.26
265 266 1.469703 TGTTCGATGGCAAATGAGCAG 59.530 47.619 0.00 0.00 35.83 4.24
266 267 1.470098 GTTCGATGGCAAATGAGCAGT 59.530 47.619 0.00 0.00 35.83 4.40
267 268 1.825090 TCGATGGCAAATGAGCAGTT 58.175 45.000 0.00 0.00 35.83 3.16
268 269 1.469703 TCGATGGCAAATGAGCAGTTG 59.530 47.619 6.32 6.32 39.18 3.16
269 270 1.469703 CGATGGCAAATGAGCAGTTGA 59.530 47.619 14.03 0.00 38.53 3.18
270 271 2.098607 CGATGGCAAATGAGCAGTTGAT 59.901 45.455 14.03 0.41 38.53 2.57
271 272 3.444916 GATGGCAAATGAGCAGTTGATG 58.555 45.455 14.03 0.00 38.53 3.07
283 284 3.808116 CAGTTGATGCTTGTCTCAGTG 57.192 47.619 0.00 0.00 0.00 3.66
284 285 2.483106 CAGTTGATGCTTGTCTCAGTGG 59.517 50.000 0.00 0.00 0.00 4.00
285 286 2.105477 AGTTGATGCTTGTCTCAGTGGT 59.895 45.455 0.00 0.00 0.00 4.16
286 287 3.324846 AGTTGATGCTTGTCTCAGTGGTA 59.675 43.478 0.00 0.00 0.00 3.25
287 288 4.019860 AGTTGATGCTTGTCTCAGTGGTAT 60.020 41.667 0.00 0.00 0.00 2.73
288 289 5.187772 AGTTGATGCTTGTCTCAGTGGTATA 59.812 40.000 0.00 0.00 0.00 1.47
289 290 5.268118 TGATGCTTGTCTCAGTGGTATAG 57.732 43.478 0.00 0.00 0.00 1.31
290 291 4.956075 TGATGCTTGTCTCAGTGGTATAGA 59.044 41.667 0.00 0.00 0.00 1.98
291 292 5.422012 TGATGCTTGTCTCAGTGGTATAGAA 59.578 40.000 0.00 0.00 0.00 2.10
292 293 5.330455 TGCTTGTCTCAGTGGTATAGAAG 57.670 43.478 0.00 0.00 0.00 2.85
293 294 4.772624 TGCTTGTCTCAGTGGTATAGAAGT 59.227 41.667 0.00 0.00 0.00 3.01
294 295 5.105716 TGCTTGTCTCAGTGGTATAGAAGTC 60.106 44.000 0.00 0.00 0.00 3.01
295 296 5.105716 GCTTGTCTCAGTGGTATAGAAGTCA 60.106 44.000 0.00 0.00 0.00 3.41
296 297 6.406400 GCTTGTCTCAGTGGTATAGAAGTCAT 60.406 42.308 0.00 0.00 0.00 3.06
297 298 7.482169 TTGTCTCAGTGGTATAGAAGTCATT 57.518 36.000 0.00 0.00 0.00 2.57
298 299 7.482169 TGTCTCAGTGGTATAGAAGTCATTT 57.518 36.000 0.00 0.00 0.00 2.32
299 300 7.907389 TGTCTCAGTGGTATAGAAGTCATTTT 58.093 34.615 0.00 0.00 0.00 1.82
300 301 8.035394 TGTCTCAGTGGTATAGAAGTCATTTTC 58.965 37.037 0.00 0.00 0.00 2.29
301 302 8.254508 GTCTCAGTGGTATAGAAGTCATTTTCT 58.745 37.037 0.00 0.00 40.39 2.52
302 303 8.470805 TCTCAGTGGTATAGAAGTCATTTTCTC 58.529 37.037 0.00 0.00 38.35 2.87
303 304 8.134202 TCAGTGGTATAGAAGTCATTTTCTCA 57.866 34.615 0.00 0.00 38.35 3.27
304 305 8.593679 TCAGTGGTATAGAAGTCATTTTCTCAA 58.406 33.333 0.00 0.00 38.35 3.02
305 306 9.219603 CAGTGGTATAGAAGTCATTTTCTCAAA 57.780 33.333 0.00 0.00 38.35 2.69
306 307 9.965902 AGTGGTATAGAAGTCATTTTCTCAAAT 57.034 29.630 0.00 0.00 38.35 2.32
314 315 9.844257 AGAAGTCATTTTCTCAAATATCTAGGG 57.156 33.333 0.00 0.00 31.97 3.53
315 316 9.620259 GAAGTCATTTTCTCAAATATCTAGGGT 57.380 33.333 0.00 0.00 30.90 4.34
316 317 9.981460 AAGTCATTTTCTCAAATATCTAGGGTT 57.019 29.630 0.00 0.00 30.90 4.11
323 324 9.502035 TTTCTCAAATATCTAGGGTTAGGAAGA 57.498 33.333 0.00 0.00 0.00 2.87
324 325 8.713708 TCTCAAATATCTAGGGTTAGGAAGAG 57.286 38.462 0.00 0.00 0.00 2.85
325 326 7.730784 TCTCAAATATCTAGGGTTAGGAAGAGG 59.269 40.741 0.00 0.00 0.00 3.69
326 327 7.601942 TCAAATATCTAGGGTTAGGAAGAGGA 58.398 38.462 0.00 0.00 0.00 3.71
327 328 8.071854 TCAAATATCTAGGGTTAGGAAGAGGAA 58.928 37.037 0.00 0.00 0.00 3.36
328 329 8.371699 CAAATATCTAGGGTTAGGAAGAGGAAG 58.628 40.741 0.00 0.00 0.00 3.46
329 330 4.969136 TCTAGGGTTAGGAAGAGGAAGT 57.031 45.455 0.00 0.00 0.00 3.01
330 331 5.286760 TCTAGGGTTAGGAAGAGGAAGTT 57.713 43.478 0.00 0.00 0.00 2.66
331 332 6.413129 TCTAGGGTTAGGAAGAGGAAGTTA 57.587 41.667 0.00 0.00 0.00 2.24
332 333 6.808357 TCTAGGGTTAGGAAGAGGAAGTTAA 58.192 40.000 0.00 0.00 0.00 2.01
333 334 7.428335 TCTAGGGTTAGGAAGAGGAAGTTAAT 58.572 38.462 0.00 0.00 0.00 1.40
334 335 6.971932 AGGGTTAGGAAGAGGAAGTTAATT 57.028 37.500 0.00 0.00 0.00 1.40
335 336 6.722328 AGGGTTAGGAAGAGGAAGTTAATTG 58.278 40.000 0.00 0.00 0.00 2.32
496 501 1.227380 CGATTGCCTTCCTCCTCGG 60.227 63.158 0.00 0.00 0.00 4.63
596 607 3.522731 CTCGCGGTCTCCTCCCTG 61.523 72.222 6.13 0.00 0.00 4.45
671 688 3.014604 CGCGAGGATCTAAAACCTAGG 57.985 52.381 7.41 7.41 36.57 3.02
682 699 0.036294 AAACCTAGGCTTCTCACCGC 60.036 55.000 9.30 0.00 0.00 5.68
706 729 2.291801 TTGCGGGGTCGGATAACCA 61.292 57.895 0.00 0.00 41.40 3.67
722 745 6.530534 CGGATAACCAAACTCTTATATAGCCG 59.469 42.308 0.00 0.00 35.59 5.52
768 3892 1.082117 CGTAACCCTACGCAAGGCTG 61.082 60.000 0.00 0.00 44.03 4.85
827 3957 3.015383 GGCCATCCAAGCCCCTTA 58.985 61.111 0.00 0.00 45.16 2.69
837 3967 3.553363 GCCCCTTACCCGCCGTAT 61.553 66.667 0.00 0.00 0.00 3.06
902 4040 1.883275 CGACCTCATCGCTAGGAGATT 59.117 52.381 0.88 0.00 45.52 2.40
951 4103 4.478371 CCGCCAGCAGCATCCTGA 62.478 66.667 0.00 0.00 44.04 3.86
952 4104 2.895865 CGCCAGCAGCATCCTGAG 60.896 66.667 0.00 0.00 44.04 3.35
953 4105 2.271497 GCCAGCAGCATCCTGAGT 59.729 61.111 0.00 0.00 41.77 3.41
957 4109 0.252479 CAGCAGCATCCTGAGTTCCT 59.748 55.000 0.00 0.00 41.77 3.36
1097 4249 4.451435 CGTCAGCATAATCAAGAGCATCAT 59.549 41.667 0.00 0.00 37.82 2.45
1166 4318 1.892819 CTGATCCTGCACACCTCGGT 61.893 60.000 0.00 0.00 0.00 4.69
1185 4337 3.146066 GGTGCTAAAGGAACATGTCACA 58.854 45.455 0.00 0.00 0.00 3.58
1287 4443 4.735985 TGATGAAATTCGTGGCAAATCAG 58.264 39.130 0.00 0.00 0.00 2.90
1311 4467 0.391263 AGAACGACGAATCCAAGGGC 60.391 55.000 0.00 0.00 0.00 5.19
1382 4538 3.453717 TGTGAGATGATTCTGGAGGAAGG 59.546 47.826 0.00 0.00 37.36 3.46
1395 4551 3.009473 TGGAGGAAGGGAAAGTTCATCAG 59.991 47.826 0.60 0.00 36.63 2.90
1437 4593 4.891992 ATATCCCTTGTATCTGGTTCCG 57.108 45.455 0.00 0.00 0.00 4.30
1529 4685 1.673808 GGGGATACGGCGACTTCTGT 61.674 60.000 16.62 0.00 37.60 3.41
1530 4686 0.527817 GGGATACGGCGACTTCTGTG 60.528 60.000 16.62 0.00 37.60 3.66
1537 4693 1.887242 GCGACTTCTGTGTGGCACA 60.887 57.895 17.96 17.96 42.45 4.57
1660 4816 0.107459 GCATCTCCAAGACCCTGTCC 60.107 60.000 0.00 0.00 32.18 4.02
1788 4944 3.265791 AGACGAGATGCTGGAAATTCAC 58.734 45.455 0.00 0.00 0.00 3.18
1857 5013 2.023888 TGGGAAAAAGGTCAAGGTTCCA 60.024 45.455 3.38 0.00 39.65 3.53
2007 5163 1.000955 TCGGTTTCTGAGCTCAAGGAC 59.999 52.381 18.85 14.89 0.00 3.85
2016 5172 3.879295 CTGAGCTCAAGGACTTTGTGAAA 59.121 43.478 18.85 0.00 38.01 2.69
2028 5184 5.220989 GGACTTTGTGAAAAGGTTACACTCC 60.221 44.000 0.00 0.00 35.83 3.85
2148 5304 1.967066 CTGGAGGCGAAGGACTATGAT 59.033 52.381 0.00 0.00 0.00 2.45
2258 5414 1.374947 CTGGGTTGCCGAGGAAGAA 59.625 57.895 0.00 0.00 0.00 2.52
2292 5448 1.517832 GCGGGAGATACTGCACAGT 59.482 57.895 8.57 8.57 45.02 3.55
2319 5475 0.675083 TTGAGCACATGCCCTTGTTG 59.325 50.000 0.00 0.00 43.38 3.33
2331 5487 3.153919 GCCCTTGTTGTACAATCTGGAA 58.846 45.455 12.26 0.00 37.48 3.53
2439 5595 5.397672 GGATCCTGATTCCCCTGATGATATG 60.398 48.000 3.84 0.00 0.00 1.78
2485 5641 3.309954 GCCTCTTAGTATTCGCCTTGTTG 59.690 47.826 0.00 0.00 0.00 3.33
2493 5649 0.890542 TTCGCCTTGTTGAGCATGCT 60.891 50.000 22.92 22.92 0.00 3.79
2494 5650 0.036483 TCGCCTTGTTGAGCATGCTA 60.036 50.000 22.74 2.30 0.00 3.49
2498 5654 2.033049 GCCTTGTTGAGCATGCTATGAG 59.967 50.000 22.74 13.68 0.00 2.90
2510 5666 0.761187 GCTATGAGGTCTGGATGGCA 59.239 55.000 0.00 0.00 0.00 4.92
2549 5705 1.106944 AAATTATTGCCGGGCCCTCG 61.107 55.000 22.43 11.14 0.00 4.63
2606 5762 4.019411 TGGTTCATCAGAATTGCTACCAGA 60.019 41.667 0.00 0.00 35.92 3.86
2781 6111 4.935205 GTCATCACTGGCAACACATTACTA 59.065 41.667 0.00 0.00 46.17 1.82
2872 6202 3.291584 TGTACAAAGCATCACAAACCCA 58.708 40.909 0.00 0.00 0.00 4.51
2943 6273 2.167075 GCCACTGGAAATGCTATTGCTT 59.833 45.455 0.00 0.00 40.48 3.91
3015 6354 6.491714 AATTGATAGCTCCTGTACAGACAT 57.508 37.500 24.68 9.41 34.24 3.06
3208 6548 6.072452 GCTAACTCCAAGAAACATGCTAAAGT 60.072 38.462 0.00 0.00 0.00 2.66
3358 8256 3.625313 TCAAGTGTCTGCTAGAGATCTCG 59.375 47.826 16.97 5.20 31.63 4.04
3429 8327 7.333528 TCTAAACAGCAATCAGTTTGTCTTT 57.666 32.000 0.00 0.00 38.33 2.52
3437 8335 7.113965 CAGCAATCAGTTTGTCTTTTGTATCAC 59.886 37.037 0.00 0.00 37.65 3.06
3619 8517 3.937706 ACAATGCTTCCGAAGAATCTGAG 59.062 43.478 12.54 1.64 0.00 3.35
3726 8624 5.622448 TCGTAAACGATGTTATGCTCGATAC 59.378 40.000 0.14 1.08 44.22 2.24
3729 8627 6.844696 AAACGATGTTATGCTCGATACAAT 57.155 33.333 0.00 0.00 38.24 2.71
3733 8631 7.125755 ACGATGTTATGCTCGATACAATTTTG 58.874 34.615 0.00 0.00 38.24 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.534496 TGCACAGATAACAGTATCAGCATATAT 58.466 33.333 0.00 0.00 38.95 0.86
16 17 7.814587 GTGCACAGATAACAGTATCAGCATATA 59.185 37.037 13.17 0.00 40.34 0.86
17 18 6.648310 GTGCACAGATAACAGTATCAGCATAT 59.352 38.462 13.17 0.00 40.34 1.78
18 19 5.985530 GTGCACAGATAACAGTATCAGCATA 59.014 40.000 13.17 0.00 40.34 3.14
19 20 4.813161 GTGCACAGATAACAGTATCAGCAT 59.187 41.667 13.17 0.00 40.34 3.79
20 21 4.081476 AGTGCACAGATAACAGTATCAGCA 60.081 41.667 21.04 0.00 38.95 4.41
21 22 4.269603 CAGTGCACAGATAACAGTATCAGC 59.730 45.833 21.04 0.00 38.95 4.26
22 23 5.414360 ACAGTGCACAGATAACAGTATCAG 58.586 41.667 21.04 0.00 38.95 2.90
23 24 5.405935 ACAGTGCACAGATAACAGTATCA 57.594 39.130 21.04 0.00 38.95 2.15
24 25 5.639506 ACAACAGTGCACAGATAACAGTATC 59.360 40.000 21.04 0.00 37.04 2.24
25 26 5.551233 ACAACAGTGCACAGATAACAGTAT 58.449 37.500 21.04 0.00 0.00 2.12
26 27 4.956085 ACAACAGTGCACAGATAACAGTA 58.044 39.130 21.04 0.00 0.00 2.74
27 28 3.808728 ACAACAGTGCACAGATAACAGT 58.191 40.909 21.04 3.41 0.00 3.55
28 29 4.818534 AACAACAGTGCACAGATAACAG 57.181 40.909 21.04 2.77 0.00 3.16
29 30 5.339177 CAAAACAACAGTGCACAGATAACA 58.661 37.500 21.04 0.00 0.00 2.41
30 31 4.207019 GCAAAACAACAGTGCACAGATAAC 59.793 41.667 21.04 0.00 38.19 1.89
31 32 4.097741 AGCAAAACAACAGTGCACAGATAA 59.902 37.500 21.04 0.00 40.83 1.75
32 33 3.631686 AGCAAAACAACAGTGCACAGATA 59.368 39.130 21.04 0.00 40.83 1.98
33 34 2.428171 AGCAAAACAACAGTGCACAGAT 59.572 40.909 21.04 2.17 40.83 2.90
34 35 1.818060 AGCAAAACAACAGTGCACAGA 59.182 42.857 21.04 0.00 40.83 3.41
35 36 1.921887 CAGCAAAACAACAGTGCACAG 59.078 47.619 21.04 14.44 40.83 3.66
36 37 1.543358 TCAGCAAAACAACAGTGCACA 59.457 42.857 21.04 0.00 40.83 4.57
37 38 2.276472 TCAGCAAAACAACAGTGCAC 57.724 45.000 9.40 9.40 40.83 4.57
38 39 3.309961 TTTCAGCAAAACAACAGTGCA 57.690 38.095 0.00 0.00 40.83 4.57
39 40 3.864583 TCATTTCAGCAAAACAACAGTGC 59.135 39.130 0.00 0.00 38.59 4.40
40 41 5.521010 ACATCATTTCAGCAAAACAACAGTG 59.479 36.000 0.00 0.00 0.00 3.66
41 42 5.663456 ACATCATTTCAGCAAAACAACAGT 58.337 33.333 0.00 0.00 0.00 3.55
42 43 7.697352 TTACATCATTTCAGCAAAACAACAG 57.303 32.000 0.00 0.00 0.00 3.16
43 44 8.659925 AATTACATCATTTCAGCAAAACAACA 57.340 26.923 0.00 0.00 0.00 3.33
45 46 9.755804 TGTAATTACATCATTTCAGCAAAACAA 57.244 25.926 14.35 0.00 0.00 2.83
46 47 9.409312 CTGTAATTACATCATTTCAGCAAAACA 57.591 29.630 18.35 0.00 35.36 2.83
47 48 8.863049 CCTGTAATTACATCATTTCAGCAAAAC 58.137 33.333 18.35 0.00 35.36 2.43
48 49 7.545265 GCCTGTAATTACATCATTTCAGCAAAA 59.455 33.333 18.35 0.00 35.36 2.44
49 50 7.035004 GCCTGTAATTACATCATTTCAGCAAA 58.965 34.615 18.35 0.00 35.36 3.68
50 51 6.152492 TGCCTGTAATTACATCATTTCAGCAA 59.848 34.615 18.35 0.00 35.36 3.91
51 52 5.651576 TGCCTGTAATTACATCATTTCAGCA 59.348 36.000 18.35 13.26 35.36 4.41
52 53 6.135290 TGCCTGTAATTACATCATTTCAGC 57.865 37.500 18.35 11.27 35.36 4.26
53 54 8.984891 TTTTGCCTGTAATTACATCATTTCAG 57.015 30.769 18.35 4.72 35.36 3.02
54 55 9.368674 CATTTTGCCTGTAATTACATCATTTCA 57.631 29.630 18.35 7.80 35.36 2.69
55 56 8.330302 GCATTTTGCCTGTAATTACATCATTTC 58.670 33.333 18.35 5.62 37.42 2.17
56 57 8.042515 AGCATTTTGCCTGTAATTACATCATTT 58.957 29.630 18.35 5.72 46.52 2.32
57 58 7.493320 CAGCATTTTGCCTGTAATTACATCATT 59.507 33.333 18.35 6.00 46.52 2.57
58 59 6.982141 CAGCATTTTGCCTGTAATTACATCAT 59.018 34.615 18.35 3.48 46.52 2.45
59 60 6.071447 ACAGCATTTTGCCTGTAATTACATCA 60.071 34.615 18.35 15.53 46.52 3.07
60 61 6.332630 ACAGCATTTTGCCTGTAATTACATC 58.667 36.000 18.35 13.36 46.52 3.06
61 62 6.071447 TGACAGCATTTTGCCTGTAATTACAT 60.071 34.615 18.35 0.00 46.52 2.29
62 63 5.242615 TGACAGCATTTTGCCTGTAATTACA 59.757 36.000 17.16 17.16 46.52 2.41
63 64 5.708948 TGACAGCATTTTGCCTGTAATTAC 58.291 37.500 8.75 8.75 46.52 1.89
64 65 5.476599 ACTGACAGCATTTTGCCTGTAATTA 59.523 36.000 1.25 0.00 46.52 1.40
65 66 4.281688 ACTGACAGCATTTTGCCTGTAATT 59.718 37.500 1.25 0.00 46.52 1.40
66 67 3.828451 ACTGACAGCATTTTGCCTGTAAT 59.172 39.130 1.25 0.00 46.52 1.89
67 68 3.221771 ACTGACAGCATTTTGCCTGTAA 58.778 40.909 1.25 0.00 46.52 2.41
68 69 2.862541 ACTGACAGCATTTTGCCTGTA 58.137 42.857 1.25 0.00 46.52 2.74
69 70 1.696063 ACTGACAGCATTTTGCCTGT 58.304 45.000 1.25 0.00 46.52 4.00
70 71 2.806608 AACTGACAGCATTTTGCCTG 57.193 45.000 1.25 0.00 46.52 4.85
71 72 3.825143 AAAACTGACAGCATTTTGCCT 57.175 38.095 1.25 0.00 46.52 4.75
91 92 9.993454 CAACAATGAGAGATCATATCTAGGAAA 57.007 33.333 0.00 0.00 40.38 3.13
92 93 8.093307 GCAACAATGAGAGATCATATCTAGGAA 58.907 37.037 0.00 0.00 40.38 3.36
93 94 7.454066 AGCAACAATGAGAGATCATATCTAGGA 59.546 37.037 0.00 0.00 40.38 2.94
94 95 7.613585 AGCAACAATGAGAGATCATATCTAGG 58.386 38.462 0.00 0.00 40.38 3.02
100 101 8.347771 GCAAATAAGCAACAATGAGAGATCATA 58.652 33.333 0.00 0.00 0.00 2.15
101 102 7.201145 GCAAATAAGCAACAATGAGAGATCAT 58.799 34.615 0.00 0.00 0.00 2.45
102 103 6.405065 GGCAAATAAGCAACAATGAGAGATCA 60.405 38.462 0.00 0.00 35.83 2.92
103 104 5.975939 GGCAAATAAGCAACAATGAGAGATC 59.024 40.000 0.00 0.00 35.83 2.75
104 105 5.419788 TGGCAAATAAGCAACAATGAGAGAT 59.580 36.000 0.00 0.00 35.83 2.75
105 106 4.766373 TGGCAAATAAGCAACAATGAGAGA 59.234 37.500 0.00 0.00 35.83 3.10
106 107 4.860907 GTGGCAAATAAGCAACAATGAGAG 59.139 41.667 0.00 0.00 38.35 3.20
107 108 4.523943 AGTGGCAAATAAGCAACAATGAGA 59.476 37.500 0.00 0.00 41.01 3.27
108 109 4.624024 CAGTGGCAAATAAGCAACAATGAG 59.376 41.667 0.00 0.00 41.01 2.90
109 110 4.280425 TCAGTGGCAAATAAGCAACAATGA 59.720 37.500 0.00 0.00 41.01 2.57
110 111 4.558178 TCAGTGGCAAATAAGCAACAATG 58.442 39.130 0.00 0.00 41.01 2.82
111 112 4.322198 CCTCAGTGGCAAATAAGCAACAAT 60.322 41.667 0.00 0.00 41.01 2.71
112 113 3.005684 CCTCAGTGGCAAATAAGCAACAA 59.994 43.478 0.00 0.00 41.01 2.83
113 114 2.557924 CCTCAGTGGCAAATAAGCAACA 59.442 45.455 0.00 0.00 41.01 3.33
114 115 2.094545 CCCTCAGTGGCAAATAAGCAAC 60.095 50.000 0.00 0.00 38.77 4.17
115 116 2.170166 CCCTCAGTGGCAAATAAGCAA 58.830 47.619 0.00 0.00 35.83 3.91
116 117 1.838112 CCCTCAGTGGCAAATAAGCA 58.162 50.000 0.00 0.00 35.83 3.91
126 127 0.954452 GACTTGTTTGCCCTCAGTGG 59.046 55.000 0.00 0.00 0.00 4.00
127 128 1.679139 TGACTTGTTTGCCCTCAGTG 58.321 50.000 0.00 0.00 0.00 3.66
128 129 2.664402 ATGACTTGTTTGCCCTCAGT 57.336 45.000 0.00 0.00 0.00 3.41
129 130 4.053295 CAAAATGACTTGTTTGCCCTCAG 58.947 43.478 0.00 0.00 0.00 3.35
130 131 3.181467 CCAAAATGACTTGTTTGCCCTCA 60.181 43.478 0.00 0.00 34.13 3.86
131 132 3.392882 CCAAAATGACTTGTTTGCCCTC 58.607 45.455 0.00 0.00 34.13 4.30
132 133 2.485302 GCCAAAATGACTTGTTTGCCCT 60.485 45.455 0.00 0.00 34.13 5.19
133 134 1.872952 GCCAAAATGACTTGTTTGCCC 59.127 47.619 0.00 0.00 34.13 5.36
134 135 2.559440 TGCCAAAATGACTTGTTTGCC 58.441 42.857 0.00 0.00 34.13 4.52
135 136 5.638657 TCATATGCCAAAATGACTTGTTTGC 59.361 36.000 0.00 0.00 34.13 3.68
136 137 7.655236 TTCATATGCCAAAATGACTTGTTTG 57.345 32.000 0.00 0.00 31.99 2.93
137 138 8.558700 GTTTTCATATGCCAAAATGACTTGTTT 58.441 29.630 0.00 0.00 31.99 2.83
138 139 7.933033 AGTTTTCATATGCCAAAATGACTTGTT 59.067 29.630 0.00 0.00 31.99 2.83
139 140 7.385752 CAGTTTTCATATGCCAAAATGACTTGT 59.614 33.333 16.50 0.00 31.99 3.16
140 141 7.622672 GCAGTTTTCATATGCCAAAATGACTTG 60.623 37.037 21.86 10.93 31.99 3.16
141 142 6.369615 GCAGTTTTCATATGCCAAAATGACTT 59.630 34.615 21.86 2.29 31.99 3.01
142 143 5.870978 GCAGTTTTCATATGCCAAAATGACT 59.129 36.000 21.86 8.44 31.99 3.41
143 144 5.220265 CGCAGTTTTCATATGCCAAAATGAC 60.220 40.000 21.86 15.16 36.60 3.06
144 145 4.863689 CGCAGTTTTCATATGCCAAAATGA 59.136 37.500 21.86 0.00 36.60 2.57
145 146 4.863689 TCGCAGTTTTCATATGCCAAAATG 59.136 37.500 16.89 16.89 36.60 2.32
146 147 5.070770 TCGCAGTTTTCATATGCCAAAAT 57.929 34.783 0.00 0.00 36.60 1.82
147 148 4.484236 CTCGCAGTTTTCATATGCCAAAA 58.516 39.130 0.00 0.00 36.60 2.44
148 149 3.119531 CCTCGCAGTTTTCATATGCCAAA 60.120 43.478 0.00 0.00 36.60 3.28
149 150 2.423185 CCTCGCAGTTTTCATATGCCAA 59.577 45.455 0.00 0.00 36.60 4.52
150 151 2.016318 CCTCGCAGTTTTCATATGCCA 58.984 47.619 0.00 0.00 36.60 4.92
151 152 2.017049 ACCTCGCAGTTTTCATATGCC 58.983 47.619 0.00 0.00 36.60 4.40
152 153 4.094294 TGTTACCTCGCAGTTTTCATATGC 59.906 41.667 0.00 0.00 36.60 3.14
153 154 5.794687 TGTTACCTCGCAGTTTTCATATG 57.205 39.130 0.00 0.00 0.00 1.78
154 155 6.374333 ACAATGTTACCTCGCAGTTTTCATAT 59.626 34.615 0.00 0.00 0.00 1.78
155 156 5.703592 ACAATGTTACCTCGCAGTTTTCATA 59.296 36.000 0.00 0.00 0.00 2.15
156 157 4.518970 ACAATGTTACCTCGCAGTTTTCAT 59.481 37.500 0.00 0.00 0.00 2.57
157 158 3.880490 ACAATGTTACCTCGCAGTTTTCA 59.120 39.130 0.00 0.00 0.00 2.69
158 159 4.483476 ACAATGTTACCTCGCAGTTTTC 57.517 40.909 0.00 0.00 0.00 2.29
159 160 4.578928 AGAACAATGTTACCTCGCAGTTTT 59.421 37.500 0.00 0.00 0.00 2.43
160 161 4.134563 AGAACAATGTTACCTCGCAGTTT 58.865 39.130 0.00 0.00 0.00 2.66
161 162 3.740115 AGAACAATGTTACCTCGCAGTT 58.260 40.909 0.00 0.00 0.00 3.16
162 163 3.402628 AGAACAATGTTACCTCGCAGT 57.597 42.857 0.00 0.00 0.00 4.40
163 164 4.688879 TGTTAGAACAATGTTACCTCGCAG 59.311 41.667 0.00 0.00 35.67 5.18
164 165 4.633175 TGTTAGAACAATGTTACCTCGCA 58.367 39.130 0.00 0.00 35.67 5.10
165 166 4.435651 GCTGTTAGAACAATGTTACCTCGC 60.436 45.833 0.00 0.00 38.66 5.03
166 167 4.092968 GGCTGTTAGAACAATGTTACCTCG 59.907 45.833 0.00 0.00 38.66 4.63
167 168 5.001232 TGGCTGTTAGAACAATGTTACCTC 58.999 41.667 0.00 0.00 38.66 3.85
168 169 4.980573 TGGCTGTTAGAACAATGTTACCT 58.019 39.130 0.00 0.00 38.66 3.08
169 170 4.760204 ACTGGCTGTTAGAACAATGTTACC 59.240 41.667 0.00 0.00 38.66 2.85
170 171 5.334879 CCACTGGCTGTTAGAACAATGTTAC 60.335 44.000 0.00 0.00 38.66 2.50
171 172 4.759693 CCACTGGCTGTTAGAACAATGTTA 59.240 41.667 0.00 0.00 38.66 2.41
172 173 3.569701 CCACTGGCTGTTAGAACAATGTT 59.430 43.478 0.00 0.00 38.66 2.71
173 174 3.149196 CCACTGGCTGTTAGAACAATGT 58.851 45.455 0.00 0.00 38.66 2.71
174 175 2.095059 GCCACTGGCTGTTAGAACAATG 60.095 50.000 13.28 0.00 46.69 2.82
175 176 2.162681 GCCACTGGCTGTTAGAACAAT 58.837 47.619 13.28 0.00 46.69 2.71
176 177 1.604604 GCCACTGGCTGTTAGAACAA 58.395 50.000 13.28 0.00 46.69 2.83
177 178 3.322514 GCCACTGGCTGTTAGAACA 57.677 52.632 13.28 0.00 46.69 3.18
188 189 0.459899 TAGTGCTCGTATGCCACTGG 59.540 55.000 14.59 0.00 0.00 4.00
189 190 1.405463 TCTAGTGCTCGTATGCCACTG 59.595 52.381 14.59 7.80 0.00 3.66
190 191 1.763968 TCTAGTGCTCGTATGCCACT 58.236 50.000 11.27 11.27 0.00 4.00
191 192 2.579207 TTCTAGTGCTCGTATGCCAC 57.421 50.000 0.00 0.00 0.00 5.01
192 193 3.717707 GAATTCTAGTGCTCGTATGCCA 58.282 45.455 0.00 0.00 0.00 4.92
193 194 2.726760 CGAATTCTAGTGCTCGTATGCC 59.273 50.000 3.52 0.00 0.00 4.40
194 195 3.372954 ACGAATTCTAGTGCTCGTATGC 58.627 45.455 11.99 0.00 42.36 3.14
195 196 5.288712 ACAAACGAATTCTAGTGCTCGTATG 59.711 40.000 13.38 0.36 43.29 2.39
196 197 5.408356 ACAAACGAATTCTAGTGCTCGTAT 58.592 37.500 13.38 5.01 43.29 3.06
197 198 4.801891 ACAAACGAATTCTAGTGCTCGTA 58.198 39.130 13.38 0.00 43.29 3.43
198 199 3.650139 ACAAACGAATTCTAGTGCTCGT 58.350 40.909 3.52 9.05 45.84 4.18
199 200 4.647291 AACAAACGAATTCTAGTGCTCG 57.353 40.909 3.52 8.04 37.33 5.03
200 201 6.401153 CCAGTAACAAACGAATTCTAGTGCTC 60.401 42.308 3.52 0.00 0.00 4.26
201 202 5.408604 CCAGTAACAAACGAATTCTAGTGCT 59.591 40.000 3.52 0.00 0.00 4.40
202 203 5.178809 ACCAGTAACAAACGAATTCTAGTGC 59.821 40.000 3.52 0.00 0.00 4.40
203 204 6.780706 ACCAGTAACAAACGAATTCTAGTG 57.219 37.500 3.52 1.54 0.00 2.74
207 208 9.314321 CTCATATACCAGTAACAAACGAATTCT 57.686 33.333 3.52 0.00 0.00 2.40
208 209 8.062448 GCTCATATACCAGTAACAAACGAATTC 58.938 37.037 0.00 0.00 0.00 2.17
209 210 7.551262 TGCTCATATACCAGTAACAAACGAATT 59.449 33.333 0.00 0.00 0.00 2.17
210 211 7.011109 GTGCTCATATACCAGTAACAAACGAAT 59.989 37.037 0.00 0.00 0.00 3.34
211 212 6.311935 GTGCTCATATACCAGTAACAAACGAA 59.688 38.462 0.00 0.00 0.00 3.85
212 213 5.808540 GTGCTCATATACCAGTAACAAACGA 59.191 40.000 0.00 0.00 0.00 3.85
213 214 5.810587 AGTGCTCATATACCAGTAACAAACG 59.189 40.000 0.00 0.00 0.00 3.60
214 215 6.816640 TCAGTGCTCATATACCAGTAACAAAC 59.183 38.462 0.00 0.00 0.00 2.93
215 216 6.941857 TCAGTGCTCATATACCAGTAACAAA 58.058 36.000 0.00 0.00 0.00 2.83
216 217 6.538945 TCAGTGCTCATATACCAGTAACAA 57.461 37.500 0.00 0.00 0.00 2.83
217 218 6.538945 TTCAGTGCTCATATACCAGTAACA 57.461 37.500 0.00 0.00 0.00 2.41
218 219 5.463724 GCTTCAGTGCTCATATACCAGTAAC 59.536 44.000 0.00 0.00 0.00 2.50
219 220 5.363868 AGCTTCAGTGCTCATATACCAGTAA 59.636 40.000 0.00 0.00 39.34 2.24
220 221 4.895889 AGCTTCAGTGCTCATATACCAGTA 59.104 41.667 0.00 0.00 39.34 2.74
221 222 3.708631 AGCTTCAGTGCTCATATACCAGT 59.291 43.478 0.00 0.00 39.34 4.00
222 223 4.333913 AGCTTCAGTGCTCATATACCAG 57.666 45.455 0.00 0.00 39.34 4.00
223 224 4.760530 AAGCTTCAGTGCTCATATACCA 57.239 40.909 0.00 0.00 43.24 3.25
224 225 4.878397 ACAAAGCTTCAGTGCTCATATACC 59.122 41.667 0.00 0.00 43.24 2.73
225 226 6.428385 AACAAAGCTTCAGTGCTCATATAC 57.572 37.500 0.00 0.00 43.24 1.47
226 227 5.291858 CGAACAAAGCTTCAGTGCTCATATA 59.708 40.000 0.00 0.00 43.24 0.86
227 228 4.093998 CGAACAAAGCTTCAGTGCTCATAT 59.906 41.667 0.00 0.00 43.24 1.78
228 229 3.433274 CGAACAAAGCTTCAGTGCTCATA 59.567 43.478 0.00 0.00 43.24 2.15
229 230 2.225019 CGAACAAAGCTTCAGTGCTCAT 59.775 45.455 0.00 0.00 43.24 2.90
230 231 1.599071 CGAACAAAGCTTCAGTGCTCA 59.401 47.619 0.00 0.00 43.24 4.26
231 232 1.867233 TCGAACAAAGCTTCAGTGCTC 59.133 47.619 0.00 0.00 43.24 4.26
232 233 1.953559 TCGAACAAAGCTTCAGTGCT 58.046 45.000 0.00 0.00 46.40 4.40
233 234 2.578495 CATCGAACAAAGCTTCAGTGC 58.422 47.619 0.00 0.00 0.00 4.40
234 235 2.666619 GCCATCGAACAAAGCTTCAGTG 60.667 50.000 0.00 0.00 0.00 3.66
235 236 1.537202 GCCATCGAACAAAGCTTCAGT 59.463 47.619 0.00 0.00 0.00 3.41
236 237 1.536766 TGCCATCGAACAAAGCTTCAG 59.463 47.619 0.00 0.00 0.00 3.02
237 238 1.603456 TGCCATCGAACAAAGCTTCA 58.397 45.000 0.00 0.00 0.00 3.02
238 239 2.704725 TTGCCATCGAACAAAGCTTC 57.295 45.000 0.00 0.00 0.00 3.86
239 240 3.005684 TCATTTGCCATCGAACAAAGCTT 59.994 39.130 14.37 0.00 39.01 3.74
240 241 2.557924 TCATTTGCCATCGAACAAAGCT 59.442 40.909 14.37 0.00 39.01 3.74
241 242 2.919229 CTCATTTGCCATCGAACAAAGC 59.081 45.455 14.37 3.88 39.01 3.51
242 243 2.919229 GCTCATTTGCCATCGAACAAAG 59.081 45.455 14.37 8.71 39.01 2.77
243 244 2.295629 TGCTCATTTGCCATCGAACAAA 59.704 40.909 12.24 12.24 39.87 2.83
244 245 1.885233 TGCTCATTTGCCATCGAACAA 59.115 42.857 0.00 0.00 0.00 2.83
245 246 1.469703 CTGCTCATTTGCCATCGAACA 59.530 47.619 0.00 0.00 0.00 3.18
246 247 1.470098 ACTGCTCATTTGCCATCGAAC 59.530 47.619 0.00 0.00 0.00 3.95
247 248 1.825090 ACTGCTCATTTGCCATCGAA 58.175 45.000 0.00 0.00 0.00 3.71
248 249 1.469703 CAACTGCTCATTTGCCATCGA 59.530 47.619 0.00 0.00 0.00 3.59
249 250 1.469703 TCAACTGCTCATTTGCCATCG 59.530 47.619 0.00 0.00 0.00 3.84
250 251 3.444916 CATCAACTGCTCATTTGCCATC 58.555 45.455 0.00 0.00 0.00 3.51
251 252 3.520290 CATCAACTGCTCATTTGCCAT 57.480 42.857 0.00 0.00 0.00 4.40
263 264 2.483106 CCACTGAGACAAGCATCAACTG 59.517 50.000 0.00 0.00 0.00 3.16
264 265 2.105477 ACCACTGAGACAAGCATCAACT 59.895 45.455 0.00 0.00 0.00 3.16
265 266 2.498167 ACCACTGAGACAAGCATCAAC 58.502 47.619 0.00 0.00 0.00 3.18
266 267 2.936919 ACCACTGAGACAAGCATCAA 57.063 45.000 0.00 0.00 0.00 2.57
267 268 4.956075 TCTATACCACTGAGACAAGCATCA 59.044 41.667 0.00 0.00 0.00 3.07
268 269 5.521906 TCTATACCACTGAGACAAGCATC 57.478 43.478 0.00 0.00 0.00 3.91
269 270 5.423610 ACTTCTATACCACTGAGACAAGCAT 59.576 40.000 0.00 0.00 0.00 3.79
270 271 4.772624 ACTTCTATACCACTGAGACAAGCA 59.227 41.667 0.00 0.00 0.00 3.91
271 272 5.105716 TGACTTCTATACCACTGAGACAAGC 60.106 44.000 0.00 0.00 0.00 4.01
272 273 6.516739 TGACTTCTATACCACTGAGACAAG 57.483 41.667 0.00 0.00 0.00 3.16
273 274 7.482169 AATGACTTCTATACCACTGAGACAA 57.518 36.000 0.00 0.00 0.00 3.18
274 275 7.482169 AAATGACTTCTATACCACTGAGACA 57.518 36.000 0.00 0.00 0.00 3.41
275 276 8.254508 AGAAAATGACTTCTATACCACTGAGAC 58.745 37.037 0.00 0.00 33.81 3.36
276 277 8.367660 AGAAAATGACTTCTATACCACTGAGA 57.632 34.615 0.00 0.00 33.81 3.27
277 278 8.253810 TGAGAAAATGACTTCTATACCACTGAG 58.746 37.037 0.00 0.00 35.76 3.35
278 279 8.134202 TGAGAAAATGACTTCTATACCACTGA 57.866 34.615 0.00 0.00 35.76 3.41
279 280 8.777865 TTGAGAAAATGACTTCTATACCACTG 57.222 34.615 0.00 0.00 35.76 3.66
280 281 9.965902 ATTTGAGAAAATGACTTCTATACCACT 57.034 29.630 0.00 0.00 35.76 4.00
288 289 9.844257 CCCTAGATATTTGAGAAAATGACTTCT 57.156 33.333 0.00 0.00 38.39 2.85
289 290 9.620259 ACCCTAGATATTTGAGAAAATGACTTC 57.380 33.333 0.00 0.00 0.00 3.01
290 291 9.981460 AACCCTAGATATTTGAGAAAATGACTT 57.019 29.630 0.00 0.00 0.00 3.01
297 298 9.502035 TCTTCCTAACCCTAGATATTTGAGAAA 57.498 33.333 0.00 0.00 0.00 2.52
298 299 9.148879 CTCTTCCTAACCCTAGATATTTGAGAA 57.851 37.037 0.00 0.00 0.00 2.87
299 300 7.730784 CCTCTTCCTAACCCTAGATATTTGAGA 59.269 40.741 0.00 0.00 0.00 3.27
300 301 7.730784 TCCTCTTCCTAACCCTAGATATTTGAG 59.269 40.741 0.00 0.00 0.00 3.02
301 302 7.601942 TCCTCTTCCTAACCCTAGATATTTGA 58.398 38.462 0.00 0.00 0.00 2.69
302 303 7.857404 TCCTCTTCCTAACCCTAGATATTTG 57.143 40.000 0.00 0.00 0.00 2.32
303 304 8.074991 ACTTCCTCTTCCTAACCCTAGATATTT 58.925 37.037 0.00 0.00 0.00 1.40
304 305 7.606581 ACTTCCTCTTCCTAACCCTAGATATT 58.393 38.462 0.00 0.00 0.00 1.28
305 306 7.182017 ACTTCCTCTTCCTAACCCTAGATAT 57.818 40.000 0.00 0.00 0.00 1.63
306 307 6.609379 ACTTCCTCTTCCTAACCCTAGATA 57.391 41.667 0.00 0.00 0.00 1.98
307 308 5.490995 ACTTCCTCTTCCTAACCCTAGAT 57.509 43.478 0.00 0.00 0.00 1.98
308 309 4.969136 ACTTCCTCTTCCTAACCCTAGA 57.031 45.455 0.00 0.00 0.00 2.43
309 310 7.678207 ATTAACTTCCTCTTCCTAACCCTAG 57.322 40.000 0.00 0.00 0.00 3.02
310 311 7.460082 ACAATTAACTTCCTCTTCCTAACCCTA 59.540 37.037 0.00 0.00 0.00 3.53
311 312 6.274908 ACAATTAACTTCCTCTTCCTAACCCT 59.725 38.462 0.00 0.00 0.00 4.34
312 313 6.482524 ACAATTAACTTCCTCTTCCTAACCC 58.517 40.000 0.00 0.00 0.00 4.11
313 314 7.997773 AACAATTAACTTCCTCTTCCTAACC 57.002 36.000 0.00 0.00 0.00 2.85
327 328 9.662947 GGACACCAGTAAGTATAACAATTAACT 57.337 33.333 0.00 0.00 0.00 2.24
328 329 9.662947 AGGACACCAGTAAGTATAACAATTAAC 57.337 33.333 0.00 0.00 0.00 2.01
329 330 9.880157 GAGGACACCAGTAAGTATAACAATTAA 57.120 33.333 0.00 0.00 0.00 1.40
330 331 9.038072 TGAGGACACCAGTAAGTATAACAATTA 57.962 33.333 0.00 0.00 0.00 1.40
331 332 7.913789 TGAGGACACCAGTAAGTATAACAATT 58.086 34.615 0.00 0.00 0.00 2.32
332 333 7.490657 TGAGGACACCAGTAAGTATAACAAT 57.509 36.000 0.00 0.00 0.00 2.71
333 334 6.921486 TGAGGACACCAGTAAGTATAACAA 57.079 37.500 0.00 0.00 0.00 2.83
334 335 6.921486 TTGAGGACACCAGTAAGTATAACA 57.079 37.500 0.00 0.00 0.00 2.41
335 336 6.817140 CCTTTGAGGACACCAGTAAGTATAAC 59.183 42.308 0.00 0.00 37.67 1.89
346 347 1.761174 GGCTCCTTTGAGGACACCA 59.239 57.895 6.47 0.00 40.06 4.17
347 348 1.376037 CGGCTCCTTTGAGGACACC 60.376 63.158 0.00 0.00 40.06 4.16
596 607 3.118482 TGAAGAGGTTGATGGCAGAGATC 60.118 47.826 0.00 0.00 0.00 2.75
644 655 0.664761 TTAGATCCTCGCGGTTACGG 59.335 55.000 6.13 0.00 41.36 4.02
659 676 3.194968 CGGTGAGAAGCCTAGGTTTTAGA 59.805 47.826 12.62 0.00 0.00 2.10
671 688 1.731969 AACGTACGCGGTGAGAAGC 60.732 57.895 16.72 0.00 43.45 3.86
698 721 6.313164 GCGGCTATATAAGAGTTTGGTTATCC 59.687 42.308 0.00 0.00 0.00 2.59
706 729 3.057734 GCGTGCGGCTATATAAGAGTTT 58.942 45.455 0.00 0.00 39.11 2.66
736 3855 0.033306 GGTTACGAGAGGGAGAGGGT 60.033 60.000 0.00 0.00 0.00 4.34
784 3908 2.439701 CGGCGGAGGAGTGGAGTA 60.440 66.667 0.00 0.00 0.00 2.59
934 4086 4.478371 TCAGGATGCTGCTGGCGG 62.478 66.667 9.76 0.00 45.43 6.13
946 4098 1.602605 TCGCGTCAGGAACTCAGGA 60.603 57.895 5.77 0.00 34.60 3.86
947 4099 1.444553 GTCGCGTCAGGAACTCAGG 60.445 63.158 5.77 0.00 34.60 3.86
948 4100 1.797933 CGTCGCGTCAGGAACTCAG 60.798 63.158 5.77 0.00 34.60 3.35
949 4101 2.254350 CGTCGCGTCAGGAACTCA 59.746 61.111 5.77 0.00 34.60 3.41
950 4102 3.173240 GCGTCGCGTCAGGAACTC 61.173 66.667 5.77 0.00 34.60 3.01
951 4103 4.719369 GGCGTCGCGTCAGGAACT 62.719 66.667 11.75 0.00 43.88 3.01
983 4135 1.153168 ATTTGGCCCACTCGATCGG 60.153 57.895 16.41 8.65 0.00 4.18
1011 4163 1.079875 GCGCGTTATCGAGGTTTGGA 61.080 55.000 8.43 0.00 39.71 3.53
1097 4249 0.472471 GACCAGACACTTGTTCCCCA 59.528 55.000 0.00 0.00 0.00 4.96
1166 4318 4.318332 CTCTGTGACATGTTCCTTTAGCA 58.682 43.478 0.00 0.00 0.00 3.49
1185 4337 1.832167 GGAGAGGATCCGCAGCTCT 60.832 63.158 18.44 9.23 38.67 4.09
1287 4443 3.307242 CCTTGGATTCGTCGTTCTTGATC 59.693 47.826 0.00 0.00 0.00 2.92
1382 4538 3.569701 TGCCAACTTCTGATGAACTTTCC 59.430 43.478 0.00 0.00 0.00 3.13
1395 4551 5.757850 ATTCTCCGATTATTGCCAACTTC 57.242 39.130 0.00 0.00 0.00 3.01
1437 4593 6.521151 AAAGAAATGACATCCTCATCCAAC 57.479 37.500 0.00 0.00 38.82 3.77
1529 4685 0.824595 AGCTTCTGCAATGTGCCACA 60.825 50.000 0.00 0.00 44.23 4.17
1530 4686 1.167851 TAGCTTCTGCAATGTGCCAC 58.832 50.000 0.00 0.00 44.23 5.01
1537 4693 3.330110 AGCCTATGGATAGCTTCTGCAAT 59.670 43.478 0.00 0.00 42.74 3.56
1788 4944 0.439985 CAACTTGCACAGATCCGTCG 59.560 55.000 0.00 0.00 0.00 5.12
2007 5163 4.887655 AGGGAGTGTAACCTTTTCACAAAG 59.112 41.667 0.00 0.00 37.80 2.77
2016 5172 1.077663 TCCGGTAGGGAGTGTAACCTT 59.922 52.381 0.00 0.00 40.94 3.50
2028 5184 0.680061 GCCTGGTTATCTCCGGTAGG 59.320 60.000 0.00 0.00 39.46 3.18
2148 5304 6.207221 TCTCCTCAATGTACTTGTAACACGTA 59.793 38.462 0.00 0.00 36.20 3.57
2258 5414 0.460311 CCGCCTCAGGTAGTCGAAAT 59.540 55.000 0.00 0.00 0.00 2.17
2292 5448 1.477700 GGCATGTGCTCAAAGCCATAA 59.522 47.619 22.94 0.00 43.52 1.90
2319 5475 2.164422 GCCAGCCTTTTCCAGATTGTAC 59.836 50.000 0.00 0.00 0.00 2.90
2439 5595 3.486108 CGTATCCAGCAAAGACGTATGAC 59.514 47.826 0.00 0.00 0.00 3.06
2485 5641 1.690893 TCCAGACCTCATAGCATGCTC 59.309 52.381 26.57 8.23 0.00 4.26
2493 5649 3.321039 AGATTGCCATCCAGACCTCATA 58.679 45.455 0.00 0.00 0.00 2.15
2494 5650 2.133520 AGATTGCCATCCAGACCTCAT 58.866 47.619 0.00 0.00 0.00 2.90
2498 5654 4.090761 TCAATAGATTGCCATCCAGACC 57.909 45.455 0.00 0.00 37.68 3.85
2549 5705 5.066593 AGACACCTCTTTTCAAATCCAGAC 58.933 41.667 0.00 0.00 0.00 3.51
2598 5754 3.665675 CTGTGCCCCGTCTGGTAGC 62.666 68.421 0.00 0.00 34.14 3.58
2606 5762 1.078426 GTATTCTGCTGTGCCCCGT 60.078 57.895 0.00 0.00 0.00 5.28
2781 6111 3.217626 GCTGCTGGCTATAATTGGTCTT 58.782 45.455 0.00 0.00 38.06 3.01
2806 6136 6.373774 AGCAAAGACAACTAAATCATCCTCTG 59.626 38.462 0.00 0.00 0.00 3.35
3208 6548 3.146066 CTGTGGCTTGGTTTGCTAGTTA 58.854 45.455 0.00 0.00 0.00 2.24
3317 8215 3.035363 TGACAGTACAGACCAGGACAAA 58.965 45.455 0.00 0.00 0.00 2.83
3358 8256 6.831769 TCGAAGTGAATATTGCAAAGAACTC 58.168 36.000 1.71 0.00 0.00 3.01
3409 8307 5.723295 ACAAAAGACAAACTGATTGCTGTT 58.277 33.333 0.00 0.00 43.13 3.16
3429 8327 6.162777 TGTGAAGACGATGATTGTGATACAA 58.837 36.000 0.00 0.00 42.95 2.41
3437 8335 4.687948 AGTGACTTGTGAAGACGATGATTG 59.312 41.667 0.00 0.00 0.00 2.67
3619 8517 2.651071 AGCAGAAAGGCTTCTTGGC 58.349 52.632 0.00 2.54 42.71 4.52
3726 8624 3.814842 GGAAAACCTTCTGCCCAAAATTG 59.185 43.478 0.00 0.00 0.00 2.32
3729 8627 2.169561 GTGGAAAACCTTCTGCCCAAAA 59.830 45.455 0.00 0.00 0.00 2.44
3733 8631 2.351777 GGTGGAAAACCTTCTGCCC 58.648 57.895 0.00 0.00 46.55 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.