Multiple sequence alignment - TraesCS7D01G322900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G322900 chr7D 100.000 5979 0 0 1 5979 412874101 412880079 0.000000e+00 11042.0
1 TraesCS7D01G322900 chr7B 89.168 2825 150 55 807 3536 427292583 427295346 0.000000e+00 3378.0
2 TraesCS7D01G322900 chr7B 94.328 1622 66 11 3609 5220 427295361 427296966 0.000000e+00 2462.0
3 TraesCS7D01G322900 chr7B 87.173 382 35 8 2 379 427291389 427291760 7.160000e-114 422.0
4 TraesCS7D01G322900 chr7B 81.674 442 28 20 389 803 427291881 427292296 9.670000e-83 318.0
5 TraesCS7D01G322900 chr7B 81.493 335 29 11 5656 5979 427296998 427297310 1.660000e-60 244.0
6 TraesCS7D01G322900 chr7A 95.677 1758 66 8 2944 4693 474287811 474289566 0.000000e+00 2817.0
7 TraesCS7D01G322900 chr7A 89.322 1695 101 40 1291 2959 474285989 474287629 0.000000e+00 2054.0
8 TraesCS7D01G322900 chr7A 92.857 546 25 6 4688 5220 474289602 474290146 0.000000e+00 780.0
9 TraesCS7D01G322900 chr7A 88.071 394 16 15 926 1296 474285571 474285956 7.110000e-119 438.0
10 TraesCS7D01G322900 chr7A 87.021 339 26 7 5656 5979 474290176 474290511 3.400000e-97 366.0
11 TraesCS7D01G322900 chr7A 85.000 260 24 9 1 258 474284604 474284850 3.580000e-62 250.0
12 TraesCS7D01G322900 chr7A 91.429 175 15 0 5493 5667 709731066 709731240 2.150000e-59 241.0
13 TraesCS7D01G322900 chr7A 82.007 289 18 15 645 922 474285272 474285537 1.310000e-51 215.0
14 TraesCS7D01G322900 chr7A 85.211 142 8 6 475 611 474285068 474285201 3.760000e-27 134.0
15 TraesCS7D01G322900 chr7A 98.246 57 1 0 280 336 474284940 474284996 3.810000e-17 100.0
16 TraesCS7D01G322900 chr7A 97.297 37 1 0 419 455 716683706 716683742 5.000000e-06 63.9
17 TraesCS7D01G322900 chr3D 96.154 156 6 0 5219 5374 278069005 278068850 7.690000e-64 255.0
18 TraesCS7D01G322900 chr3D 96.129 155 6 0 5219 5373 329681758 329681912 2.770000e-63 254.0
19 TraesCS7D01G322900 chr3D 83.516 91 8 4 362 450 373805361 373805276 1.790000e-10 78.7
20 TraesCS7D01G322900 chr6D 96.129 155 6 0 5219 5373 324602407 324602561 2.770000e-63 254.0
21 TraesCS7D01G322900 chr6D 93.939 165 9 1 5210 5373 431000190 431000026 1.290000e-61 248.0
22 TraesCS7D01G322900 chr6D 92.857 168 12 0 5492 5659 431000015 431000182 1.660000e-60 244.0
23 TraesCS7D01G322900 chr6A 95.570 158 7 0 5216 5373 115317246 115317403 2.770000e-63 254.0
24 TraesCS7D01G322900 chr5D 96.129 155 6 0 5219 5373 42949560 42949714 2.770000e-63 254.0
25 TraesCS7D01G322900 chr5D 91.667 168 14 0 5493 5660 117350613 117350446 3.600000e-57 233.0
26 TraesCS7D01G322900 chr5D 94.872 39 2 0 435 473 445400591 445400629 1.800000e-05 62.1
27 TraesCS7D01G322900 chr4A 96.129 155 6 0 5219 5373 554788035 554787881 2.770000e-63 254.0
28 TraesCS7D01G322900 chr4A 96.875 96 3 0 5372 5467 554787964 554787869 1.720000e-35 161.0
29 TraesCS7D01G322900 chr1A 96.129 155 6 0 5219 5373 493207984 493208138 2.770000e-63 254.0
30 TraesCS7D01G322900 chr1A 94.012 167 10 0 5491 5657 586112411 586112577 2.770000e-63 254.0
31 TraesCS7D01G322900 chrUn 95.000 160 8 0 5215 5374 92777897 92777738 9.950000e-63 252.0
32 TraesCS7D01G322900 chr6B 92.442 172 13 0 5493 5664 118037253 118037082 4.630000e-61 246.0
33 TraesCS7D01G322900 chr6B 85.034 147 15 7 5372 5516 462125202 462125343 6.250000e-30 143.0
34 TraesCS7D01G322900 chr4D 93.333 165 11 0 5493 5657 93336684 93336848 1.660000e-60 244.0
35 TraesCS7D01G322900 chr1D 93.333 165 11 0 5493 5657 68439328 68439164 1.660000e-60 244.0
36 TraesCS7D01G322900 chr1D 95.098 102 5 0 5372 5473 20199430 20199329 1.720000e-35 161.0
37 TraesCS7D01G322900 chr1D 95.918 98 4 0 5372 5469 9218279 9218376 6.200000e-35 159.0
38 TraesCS7D01G322900 chr2D 90.909 176 15 1 5482 5657 637587900 637588074 1.000000e-57 235.0
39 TraesCS7D01G322900 chr2D 97.872 94 2 0 5372 5465 493085528 493085621 4.790000e-36 163.0
40 TraesCS7D01G322900 chr2D 87.597 129 9 7 5371 5495 582292771 582292896 6.250000e-30 143.0
41 TraesCS7D01G322900 chr2B 81.787 291 43 8 5372 5657 769077884 769078169 1.000000e-57 235.0
42 TraesCS7D01G322900 chr2B 95.050 101 5 0 5372 5472 134045840 134045740 6.200000e-35 159.0
43 TraesCS7D01G322900 chr2A 96.875 96 3 0 5372 5467 671941507 671941602 1.720000e-35 161.0
44 TraesCS7D01G322900 chr5B 85.075 67 7 3 389 455 149315665 149315728 1.390000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G322900 chr7D 412874101 412880079 5978 False 11042.000000 11042 100.0000 1 5979 1 chr7D.!!$F1 5978
1 TraesCS7D01G322900 chr7B 427291389 427297310 5921 False 1364.800000 3378 86.7672 2 5979 5 chr7B.!!$F1 5977
2 TraesCS7D01G322900 chr7A 474284604 474290511 5907 False 794.888889 2817 89.2680 1 5979 9 chr7A.!!$F3 5978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 866 0.035439 ATGGAAGGAACGTGCGGAAT 60.035 50.000 0.00 0.0 0.0 3.01 F
896 1477 0.179156 ACGTCGCGGTACACATAAGG 60.179 55.000 6.13 0.0 0.0 2.69 F
1691 2385 0.179034 CAATGCCTACTCCTGCTCCC 60.179 60.000 0.00 0.0 0.0 4.30 F
2883 3612 0.610785 GTTTCCCCTTTCCGCCATGA 60.611 55.000 0.00 0.0 0.0 3.07 F
3548 4480 1.191647 CAGTTACCGTTTCGTCTGCAC 59.808 52.381 0.00 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 2272 0.391528 CGAGCACATGGACATGGACA 60.392 55.000 15.94 0.00 42.91 4.02 R
2340 3048 1.399440 AGCGCGTATTCGTCTTAGACA 59.601 47.619 13.14 0.00 39.49 3.41 R
3191 4119 0.859232 CCAAGTCTCCAACACGAACG 59.141 55.000 0.00 0.00 0.00 3.95 R
4655 5590 1.693627 AGACCGAACACTGTGAGACT 58.306 50.000 15.86 3.36 0.00 3.24 R
5449 6439 1.275573 GCATATACTCCCTCCGTTCCC 59.724 57.143 0.00 0.00 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 6.314648 TGCATAGTGCTTCTGAGAATTTACAG 59.685 38.462 0.00 6.52 45.31 2.74
33 35 4.453819 AGTGCTTCTGAGAATTTACAGCAC 59.546 41.667 21.03 21.03 46.99 4.40
53 55 6.807720 CAGCACTGTAATTATGCAAATGTGAA 59.192 34.615 11.15 0.00 41.97 3.18
54 56 6.808212 AGCACTGTAATTATGCAAATGTGAAC 59.192 34.615 11.15 0.00 41.97 3.18
71 73 3.706373 CCGCTACTGGTGTGGGCT 61.706 66.667 0.00 0.00 0.00 5.19
99 112 4.735338 GTGTAAAGAAGTTTGTGAGCAAGC 59.265 41.667 0.00 0.00 35.82 4.01
106 119 1.069906 GTTTGTGAGCAAGCGGTGTAG 60.070 52.381 0.00 0.00 35.82 2.74
108 121 0.319555 TGTGAGCAAGCGGTGTAGTC 60.320 55.000 0.00 0.00 0.00 2.59
109 122 0.038159 GTGAGCAAGCGGTGTAGTCT 60.038 55.000 0.00 0.00 0.00 3.24
111 124 1.890489 TGAGCAAGCGGTGTAGTCTAA 59.110 47.619 0.00 0.00 0.00 2.10
112 125 2.496070 TGAGCAAGCGGTGTAGTCTAAT 59.504 45.455 0.00 0.00 0.00 1.73
113 126 3.056107 TGAGCAAGCGGTGTAGTCTAATT 60.056 43.478 0.00 0.00 0.00 1.40
114 127 4.158949 TGAGCAAGCGGTGTAGTCTAATTA 59.841 41.667 0.00 0.00 0.00 1.40
116 129 4.868734 AGCAAGCGGTGTAGTCTAATTAAC 59.131 41.667 0.00 0.00 0.00 2.01
117 130 4.259690 GCAAGCGGTGTAGTCTAATTAACG 60.260 45.833 0.00 0.00 0.00 3.18
118 131 4.037858 AGCGGTGTAGTCTAATTAACGG 57.962 45.455 0.00 0.00 0.00 4.44
123 136 5.066505 CGGTGTAGTCTAATTAACGGTACCT 59.933 44.000 10.90 0.00 0.00 3.08
139 152 2.736670 ACCTTTTGCTCTGTTGTCCT 57.263 45.000 0.00 0.00 0.00 3.85
147 160 1.467734 GCTCTGTTGTCCTGCATGAAG 59.532 52.381 0.00 0.00 0.00 3.02
162 175 0.764890 TGAAGTCCTGAACCCTGGTG 59.235 55.000 0.00 0.00 33.58 4.17
163 176 0.606673 GAAGTCCTGAACCCTGGTGC 60.607 60.000 0.00 0.00 33.58 5.01
164 177 1.352622 AAGTCCTGAACCCTGGTGCA 61.353 55.000 0.00 0.00 33.58 4.57
219 233 1.672356 GTTGATCTGGCTGGCGTGT 60.672 57.895 0.00 0.00 0.00 4.49
220 234 1.672030 TTGATCTGGCTGGCGTGTG 60.672 57.895 0.00 0.00 0.00 3.82
251 265 3.961408 GGTCTGCTCTAGAATTGGTCCTA 59.039 47.826 0.00 0.00 37.12 2.94
327 460 6.237901 TGGATTACACAGCTTGACTTTGTAT 58.762 36.000 3.37 0.00 40.38 2.29
351 484 7.252965 TCACATTGACAAAATTCGAGTTGTA 57.747 32.000 10.17 0.00 38.07 2.41
357 490 5.008217 TGACAAAATTCGAGTTGTACCTTGG 59.992 40.000 10.17 0.00 38.07 3.61
383 516 9.819267 GAAGGAAATTATATAGTAATCCCTCCG 57.181 37.037 6.45 0.00 0.00 4.63
384 517 8.912614 AGGAAATTATATAGTAATCCCTCCGT 57.087 34.615 6.45 0.00 0.00 4.69
473 714 3.323751 TTTGTTTACGGAGGGAGTAGC 57.676 47.619 0.00 0.00 0.00 3.58
481 722 1.469423 CGGAGGGAGTAGCGAAGAAAC 60.469 57.143 0.00 0.00 0.00 2.78
496 741 1.963515 AGAAACCAAGTTGCCATGTCC 59.036 47.619 0.00 0.00 0.00 4.02
539 789 0.674534 AGAAGAGTCGGTCGCTTGTT 59.325 50.000 0.00 0.00 36.38 2.83
559 809 3.659092 CGCAGCGAAGGTTGCCAA 61.659 61.111 9.98 0.00 46.38 4.52
569 819 1.668793 GGTTGCCAACTTGCCATGC 60.669 57.895 7.62 0.00 0.00 4.06
613 863 1.079127 AGATGGAAGGAACGTGCGG 60.079 57.895 0.00 0.00 0.00 5.69
615 865 0.672401 GATGGAAGGAACGTGCGGAA 60.672 55.000 0.00 0.00 0.00 4.30
616 866 0.035439 ATGGAAGGAACGTGCGGAAT 60.035 50.000 0.00 0.00 0.00 3.01
618 868 1.002201 TGGAAGGAACGTGCGGAATAA 59.998 47.619 0.00 0.00 0.00 1.40
650 932 2.949644 ACGGTTTCCCTTGAAAACTGAG 59.050 45.455 12.99 2.61 44.43 3.35
757 1048 2.029666 AGGCAGACACACAGACGC 59.970 61.111 0.00 0.00 0.00 5.19
804 1095 5.764131 GTGTTGAACGGTTGATTATTTCCA 58.236 37.500 0.00 0.00 0.00 3.53
805 1096 5.856455 GTGTTGAACGGTTGATTATTTCCAG 59.144 40.000 0.00 0.00 0.00 3.86
810 1384 2.936498 CGGTTGATTATTTCCAGACGCT 59.064 45.455 0.00 0.00 0.00 5.07
882 1463 0.739462 TTTCAGCCATAGCCACGTCG 60.739 55.000 0.00 0.00 41.25 5.12
896 1477 0.179156 ACGTCGCGGTACACATAAGG 60.179 55.000 6.13 0.00 0.00 2.69
900 1481 1.525306 GCGGTACACATAAGGCCCC 60.525 63.158 0.00 0.00 0.00 5.80
913 1494 1.225704 GGCCCCAGAGACTGATTGG 59.774 63.158 0.00 0.00 32.44 3.16
924 1505 0.534203 ACTGATTGGCACCGAAACGT 60.534 50.000 0.00 0.00 0.00 3.99
931 1542 1.500396 GCACCGAAACGTCCCATTC 59.500 57.895 0.00 0.00 0.00 2.67
1054 1683 1.150536 CTCCTCCTCCTCCTCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
1055 1684 1.619975 TCCTCCTCCTCCTCTCCGT 60.620 63.158 0.00 0.00 0.00 4.69
1059 1688 3.213402 CTCCTCCTCTCCGTCGCC 61.213 72.222 0.00 0.00 0.00 5.54
1060 1689 3.707640 CTCCTCCTCTCCGTCGCCT 62.708 68.421 0.00 0.00 0.00 5.52
1248 1880 2.159327 TTTCCCTTCGTTCCTTCGTC 57.841 50.000 0.00 0.00 0.00 4.20
1458 2133 3.495753 GGTAACAACAACTCTTACCACCG 59.504 47.826 0.00 0.00 39.45 4.94
1459 2134 1.589803 ACAACAACTCTTACCACCGC 58.410 50.000 0.00 0.00 0.00 5.68
1461 2136 0.250597 AACAACTCTTACCACCGCCC 60.251 55.000 0.00 0.00 0.00 6.13
1462 2137 1.373435 CAACTCTTACCACCGCCCA 59.627 57.895 0.00 0.00 0.00 5.36
1463 2138 0.250553 CAACTCTTACCACCGCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
1485 2172 1.955080 CGCCCCCTACTACTCTGTTAG 59.045 57.143 0.00 0.00 0.00 2.34
1490 2177 4.039366 CCCCCTACTACTCTGTTAGCATTC 59.961 50.000 0.00 0.00 0.00 2.67
1502 2189 3.017442 GTTAGCATTCCCAGTTTCTCCC 58.983 50.000 0.00 0.00 0.00 4.30
1574 2267 4.838152 CCGTGGAGTCGCCCCATG 62.838 72.222 0.00 0.00 39.74 3.66
1575 2268 4.082523 CGTGGAGTCGCCCCATGT 62.083 66.667 0.00 0.00 36.26 3.21
1576 2269 2.125106 GTGGAGTCGCCCCATGTC 60.125 66.667 0.00 0.00 35.91 3.06
1577 2270 3.399181 TGGAGTCGCCCCATGTCC 61.399 66.667 0.00 0.00 34.97 4.02
1578 2271 3.399181 GGAGTCGCCCCATGTCCA 61.399 66.667 0.00 0.00 0.00 4.02
1579 2272 2.746375 GGAGTCGCCCCATGTCCAT 61.746 63.158 0.00 0.00 0.00 3.41
1580 2273 1.524621 GAGTCGCCCCATGTCCATG 60.525 63.158 0.14 0.14 38.51 3.66
1686 2380 0.824109 TCGGTCAATGCCTACTCCTG 59.176 55.000 0.00 0.00 0.00 3.86
1691 2385 0.179034 CAATGCCTACTCCTGCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
1708 2407 9.131791 TCCTGCTCCCAATAAAATTAACTAATC 57.868 33.333 0.00 0.00 0.00 1.75
1709 2408 8.912988 CCTGCTCCCAATAAAATTAACTAATCA 58.087 33.333 0.00 0.00 0.00 2.57
1710 2409 9.956720 CTGCTCCCAATAAAATTAACTAATCAG 57.043 33.333 0.00 0.00 0.00 2.90
1711 2410 8.413229 TGCTCCCAATAAAATTAACTAATCAGC 58.587 33.333 0.00 0.00 0.00 4.26
1742 2444 8.915057 AAATGCTATTACTATTCTCAGTGCAT 57.085 30.769 0.00 0.00 36.53 3.96
1755 2457 6.544928 TCTCAGTGCATATTACTCTTTGGA 57.455 37.500 0.00 0.00 0.00 3.53
1756 2458 6.946340 TCTCAGTGCATATTACTCTTTGGAA 58.054 36.000 0.00 0.00 0.00 3.53
1757 2459 7.394016 TCTCAGTGCATATTACTCTTTGGAAA 58.606 34.615 0.00 0.00 0.00 3.13
1758 2460 8.049117 TCTCAGTGCATATTACTCTTTGGAAAT 58.951 33.333 0.00 0.00 0.00 2.17
1759 2461 9.330063 CTCAGTGCATATTACTCTTTGGAAATA 57.670 33.333 0.00 0.00 0.00 1.40
1760 2462 9.109393 TCAGTGCATATTACTCTTTGGAAATAC 57.891 33.333 0.00 0.00 0.00 1.89
1806 2508 3.373830 AGCTATGCCAAAATGCCCTAAA 58.626 40.909 0.00 0.00 0.00 1.85
1807 2509 3.385755 AGCTATGCCAAAATGCCCTAAAG 59.614 43.478 0.00 0.00 0.00 1.85
1808 2510 3.384467 GCTATGCCAAAATGCCCTAAAGA 59.616 43.478 0.00 0.00 0.00 2.52
1810 2512 5.453762 GCTATGCCAAAATGCCCTAAAGATT 60.454 40.000 0.00 0.00 0.00 2.40
1811 2513 6.239289 GCTATGCCAAAATGCCCTAAAGATTA 60.239 38.462 0.00 0.00 0.00 1.75
1836 2538 5.711976 CCCTTGTTCACTGATCCAACTAAAT 59.288 40.000 0.00 0.00 0.00 1.40
1865 2567 7.361799 GCCACCACCTTCTAAAATTAACTACTG 60.362 40.741 0.00 0.00 0.00 2.74
1866 2568 7.664318 CCACCACCTTCTAAAATTAACTACTGT 59.336 37.037 0.00 0.00 0.00 3.55
1868 2570 9.716531 ACCACCTTCTAAAATTAACTACTGTAC 57.283 33.333 0.00 0.00 0.00 2.90
1927 2629 6.073058 CGAGGCTTTAATTATGCATCTTGCTA 60.073 38.462 0.19 0.00 45.31 3.49
1936 2638 7.997773 ATTATGCATCTTGCTATGTCAATCT 57.002 32.000 0.19 0.00 45.31 2.40
1939 2641 6.609237 TGCATCTTGCTATGTCAATCTAAC 57.391 37.500 0.75 0.00 45.31 2.34
2086 2793 0.904865 CTCACTGTCCTACCTGCCCA 60.905 60.000 0.00 0.00 0.00 5.36
2124 2831 7.782049 TCGGAGGAATATATATCAGCGAAATT 58.218 34.615 0.00 0.00 0.00 1.82
2128 2835 9.371136 GAGGAATATATATCAGCGAAATTCACA 57.629 33.333 0.00 0.00 0.00 3.58
2213 2921 4.187694 CTGCTCCACTATTTTCTGTCCTC 58.812 47.826 0.00 0.00 0.00 3.71
2228 2936 2.163509 GTCCTCTTTCCCCTTGCTTTC 58.836 52.381 0.00 0.00 0.00 2.62
2333 3041 1.475403 TCCTAGAGCCTGGAAAGACG 58.525 55.000 0.00 0.00 0.00 4.18
2334 3042 1.005569 TCCTAGAGCCTGGAAAGACGA 59.994 52.381 0.00 0.00 0.00 4.20
2335 3043 1.825474 CCTAGAGCCTGGAAAGACGAA 59.175 52.381 0.00 0.00 0.00 3.85
2336 3044 2.432510 CCTAGAGCCTGGAAAGACGAAT 59.567 50.000 0.00 0.00 0.00 3.34
2337 3045 2.393271 AGAGCCTGGAAAGACGAATG 57.607 50.000 0.00 0.00 0.00 2.67
2338 3046 1.065854 AGAGCCTGGAAAGACGAATGG 60.066 52.381 0.00 0.00 0.00 3.16
2339 3047 0.984230 AGCCTGGAAAGACGAATGGA 59.016 50.000 0.00 0.00 0.00 3.41
2340 3048 1.561542 AGCCTGGAAAGACGAATGGAT 59.438 47.619 0.00 0.00 0.00 3.41
2341 3049 1.672881 GCCTGGAAAGACGAATGGATG 59.327 52.381 0.00 0.00 0.00 3.51
2342 3050 2.941415 GCCTGGAAAGACGAATGGATGT 60.941 50.000 0.00 0.00 0.00 3.06
2343 3051 2.939103 CCTGGAAAGACGAATGGATGTC 59.061 50.000 0.00 0.00 35.33 3.06
2344 3052 3.369892 CCTGGAAAGACGAATGGATGTCT 60.370 47.826 0.00 0.00 46.98 3.41
2345 3053 4.141937 CCTGGAAAGACGAATGGATGTCTA 60.142 45.833 0.00 0.00 44.36 2.59
2346 3054 5.414789 TGGAAAGACGAATGGATGTCTAA 57.585 39.130 0.00 0.00 44.36 2.10
2347 3055 5.419542 TGGAAAGACGAATGGATGTCTAAG 58.580 41.667 0.00 0.00 44.36 2.18
2348 3056 5.186992 TGGAAAGACGAATGGATGTCTAAGA 59.813 40.000 0.00 0.00 44.36 2.10
2349 3057 5.520649 GGAAAGACGAATGGATGTCTAAGAC 59.479 44.000 0.00 0.00 44.36 3.01
2350 3058 4.294416 AGACGAATGGATGTCTAAGACG 57.706 45.455 0.00 0.00 43.36 4.18
2356 3064 5.339875 CGAATGGATGTCTAAGACGAATACG 59.660 44.000 0.00 0.00 45.75 3.06
2359 3067 1.818850 TGTCTAAGACGAATACGCGC 58.181 50.000 5.73 0.00 43.96 6.86
2369 3077 6.520792 AGACGAATACGCGCTAATTAATTT 57.479 33.333 5.73 0.00 43.96 1.82
2660 3389 1.205893 GTCTAGTTGCCACCTCAGAGG 59.794 57.143 15.72 15.72 42.49 3.69
2741 3470 5.116084 TGGCTAGGCTTATTGAGTGATTT 57.884 39.130 18.18 0.00 0.00 2.17
2747 3476 4.393062 AGGCTTATTGAGTGATTTGTCACG 59.607 41.667 3.21 0.00 44.71 4.35
2756 3485 4.820897 AGTGATTTGTCACGAAGATGCTA 58.179 39.130 3.21 0.00 44.71 3.49
2843 3572 9.811995 TTCATAAGTAGTAGAATAAATGTGCGT 57.188 29.630 0.00 0.00 0.00 5.24
2876 3605 1.328279 CACTGGTGTTTCCCCTTTCC 58.672 55.000 0.00 0.00 34.77 3.13
2883 3612 0.610785 GTTTCCCCTTTCCGCCATGA 60.611 55.000 0.00 0.00 0.00 3.07
2898 3627 1.399440 CCATGAGGATGACTTGTTGCG 59.601 52.381 0.00 0.00 36.89 4.85
2950 3679 3.586470 TTGCCTCTTTAGGTGGTTTGA 57.414 42.857 0.00 0.00 45.64 2.69
3048 3976 7.182817 TGTCTAGTTCTTGGTATTATGCTGT 57.817 36.000 0.00 0.00 0.00 4.40
3297 4225 2.023673 TGAAACAAGCCAGTGTTCCTG 58.976 47.619 0.00 0.00 40.86 3.86
3323 4251 1.571955 TCTGCTTGCCCTATGTCTCA 58.428 50.000 0.00 0.00 0.00 3.27
3541 4473 6.879962 TGTCTAATTTTCAGTTACCGTTTCG 58.120 36.000 0.00 0.00 0.00 3.46
3548 4480 1.191647 CAGTTACCGTTTCGTCTGCAC 59.808 52.381 0.00 0.00 0.00 4.57
3565 4497 1.453155 CACACCACCAAGCTGTATCC 58.547 55.000 0.00 0.00 0.00 2.59
3614 4546 2.550978 CGGACCGTCAGATGCTAATTT 58.449 47.619 5.48 0.00 0.00 1.82
3615 4547 2.285220 CGGACCGTCAGATGCTAATTTG 59.715 50.000 5.48 0.00 0.00 2.32
3867 4799 2.028748 GCAACCTGCCATCAATGTCTTT 60.029 45.455 0.00 0.00 37.42 2.52
3882 4814 8.690203 TCAATGTCTTTAAAGAAATCCAGACA 57.310 30.769 19.13 11.98 39.01 3.41
3906 4838 3.511362 TGAAGCAAACCCTTCAGCA 57.489 47.368 0.81 0.00 44.49 4.41
3978 4910 1.334869 GTATTCAATGCTTCCGGCCTG 59.665 52.381 0.00 0.00 40.92 4.85
4226 5161 8.733458 TCTTCAAGACATTCTTTGTTGATATGG 58.267 33.333 0.00 0.00 39.18 2.74
4243 5178 8.893727 GTTGATATGGTTTAGCTTTATCTGTGT 58.106 33.333 0.00 0.00 0.00 3.72
4651 5586 2.000447 CTTACTGCAAGGTAAGGACGC 59.000 52.381 14.95 0.00 42.67 5.19
4655 5590 0.323302 TGCAAGGTAAGGACGCATCA 59.677 50.000 0.00 0.00 0.00 3.07
4660 5595 1.751924 AGGTAAGGACGCATCAGTCTC 59.248 52.381 0.00 0.00 40.76 3.36
4674 5609 1.338337 CAGTCTCACAGTGTTCGGTCT 59.662 52.381 0.00 0.00 0.00 3.85
4680 5615 4.038763 TCTCACAGTGTTCGGTCTTGTTAT 59.961 41.667 0.00 0.00 0.00 1.89
4681 5616 4.055360 TCACAGTGTTCGGTCTTGTTATG 58.945 43.478 0.00 0.00 0.00 1.90
4704 5680 6.424883 TGTTTTCTACCACCTACTTTTTGGA 58.575 36.000 0.00 0.00 34.24 3.53
4709 5685 6.400568 TCTACCACCTACTTTTTGGATAACG 58.599 40.000 0.00 0.00 34.24 3.18
5013 5994 0.951558 GTTAGGTGTGGCACTTGTGG 59.048 55.000 19.83 0.00 34.40 4.17
5101 6082 4.712476 AGCTGTAAATCATCCCTTAGCTG 58.288 43.478 0.00 0.00 38.68 4.24
5213 6203 6.272090 TGATATATCTCCACATGGCCAGTTAA 59.728 38.462 13.05 0.00 34.44 2.01
5220 6210 6.031751 TCCACATGGCCAGTTAATTTTTAC 57.968 37.500 13.05 0.00 34.44 2.01
5221 6211 5.777732 TCCACATGGCCAGTTAATTTTTACT 59.222 36.000 13.05 0.00 34.44 2.24
5222 6212 6.071616 TCCACATGGCCAGTTAATTTTTACTC 60.072 38.462 13.05 0.00 34.44 2.59
5223 6213 6.099341 CACATGGCCAGTTAATTTTTACTCC 58.901 40.000 13.05 0.00 0.00 3.85
5224 6214 5.186992 ACATGGCCAGTTAATTTTTACTCCC 59.813 40.000 13.05 0.00 0.00 4.30
5225 6215 5.005628 TGGCCAGTTAATTTTTACTCCCT 57.994 39.130 0.00 0.00 0.00 4.20
5226 6216 5.014202 TGGCCAGTTAATTTTTACTCCCTC 58.986 41.667 0.00 0.00 0.00 4.30
5227 6217 4.401519 GGCCAGTTAATTTTTACTCCCTCC 59.598 45.833 0.00 0.00 0.00 4.30
5228 6218 4.095932 GCCAGTTAATTTTTACTCCCTCCG 59.904 45.833 0.00 0.00 0.00 4.63
5229 6219 5.250982 CCAGTTAATTTTTACTCCCTCCGT 58.749 41.667 0.00 0.00 0.00 4.69
5230 6220 5.708697 CCAGTTAATTTTTACTCCCTCCGTT 59.291 40.000 0.00 0.00 0.00 4.44
5231 6221 6.128090 CCAGTTAATTTTTACTCCCTCCGTTC 60.128 42.308 0.00 0.00 0.00 3.95
5232 6222 5.942236 AGTTAATTTTTACTCCCTCCGTTCC 59.058 40.000 0.00 0.00 0.00 3.62
5233 6223 4.652679 AATTTTTACTCCCTCCGTTCCT 57.347 40.909 0.00 0.00 0.00 3.36
5234 6224 5.767277 AATTTTTACTCCCTCCGTTCCTA 57.233 39.130 0.00 0.00 0.00 2.94
5235 6225 5.767277 ATTTTTACTCCCTCCGTTCCTAA 57.233 39.130 0.00 0.00 0.00 2.69
5236 6226 5.565455 TTTTTACTCCCTCCGTTCCTAAA 57.435 39.130 0.00 0.00 0.00 1.85
5237 6227 5.767277 TTTTACTCCCTCCGTTCCTAAAT 57.233 39.130 0.00 0.00 0.00 1.40
5238 6228 6.872585 TTTTACTCCCTCCGTTCCTAAATA 57.127 37.500 0.00 0.00 0.00 1.40
5239 6229 7.441903 TTTTACTCCCTCCGTTCCTAAATAT 57.558 36.000 0.00 0.00 0.00 1.28
5240 6230 8.551682 TTTTACTCCCTCCGTTCCTAAATATA 57.448 34.615 0.00 0.00 0.00 0.86
5241 6231 8.551682 TTTACTCCCTCCGTTCCTAAATATAA 57.448 34.615 0.00 0.00 0.00 0.98
5242 6232 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5243 6233 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5244 6234 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5245 6235 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5246 6236 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5247 6237 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5248 6238 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5249 6239 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
5303 6293 9.626045 TGATGTATGTAGACATATTTTAGAGCG 57.374 33.333 5.69 0.00 40.18 5.03
5304 6294 9.627395 GATGTATGTAGACATATTTTAGAGCGT 57.373 33.333 5.69 0.00 40.18 5.07
5310 6300 9.894783 TGTAGACATATTTTAGAGCGTAGATTC 57.105 33.333 0.00 0.00 0.00 2.52
5311 6301 9.894783 GTAGACATATTTTAGAGCGTAGATTCA 57.105 33.333 0.00 0.00 0.00 2.57
5312 6302 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
5313 6303 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
5314 6304 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
5315 6305 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
5316 6306 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
5317 6307 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
5318 6308 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
5319 6309 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
5320 6310 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
5321 6311 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
5322 6312 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
5323 6313 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
5324 6314 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
5325 6315 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
5326 6316 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5327 6317 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5328 6318 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5329 6319 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5330 6320 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5331 6321 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5332 6322 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5333 6323 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5334 6324 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
5335 6325 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5336 6326 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5337 6327 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5338 6328 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5339 6329 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5340 6330 2.165641 TGCTCCGTATGTAGTCACTTGG 59.834 50.000 0.00 0.00 0.00 3.61
5341 6331 2.165845 GCTCCGTATGTAGTCACTTGGT 59.834 50.000 0.00 0.00 0.00 3.67
5342 6332 3.770666 CTCCGTATGTAGTCACTTGGTG 58.229 50.000 0.00 0.00 34.45 4.17
5343 6333 3.423749 TCCGTATGTAGTCACTTGGTGA 58.576 45.455 0.00 0.00 40.50 4.02
5344 6334 3.827876 TCCGTATGTAGTCACTTGGTGAA 59.172 43.478 1.77 0.00 44.49 3.18
5345 6335 4.281435 TCCGTATGTAGTCACTTGGTGAAA 59.719 41.667 1.77 0.00 44.49 2.69
5346 6336 5.046878 TCCGTATGTAGTCACTTGGTGAAAT 60.047 40.000 1.77 0.00 44.49 2.17
5347 6337 5.291128 CCGTATGTAGTCACTTGGTGAAATC 59.709 44.000 1.77 0.00 44.49 2.17
5348 6338 6.100004 CGTATGTAGTCACTTGGTGAAATCT 58.900 40.000 1.77 0.00 44.49 2.40
5349 6339 6.590292 CGTATGTAGTCACTTGGTGAAATCTT 59.410 38.462 1.77 0.00 44.49 2.40
5350 6340 7.117812 CGTATGTAGTCACTTGGTGAAATCTTT 59.882 37.037 1.77 0.00 44.49 2.52
5351 6341 9.431887 GTATGTAGTCACTTGGTGAAATCTTTA 57.568 33.333 1.77 0.00 44.49 1.85
5352 6342 7.962964 TGTAGTCACTTGGTGAAATCTTTAG 57.037 36.000 1.77 0.00 44.49 1.85
5353 6343 7.732025 TGTAGTCACTTGGTGAAATCTTTAGA 58.268 34.615 1.77 0.00 44.49 2.10
5354 6344 8.208224 TGTAGTCACTTGGTGAAATCTTTAGAA 58.792 33.333 1.77 0.00 44.49 2.10
5355 6345 9.052759 GTAGTCACTTGGTGAAATCTTTAGAAA 57.947 33.333 1.77 0.00 44.49 2.52
5356 6346 8.159344 AGTCACTTGGTGAAATCTTTAGAAAG 57.841 34.615 1.77 0.00 44.49 2.62
5357 6347 7.993183 AGTCACTTGGTGAAATCTTTAGAAAGA 59.007 33.333 7.15 7.15 44.49 2.52
5358 6348 8.070769 GTCACTTGGTGAAATCTTTAGAAAGAC 58.929 37.037 6.85 0.00 44.45 3.01
5359 6349 7.993183 TCACTTGGTGAAATCTTTAGAAAGACT 59.007 33.333 6.85 0.00 42.31 3.24
5360 6350 8.624776 CACTTGGTGAAATCTTTAGAAAGACTT 58.375 33.333 6.85 2.70 40.68 3.01
5361 6351 9.847224 ACTTGGTGAAATCTTTAGAAAGACTTA 57.153 29.630 6.85 0.00 46.80 2.24
5386 6376 8.691661 ATATTTGGGAACATATTTTAGAGCGT 57.308 30.769 0.00 0.00 42.32 5.07
5387 6377 9.787435 ATATTTGGGAACATATTTTAGAGCGTA 57.213 29.630 0.00 0.00 42.32 4.42
5388 6378 7.548196 TTTGGGAACATATTTTAGAGCGTAG 57.452 36.000 0.00 0.00 42.32 3.51
5389 6379 6.474140 TGGGAACATATTTTAGAGCGTAGA 57.526 37.500 0.00 0.00 33.40 2.59
5390 6380 7.062749 TGGGAACATATTTTAGAGCGTAGAT 57.937 36.000 0.00 0.00 33.40 1.98
5391 6381 7.506114 TGGGAACATATTTTAGAGCGTAGATT 58.494 34.615 0.00 0.00 33.40 2.40
5392 6382 7.656137 TGGGAACATATTTTAGAGCGTAGATTC 59.344 37.037 0.00 0.00 33.40 2.52
5393 6383 7.656137 GGGAACATATTTTAGAGCGTAGATTCA 59.344 37.037 0.00 0.00 0.00 2.57
5394 6384 8.488764 GGAACATATTTTAGAGCGTAGATTCAC 58.511 37.037 0.00 0.00 0.00 3.18
5395 6385 9.250624 GAACATATTTTAGAGCGTAGATTCACT 57.749 33.333 0.00 0.00 0.00 3.41
5396 6386 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
5397 6387 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
5398 6388 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
5399 6389 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
5400 6390 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
5401 6391 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
5402 6392 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
5403 6393 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
5404 6394 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
5405 6395 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
5406 6396 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
5407 6397 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
5408 6398 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5409 6399 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5410 6400 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5411 6401 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5412 6402 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5413 6403 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5414 6404 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5415 6405 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5416 6406 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
5417 6407 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5418 6408 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5419 6409 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5420 6410 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5421 6411 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5422 6412 2.165641 TGCTCCGTATGTAGTCACTTGG 59.834 50.000 0.00 0.00 0.00 3.61
5423 6413 2.165845 GCTCCGTATGTAGTCACTTGGT 59.834 50.000 0.00 0.00 0.00 3.67
5424 6414 3.770666 CTCCGTATGTAGTCACTTGGTG 58.229 50.000 0.00 0.00 34.45 4.17
5425 6415 3.423749 TCCGTATGTAGTCACTTGGTGA 58.576 45.455 0.00 0.00 40.50 4.02
5426 6416 3.827876 TCCGTATGTAGTCACTTGGTGAA 59.172 43.478 1.77 0.00 44.49 3.18
5427 6417 4.281435 TCCGTATGTAGTCACTTGGTGAAA 59.719 41.667 1.77 0.00 44.49 2.69
5428 6418 5.046878 TCCGTATGTAGTCACTTGGTGAAAT 60.047 40.000 1.77 0.00 44.49 2.17
5429 6419 5.291128 CCGTATGTAGTCACTTGGTGAAATC 59.709 44.000 1.77 0.00 44.49 2.17
5430 6420 6.100004 CGTATGTAGTCACTTGGTGAAATCT 58.900 40.000 1.77 0.00 44.49 2.40
5431 6421 6.590292 CGTATGTAGTCACTTGGTGAAATCTT 59.410 38.462 1.77 0.00 44.49 2.40
5432 6422 7.117812 CGTATGTAGTCACTTGGTGAAATCTTT 59.882 37.037 1.77 0.00 44.49 2.52
5433 6423 9.431887 GTATGTAGTCACTTGGTGAAATCTTTA 57.568 33.333 1.77 0.00 44.49 1.85
5434 6424 7.962964 TGTAGTCACTTGGTGAAATCTTTAG 57.037 36.000 1.77 0.00 44.49 1.85
5435 6425 7.732025 TGTAGTCACTTGGTGAAATCTTTAGA 58.268 34.615 1.77 0.00 44.49 2.10
5436 6426 8.208224 TGTAGTCACTTGGTGAAATCTTTAGAA 58.792 33.333 1.77 0.00 44.49 2.10
5437 6427 9.052759 GTAGTCACTTGGTGAAATCTTTAGAAA 57.947 33.333 1.77 0.00 44.49 2.52
5438 6428 8.159344 AGTCACTTGGTGAAATCTTTAGAAAG 57.841 34.615 1.77 0.00 44.49 2.62
5439 6429 7.993183 AGTCACTTGGTGAAATCTTTAGAAAGA 59.007 33.333 7.15 7.15 44.49 2.52
5440 6430 8.070769 GTCACTTGGTGAAATCTTTAGAAAGAC 58.929 37.037 6.85 0.00 44.45 3.01
5441 6431 7.993183 TCACTTGGTGAAATCTTTAGAAAGACT 59.007 33.333 6.85 0.00 42.31 3.24
5442 6432 8.624776 CACTTGGTGAAATCTTTAGAAAGACTT 58.375 33.333 6.85 2.70 40.68 3.01
5443 6433 9.847224 ACTTGGTGAAATCTTTAGAAAGACTTA 57.153 29.630 6.85 0.00 46.80 2.24
5456 6446 8.726870 TTAGAAAGACTTATATTTGGGAACGG 57.273 34.615 0.00 0.00 0.00 4.44
5457 6447 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
5458 6448 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
5459 6449 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
5460 6450 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
5461 6451 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
5462 6452 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
5469 6459 1.275573 GGGAACGGAGGGAGTATATGC 59.724 57.143 0.00 0.00 0.00 3.14
5474 6464 2.296471 ACGGAGGGAGTATATGCTTTCG 59.704 50.000 0.00 0.00 0.00 3.46
5477 6469 3.321497 GAGGGAGTATATGCTTTCGCTG 58.679 50.000 4.78 0.00 33.64 5.18
5492 6484 6.072508 TGCTTTCGCTGAGAAATCAAATTACT 60.073 34.615 7.02 0.00 46.60 2.24
5493 6485 7.119116 TGCTTTCGCTGAGAAATCAAATTACTA 59.881 33.333 7.02 0.00 46.60 1.82
5494 6486 7.426743 GCTTTCGCTGAGAAATCAAATTACTAC 59.573 37.037 7.02 0.00 46.60 2.73
5495 6487 8.547967 TTTCGCTGAGAAATCAAATTACTACT 57.452 30.769 2.31 0.00 43.35 2.57
5496 6488 7.757097 TCGCTGAGAAATCAAATTACTACTC 57.243 36.000 0.00 0.00 0.00 2.59
5497 6489 6.757010 TCGCTGAGAAATCAAATTACTACTCC 59.243 38.462 0.00 0.00 0.00 3.85
5498 6490 6.018669 CGCTGAGAAATCAAATTACTACTCCC 60.019 42.308 0.00 0.00 0.00 4.30
5499 6491 7.051000 GCTGAGAAATCAAATTACTACTCCCT 58.949 38.462 0.00 0.00 0.00 4.20
5500 6492 7.225734 GCTGAGAAATCAAATTACTACTCCCTC 59.774 40.741 0.00 0.00 0.00 4.30
5501 6493 7.565680 TGAGAAATCAAATTACTACTCCCTCC 58.434 38.462 0.00 0.00 0.00 4.30
5502 6494 6.583562 AGAAATCAAATTACTACTCCCTCCG 58.416 40.000 0.00 0.00 0.00 4.63
5503 6495 5.952347 AATCAAATTACTACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
5504 6496 5.952347 ATCAAATTACTACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
5505 6497 5.750352 TCAAATTACTACTCCCTCCGTTT 57.250 39.130 0.00 0.00 0.00 3.60
5506 6498 5.727434 TCAAATTACTACTCCCTCCGTTTC 58.273 41.667 0.00 0.00 0.00 2.78
5507 6499 4.750021 AATTACTACTCCCTCCGTTTCC 57.250 45.455 0.00 0.00 0.00 3.13
5508 6500 2.905415 TACTACTCCCTCCGTTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
5509 6501 2.019807 ACTACTCCCTCCGTTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
5510 6502 2.332117 ACTACTCCCTCCGTTTCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
5511 6503 2.910977 ACTACTCCCTCCGTTTCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
5512 6504 4.098894 ACTACTCCCTCCGTTTCCAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5513 6505 4.720273 ACTACTCCCTCCGTTTCCAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
5514 6506 5.901276 ACTACTCCCTCCGTTTCCAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
5515 6507 5.703730 ACTCCCTCCGTTTCCAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
5516 6508 5.681639 ACTCCCTCCGTTTCCAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
5517 6509 5.191124 ACTCCCTCCGTTTCCAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
5518 6510 5.677567 TCCCTCCGTTTCCAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
5519 6511 5.427481 TCCCTCCGTTTCCAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
5520 6512 6.069847 TCCCTCCGTTTCCAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
5521 6513 6.602009 CCCTCCGTTTCCAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
5522 6514 7.201705 CCCTCCGTTTCCAAATATAAGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
5523 6515 7.553044 CCTCCGTTTCCAAATATAAGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
5524 6516 9.595823 CTCCGTTTCCAAATATAAGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
5525 6517 9.595823 TCCGTTTCCAAATATAAGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
5526 6518 9.595823 CCGTTTCCAAATATAAGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
5538 6530 7.807977 AAGTCTTTCTAGAGATTGCAACAAA 57.192 32.000 0.00 0.00 0.00 2.83
5539 6531 7.992754 AGTCTTTCTAGAGATTGCAACAAAT 57.007 32.000 0.00 0.00 0.00 2.32
5540 6532 7.814642 AGTCTTTCTAGAGATTGCAACAAATG 58.185 34.615 0.00 0.00 0.00 2.32
5541 6533 7.663081 AGTCTTTCTAGAGATTGCAACAAATGA 59.337 33.333 0.00 0.00 0.00 2.57
5542 6534 7.748241 GTCTTTCTAGAGATTGCAACAAATGAC 59.252 37.037 0.00 3.53 0.00 3.06
5543 6535 7.663081 TCTTTCTAGAGATTGCAACAAATGACT 59.337 33.333 0.00 0.00 0.00 3.41
5544 6536 8.846943 TTTCTAGAGATTGCAACAAATGACTA 57.153 30.769 0.00 0.00 0.00 2.59
5545 6537 7.834068 TCTAGAGATTGCAACAAATGACTAC 57.166 36.000 0.00 0.00 0.00 2.73
5546 6538 7.386059 TCTAGAGATTGCAACAAATGACTACA 58.614 34.615 0.00 0.00 0.00 2.74
5547 6539 8.043113 TCTAGAGATTGCAACAAATGACTACAT 58.957 33.333 0.00 0.00 38.50 2.29
5548 6540 9.317936 CTAGAGATTGCAACAAATGACTACATA 57.682 33.333 0.00 0.00 35.50 2.29
5549 6541 7.978982 AGAGATTGCAACAAATGACTACATAC 58.021 34.615 0.00 0.00 35.50 2.39
5550 6542 6.775088 AGATTGCAACAAATGACTACATACG 58.225 36.000 0.00 0.00 35.50 3.06
5551 6543 4.937696 TGCAACAAATGACTACATACGG 57.062 40.909 0.00 0.00 35.50 4.02
5552 6544 4.570930 TGCAACAAATGACTACATACGGA 58.429 39.130 0.00 0.00 35.50 4.69
5553 6545 4.629634 TGCAACAAATGACTACATACGGAG 59.370 41.667 0.00 0.00 35.50 4.63
5554 6546 4.494199 GCAACAAATGACTACATACGGAGC 60.494 45.833 0.00 0.00 35.50 4.70
5555 6547 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
5556 6548 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
5557 6549 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
5558 6550 5.880332 ACAAATGACTACATACGGAGCAAAT 59.120 36.000 0.00 0.00 35.50 2.32
5559 6551 6.374333 ACAAATGACTACATACGGAGCAAATT 59.626 34.615 0.00 0.00 35.50 1.82
5560 6552 5.991328 ATGACTACATACGGAGCAAATTG 57.009 39.130 0.00 0.00 34.71 2.32
5561 6553 5.079689 TGACTACATACGGAGCAAATTGA 57.920 39.130 0.00 0.00 0.00 2.57
5562 6554 5.483811 TGACTACATACGGAGCAAATTGAA 58.516 37.500 0.00 0.00 0.00 2.69
5563 6555 6.112734 TGACTACATACGGAGCAAATTGAAT 58.887 36.000 0.00 0.00 0.00 2.57
5564 6556 6.037062 TGACTACATACGGAGCAAATTGAATG 59.963 38.462 0.00 0.00 0.00 2.67
5565 6557 6.112734 ACTACATACGGAGCAAATTGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
5566 6558 5.895636 ACATACGGAGCAAATTGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
5567 6559 6.455360 ACATACGGAGCAAATTGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
5568 6560 6.498304 ACATACGGAGCAAATTGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
5569 6561 6.319658 ACATACGGAGCAAATTGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
5570 6562 7.498900 ACATACGGAGCAAATTGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
5571 6563 6.124088 ACGGAGCAAATTGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
5572 6564 5.647658 ACGGAGCAAATTGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
5573 6565 6.319658 ACGGAGCAAATTGAATGAATCTACAT 59.680 34.615 0.00 0.00 0.00 2.29
5574 6566 7.148018 ACGGAGCAAATTGAATGAATCTACATT 60.148 33.333 0.00 0.00 42.19 2.71
5575 6567 7.703621 CGGAGCAAATTGAATGAATCTACATTT 59.296 33.333 0.00 0.00 40.03 2.32
5576 6568 9.374838 GGAGCAAATTGAATGAATCTACATTTT 57.625 29.630 0.00 0.00 40.03 1.82
5651 6643 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
5652 6644 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5653 6645 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5654 6646 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5678 6670 0.839946 TCCCAGCTAGGAGAATTGGC 59.160 55.000 0.00 0.00 41.22 4.52
5789 6786 3.185880 ACCTCCAGTTTGTAGGCTAGA 57.814 47.619 0.00 0.00 33.42 2.43
5791 6788 3.452627 ACCTCCAGTTTGTAGGCTAGATG 59.547 47.826 0.00 0.00 33.42 2.90
5793 6790 4.162320 CCTCCAGTTTGTAGGCTAGATGAA 59.838 45.833 0.00 0.00 0.00 2.57
5807 6809 6.836577 GCTAGATGAACTTAGCCTACAAAG 57.163 41.667 0.00 0.00 0.00 2.77
5812 6814 4.952460 TGAACTTAGCCTACAAAGACGTT 58.048 39.130 0.00 0.00 0.00 3.99
5813 6815 4.986659 TGAACTTAGCCTACAAAGACGTTC 59.013 41.667 0.00 0.00 0.00 3.95
5832 6837 4.444720 CGTTCTATATTTTGAGACGGAGGC 59.555 45.833 0.00 0.00 0.00 4.70
5862 6871 4.903054 TCATATGGATCTGAATGAGTGCC 58.097 43.478 2.13 0.00 0.00 5.01
5903 6920 1.068281 CCCATGATCCGACTGACTGAG 59.932 57.143 0.00 0.00 0.00 3.35
5907 6924 2.087646 TGATCCGACTGACTGAGTGAG 58.912 52.381 0.00 0.00 33.83 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.668541 TGTAAATTCTCAGAAGCACTATGC 57.331 37.500 0.00 0.00 45.46 3.14
30 32 6.034898 GGTTCACATTTGCATAATTACAGTGC 59.965 38.462 3.10 3.10 39.26 4.40
33 35 5.229887 GCGGTTCACATTTGCATAATTACAG 59.770 40.000 0.00 0.00 0.00 2.74
53 55 4.016706 GCCCACACCAGTAGCGGT 62.017 66.667 0.00 0.00 41.07 5.68
54 56 3.706373 AGCCCACACCAGTAGCGG 61.706 66.667 0.00 0.00 32.91 5.52
71 73 4.590918 TCACAAACTTCTTTACACACCCA 58.409 39.130 0.00 0.00 0.00 4.51
99 112 5.066505 AGGTACCGTTAATTAGACTACACCG 59.933 44.000 6.18 0.00 0.00 4.94
106 119 6.592994 AGAGCAAAAGGTACCGTTAATTAGAC 59.407 38.462 13.75 2.98 0.00 2.59
108 121 6.370718 ACAGAGCAAAAGGTACCGTTAATTAG 59.629 38.462 13.75 5.59 0.00 1.73
109 122 6.232692 ACAGAGCAAAAGGTACCGTTAATTA 58.767 36.000 13.75 0.00 0.00 1.40
111 124 4.648651 ACAGAGCAAAAGGTACCGTTAAT 58.351 39.130 13.75 2.88 0.00 1.40
112 125 4.075963 ACAGAGCAAAAGGTACCGTTAA 57.924 40.909 13.75 0.00 0.00 2.01
113 126 3.756933 ACAGAGCAAAAGGTACCGTTA 57.243 42.857 13.75 0.00 0.00 3.18
114 127 2.616842 CAACAGAGCAAAAGGTACCGTT 59.383 45.455 7.32 7.32 0.00 4.44
116 129 2.218603 ACAACAGAGCAAAAGGTACCG 58.781 47.619 6.18 0.00 0.00 4.02
117 130 2.552743 GGACAACAGAGCAAAAGGTACC 59.447 50.000 2.73 2.73 0.00 3.34
118 131 3.251004 CAGGACAACAGAGCAAAAGGTAC 59.749 47.826 0.00 0.00 0.00 3.34
123 136 1.761449 TGCAGGACAACAGAGCAAAA 58.239 45.000 0.00 0.00 31.42 2.44
139 152 1.067295 AGGGTTCAGGACTTCATGCA 58.933 50.000 0.00 0.00 0.00 3.96
147 160 1.302832 CTGCACCAGGGTTCAGGAC 60.303 63.158 9.86 0.00 36.11 3.85
162 175 6.003234 AGATGAGTCACATATACGTACTGC 57.997 41.667 0.00 0.00 39.56 4.40
163 176 8.535690 TCTAGATGAGTCACATATACGTACTG 57.464 38.462 0.00 1.03 39.56 2.74
164 177 9.727859 AATCTAGATGAGTCACATATACGTACT 57.272 33.333 5.86 0.00 39.56 2.73
165 178 9.762062 CAATCTAGATGAGTCACATATACGTAC 57.238 37.037 5.86 0.00 39.56 3.67
166 179 8.947115 CCAATCTAGATGAGTCACATATACGTA 58.053 37.037 5.86 0.00 39.56 3.57
219 233 3.541950 GAGCAGACCAGGCACAGCA 62.542 63.158 4.85 0.00 0.00 4.41
220 234 1.892819 TAGAGCAGACCAGGCACAGC 61.893 60.000 0.00 0.00 0.00 4.40
251 265 1.139095 GCGCGCCTTGTCTACTACT 59.861 57.895 23.24 0.00 0.00 2.57
327 460 6.130298 ACAACTCGAATTTTGTCAATGTGA 57.870 33.333 1.80 0.00 29.75 3.58
357 490 9.819267 CGGAGGGATTACTATATAATTTCCTTC 57.181 37.037 0.00 0.00 0.00 3.46
416 657 9.674824 GAGCGTTTATAGATAACTAAAGTAGCA 57.325 33.333 0.00 0.00 32.04 3.49
417 658 9.896263 AGAGCGTTTATAGATAACTAAAGTAGC 57.104 33.333 0.00 0.00 32.04 3.58
450 691 3.564053 ACTCCCTCCGTAAACAAAACA 57.436 42.857 0.00 0.00 0.00 2.83
451 692 3.434641 GCTACTCCCTCCGTAAACAAAAC 59.565 47.826 0.00 0.00 0.00 2.43
452 693 3.667360 GCTACTCCCTCCGTAAACAAAA 58.333 45.455 0.00 0.00 0.00 2.44
453 694 2.353011 CGCTACTCCCTCCGTAAACAAA 60.353 50.000 0.00 0.00 0.00 2.83
454 695 1.203052 CGCTACTCCCTCCGTAAACAA 59.797 52.381 0.00 0.00 0.00 2.83
455 696 0.813184 CGCTACTCCCTCCGTAAACA 59.187 55.000 0.00 0.00 0.00 2.83
473 714 2.034558 ACATGGCAACTTGGTTTCTTCG 59.965 45.455 0.00 0.00 45.58 3.79
481 722 0.240945 GAACGGACATGGCAACTTGG 59.759 55.000 0.00 0.00 45.58 3.61
539 789 3.118454 GCAACCTTCGCTGCGCTA 61.118 61.111 18.65 6.84 0.00 4.26
559 809 0.111061 TTCAGTCTGGCATGGCAAGT 59.889 50.000 23.47 13.50 30.42 3.16
569 819 3.876274 TCCGAAGAAGATTCAGTCTGG 57.124 47.619 0.00 0.03 37.23 3.86
613 863 3.444618 ACCGTTTTCGCTTCGTTATTC 57.555 42.857 0.00 0.00 42.58 1.75
615 865 3.364267 GGAAACCGTTTTCGCTTCGTTAT 60.364 43.478 0.00 0.00 41.97 1.89
616 866 2.032979 GGAAACCGTTTTCGCTTCGTTA 60.033 45.455 0.00 0.00 41.97 3.18
618 868 0.305617 GGAAACCGTTTTCGCTTCGT 59.694 50.000 0.00 0.00 41.97 3.85
739 1030 2.313172 GCGTCTGTGTGTCTGCCTG 61.313 63.158 0.00 0.00 0.00 4.85
740 1031 2.029666 GCGTCTGTGTGTCTGCCT 59.970 61.111 0.00 0.00 0.00 4.75
741 1032 3.406361 CGCGTCTGTGTGTCTGCC 61.406 66.667 0.00 0.00 0.00 4.85
742 1033 2.742710 TACCGCGTCTGTGTGTCTGC 62.743 60.000 4.92 0.00 0.00 4.26
763 1054 2.048127 GTCTCCCTGCGTGGTGAC 60.048 66.667 9.80 9.80 40.51 3.67
816 1390 1.269569 CGATTAGCCAGCGTGGTGATA 60.270 52.381 0.00 0.00 40.46 2.15
845 1419 6.312180 GGCTGAAAGATGGATCAATCAAAAAC 59.688 38.462 12.74 0.47 34.07 2.43
882 1463 1.525306 GGGGCCTTATGTGTACCGC 60.525 63.158 0.84 0.00 0.00 5.68
896 1477 1.452833 GCCAATCAGTCTCTGGGGC 60.453 63.158 10.31 10.31 36.83 5.80
900 1481 0.247460 TCGGTGCCAATCAGTCTCTG 59.753 55.000 0.00 0.00 0.00 3.35
913 1494 1.500396 GAATGGGACGTTTCGGTGC 59.500 57.895 0.00 0.00 0.00 5.01
924 1505 0.178947 GGGTGTTGTTGGGAATGGGA 60.179 55.000 0.00 0.00 0.00 4.37
931 1542 1.896660 CTCGGTGGGTGTTGTTGGG 60.897 63.158 0.00 0.00 0.00 4.12
1204 1836 2.515523 CCATTGCGAGCAGGAGGG 60.516 66.667 0.00 0.00 0.00 4.30
1248 1880 1.373570 GGCGGTTCTTCTCTGAATGG 58.626 55.000 0.00 0.00 0.00 3.16
1459 2134 2.365901 TAGTAGGGGGCGGTTGGG 60.366 66.667 0.00 0.00 0.00 4.12
1461 2136 0.686769 AGAGTAGTAGGGGGCGGTTG 60.687 60.000 0.00 0.00 0.00 3.77
1462 2137 0.686769 CAGAGTAGTAGGGGGCGGTT 60.687 60.000 0.00 0.00 0.00 4.44
1463 2138 1.076192 CAGAGTAGTAGGGGGCGGT 60.076 63.158 0.00 0.00 0.00 5.68
1485 2172 1.683319 GGAGGGAGAAACTGGGAATGC 60.683 57.143 0.00 0.00 0.00 3.56
1490 2177 2.269241 GCGGAGGGAGAAACTGGG 59.731 66.667 0.00 0.00 0.00 4.45
1502 2189 2.672996 CTTGGTGTTGGGGCGGAG 60.673 66.667 0.00 0.00 0.00 4.63
1572 2265 2.242965 ACATGGACATGGACATGGACAT 59.757 45.455 25.79 14.96 46.60 3.06
1574 2267 2.019249 CACATGGACATGGACATGGAC 58.981 52.381 25.79 8.88 46.60 4.02
1575 2268 1.682702 GCACATGGACATGGACATGGA 60.683 52.381 25.79 1.10 46.60 3.41
1576 2269 0.742505 GCACATGGACATGGACATGG 59.257 55.000 25.79 18.56 46.60 3.66
1578 2271 1.744798 CGAGCACATGGACATGGACAT 60.745 52.381 15.94 0.00 42.91 3.06
1579 2272 0.391528 CGAGCACATGGACATGGACA 60.392 55.000 15.94 0.00 42.91 4.02
1580 2273 0.391661 ACGAGCACATGGACATGGAC 60.392 55.000 15.94 7.76 42.91 4.02
1686 2380 8.413229 TGCTGATTAGTTAATTTTATTGGGAGC 58.587 33.333 0.00 0.00 0.00 4.70
1710 2409 8.830580 TGAGAATAGTAATAGCATTTTCAGTGC 58.169 33.333 0.00 0.00 42.81 4.40
1731 2433 6.946340 TCCAAAGAGTAATATGCACTGAGAA 58.054 36.000 0.00 0.00 0.00 2.87
1732 2434 6.544928 TCCAAAGAGTAATATGCACTGAGA 57.455 37.500 0.00 0.00 0.00 3.27
1780 2482 3.826157 GGGCATTTTGGCATAGCTATGTA 59.174 43.478 29.62 18.77 45.76 2.29
1806 2508 4.536090 TGGATCAGTGAACAAGGGTAATCT 59.464 41.667 0.00 0.00 0.00 2.40
1807 2509 4.843728 TGGATCAGTGAACAAGGGTAATC 58.156 43.478 0.00 0.00 0.00 1.75
1808 2510 4.927267 TGGATCAGTGAACAAGGGTAAT 57.073 40.909 0.00 0.00 0.00 1.89
1810 2512 3.650942 AGTTGGATCAGTGAACAAGGGTA 59.349 43.478 12.34 0.00 0.00 3.69
1811 2513 2.443255 AGTTGGATCAGTGAACAAGGGT 59.557 45.455 12.34 1.07 0.00 4.34
1836 2538 6.325286 AGTTAATTTTAGAAGGTGGTGGCAAA 59.675 34.615 0.00 0.00 0.00 3.68
1893 2595 7.172532 TGCATAATTAAAGCCTCGGTACATAAG 59.827 37.037 9.85 0.00 0.00 1.73
1927 2629 9.471702 AGAGAAATGAAATGGTTAGATTGACAT 57.528 29.630 0.00 0.00 0.00 3.06
1934 2636 7.824289 CACCAGTAGAGAAATGAAATGGTTAGA 59.176 37.037 0.00 0.00 37.70 2.10
1935 2637 7.824289 TCACCAGTAGAGAAATGAAATGGTTAG 59.176 37.037 0.00 0.00 37.70 2.34
1936 2638 7.685481 TCACCAGTAGAGAAATGAAATGGTTA 58.315 34.615 0.00 0.00 37.70 2.85
1939 2641 6.039047 CCATCACCAGTAGAGAAATGAAATGG 59.961 42.308 0.00 0.00 0.00 3.16
2031 2738 5.070446 TGCTCTGAGTTTTGGACTAAAGAGA 59.930 40.000 16.50 5.33 44.52 3.10
2119 2826 3.362304 CGCAGCAAGCTTTTGTGAATTTC 60.362 43.478 13.47 0.00 42.61 2.17
2213 2921 2.360801 TCAAACGAAAGCAAGGGGAAAG 59.639 45.455 0.00 0.00 0.00 2.62
2228 2936 5.450412 CCCATACCTGGATTGAATTCAAACG 60.450 44.000 23.91 11.59 46.37 3.60
2333 3041 5.117287 GCGTATTCGTCTTAGACATCCATTC 59.883 44.000 13.14 0.00 39.49 2.67
2334 3042 4.982916 GCGTATTCGTCTTAGACATCCATT 59.017 41.667 13.14 0.00 39.49 3.16
2335 3043 4.547532 GCGTATTCGTCTTAGACATCCAT 58.452 43.478 13.14 1.21 39.49 3.41
2336 3044 3.547413 CGCGTATTCGTCTTAGACATCCA 60.547 47.826 13.14 0.00 39.49 3.41
2337 3045 2.971915 CGCGTATTCGTCTTAGACATCC 59.028 50.000 13.14 0.00 39.49 3.51
2338 3046 2.401063 GCGCGTATTCGTCTTAGACATC 59.599 50.000 13.14 0.00 39.49 3.06
2339 3047 2.033049 AGCGCGTATTCGTCTTAGACAT 59.967 45.455 13.14 2.01 39.49 3.06
2340 3048 1.399440 AGCGCGTATTCGTCTTAGACA 59.601 47.619 13.14 0.00 39.49 3.41
2341 3049 2.102474 AGCGCGTATTCGTCTTAGAC 57.898 50.000 8.43 1.64 39.49 2.59
2342 3050 3.950087 TTAGCGCGTATTCGTCTTAGA 57.050 42.857 8.43 0.00 39.49 2.10
2343 3051 6.664978 TTAATTAGCGCGTATTCGTCTTAG 57.335 37.500 8.43 0.00 39.49 2.18
2344 3052 7.627585 AATTAATTAGCGCGTATTCGTCTTA 57.372 32.000 8.43 0.00 39.49 2.10
2345 3053 6.520792 AATTAATTAGCGCGTATTCGTCTT 57.479 33.333 8.43 0.00 39.49 3.01
2346 3054 6.199531 TGAAATTAATTAGCGCGTATTCGTCT 59.800 34.615 8.43 0.00 39.49 4.18
2347 3055 6.349426 TGAAATTAATTAGCGCGTATTCGTC 58.651 36.000 8.43 7.57 39.49 4.20
2348 3056 6.276611 TGAAATTAATTAGCGCGTATTCGT 57.723 33.333 8.43 2.22 39.49 3.85
2349 3057 6.844279 ACTTGAAATTAATTAGCGCGTATTCG 59.156 34.615 8.43 0.00 40.37 3.34
2350 3058 9.807386 ATACTTGAAATTAATTAGCGCGTATTC 57.193 29.630 8.43 6.16 0.00 1.75
2356 3064 9.878599 ACATGTATACTTGAAATTAATTAGCGC 57.121 29.630 21.87 0.00 0.00 5.92
2660 3389 3.689649 CCAGTGGCCATACTTACAAGAAC 59.310 47.826 9.72 0.00 0.00 3.01
2842 3571 2.140717 CCAGTGTCGTTGAGGGTTTAC 58.859 52.381 0.00 0.00 0.00 2.01
2843 3572 1.764134 ACCAGTGTCGTTGAGGGTTTA 59.236 47.619 0.00 0.00 0.00 2.01
2876 3605 1.399440 CAACAAGTCATCCTCATGGCG 59.601 52.381 0.00 0.00 39.86 5.69
2883 3612 4.631813 GTCTAAATCGCAACAAGTCATCCT 59.368 41.667 0.00 0.00 0.00 3.24
3048 3976 1.879380 CCAAAGCAATCGACACCTTCA 59.121 47.619 0.00 0.00 0.00 3.02
3191 4119 0.859232 CCAAGTCTCCAACACGAACG 59.141 55.000 0.00 0.00 0.00 3.95
3239 4167 4.202315 TGTTAGCCTACTTGTGAAGCTTGA 60.202 41.667 2.10 0.00 35.03 3.02
3242 4170 4.559862 ATGTTAGCCTACTTGTGAAGCT 57.440 40.909 0.00 0.00 37.58 3.74
3297 4225 4.455606 ACATAGGGCAAGCAGAATACTTC 58.544 43.478 0.00 0.00 0.00 3.01
3318 4246 9.530633 AAATAACTTCGGAAGTGTATATGAGAC 57.469 33.333 23.05 0.00 41.91 3.36
3373 4302 3.244044 TGTTGGGTTGGCTTATTCTTTGC 60.244 43.478 0.00 0.00 0.00 3.68
3541 4473 1.526917 AGCTTGGTGGTGTGCAGAC 60.527 57.895 5.20 5.20 0.00 3.51
3565 4497 5.934043 TCAGAGTATGAATGAACCACAACAG 59.066 40.000 0.00 0.00 34.02 3.16
3867 4799 7.094205 GCTTCAAGGAATGTCTGGATTTCTTTA 60.094 37.037 0.00 0.00 29.92 1.85
3882 4814 3.575687 CTGAAGGGTTTGCTTCAAGGAAT 59.424 43.478 0.00 0.00 38.84 3.01
3906 4838 4.041198 TCTTCCAGGAAAACCGTGATTACT 59.959 41.667 2.72 0.00 32.66 2.24
4071 5003 2.877786 TGCTTTCTTTGATGCGAAGACA 59.122 40.909 0.00 0.00 34.06 3.41
4206 5141 8.462016 GCTAAACCATATCAACAAAGAATGTCT 58.538 33.333 0.00 0.00 42.99 3.41
4226 5161 6.538742 TGCCATCTACACAGATAAAGCTAAAC 59.461 38.462 0.00 0.00 39.62 2.01
4230 5165 4.760530 TGCCATCTACACAGATAAAGCT 57.239 40.909 0.00 0.00 39.62 3.74
4243 5178 3.072915 CACCATACCCTCATTGCCATCTA 59.927 47.826 0.00 0.00 0.00 1.98
4280 5215 2.901042 GGGGACTCTCCGCGATTT 59.099 61.111 8.23 0.00 39.75 2.17
4584 5519 2.024918 GCCATTAGCCACATCGGTG 58.975 57.895 0.00 0.00 44.85 4.94
4651 5586 2.288457 ACCGAACACTGTGAGACTGATG 60.288 50.000 15.86 0.00 0.00 3.07
4655 5590 1.693627 AGACCGAACACTGTGAGACT 58.306 50.000 15.86 3.36 0.00 3.24
4660 5595 3.807622 ACATAACAAGACCGAACACTGTG 59.192 43.478 6.19 6.19 0.00 3.66
4674 5609 8.983702 AAAGTAGGTGGTAGAAAACATAACAA 57.016 30.769 0.00 0.00 0.00 2.83
4680 5615 6.424883 TCCAAAAAGTAGGTGGTAGAAAACA 58.575 36.000 0.00 0.00 33.88 2.83
4681 5616 6.947644 TCCAAAAAGTAGGTGGTAGAAAAC 57.052 37.500 0.00 0.00 33.88 2.43
4704 5680 5.240623 TGTTGCAAAAGGAGATCAACGTTAT 59.759 36.000 0.00 0.00 39.68 1.89
4709 5685 4.936891 AGTTGTTGCAAAAGGAGATCAAC 58.063 39.130 14.16 14.16 37.94 3.18
5013 5994 1.375098 GCTCAGGATGGCAGAAGCAC 61.375 60.000 0.00 0.00 44.61 4.40
5037 6018 8.807581 CCAACAAATGAAACTGAAGTAGAAAAC 58.192 33.333 0.00 0.00 0.00 2.43
5101 6082 1.376037 CGGGTGGAACTTCTCTGCC 60.376 63.158 0.00 0.00 36.74 4.85
5213 6203 5.767277 TTAGGAACGGAGGGAGTAAAAAT 57.233 39.130 0.00 0.00 0.00 1.82
5220 6210 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5221 6211 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5222 6212 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5223 6213 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
5277 6267 9.626045 CGCTCTAAAATATGTCTACATACATCA 57.374 33.333 4.98 0.00 41.15 3.07
5278 6268 9.627395 ACGCTCTAAAATATGTCTACATACATC 57.373 33.333 4.98 0.00 41.15 3.06
5284 6274 9.894783 GAATCTACGCTCTAAAATATGTCTACA 57.105 33.333 0.00 0.00 0.00 2.74
5285 6275 9.894783 TGAATCTACGCTCTAAAATATGTCTAC 57.105 33.333 0.00 0.00 0.00 2.59
5286 6276 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
5287 6277 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
5288 6278 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
5289 6279 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
5290 6280 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
5291 6281 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
5292 6282 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
5293 6283 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
5294 6284 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
5295 6285 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
5296 6286 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
5297 6287 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
5298 6288 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
5299 6289 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
5300 6290 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
5301 6291 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
5302 6292 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
5303 6293 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5304 6294 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5305 6295 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5306 6296 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5307 6297 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5308 6298 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5309 6299 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5310 6300 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5311 6301 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5312 6302 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
5313 6303 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5314 6304 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5315 6305 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5316 6306 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5317 6307 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5318 6308 3.368013 CCAAGTGACTACATACGGAGCAA 60.368 47.826 0.00 0.00 0.00 3.91
5319 6309 2.165641 CCAAGTGACTACATACGGAGCA 59.834 50.000 0.00 0.00 0.00 4.26
5320 6310 2.165845 ACCAAGTGACTACATACGGAGC 59.834 50.000 0.00 0.00 0.00 4.70
5321 6311 3.442625 TCACCAAGTGACTACATACGGAG 59.557 47.826 0.00 0.00 37.67 4.63
5322 6312 3.423749 TCACCAAGTGACTACATACGGA 58.576 45.455 0.00 0.00 37.67 4.69
5323 6313 3.861276 TCACCAAGTGACTACATACGG 57.139 47.619 0.00 0.00 37.67 4.02
5324 6314 6.100004 AGATTTCACCAAGTGACTACATACG 58.900 40.000 0.00 0.00 42.60 3.06
5325 6315 7.907214 AAGATTTCACCAAGTGACTACATAC 57.093 36.000 0.00 0.00 42.60 2.39
5326 6316 9.653287 CTAAAGATTTCACCAAGTGACTACATA 57.347 33.333 0.00 0.00 42.60 2.29
5327 6317 8.375506 TCTAAAGATTTCACCAAGTGACTACAT 58.624 33.333 0.00 0.00 42.60 2.29
5328 6318 7.732025 TCTAAAGATTTCACCAAGTGACTACA 58.268 34.615 0.00 0.00 42.60 2.74
5329 6319 8.603242 TTCTAAAGATTTCACCAAGTGACTAC 57.397 34.615 0.00 0.00 42.60 2.73
5330 6320 9.273016 CTTTCTAAAGATTTCACCAAGTGACTA 57.727 33.333 0.00 0.00 39.07 2.59
5331 6321 7.993183 TCTTTCTAAAGATTTCACCAAGTGACT 59.007 33.333 1.00 0.00 39.89 3.41
5332 6322 8.070769 GTCTTTCTAAAGATTTCACCAAGTGAC 58.929 37.037 8.31 0.00 45.83 3.67
5333 6323 7.993183 AGTCTTTCTAAAGATTTCACCAAGTGA 59.007 33.333 8.31 0.00 45.83 3.41
5334 6324 8.159344 AGTCTTTCTAAAGATTTCACCAAGTG 57.841 34.615 8.31 0.00 45.83 3.16
5335 6325 8.753497 AAGTCTTTCTAAAGATTTCACCAAGT 57.247 30.769 8.31 0.00 45.83 3.16
5360 6350 9.787435 ACGCTCTAAAATATGTTCCCAAATATA 57.213 29.630 0.00 0.00 0.00 0.86
5361 6351 8.691661 ACGCTCTAAAATATGTTCCCAAATAT 57.308 30.769 0.00 0.00 0.00 1.28
5362 6352 9.268268 CTACGCTCTAAAATATGTTCCCAAATA 57.732 33.333 0.00 0.00 0.00 1.40
5363 6353 7.990886 TCTACGCTCTAAAATATGTTCCCAAAT 59.009 33.333 0.00 0.00 0.00 2.32
5364 6354 7.332557 TCTACGCTCTAAAATATGTTCCCAAA 58.667 34.615 0.00 0.00 0.00 3.28
5365 6355 6.880484 TCTACGCTCTAAAATATGTTCCCAA 58.120 36.000 0.00 0.00 0.00 4.12
5366 6356 6.474140 TCTACGCTCTAAAATATGTTCCCA 57.526 37.500 0.00 0.00 0.00 4.37
5367 6357 7.656137 TGAATCTACGCTCTAAAATATGTTCCC 59.344 37.037 0.00 0.00 0.00 3.97
5368 6358 8.488764 GTGAATCTACGCTCTAAAATATGTTCC 58.511 37.037 0.00 0.00 0.00 3.62
5369 6359 9.250624 AGTGAATCTACGCTCTAAAATATGTTC 57.749 33.333 0.00 0.00 0.00 3.18
5370 6360 9.250624 GAGTGAATCTACGCTCTAAAATATGTT 57.749 33.333 0.00 0.00 42.10 2.71
5371 6361 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
5372 6362 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
5373 6363 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
5374 6364 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
5375 6365 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
5376 6366 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
5377 6367 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
5378 6368 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
5379 6369 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
5380 6370 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
5381 6371 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
5382 6372 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
5383 6373 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
5384 6374 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
5385 6375 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5386 6376 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5387 6377 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5388 6378 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5389 6379 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5390 6380 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5391 6381 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5392 6382 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5393 6383 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5394 6384 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
5395 6385 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5396 6386 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5397 6387 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5398 6388 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5399 6389 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5400 6390 3.368013 CCAAGTGACTACATACGGAGCAA 60.368 47.826 0.00 0.00 0.00 3.91
5401 6391 2.165641 CCAAGTGACTACATACGGAGCA 59.834 50.000 0.00 0.00 0.00 4.26
5402 6392 2.165845 ACCAAGTGACTACATACGGAGC 59.834 50.000 0.00 0.00 0.00 4.70
5403 6393 3.442625 TCACCAAGTGACTACATACGGAG 59.557 47.826 0.00 0.00 37.67 4.63
5404 6394 3.423749 TCACCAAGTGACTACATACGGA 58.576 45.455 0.00 0.00 37.67 4.69
5405 6395 3.861276 TCACCAAGTGACTACATACGG 57.139 47.619 0.00 0.00 37.67 4.02
5406 6396 6.100004 AGATTTCACCAAGTGACTACATACG 58.900 40.000 0.00 0.00 42.60 3.06
5407 6397 7.907214 AAGATTTCACCAAGTGACTACATAC 57.093 36.000 0.00 0.00 42.60 2.39
5408 6398 9.653287 CTAAAGATTTCACCAAGTGACTACATA 57.347 33.333 0.00 0.00 42.60 2.29
5409 6399 8.375506 TCTAAAGATTTCACCAAGTGACTACAT 58.624 33.333 0.00 0.00 42.60 2.29
5410 6400 7.732025 TCTAAAGATTTCACCAAGTGACTACA 58.268 34.615 0.00 0.00 42.60 2.74
5411 6401 8.603242 TTCTAAAGATTTCACCAAGTGACTAC 57.397 34.615 0.00 0.00 42.60 2.73
5412 6402 9.273016 CTTTCTAAAGATTTCACCAAGTGACTA 57.727 33.333 0.00 0.00 39.07 2.59
5413 6403 7.993183 TCTTTCTAAAGATTTCACCAAGTGACT 59.007 33.333 1.00 0.00 39.89 3.41
5414 6404 8.070769 GTCTTTCTAAAGATTTCACCAAGTGAC 58.929 37.037 8.31 0.00 45.83 3.67
5415 6405 7.993183 AGTCTTTCTAAAGATTTCACCAAGTGA 59.007 33.333 8.31 0.00 45.83 3.41
5416 6406 8.159344 AGTCTTTCTAAAGATTTCACCAAGTG 57.841 34.615 8.31 0.00 45.83 3.16
5417 6407 8.753497 AAGTCTTTCTAAAGATTTCACCAAGT 57.247 30.769 8.31 0.00 45.83 3.16
5430 6420 9.169592 CCGTTCCCAAATATAAGTCTTTCTAAA 57.830 33.333 0.00 0.00 0.00 1.85
5431 6421 8.542080 TCCGTTCCCAAATATAAGTCTTTCTAA 58.458 33.333 0.00 0.00 0.00 2.10
5432 6422 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
5433 6423 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
5434 6424 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
5435 6425 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
5436 6426 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
5437 6427 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
5438 6428 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
5439 6429 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
5440 6430 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
5441 6431 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
5442 6432 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
5443 6433 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5444 6434 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5445 6435 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
5446 6436 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5447 6437 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
5448 6438 2.605257 CATATACTCCCTCCGTTCCCA 58.395 52.381 0.00 0.00 0.00 4.37
5449 6439 1.275573 GCATATACTCCCTCCGTTCCC 59.724 57.143 0.00 0.00 0.00 3.97
5450 6440 2.249139 AGCATATACTCCCTCCGTTCC 58.751 52.381 0.00 0.00 0.00 3.62
5451 6441 4.308265 GAAAGCATATACTCCCTCCGTTC 58.692 47.826 0.00 0.00 0.00 3.95
5452 6442 3.243771 CGAAAGCATATACTCCCTCCGTT 60.244 47.826 0.00 0.00 0.00 4.44
5453 6443 2.296471 CGAAAGCATATACTCCCTCCGT 59.704 50.000 0.00 0.00 0.00 4.69
5454 6444 2.947852 CGAAAGCATATACTCCCTCCG 58.052 52.381 0.00 0.00 0.00 4.63
5469 6459 8.660373 AGTAGTAATTTGATTTCTCAGCGAAAG 58.340 33.333 0.00 0.00 44.29 2.62
5474 6464 7.051000 AGGGAGTAGTAATTTGATTTCTCAGC 58.949 38.462 0.00 0.00 31.68 4.26
5477 6469 6.702282 CGGAGGGAGTAGTAATTTGATTTCTC 59.298 42.308 0.00 0.00 0.00 2.87
5492 6484 6.384886 ACTTATATTTGGAAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
5493 6485 5.191124 ACTTATATTTGGAAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
5494 6486 5.681639 ACTTATATTTGGAAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5495 6487 5.427481 AGACTTATATTTGGAAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5496 6488 5.681639 AGACTTATATTTGGAAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5497 6489 7.553044 AGAAAGACTTATATTTGGAAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5498 6490 8.494016 AGAAAGACTTATATTTGGAAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5499 6491 9.595823 CTAGAAAGACTTATATTTGGAAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5500 6492 9.595823 TCTAGAAAGACTTATATTTGGAAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5512 6504 9.507329 TTTGTTGCAATCTCTAGAAAGACTTAT 57.493 29.630 0.59 0.00 0.00 1.73
5513 6505 8.902540 TTTGTTGCAATCTCTAGAAAGACTTA 57.097 30.769 0.59 0.00 0.00 2.24
5514 6506 7.807977 TTTGTTGCAATCTCTAGAAAGACTT 57.192 32.000 0.59 0.00 0.00 3.01
5515 6507 7.663081 TCATTTGTTGCAATCTCTAGAAAGACT 59.337 33.333 0.59 0.00 0.00 3.24
5516 6508 7.748241 GTCATTTGTTGCAATCTCTAGAAAGAC 59.252 37.037 0.59 0.23 0.00 3.01
5517 6509 7.663081 AGTCATTTGTTGCAATCTCTAGAAAGA 59.337 33.333 0.59 0.00 0.00 2.52
5518 6510 7.814642 AGTCATTTGTTGCAATCTCTAGAAAG 58.185 34.615 0.59 0.00 0.00 2.62
5519 6511 7.750229 AGTCATTTGTTGCAATCTCTAGAAA 57.250 32.000 0.59 0.00 0.00 2.52
5520 6512 7.877612 TGTAGTCATTTGTTGCAATCTCTAGAA 59.122 33.333 0.59 0.00 0.00 2.10
5521 6513 7.386059 TGTAGTCATTTGTTGCAATCTCTAGA 58.614 34.615 0.59 0.00 0.00 2.43
5522 6514 7.601073 TGTAGTCATTTGTTGCAATCTCTAG 57.399 36.000 0.59 0.00 0.00 2.43
5523 6515 9.098355 GTATGTAGTCATTTGTTGCAATCTCTA 57.902 33.333 0.59 0.00 35.70 2.43
5524 6516 7.201556 CGTATGTAGTCATTTGTTGCAATCTCT 60.202 37.037 0.59 0.00 35.70 3.10
5525 6517 6.901887 CGTATGTAGTCATTTGTTGCAATCTC 59.098 38.462 0.59 0.00 35.70 2.75
5526 6518 6.183360 CCGTATGTAGTCATTTGTTGCAATCT 60.183 38.462 0.59 0.00 35.70 2.40
5527 6519 5.965334 CCGTATGTAGTCATTTGTTGCAATC 59.035 40.000 0.59 0.00 35.70 2.67
5528 6520 5.645929 TCCGTATGTAGTCATTTGTTGCAAT 59.354 36.000 0.59 0.00 35.70 3.56
5529 6521 4.998033 TCCGTATGTAGTCATTTGTTGCAA 59.002 37.500 0.00 0.00 35.70 4.08
5530 6522 4.570930 TCCGTATGTAGTCATTTGTTGCA 58.429 39.130 0.00 0.00 35.70 4.08
5531 6523 4.494199 GCTCCGTATGTAGTCATTTGTTGC 60.494 45.833 0.00 0.00 35.70 4.17
5532 6524 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
5533 6525 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
5534 6526 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
5535 6527 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
5536 6528 6.597672 TCAATTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
5537 6529 6.112734 TCAATTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
5538 6530 5.670485 TCAATTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
5539 6531 5.079689 TCAATTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5540 6532 6.257849 TCATTCAATTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
5541 6533 6.112734 TCATTCAATTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
5542 6534 6.603237 TCATTCAATTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
5543 6535 6.993786 TTCATTCAATTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
5544 6536 5.895636 TTCATTCAATTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
5545 6537 6.732154 AGATTCATTCAATTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
5546 6538 6.949352 AGATTCATTCAATTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
5547 6539 6.821160 TGTAGATTCATTCAATTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
5548 6540 5.647658 TGTAGATTCATTCAATTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
5549 6541 6.122850 TGTAGATTCATTCAATTTGCTCCG 57.877 37.500 0.00 0.00 0.00 4.63
5550 6542 8.937634 AAATGTAGATTCATTCAATTTGCTCC 57.062 30.769 0.00 0.00 37.09 4.70
5626 6618 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5627 6619 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5628 6620 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5629 6621 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5630 6622 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5631 6623 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5632 6624 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5633 6625 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
5634 6626 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
5635 6627 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5636 6628 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5637 6629 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5638 6630 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5639 6631 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5640 6632 2.423947 GGATGTACTCCCTCCGTTCCTA 60.424 54.545 0.00 0.00 38.19 2.94
5641 6633 1.688627 GGATGTACTCCCTCCGTTCCT 60.689 57.143 0.00 0.00 38.19 3.36
5642 6634 0.751452 GGATGTACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 38.19 3.62
5651 6643 2.158445 TCTCCTAGCTGGGATGTACTCC 60.158 54.545 20.41 0.00 44.11 3.85
5652 6644 3.231207 TCTCCTAGCTGGGATGTACTC 57.769 52.381 20.41 0.00 34.56 2.59
5653 6645 3.689872 TTCTCCTAGCTGGGATGTACT 57.310 47.619 20.41 0.00 34.56 2.73
5654 6646 4.503991 CCAATTCTCCTAGCTGGGATGTAC 60.504 50.000 20.41 0.00 34.56 2.90
5773 6770 5.091261 AGTTCATCTAGCCTACAAACTGG 57.909 43.478 0.00 0.00 0.00 4.00
5775 6772 6.342111 GCTAAGTTCATCTAGCCTACAAACT 58.658 40.000 0.00 0.00 0.00 2.66
5776 6773 6.591313 GCTAAGTTCATCTAGCCTACAAAC 57.409 41.667 0.00 0.00 0.00 2.93
5789 6786 5.148651 ACGTCTTTGTAGGCTAAGTTCAT 57.851 39.130 0.00 0.00 0.00 2.57
5791 6788 5.228665 AGAACGTCTTTGTAGGCTAAGTTC 58.771 41.667 0.00 0.00 0.00 3.01
5793 6790 4.868314 AGAACGTCTTTGTAGGCTAAGT 57.132 40.909 0.00 0.00 0.00 2.24
5807 6809 5.686397 CCTCCGTCTCAAAATATAGAACGTC 59.314 44.000 0.00 0.00 0.00 4.34
5812 6814 4.649674 ACTGCCTCCGTCTCAAAATATAGA 59.350 41.667 0.00 0.00 0.00 1.98
5813 6815 4.950050 ACTGCCTCCGTCTCAAAATATAG 58.050 43.478 0.00 0.00 0.00 1.31
5862 6871 0.827368 CCTCCTCTCTTTCTTCCCCG 59.173 60.000 0.00 0.00 0.00 5.73
5903 6920 1.461127 GCGATTTCACCTGTCACTCAC 59.539 52.381 0.00 0.00 0.00 3.51
5907 6924 0.798776 CCAGCGATTTCACCTGTCAC 59.201 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.