Multiple sequence alignment - TraesCS7D01G322400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G322400 chr7D 100.000 2586 0 0 1 2586 412660542 412663127 0.000000e+00 4776.0
1 TraesCS7D01G322400 chr7A 92.655 776 33 10 857 1616 473904350 473905117 0.000000e+00 1096.0
2 TraesCS7D01G322400 chr7A 96.000 75 3 0 1 75 482531814 482531740 3.490000e-24 122.0
3 TraesCS7D01G322400 chr5D 87.307 906 107 4 1683 2586 87187671 87188570 0.000000e+00 1029.0
4 TraesCS7D01G322400 chr1D 91.076 762 67 1 1826 2586 74923804 74923043 0.000000e+00 1029.0
5 TraesCS7D01G322400 chr1D 86.424 906 121 2 1683 2586 43262703 43261798 0.000000e+00 990.0
6 TraesCS7D01G322400 chr1D 81.236 906 166 4 1683 2586 483401041 483401944 0.000000e+00 728.0
7 TraesCS7D01G322400 chr1D 84.462 251 19 14 312 553 176912820 176913059 2.000000e-56 230.0
8 TraesCS7D01G322400 chr1D 94.937 79 4 0 742 820 80314145 80314223 9.720000e-25 124.0
9 TraesCS7D01G322400 chr1D 96.000 75 3 0 1 75 93836405 93836479 3.490000e-24 122.0
10 TraesCS7D01G322400 chrUn 86.424 906 121 2 1683 2586 250769037 250769942 0.000000e+00 990.0
11 TraesCS7D01G322400 chr2D 86.424 906 121 2 1683 2586 4500445 4501350 0.000000e+00 990.0
12 TraesCS7D01G322400 chr6A 84.010 838 128 6 1752 2586 337231741 337230907 0.000000e+00 800.0
13 TraesCS7D01G322400 chr6A 86.989 269 21 4 288 549 602226418 602226157 9.050000e-75 291.0
14 TraesCS7D01G322400 chr6A 88.479 217 16 6 621 832 602225922 602225710 1.190000e-63 254.0
15 TraesCS7D01G322400 chr6B 82.379 908 154 6 1682 2586 279102705 279101801 0.000000e+00 785.0
16 TraesCS7D01G322400 chr6B 84.740 308 29 9 288 586 536849362 536849064 2.520000e-75 292.0
17 TraesCS7D01G322400 chr6B 96.000 50 1 1 356 404 474652322 474652371 2.130000e-11 80.5
18 TraesCS7D01G322400 chr4D 90.909 539 32 7 288 820 353418825 353419352 0.000000e+00 708.0
19 TraesCS7D01G322400 chr4D 86.704 534 46 12 288 820 194081243 194080734 1.040000e-158 569.0
20 TraesCS7D01G322400 chr4D 81.237 469 43 19 374 820 376308357 376308802 1.150000e-88 337.0
21 TraesCS7D01G322400 chr4D 90.868 219 20 0 74 292 231932272 231932490 7.000000e-76 294.0
22 TraesCS7D01G322400 chr4D 79.758 331 33 14 505 820 310560908 310561219 2.610000e-50 209.0
23 TraesCS7D01G322400 chr5A 80.942 892 162 8 1683 2570 72332954 72333841 0.000000e+00 699.0
24 TraesCS7D01G322400 chr7B 92.237 219 14 1 74 292 20343241 20343026 8.990000e-80 307.0
25 TraesCS7D01G322400 chr7B 86.441 236 17 12 596 820 712491841 712492072 7.150000e-61 244.0
26 TraesCS7D01G322400 chr7B 82.270 282 33 5 288 558 712491556 712491831 7.200000e-56 228.0
27 TraesCS7D01G322400 chr5B 90.435 230 15 3 74 299 117962770 117962996 1.950000e-76 296.0
28 TraesCS7D01G322400 chr5B 94.937 79 4 0 742 820 386868312 386868390 9.720000e-25 124.0
29 TraesCS7D01G322400 chr5B 81.905 105 12 3 626 726 192963802 192963701 5.930000e-12 82.4
30 TraesCS7D01G322400 chr4B 90.868 219 20 0 74 292 362883668 362883886 7.000000e-76 294.0
31 TraesCS7D01G322400 chr4B 89.130 230 21 2 74 303 240110366 240110591 1.510000e-72 283.0
32 TraesCS7D01G322400 chr4B 88.938 226 23 2 74 299 83772384 83772607 7.050000e-71 278.0
33 TraesCS7D01G322400 chr4B 84.030 263 22 10 1 263 248833578 248833820 4.300000e-58 235.0
34 TraesCS7D01G322400 chr4B 83.267 251 23 9 469 708 305510236 305509994 2.020000e-51 213.0
35 TraesCS7D01G322400 chr4B 94.595 74 3 1 1 74 134118308 134118236 2.100000e-21 113.0
36 TraesCS7D01G322400 chr4B 93.243 74 5 0 1 74 574527412 574527485 2.720000e-20 110.0
37 TraesCS7D01G322400 chr4B 90.164 61 6 0 288 348 305510295 305510235 2.130000e-11 80.5
38 TraesCS7D01G322400 chr3B 89.954 219 22 0 74 292 262256281 262256063 1.510000e-72 283.0
39 TraesCS7D01G322400 chr2A 89.954 219 22 0 74 292 271870237 271870019 1.510000e-72 283.0
40 TraesCS7D01G322400 chr1B 89.954 219 22 0 74 292 573738738 573738520 1.510000e-72 283.0
41 TraesCS7D01G322400 chr6D 83.819 309 29 14 1 292 256249507 256249811 9.120000e-70 274.0
42 TraesCS7D01G322400 chr6D 83.495 309 31 13 1 292 73838166 73838471 1.180000e-68 270.0
43 TraesCS7D01G322400 chr6D 93.750 80 4 1 742 821 239528986 239529064 4.520000e-23 119.0
44 TraesCS7D01G322400 chr4A 81.279 219 31 6 511 726 671916929 671916718 4.430000e-38 169.0
45 TraesCS7D01G322400 chr4A 94.186 86 5 0 505 590 302652433 302652518 5.810000e-27 132.0
46 TraesCS7D01G322400 chr4A 91.667 48 4 0 531 578 302652529 302652576 1.660000e-07 67.6
47 TraesCS7D01G322400 chr2B 96.000 75 3 0 1 75 189500508 189500434 3.490000e-24 122.0
48 TraesCS7D01G322400 chr2B 82.517 143 16 7 588 726 296487919 296488056 1.630000e-22 117.0
49 TraesCS7D01G322400 chr2B 94.595 74 3 1 1 74 220960224 220960296 2.100000e-21 113.0
50 TraesCS7D01G322400 chr2B 94.444 36 2 0 692 727 326500643 326500678 3.590000e-04 56.5
51 TraesCS7D01G322400 chr1A 88.298 94 11 0 742 835 253898128 253898035 2.100000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G322400 chr7D 412660542 412663127 2585 False 4776.0 4776 100.0000 1 2586 1 chr7D.!!$F1 2585
1 TraesCS7D01G322400 chr7A 473904350 473905117 767 False 1096.0 1096 92.6550 857 1616 1 chr7A.!!$F1 759
2 TraesCS7D01G322400 chr5D 87187671 87188570 899 False 1029.0 1029 87.3070 1683 2586 1 chr5D.!!$F1 903
3 TraesCS7D01G322400 chr1D 74923043 74923804 761 True 1029.0 1029 91.0760 1826 2586 1 chr1D.!!$R2 760
4 TraesCS7D01G322400 chr1D 43261798 43262703 905 True 990.0 990 86.4240 1683 2586 1 chr1D.!!$R1 903
5 TraesCS7D01G322400 chr1D 483401041 483401944 903 False 728.0 728 81.2360 1683 2586 1 chr1D.!!$F4 903
6 TraesCS7D01G322400 chrUn 250769037 250769942 905 False 990.0 990 86.4240 1683 2586 1 chrUn.!!$F1 903
7 TraesCS7D01G322400 chr2D 4500445 4501350 905 False 990.0 990 86.4240 1683 2586 1 chr2D.!!$F1 903
8 TraesCS7D01G322400 chr6A 337230907 337231741 834 True 800.0 800 84.0100 1752 2586 1 chr6A.!!$R1 834
9 TraesCS7D01G322400 chr6A 602225710 602226418 708 True 272.5 291 87.7340 288 832 2 chr6A.!!$R2 544
10 TraesCS7D01G322400 chr6B 279101801 279102705 904 True 785.0 785 82.3790 1682 2586 1 chr6B.!!$R1 904
11 TraesCS7D01G322400 chr4D 353418825 353419352 527 False 708.0 708 90.9090 288 820 1 chr4D.!!$F3 532
12 TraesCS7D01G322400 chr4D 194080734 194081243 509 True 569.0 569 86.7040 288 820 1 chr4D.!!$R1 532
13 TraesCS7D01G322400 chr5A 72332954 72333841 887 False 699.0 699 80.9420 1683 2570 1 chr5A.!!$F1 887
14 TraesCS7D01G322400 chr7B 712491556 712492072 516 False 236.0 244 84.3555 288 820 2 chr7B.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 1014 0.31716 CAACGAGTCCACTAGTGCCA 59.683 55.0 17.86 2.9 32.16 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2322 0.03309 GGTGGAGGACGTTCGTTCTT 59.967 55.0 7.59 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.546428 TGTTTTGGTTTGAAATACTCCCAA 57.454 33.333 0.00 0.00 0.00 4.12
24 25 6.578023 TGTTTTGGTTTGAAATACTCCCAAG 58.422 36.000 0.00 0.00 33.82 3.61
25 26 6.155393 TGTTTTGGTTTGAAATACTCCCAAGT 59.845 34.615 0.00 0.00 39.66 3.16
26 27 6.800072 TTTGGTTTGAAATACTCCCAAGTT 57.200 33.333 0.00 0.00 36.92 2.66
27 28 6.399639 TTGGTTTGAAATACTCCCAAGTTC 57.600 37.500 0.00 0.00 36.92 3.01
28 29 4.830600 TGGTTTGAAATACTCCCAAGTTCC 59.169 41.667 0.00 0.00 36.92 3.62
29 30 5.077564 GGTTTGAAATACTCCCAAGTTCCT 58.922 41.667 0.00 0.00 36.92 3.36
30 31 5.183331 GGTTTGAAATACTCCCAAGTTCCTC 59.817 44.000 0.00 0.00 36.92 3.71
31 32 4.569719 TGAAATACTCCCAAGTTCCTCC 57.430 45.455 0.00 0.00 36.92 4.30
32 33 4.175962 TGAAATACTCCCAAGTTCCTCCT 58.824 43.478 0.00 0.00 36.92 3.69
33 34 5.347124 TGAAATACTCCCAAGTTCCTCCTA 58.653 41.667 0.00 0.00 36.92 2.94
34 35 5.970640 TGAAATACTCCCAAGTTCCTCCTAT 59.029 40.000 0.00 0.00 36.92 2.57
35 36 6.447084 TGAAATACTCCCAAGTTCCTCCTATT 59.553 38.462 0.00 0.00 36.92 1.73
36 37 6.910259 AATACTCCCAAGTTCCTCCTATTT 57.090 37.500 0.00 0.00 36.92 1.40
37 38 4.576330 ACTCCCAAGTTCCTCCTATTTG 57.424 45.455 0.00 0.00 28.74 2.32
38 39 4.175962 ACTCCCAAGTTCCTCCTATTTGA 58.824 43.478 0.00 0.00 28.74 2.69
39 40 4.790790 ACTCCCAAGTTCCTCCTATTTGAT 59.209 41.667 0.00 0.00 28.74 2.57
40 41 5.254032 ACTCCCAAGTTCCTCCTATTTGATT 59.746 40.000 0.00 0.00 28.74 2.57
41 42 5.509498 TCCCAAGTTCCTCCTATTTGATTG 58.491 41.667 0.00 0.00 0.00 2.67
42 43 5.252863 TCCCAAGTTCCTCCTATTTGATTGA 59.747 40.000 0.00 0.00 0.00 2.57
43 44 6.068853 TCCCAAGTTCCTCCTATTTGATTGAT 60.069 38.462 0.00 0.00 0.00 2.57
44 45 6.608808 CCCAAGTTCCTCCTATTTGATTGATT 59.391 38.462 0.00 0.00 0.00 2.57
45 46 7.201857 CCCAAGTTCCTCCTATTTGATTGATTC 60.202 40.741 0.00 0.00 0.00 2.52
46 47 7.340232 CCAAGTTCCTCCTATTTGATTGATTCA 59.660 37.037 0.00 0.00 0.00 2.57
47 48 8.910944 CAAGTTCCTCCTATTTGATTGATTCAT 58.089 33.333 0.00 0.00 33.34 2.57
48 49 8.688747 AGTTCCTCCTATTTGATTGATTCATC 57.311 34.615 0.00 0.00 33.34 2.92
49 50 8.501070 AGTTCCTCCTATTTGATTGATTCATCT 58.499 33.333 0.00 0.00 33.34 2.90
50 51 8.566260 GTTCCTCCTATTTGATTGATTCATCTG 58.434 37.037 0.00 0.00 33.34 2.90
51 52 8.037723 TCCTCCTATTTGATTGATTCATCTGA 57.962 34.615 0.00 0.00 33.34 3.27
52 53 8.666821 TCCTCCTATTTGATTGATTCATCTGAT 58.333 33.333 0.00 0.00 33.34 2.90
53 54 8.731605 CCTCCTATTTGATTGATTCATCTGATG 58.268 37.037 11.42 11.42 33.34 3.07
54 55 8.631480 TCCTATTTGATTGATTCATCTGATGG 57.369 34.615 17.06 0.00 33.34 3.51
55 56 8.442374 TCCTATTTGATTGATTCATCTGATGGA 58.558 33.333 17.06 9.56 33.34 3.41
56 57 8.512956 CCTATTTGATTGATTCATCTGATGGAC 58.487 37.037 17.06 9.50 33.34 4.02
57 58 7.891498 ATTTGATTGATTCATCTGATGGACA 57.109 32.000 17.06 11.65 33.34 4.02
58 59 7.891498 TTTGATTGATTCATCTGATGGACAT 57.109 32.000 17.06 7.54 33.34 3.06
59 60 7.891498 TTGATTGATTCATCTGATGGACATT 57.109 32.000 17.06 10.73 33.34 2.71
60 61 8.983702 TTGATTGATTCATCTGATGGACATTA 57.016 30.769 17.06 2.60 33.34 1.90
61 62 9.582648 TTGATTGATTCATCTGATGGACATTAT 57.417 29.630 17.06 7.02 33.34 1.28
62 63 9.010029 TGATTGATTCATCTGATGGACATTATG 57.990 33.333 17.06 0.00 0.00 1.90
63 64 8.935614 ATTGATTCATCTGATGGACATTATGT 57.064 30.769 17.06 0.00 0.00 2.29
64 65 7.974482 TGATTCATCTGATGGACATTATGTC 57.026 36.000 16.30 16.30 46.23 3.06
77 78 6.882610 GACATTATGTCAGGCAAATATCCA 57.117 37.500 19.23 0.00 46.22 3.41
78 79 7.458409 GACATTATGTCAGGCAAATATCCAT 57.542 36.000 19.23 0.00 46.22 3.41
79 80 8.565896 GACATTATGTCAGGCAAATATCCATA 57.434 34.615 19.23 0.00 46.22 2.74
80 81 8.340618 ACATTATGTCAGGCAAATATCCATAC 57.659 34.615 0.00 0.00 0.00 2.39
81 82 7.944000 ACATTATGTCAGGCAAATATCCATACA 59.056 33.333 0.00 0.00 0.00 2.29
82 83 8.795513 CATTATGTCAGGCAAATATCCATACAA 58.204 33.333 0.00 0.00 0.00 2.41
83 84 6.889301 ATGTCAGGCAAATATCCATACAAG 57.111 37.500 0.00 0.00 0.00 3.16
84 85 5.754782 TGTCAGGCAAATATCCATACAAGT 58.245 37.500 0.00 0.00 0.00 3.16
85 86 5.822519 TGTCAGGCAAATATCCATACAAGTC 59.177 40.000 0.00 0.00 0.00 3.01
86 87 5.050091 GTCAGGCAAATATCCATACAAGTCG 60.050 44.000 0.00 0.00 0.00 4.18
87 88 5.056480 CAGGCAAATATCCATACAAGTCGA 58.944 41.667 0.00 0.00 0.00 4.20
88 89 5.178252 CAGGCAAATATCCATACAAGTCGAG 59.822 44.000 0.00 0.00 0.00 4.04
89 90 5.070446 AGGCAAATATCCATACAAGTCGAGA 59.930 40.000 0.00 0.00 0.00 4.04
90 91 5.934625 GGCAAATATCCATACAAGTCGAGAT 59.065 40.000 0.00 0.00 0.00 2.75
91 92 7.039011 AGGCAAATATCCATACAAGTCGAGATA 60.039 37.037 0.00 0.00 0.00 1.98
92 93 7.766278 GGCAAATATCCATACAAGTCGAGATAT 59.234 37.037 0.00 0.00 0.00 1.63
93 94 9.155975 GCAAATATCCATACAAGTCGAGATATT 57.844 33.333 6.50 6.50 38.11 1.28
157 158 8.624776 ACTATTATTCTTCTGCTAATTGGTTGC 58.375 33.333 0.00 0.00 0.00 4.17
158 159 7.651027 ATTATTCTTCTGCTAATTGGTTGCT 57.349 32.000 0.00 0.00 0.00 3.91
159 160 5.990120 ATTCTTCTGCTAATTGGTTGCTT 57.010 34.783 0.00 0.00 0.00 3.91
160 161 4.771590 TCTTCTGCTAATTGGTTGCTTG 57.228 40.909 0.00 0.00 0.00 4.01
161 162 4.397420 TCTTCTGCTAATTGGTTGCTTGA 58.603 39.130 0.00 0.00 0.00 3.02
162 163 4.216257 TCTTCTGCTAATTGGTTGCTTGAC 59.784 41.667 0.00 0.00 0.00 3.18
163 164 2.819608 TCTGCTAATTGGTTGCTTGACC 59.180 45.455 0.00 0.00 40.23 4.02
172 173 3.561143 TGGTTGCTTGACCAAATGTACT 58.439 40.909 4.95 0.00 46.33 2.73
173 174 3.317711 TGGTTGCTTGACCAAATGTACTG 59.682 43.478 4.95 0.00 46.33 2.74
174 175 3.317993 GGTTGCTTGACCAAATGTACTGT 59.682 43.478 0.00 0.00 39.57 3.55
175 176 4.517453 GGTTGCTTGACCAAATGTACTGTA 59.483 41.667 0.00 0.00 39.57 2.74
176 177 5.334879 GGTTGCTTGACCAAATGTACTGTAG 60.335 44.000 0.00 0.00 39.57 2.74
177 178 5.222079 TGCTTGACCAAATGTACTGTAGA 57.778 39.130 0.00 0.00 0.00 2.59
178 179 5.804639 TGCTTGACCAAATGTACTGTAGAT 58.195 37.500 0.00 0.00 0.00 1.98
179 180 5.643348 TGCTTGACCAAATGTACTGTAGATG 59.357 40.000 0.00 0.00 0.00 2.90
180 181 5.874810 GCTTGACCAAATGTACTGTAGATGA 59.125 40.000 0.00 0.00 0.00 2.92
181 182 6.540189 GCTTGACCAAATGTACTGTAGATGAT 59.460 38.462 0.00 0.00 0.00 2.45
182 183 7.254590 GCTTGACCAAATGTACTGTAGATGATC 60.255 40.741 0.00 0.00 0.00 2.92
183 184 7.423844 TGACCAAATGTACTGTAGATGATCT 57.576 36.000 0.00 0.00 0.00 2.75
184 185 7.851228 TGACCAAATGTACTGTAGATGATCTT 58.149 34.615 0.00 0.00 0.00 2.40
185 186 8.977412 TGACCAAATGTACTGTAGATGATCTTA 58.023 33.333 0.00 0.00 0.00 2.10
186 187 9.988815 GACCAAATGTACTGTAGATGATCTTAT 57.011 33.333 0.00 0.00 0.00 1.73
227 228 8.193953 AGGGAAATGTTATTGTTCTTCATTGT 57.806 30.769 0.00 0.00 0.00 2.71
228 229 9.308000 AGGGAAATGTTATTGTTCTTCATTGTA 57.692 29.630 0.00 0.00 0.00 2.41
229 230 9.573133 GGGAAATGTTATTGTTCTTCATTGTAG 57.427 33.333 0.00 0.00 0.00 2.74
232 233 9.912634 AAATGTTATTGTTCTTCATTGTAGTGG 57.087 29.630 0.00 0.00 0.00 4.00
233 234 8.862325 ATGTTATTGTTCTTCATTGTAGTGGA 57.138 30.769 0.00 0.00 0.00 4.02
234 235 8.862325 TGTTATTGTTCTTCATTGTAGTGGAT 57.138 30.769 0.00 0.00 0.00 3.41
235 236 8.729756 TGTTATTGTTCTTCATTGTAGTGGATG 58.270 33.333 0.00 0.00 0.00 3.51
236 237 8.946085 GTTATTGTTCTTCATTGTAGTGGATGA 58.054 33.333 0.00 0.00 0.00 2.92
237 238 9.685276 TTATTGTTCTTCATTGTAGTGGATGAT 57.315 29.630 0.00 0.00 32.73 2.45
239 240 9.857656 ATTGTTCTTCATTGTAGTGGATGATAT 57.142 29.630 0.00 0.00 32.73 1.63
240 241 8.893219 TGTTCTTCATTGTAGTGGATGATATC 57.107 34.615 0.00 0.00 32.73 1.63
257 258 7.819521 ATGATATCCATCCCAGTTATTGAGA 57.180 36.000 0.00 0.00 0.00 3.27
258 259 7.819521 TGATATCCATCCCAGTTATTGAGAT 57.180 36.000 0.00 0.00 0.00 2.75
259 260 7.627311 TGATATCCATCCCAGTTATTGAGATG 58.373 38.462 0.00 0.00 40.60 2.90
260 261 7.458806 TGATATCCATCCCAGTTATTGAGATGA 59.541 37.037 1.12 0.00 42.79 2.92
261 262 6.715350 ATCCATCCCAGTTATTGAGATGAT 57.285 37.500 1.12 0.00 42.79 2.45
262 263 5.872963 TCCATCCCAGTTATTGAGATGATG 58.127 41.667 1.12 0.00 42.79 3.07
263 264 4.458295 CCATCCCAGTTATTGAGATGATGC 59.542 45.833 1.12 0.00 42.79 3.91
264 265 4.776435 TCCCAGTTATTGAGATGATGCA 57.224 40.909 0.00 0.00 0.00 3.96
265 266 5.114764 TCCCAGTTATTGAGATGATGCAA 57.885 39.130 0.00 0.00 0.00 4.08
266 267 5.128205 TCCCAGTTATTGAGATGATGCAAG 58.872 41.667 0.00 0.00 0.00 4.01
267 268 4.885907 CCCAGTTATTGAGATGATGCAAGT 59.114 41.667 0.00 0.00 0.00 3.16
268 269 6.057533 CCCAGTTATTGAGATGATGCAAGTA 58.942 40.000 0.00 0.00 0.00 2.24
269 270 6.017605 CCCAGTTATTGAGATGATGCAAGTAC 60.018 42.308 0.00 0.00 0.00 2.73
270 271 6.765036 CCAGTTATTGAGATGATGCAAGTACT 59.235 38.462 0.00 0.00 0.00 2.73
271 272 7.928167 CCAGTTATTGAGATGATGCAAGTACTA 59.072 37.037 0.00 0.00 0.00 1.82
272 273 8.759641 CAGTTATTGAGATGATGCAAGTACTAC 58.240 37.037 0.00 0.00 0.00 2.73
273 274 7.928706 AGTTATTGAGATGATGCAAGTACTACC 59.071 37.037 0.00 0.00 0.00 3.18
274 275 4.307443 TGAGATGATGCAAGTACTACCG 57.693 45.455 0.00 0.00 0.00 4.02
275 276 3.951680 TGAGATGATGCAAGTACTACCGA 59.048 43.478 0.00 0.00 0.00 4.69
276 277 4.584743 TGAGATGATGCAAGTACTACCGAT 59.415 41.667 0.00 0.00 0.00 4.18
277 278 4.876125 AGATGATGCAAGTACTACCGATG 58.124 43.478 0.00 0.00 0.00 3.84
278 279 4.584743 AGATGATGCAAGTACTACCGATGA 59.415 41.667 0.00 0.00 0.00 2.92
279 280 4.937201 TGATGCAAGTACTACCGATGAT 57.063 40.909 0.00 0.00 0.00 2.45
280 281 5.276461 TGATGCAAGTACTACCGATGATT 57.724 39.130 0.00 0.00 0.00 2.57
281 282 5.670485 TGATGCAAGTACTACCGATGATTT 58.330 37.500 0.00 0.00 0.00 2.17
282 283 6.112734 TGATGCAAGTACTACCGATGATTTT 58.887 36.000 0.00 0.00 0.00 1.82
283 284 6.597672 TGATGCAAGTACTACCGATGATTTTT 59.402 34.615 0.00 0.00 0.00 1.94
284 285 6.176975 TGCAAGTACTACCGATGATTTTTG 57.823 37.500 0.00 0.00 0.00 2.44
285 286 5.703592 TGCAAGTACTACCGATGATTTTTGT 59.296 36.000 0.00 0.00 0.00 2.83
286 287 6.128391 TGCAAGTACTACCGATGATTTTTGTC 60.128 38.462 0.00 0.00 0.00 3.18
393 397 8.918202 TTAAATGGTTCCTACATGCTATTAGG 57.082 34.615 0.00 0.00 36.88 2.69
462 470 8.978874 TCTTTAATGCATACAGGAATATGTGT 57.021 30.769 0.00 0.00 35.36 3.72
463 471 9.407380 TCTTTAATGCATACAGGAATATGTGTT 57.593 29.630 0.00 0.00 35.36 3.32
466 474 7.886629 AATGCATACAGGAATATGTGTTTCT 57.113 32.000 0.00 0.00 35.36 2.52
520 535 2.922335 GCGTGGGCAAGACAAAAAGATC 60.922 50.000 0.00 0.00 39.62 2.75
820 1011 1.344942 GCGCAACGAGTCCACTAGTG 61.345 60.000 16.34 16.34 32.16 2.74
821 1012 1.344942 CGCAACGAGTCCACTAGTGC 61.345 60.000 17.86 4.85 32.16 4.40
823 1014 0.317160 CAACGAGTCCACTAGTGCCA 59.683 55.000 17.86 2.90 32.16 4.92
824 1015 0.317479 AACGAGTCCACTAGTGCCAC 59.683 55.000 17.86 15.02 32.16 5.01
829 1020 3.305813 CGAGTCCACTAGTGCCACTAAAA 60.306 47.826 17.86 0.00 29.00 1.52
832 1023 4.347000 AGTCCACTAGTGCCACTAAAAGAA 59.653 41.667 17.86 0.00 29.00 2.52
833 1024 5.061179 GTCCACTAGTGCCACTAAAAGAAA 58.939 41.667 17.86 0.00 29.00 2.52
834 1025 5.179555 GTCCACTAGTGCCACTAAAAGAAAG 59.820 44.000 17.86 0.00 29.00 2.62
835 1026 4.455877 CCACTAGTGCCACTAAAAGAAAGG 59.544 45.833 17.86 0.00 29.00 3.11
836 1027 5.305585 CACTAGTGCCACTAAAAGAAAGGA 58.694 41.667 10.54 0.00 29.00 3.36
837 1028 5.940470 CACTAGTGCCACTAAAAGAAAGGAT 59.060 40.000 10.54 0.00 29.00 3.24
838 1029 6.431234 CACTAGTGCCACTAAAAGAAAGGATT 59.569 38.462 10.54 0.00 29.00 3.01
839 1030 5.712152 AGTGCCACTAAAAGAAAGGATTG 57.288 39.130 0.00 0.00 0.00 2.67
840 1031 4.524328 AGTGCCACTAAAAGAAAGGATTGG 59.476 41.667 0.00 0.00 0.00 3.16
841 1032 3.258123 TGCCACTAAAAGAAAGGATTGGC 59.742 43.478 2.26 2.26 46.98 4.52
842 1033 3.368427 GCCACTAAAAGAAAGGATTGGCC 60.368 47.826 0.00 0.00 42.07 5.36
843 1034 3.831911 CCACTAAAAGAAAGGATTGGCCA 59.168 43.478 0.00 0.00 40.02 5.36
844 1035 4.467438 CCACTAAAAGAAAGGATTGGCCAT 59.533 41.667 6.09 0.00 40.02 4.40
845 1036 5.413499 CACTAAAAGAAAGGATTGGCCATG 58.587 41.667 6.09 0.00 40.02 3.66
846 1037 5.047092 CACTAAAAGAAAGGATTGGCCATGT 60.047 40.000 6.09 0.00 40.02 3.21
847 1038 3.967332 AAAGAAAGGATTGGCCATGTG 57.033 42.857 6.09 0.00 40.02 3.21
848 1039 2.905415 AGAAAGGATTGGCCATGTGA 57.095 45.000 6.09 0.00 40.02 3.58
849 1040 3.173953 AGAAAGGATTGGCCATGTGAA 57.826 42.857 6.09 0.00 40.02 3.18
850 1041 3.509442 AGAAAGGATTGGCCATGTGAAA 58.491 40.909 6.09 0.00 40.02 2.69
851 1042 4.098894 AGAAAGGATTGGCCATGTGAAAT 58.901 39.130 6.09 0.00 40.02 2.17
852 1043 3.899052 AAGGATTGGCCATGTGAAATG 57.101 42.857 6.09 0.00 40.02 2.32
853 1044 2.112998 AGGATTGGCCATGTGAAATGG 58.887 47.619 6.09 0.00 41.99 3.16
854 1045 2.109774 GGATTGGCCATGTGAAATGGA 58.890 47.619 6.09 0.00 41.64 3.41
855 1046 2.500910 GGATTGGCCATGTGAAATGGAA 59.499 45.455 6.09 0.00 41.64 3.53
867 1058 2.360191 ATGGAACGGGCCATGCTT 59.640 55.556 4.39 0.00 46.62 3.91
964 1155 2.509336 CCGCCAGCTTACCTCACG 60.509 66.667 0.00 0.00 0.00 4.35
969 1160 2.030185 CGCCAGCTTACCTCACGTATAT 60.030 50.000 0.00 0.00 0.00 0.86
1017 1209 1.647629 CGTACACGGATCGGAGAGG 59.352 63.158 7.35 0.00 36.06 3.69
1038 1230 3.161450 AGACACACCCGCACCAGT 61.161 61.111 0.00 0.00 0.00 4.00
1064 1256 1.662608 CTCATCCGTAGCGAGGCAT 59.337 57.895 0.00 0.00 0.00 4.40
1071 1263 0.039165 CGTAGCGAGGCATATCAGCA 60.039 55.000 0.00 0.00 35.83 4.41
1164 1356 0.606604 TCAGGACCGGCTACTTCAAC 59.393 55.000 0.00 0.00 0.00 3.18
1168 1360 2.047655 CCGGCTACTTCAACGGCA 60.048 61.111 0.00 0.00 39.85 5.69
1296 1500 1.307430 GGAGGAAGGGAGGAAGGCT 60.307 63.158 0.00 0.00 0.00 4.58
1300 1504 1.925972 GAAGGGAGGAAGGCTGGGT 60.926 63.158 0.00 0.00 0.00 4.51
1356 1560 4.681978 GCCGGTGGACGTCAGCTT 62.682 66.667 18.91 0.00 41.41 3.74
1394 1598 0.393537 AGCTAGCCGTAGTACCACGT 60.394 55.000 12.13 0.00 40.31 4.49
1407 1611 0.452184 ACCACGTCGATGTAGAGCTG 59.548 55.000 10.54 0.00 0.00 4.24
1432 1636 0.808755 AAATAAAGTTGCCGAGGCCG 59.191 50.000 12.05 0.00 41.09 6.13
1463 1667 0.928229 GACGGCCGATGTTGTATGTC 59.072 55.000 35.90 11.13 0.00 3.06
1464 1668 0.804544 ACGGCCGATGTTGTATGTCG 60.805 55.000 35.90 0.00 35.29 4.35
1471 1675 4.381863 GCCGATGTTGTATGTCGTATGTAG 59.618 45.833 0.00 0.00 33.77 2.74
1472 1676 5.516996 CCGATGTTGTATGTCGTATGTAGT 58.483 41.667 0.00 0.00 33.77 2.73
1473 1677 5.398416 CCGATGTTGTATGTCGTATGTAGTG 59.602 44.000 0.00 0.00 33.77 2.74
1475 1679 7.127686 CGATGTTGTATGTCGTATGTAGTGTA 58.872 38.462 0.00 0.00 0.00 2.90
1477 1681 9.114965 GATGTTGTATGTCGTATGTAGTGTATC 57.885 37.037 0.00 0.00 0.00 2.24
1478 1682 7.987649 TGTTGTATGTCGTATGTAGTGTATCA 58.012 34.615 0.00 0.00 0.00 2.15
1479 1683 7.911727 TGTTGTATGTCGTATGTAGTGTATCAC 59.088 37.037 0.00 0.00 34.10 3.06
1480 1684 6.962686 TGTATGTCGTATGTAGTGTATCACC 58.037 40.000 0.00 0.00 34.49 4.02
1483 1687 4.271776 TGTCGTATGTAGTGTATCACCGAG 59.728 45.833 0.00 0.00 34.49 4.63
1511 1715 3.145228 GTGAGAAGCACCACCTAGC 57.855 57.895 0.00 0.00 41.78 3.42
1512 1716 0.610687 GTGAGAAGCACCACCTAGCT 59.389 55.000 0.00 0.00 44.31 3.32
1524 1728 2.550855 CCACCTAGCTCTGCTTTTGTCA 60.551 50.000 0.00 0.00 40.44 3.58
1542 1746 3.758023 TGTCATAAGTTTCACCCTGCATG 59.242 43.478 0.00 0.00 0.00 4.06
1543 1747 2.754552 TCATAAGTTTCACCCTGCATGC 59.245 45.455 11.82 11.82 0.00 4.06
1601 1807 5.762218 GTGCATCAATTAGCTGGACTTATCT 59.238 40.000 0.00 0.00 32.71 1.98
1607 1813 8.723942 TCAATTAGCTGGACTTATCTTCTTTC 57.276 34.615 0.00 0.00 0.00 2.62
1611 1817 9.746457 ATTAGCTGGACTTATCTTCTTTCTTTT 57.254 29.630 0.00 0.00 0.00 2.27
1617 1823 9.220767 TGGACTTATCTTCTTTCTTTTCTTAGC 57.779 33.333 0.00 0.00 0.00 3.09
1618 1824 8.384365 GGACTTATCTTCTTTCTTTTCTTAGCG 58.616 37.037 0.00 0.00 0.00 4.26
1619 1825 9.141400 GACTTATCTTCTTTCTTTTCTTAGCGA 57.859 33.333 0.00 0.00 0.00 4.93
1620 1826 9.490379 ACTTATCTTCTTTCTTTTCTTAGCGAA 57.510 29.630 0.00 0.00 0.00 4.70
1638 1844 4.481930 CGAAAAGCAATGTACTGGACAA 57.518 40.909 0.00 0.00 42.78 3.18
1639 1845 5.046910 CGAAAAGCAATGTACTGGACAAT 57.953 39.130 0.00 0.00 42.78 2.71
1640 1846 5.088739 CGAAAAGCAATGTACTGGACAATC 58.911 41.667 0.00 0.00 42.78 2.67
1641 1847 4.685169 AAAGCAATGTACTGGACAATCG 57.315 40.909 0.00 0.00 42.78 3.34
1642 1848 2.009774 AGCAATGTACTGGACAATCGC 58.990 47.619 0.00 0.00 42.78 4.58
1643 1849 1.064060 GCAATGTACTGGACAATCGCC 59.936 52.381 0.00 0.00 42.78 5.54
1644 1850 1.670811 CAATGTACTGGACAATCGCCC 59.329 52.381 0.00 0.00 42.78 6.13
1645 1851 1.204146 ATGTACTGGACAATCGCCCT 58.796 50.000 0.00 0.00 42.78 5.19
1646 1852 0.249120 TGTACTGGACAATCGCCCTG 59.751 55.000 0.00 0.00 34.15 4.45
1647 1853 0.535335 GTACTGGACAATCGCCCTGA 59.465 55.000 0.00 0.00 0.00 3.86
1648 1854 1.139058 GTACTGGACAATCGCCCTGAT 59.861 52.381 0.00 0.00 39.67 2.90
1649 1855 0.107508 ACTGGACAATCGCCCTGATG 60.108 55.000 0.00 0.00 37.39 3.07
1650 1856 0.816825 CTGGACAATCGCCCTGATGG 60.817 60.000 0.00 0.00 37.39 3.51
1661 1867 1.747709 CCCTGATGGCTATAGCATGC 58.252 55.000 25.53 10.51 44.36 4.06
1662 1868 1.281287 CCCTGATGGCTATAGCATGCT 59.719 52.381 25.99 25.99 44.36 3.79
1663 1869 2.290768 CCCTGATGGCTATAGCATGCTT 60.291 50.000 28.02 15.84 44.36 3.91
1664 1870 3.054875 CCCTGATGGCTATAGCATGCTTA 60.055 47.826 28.02 16.12 44.36 3.09
1665 1871 3.937706 CCTGATGGCTATAGCATGCTTAC 59.062 47.826 28.02 12.62 44.36 2.34
1666 1872 4.564199 CCTGATGGCTATAGCATGCTTACA 60.564 45.833 28.02 17.26 44.36 2.41
1667 1873 4.971939 TGATGGCTATAGCATGCTTACAA 58.028 39.130 28.02 8.15 44.36 2.41
1668 1874 4.999311 TGATGGCTATAGCATGCTTACAAG 59.001 41.667 28.02 17.93 44.36 3.16
1669 1875 4.687901 TGGCTATAGCATGCTTACAAGA 57.312 40.909 28.02 6.82 44.36 3.02
1670 1876 4.380531 TGGCTATAGCATGCTTACAAGAC 58.619 43.478 28.02 19.42 44.36 3.01
1671 1877 4.141733 TGGCTATAGCATGCTTACAAGACA 60.142 41.667 28.02 21.68 44.36 3.41
1672 1878 4.212214 GGCTATAGCATGCTTACAAGACAC 59.788 45.833 28.02 6.05 44.36 3.67
1673 1879 5.053145 GCTATAGCATGCTTACAAGACACT 58.947 41.667 28.02 0.00 41.59 3.55
1674 1880 5.525378 GCTATAGCATGCTTACAAGACACTT 59.475 40.000 28.02 0.00 41.59 3.16
1675 1881 6.292596 GCTATAGCATGCTTACAAGACACTTC 60.293 42.308 28.02 1.34 41.59 3.01
1676 1882 3.077359 AGCATGCTTACAAGACACTTCC 58.923 45.455 16.30 0.00 0.00 3.46
1677 1883 2.159653 GCATGCTTACAAGACACTTCCG 60.160 50.000 11.37 0.00 0.00 4.30
1678 1884 2.902705 TGCTTACAAGACACTTCCGT 57.097 45.000 0.00 0.00 0.00 4.69
1679 1885 2.750948 TGCTTACAAGACACTTCCGTC 58.249 47.619 0.00 0.00 36.08 4.79
1688 1894 4.769859 AGACACTTCCGTCTAAGTTCTC 57.230 45.455 0.00 0.00 44.46 2.87
1692 1898 3.438087 CACTTCCGTCTAAGTTCTCCGTA 59.562 47.826 0.00 0.00 37.61 4.02
1796 2003 1.518133 CTTCCTCGCTGAGCTTCGG 60.518 63.158 1.78 0.00 0.00 4.30
1914 2121 2.487086 CCCCGGATGCAGATGTTCAATA 60.487 50.000 0.73 0.00 0.00 1.90
1998 2206 2.752358 CCAAGCTGAGCTGACCCA 59.248 61.111 8.16 0.00 39.62 4.51
2027 2235 0.108615 CGACAGGGTCTTCGCATCTT 60.109 55.000 0.00 0.00 0.00 2.40
2062 2270 0.036294 GTTGTCCCCTAGCTTCGCTT 60.036 55.000 0.00 0.00 40.44 4.68
2109 2317 2.364961 CGTCCCCCTCCTCCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
2114 2322 1.236708 CCCCCTCCTCCTCTTCTCTA 58.763 60.000 0.00 0.00 0.00 2.43
2131 2340 2.486982 CTCTAAGAACGAACGTCCTCCA 59.513 50.000 0.00 0.00 0.00 3.86
2174 2383 3.432252 CGAAACCTTCTAGTTGCGTCAAT 59.568 43.478 0.00 0.00 42.68 2.57
2188 2397 2.179018 CAATCTGGGTTTGCCGCG 59.821 61.111 0.00 0.00 34.97 6.46
2242 2451 1.689233 CCCCCATCGTTCCCTCTCA 60.689 63.158 0.00 0.00 0.00 3.27
2280 2489 1.065401 CTTTTGTGCAAAGCGGTCTCA 59.935 47.619 0.00 0.00 35.66 3.27
2303 2513 4.016666 ACCAATTCATGAAAGGATGGGGTA 60.017 41.667 27.60 0.00 0.00 3.69
2461 2671 4.338682 ACGGTCATCTACACTAATGAGGAC 59.661 45.833 0.00 0.00 39.74 3.85
2481 2691 2.822255 GTATTGGCGCTTGCGGGA 60.822 61.111 16.79 0.00 40.46 5.14
2527 2737 4.884164 GGAGATGCCAATACAGCTTACTTT 59.116 41.667 0.00 0.00 36.18 2.66
2532 2742 4.010349 GCCAATACAGCTTACTTTCAGGT 58.990 43.478 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.155393 ACTTGGGAGTATTTCAAACCAAAACA 59.845 34.615 0.00 0.00 37.51 2.83
1 2 6.578944 ACTTGGGAGTATTTCAAACCAAAAC 58.421 36.000 0.00 0.00 37.51 2.43
2 3 6.800072 ACTTGGGAGTATTTCAAACCAAAA 57.200 33.333 0.00 0.00 37.51 2.44
3 4 6.183360 GGAACTTGGGAGTATTTCAAACCAAA 60.183 38.462 0.00 0.00 37.51 3.28
4 5 5.303333 GGAACTTGGGAGTATTTCAAACCAA 59.697 40.000 0.00 0.00 34.21 3.67
5 6 4.830600 GGAACTTGGGAGTATTTCAAACCA 59.169 41.667 0.00 0.00 34.21 3.67
6 7 5.077564 AGGAACTTGGGAGTATTTCAAACC 58.922 41.667 0.00 0.00 34.21 3.27
7 8 5.183331 GGAGGAACTTGGGAGTATTTCAAAC 59.817 44.000 0.00 0.00 41.55 2.93
8 9 5.074515 AGGAGGAACTTGGGAGTATTTCAAA 59.925 40.000 0.00 0.00 41.55 2.69
9 10 4.601857 AGGAGGAACTTGGGAGTATTTCAA 59.398 41.667 0.00 0.00 41.55 2.69
10 11 4.175962 AGGAGGAACTTGGGAGTATTTCA 58.824 43.478 0.00 0.00 41.55 2.69
11 12 4.846168 AGGAGGAACTTGGGAGTATTTC 57.154 45.455 0.00 0.00 41.55 2.17
12 13 6.910259 AATAGGAGGAACTTGGGAGTATTT 57.090 37.500 0.00 0.00 41.55 1.40
13 14 6.447084 TCAAATAGGAGGAACTTGGGAGTATT 59.553 38.462 0.00 0.00 41.55 1.89
14 15 5.970640 TCAAATAGGAGGAACTTGGGAGTAT 59.029 40.000 0.00 0.00 41.55 2.12
15 16 5.347124 TCAAATAGGAGGAACTTGGGAGTA 58.653 41.667 0.00 0.00 41.55 2.59
16 17 4.175962 TCAAATAGGAGGAACTTGGGAGT 58.824 43.478 0.00 0.00 41.55 3.85
17 18 4.844349 TCAAATAGGAGGAACTTGGGAG 57.156 45.455 0.00 0.00 41.55 4.30
18 19 5.252863 TCAATCAAATAGGAGGAACTTGGGA 59.747 40.000 0.00 0.00 41.55 4.37
19 20 5.509498 TCAATCAAATAGGAGGAACTTGGG 58.491 41.667 0.00 0.00 41.55 4.12
20 21 7.340232 TGAATCAATCAAATAGGAGGAACTTGG 59.660 37.037 0.00 0.00 34.25 3.61
21 22 8.284945 TGAATCAATCAAATAGGAGGAACTTG 57.715 34.615 0.00 0.00 34.25 3.16
22 23 9.129532 GATGAATCAATCAAATAGGAGGAACTT 57.870 33.333 0.00 0.00 40.01 2.66
23 24 8.501070 AGATGAATCAATCAAATAGGAGGAACT 58.499 33.333 0.00 0.00 42.24 3.01
24 25 8.566260 CAGATGAATCAATCAAATAGGAGGAAC 58.434 37.037 0.00 0.00 42.54 3.62
25 26 8.496916 TCAGATGAATCAATCAAATAGGAGGAA 58.503 33.333 0.00 0.00 42.54 3.36
26 27 8.037723 TCAGATGAATCAATCAAATAGGAGGA 57.962 34.615 0.00 0.00 42.54 3.71
27 28 8.731605 CATCAGATGAATCAATCAAATAGGAGG 58.268 37.037 4.11 0.00 42.54 4.30
28 29 8.731605 CCATCAGATGAATCAATCAAATAGGAG 58.268 37.037 12.41 0.00 42.54 3.69
29 30 8.442374 TCCATCAGATGAATCAATCAAATAGGA 58.558 33.333 12.41 0.00 42.54 2.94
30 31 8.512956 GTCCATCAGATGAATCAATCAAATAGG 58.487 37.037 12.41 0.00 42.54 2.57
31 32 9.063615 TGTCCATCAGATGAATCAATCAAATAG 57.936 33.333 12.41 0.00 42.54 1.73
32 33 8.983702 TGTCCATCAGATGAATCAATCAAATA 57.016 30.769 12.41 0.00 42.54 1.40
33 34 7.891498 TGTCCATCAGATGAATCAATCAAAT 57.109 32.000 12.41 0.00 42.54 2.32
34 35 7.891498 ATGTCCATCAGATGAATCAATCAAA 57.109 32.000 12.41 0.00 42.54 2.69
35 36 7.891498 AATGTCCATCAGATGAATCAATCAA 57.109 32.000 12.41 0.00 42.54 2.57
36 37 9.010029 CATAATGTCCATCAGATGAATCAATCA 57.990 33.333 12.41 1.30 43.67 2.57
37 38 9.011095 ACATAATGTCCATCAGATGAATCAATC 57.989 33.333 12.41 0.00 31.66 2.67
38 39 8.935614 ACATAATGTCCATCAGATGAATCAAT 57.064 30.769 12.41 4.13 31.66 2.57
39 40 7.994334 TGACATAATGTCCATCAGATGAATCAA 59.006 33.333 12.41 0.00 46.40 2.57
40 41 7.511268 TGACATAATGTCCATCAGATGAATCA 58.489 34.615 12.41 8.04 46.40 2.57
41 42 7.119407 CCTGACATAATGTCCATCAGATGAATC 59.881 40.741 12.41 2.72 46.40 2.52
42 43 6.940867 CCTGACATAATGTCCATCAGATGAAT 59.059 38.462 12.41 0.06 46.40 2.57
43 44 6.293698 CCTGACATAATGTCCATCAGATGAA 58.706 40.000 12.41 0.00 46.40 2.57
44 45 5.744007 GCCTGACATAATGTCCATCAGATGA 60.744 44.000 12.41 0.00 46.40 2.92
45 46 4.454847 GCCTGACATAATGTCCATCAGATG 59.545 45.833 3.04 3.04 46.40 2.90
46 47 4.103627 TGCCTGACATAATGTCCATCAGAT 59.896 41.667 0.00 0.00 46.40 2.90
47 48 3.455543 TGCCTGACATAATGTCCATCAGA 59.544 43.478 0.00 0.00 46.40 3.27
48 49 3.812262 TGCCTGACATAATGTCCATCAG 58.188 45.455 0.00 1.24 46.40 2.90
49 50 3.929955 TGCCTGACATAATGTCCATCA 57.070 42.857 0.00 0.00 46.40 3.07
50 51 5.779529 ATTTGCCTGACATAATGTCCATC 57.220 39.130 0.00 0.00 46.40 3.51
51 52 6.435277 GGATATTTGCCTGACATAATGTCCAT 59.565 38.462 5.52 0.00 46.40 3.41
52 53 5.769662 GGATATTTGCCTGACATAATGTCCA 59.230 40.000 5.52 0.00 46.40 4.02
53 54 5.769662 TGGATATTTGCCTGACATAATGTCC 59.230 40.000 4.59 4.59 46.40 4.02
55 56 7.944000 TGTATGGATATTTGCCTGACATAATGT 59.056 33.333 0.00 0.00 0.00 2.71
56 57 8.339344 TGTATGGATATTTGCCTGACATAATG 57.661 34.615 0.00 0.00 0.00 1.90
57 58 8.938801 TTGTATGGATATTTGCCTGACATAAT 57.061 30.769 0.00 0.00 0.00 1.28
58 59 7.998383 ACTTGTATGGATATTTGCCTGACATAA 59.002 33.333 0.00 0.00 0.00 1.90
59 60 7.517320 ACTTGTATGGATATTTGCCTGACATA 58.483 34.615 0.00 0.00 0.00 2.29
60 61 6.367983 ACTTGTATGGATATTTGCCTGACAT 58.632 36.000 0.00 0.00 0.00 3.06
61 62 5.754782 ACTTGTATGGATATTTGCCTGACA 58.245 37.500 0.00 0.00 0.00 3.58
62 63 5.050091 CGACTTGTATGGATATTTGCCTGAC 60.050 44.000 0.00 0.00 0.00 3.51
63 64 5.056480 CGACTTGTATGGATATTTGCCTGA 58.944 41.667 0.00 0.00 0.00 3.86
64 65 5.056480 TCGACTTGTATGGATATTTGCCTG 58.944 41.667 0.00 0.00 0.00 4.85
65 66 5.070446 TCTCGACTTGTATGGATATTTGCCT 59.930 40.000 0.00 0.00 0.00 4.75
66 67 5.297547 TCTCGACTTGTATGGATATTTGCC 58.702 41.667 0.00 0.00 0.00 4.52
67 68 8.709386 ATATCTCGACTTGTATGGATATTTGC 57.291 34.615 0.00 0.00 0.00 3.68
131 132 8.624776 GCAACCAATTAGCAGAAGAATAATAGT 58.375 33.333 0.00 0.00 0.00 2.12
132 133 8.844244 AGCAACCAATTAGCAGAAGAATAATAG 58.156 33.333 0.00 0.00 0.00 1.73
133 134 8.752005 AGCAACCAATTAGCAGAAGAATAATA 57.248 30.769 0.00 0.00 0.00 0.98
134 135 7.651027 AGCAACCAATTAGCAGAAGAATAAT 57.349 32.000 0.00 0.00 0.00 1.28
135 136 7.176515 TCAAGCAACCAATTAGCAGAAGAATAA 59.823 33.333 0.00 0.00 0.00 1.40
136 137 6.658816 TCAAGCAACCAATTAGCAGAAGAATA 59.341 34.615 0.00 0.00 0.00 1.75
137 138 5.477984 TCAAGCAACCAATTAGCAGAAGAAT 59.522 36.000 0.00 0.00 0.00 2.40
138 139 4.826733 TCAAGCAACCAATTAGCAGAAGAA 59.173 37.500 0.00 0.00 0.00 2.52
139 140 4.216257 GTCAAGCAACCAATTAGCAGAAGA 59.784 41.667 0.00 0.00 0.00 2.87
140 141 4.479619 GTCAAGCAACCAATTAGCAGAAG 58.520 43.478 0.00 0.00 0.00 2.85
141 142 3.255642 GGTCAAGCAACCAATTAGCAGAA 59.744 43.478 0.00 0.00 39.27 3.02
142 143 2.819608 GGTCAAGCAACCAATTAGCAGA 59.180 45.455 0.00 0.00 39.27 4.26
143 144 2.557924 TGGTCAAGCAACCAATTAGCAG 59.442 45.455 3.40 0.00 46.26 4.24
144 145 2.591923 TGGTCAAGCAACCAATTAGCA 58.408 42.857 3.40 0.00 46.26 3.49
152 153 3.317993 ACAGTACATTTGGTCAAGCAACC 59.682 43.478 0.00 0.00 39.94 3.77
153 154 4.568152 ACAGTACATTTGGTCAAGCAAC 57.432 40.909 0.00 0.00 0.00 4.17
154 155 5.616270 TCTACAGTACATTTGGTCAAGCAA 58.384 37.500 0.00 0.00 0.00 3.91
155 156 5.222079 TCTACAGTACATTTGGTCAAGCA 57.778 39.130 0.00 0.00 0.00 3.91
156 157 5.874810 TCATCTACAGTACATTTGGTCAAGC 59.125 40.000 0.00 0.00 0.00 4.01
157 158 7.984050 AGATCATCTACAGTACATTTGGTCAAG 59.016 37.037 0.00 0.00 0.00 3.02
158 159 7.851228 AGATCATCTACAGTACATTTGGTCAA 58.149 34.615 0.00 0.00 0.00 3.18
159 160 7.423844 AGATCATCTACAGTACATTTGGTCA 57.576 36.000 0.00 0.00 0.00 4.02
160 161 9.988815 ATAAGATCATCTACAGTACATTTGGTC 57.011 33.333 0.00 0.00 0.00 4.02
201 202 9.308000 ACAATGAAGAACAATAACATTTCCCTA 57.692 29.630 0.00 0.00 0.00 3.53
202 203 8.193953 ACAATGAAGAACAATAACATTTCCCT 57.806 30.769 0.00 0.00 0.00 4.20
203 204 9.573133 CTACAATGAAGAACAATAACATTTCCC 57.427 33.333 0.00 0.00 0.00 3.97
206 207 9.912634 CCACTACAATGAAGAACAATAACATTT 57.087 29.630 0.00 0.00 0.00 2.32
207 208 9.295825 TCCACTACAATGAAGAACAATAACATT 57.704 29.630 0.00 0.00 0.00 2.71
208 209 8.862325 TCCACTACAATGAAGAACAATAACAT 57.138 30.769 0.00 0.00 0.00 2.71
209 210 8.729756 CATCCACTACAATGAAGAACAATAACA 58.270 33.333 0.00 0.00 0.00 2.41
210 211 8.946085 TCATCCACTACAATGAAGAACAATAAC 58.054 33.333 0.00 0.00 0.00 1.89
211 212 9.685276 ATCATCCACTACAATGAAGAACAATAA 57.315 29.630 0.00 0.00 35.64 1.40
213 214 9.857656 ATATCATCCACTACAATGAAGAACAAT 57.142 29.630 0.00 0.00 35.64 2.71
214 215 9.330063 GATATCATCCACTACAATGAAGAACAA 57.670 33.333 0.00 0.00 35.64 2.83
215 216 8.893219 GATATCATCCACTACAATGAAGAACA 57.107 34.615 0.00 0.00 35.64 3.18
232 233 8.492782 ATCTCAATAACTGGGATGGATATCATC 58.507 37.037 4.83 5.93 44.13 2.92
233 234 7.819521 TCTCAATAACTGGGATGGATATCAT 57.180 36.000 4.83 0.00 39.13 2.45
234 235 7.819521 ATCTCAATAACTGGGATGGATATCA 57.180 36.000 4.83 0.00 44.13 2.15
243 244 4.776435 TGCATCATCTCAATAACTGGGA 57.224 40.909 0.00 0.00 39.50 4.37
244 245 4.885907 ACTTGCATCATCTCAATAACTGGG 59.114 41.667 0.00 0.00 0.00 4.45
245 246 6.765036 AGTACTTGCATCATCTCAATAACTGG 59.235 38.462 0.00 0.00 0.00 4.00
246 247 7.783090 AGTACTTGCATCATCTCAATAACTG 57.217 36.000 0.00 0.00 0.00 3.16
247 248 7.928706 GGTAGTACTTGCATCATCTCAATAACT 59.071 37.037 0.00 0.00 0.00 2.24
248 249 7.096023 CGGTAGTACTTGCATCATCTCAATAAC 60.096 40.741 0.00 0.00 0.00 1.89
249 250 6.923508 CGGTAGTACTTGCATCATCTCAATAA 59.076 38.462 0.00 0.00 0.00 1.40
250 251 6.264518 TCGGTAGTACTTGCATCATCTCAATA 59.735 38.462 0.00 0.00 0.00 1.90
251 252 5.069119 TCGGTAGTACTTGCATCATCTCAAT 59.931 40.000 0.00 0.00 0.00 2.57
252 253 4.401202 TCGGTAGTACTTGCATCATCTCAA 59.599 41.667 0.00 0.00 0.00 3.02
253 254 3.951680 TCGGTAGTACTTGCATCATCTCA 59.048 43.478 0.00 0.00 0.00 3.27
254 255 4.569761 TCGGTAGTACTTGCATCATCTC 57.430 45.455 0.00 0.00 0.00 2.75
255 256 4.584743 TCATCGGTAGTACTTGCATCATCT 59.415 41.667 0.00 0.00 0.00 2.90
256 257 4.871513 TCATCGGTAGTACTTGCATCATC 58.128 43.478 0.00 0.00 0.00 2.92
257 258 4.937201 TCATCGGTAGTACTTGCATCAT 57.063 40.909 0.00 0.00 0.00 2.45
258 259 4.937201 ATCATCGGTAGTACTTGCATCA 57.063 40.909 0.00 0.00 0.00 3.07
259 260 6.604735 AAAATCATCGGTAGTACTTGCATC 57.395 37.500 0.00 0.00 0.00 3.91
260 261 6.374333 ACAAAAATCATCGGTAGTACTTGCAT 59.626 34.615 0.00 0.00 0.00 3.96
261 262 5.703592 ACAAAAATCATCGGTAGTACTTGCA 59.296 36.000 0.00 0.00 0.00 4.08
262 263 6.092259 AGACAAAAATCATCGGTAGTACTTGC 59.908 38.462 0.00 0.00 0.00 4.01
263 264 7.545965 AGAGACAAAAATCATCGGTAGTACTTG 59.454 37.037 0.00 0.00 0.00 3.16
264 265 7.545965 CAGAGACAAAAATCATCGGTAGTACTT 59.454 37.037 0.00 0.00 0.00 2.24
265 266 7.036220 CAGAGACAAAAATCATCGGTAGTACT 58.964 38.462 0.00 0.00 0.00 2.73
266 267 7.033791 TCAGAGACAAAAATCATCGGTAGTAC 58.966 38.462 0.00 0.00 0.00 2.73
267 268 7.165460 TCAGAGACAAAAATCATCGGTAGTA 57.835 36.000 0.00 0.00 0.00 1.82
268 269 6.037786 TCAGAGACAAAAATCATCGGTAGT 57.962 37.500 0.00 0.00 0.00 2.73
269 270 5.006165 GCTCAGAGACAAAAATCATCGGTAG 59.994 44.000 0.00 0.00 0.00 3.18
270 271 4.870426 GCTCAGAGACAAAAATCATCGGTA 59.130 41.667 0.00 0.00 0.00 4.02
271 272 3.686726 GCTCAGAGACAAAAATCATCGGT 59.313 43.478 0.00 0.00 0.00 4.69
272 273 3.686241 TGCTCAGAGACAAAAATCATCGG 59.314 43.478 0.00 0.00 0.00 4.18
273 274 4.934075 TGCTCAGAGACAAAAATCATCG 57.066 40.909 0.00 0.00 0.00 3.84
274 275 6.441274 TGTTTGCTCAGAGACAAAAATCATC 58.559 36.000 16.74 8.14 37.50 2.92
275 276 6.263842 TCTGTTTGCTCAGAGACAAAAATCAT 59.736 34.615 16.74 0.00 39.20 2.45
276 277 5.589855 TCTGTTTGCTCAGAGACAAAAATCA 59.410 36.000 16.74 11.92 39.20 2.57
277 278 6.064846 TCTGTTTGCTCAGAGACAAAAATC 57.935 37.500 16.74 9.12 39.20 2.17
278 279 6.455360 TTCTGTTTGCTCAGAGACAAAAAT 57.545 33.333 16.74 0.00 43.85 1.82
279 280 5.895636 TTCTGTTTGCTCAGAGACAAAAA 57.104 34.783 16.74 12.76 43.85 1.94
280 281 5.895636 TTTCTGTTTGCTCAGAGACAAAA 57.104 34.783 16.74 5.73 43.85 2.44
281 282 5.357878 ACATTTCTGTTTGCTCAGAGACAAA 59.642 36.000 13.07 13.07 43.85 2.83
282 283 4.883585 ACATTTCTGTTTGCTCAGAGACAA 59.116 37.500 0.00 2.39 43.85 3.18
283 284 4.454678 ACATTTCTGTTTGCTCAGAGACA 58.545 39.130 0.00 0.00 43.85 3.41
284 285 5.429957 AACATTTCTGTTTGCTCAGAGAC 57.570 39.130 0.00 0.00 43.05 3.36
604 619 3.282885 TGGTGTCTTGTTGTGCACAATA 58.717 40.909 33.16 28.18 44.72 1.90
809 1000 3.901844 TCTTTTAGTGGCACTAGTGGACT 59.098 43.478 25.00 2.24 31.47 3.85
820 1011 3.849911 GCCAATCCTTTCTTTTAGTGGC 58.150 45.455 0.00 0.00 43.10 5.01
821 1012 3.831911 TGGCCAATCCTTTCTTTTAGTGG 59.168 43.478 0.61 0.00 35.26 4.00
823 1014 5.047092 CACATGGCCAATCCTTTCTTTTAGT 60.047 40.000 10.96 0.00 35.26 2.24
824 1015 5.185635 TCACATGGCCAATCCTTTCTTTTAG 59.814 40.000 10.96 0.00 35.26 1.85
829 1020 2.905415 TCACATGGCCAATCCTTTCT 57.095 45.000 10.96 0.00 35.26 2.52
832 1023 2.502538 CCATTTCACATGGCCAATCCTT 59.497 45.455 10.96 0.00 35.26 3.36
833 1024 2.112998 CCATTTCACATGGCCAATCCT 58.887 47.619 10.96 0.00 35.26 3.24
834 1025 2.109774 TCCATTTCACATGGCCAATCC 58.890 47.619 10.96 0.00 39.01 3.01
835 1026 3.524541 GTTCCATTTCACATGGCCAATC 58.475 45.455 10.96 0.00 39.01 2.67
836 1027 2.094078 CGTTCCATTTCACATGGCCAAT 60.094 45.455 10.96 0.00 39.01 3.16
837 1028 1.271934 CGTTCCATTTCACATGGCCAA 59.728 47.619 10.96 0.00 39.01 4.52
838 1029 0.887247 CGTTCCATTTCACATGGCCA 59.113 50.000 8.56 8.56 39.01 5.36
839 1030 0.173255 CCGTTCCATTTCACATGGCC 59.827 55.000 0.00 0.00 39.01 5.36
840 1031 0.173255 CCCGTTCCATTTCACATGGC 59.827 55.000 0.00 0.00 39.01 4.40
841 1032 0.173255 GCCCGTTCCATTTCACATGG 59.827 55.000 0.00 0.00 40.48 3.66
842 1033 0.173255 GGCCCGTTCCATTTCACATG 59.827 55.000 0.00 0.00 0.00 3.21
843 1034 0.251564 TGGCCCGTTCCATTTCACAT 60.252 50.000 0.00 0.00 0.00 3.21
844 1035 0.251564 ATGGCCCGTTCCATTTCACA 60.252 50.000 0.00 0.00 44.04 3.58
845 1036 0.173255 CATGGCCCGTTCCATTTCAC 59.827 55.000 0.00 0.00 44.04 3.18
846 1037 1.603236 GCATGGCCCGTTCCATTTCA 61.603 55.000 0.00 0.00 44.04 2.69
847 1038 1.141665 GCATGGCCCGTTCCATTTC 59.858 57.895 0.00 0.00 44.04 2.17
848 1039 0.904394 AAGCATGGCCCGTTCCATTT 60.904 50.000 0.00 0.00 44.04 2.32
849 1040 0.904394 AAAGCATGGCCCGTTCCATT 60.904 50.000 0.00 0.00 44.04 3.16
851 1042 0.679640 CTAAAGCATGGCCCGTTCCA 60.680 55.000 0.00 0.00 40.97 3.53
852 1043 0.393808 TCTAAAGCATGGCCCGTTCC 60.394 55.000 0.00 0.00 0.00 3.62
853 1044 1.017387 CTCTAAAGCATGGCCCGTTC 58.983 55.000 0.00 0.00 0.00 3.95
854 1045 0.394352 CCTCTAAAGCATGGCCCGTT 60.394 55.000 0.00 0.00 0.00 4.44
855 1046 1.224592 CCTCTAAAGCATGGCCCGT 59.775 57.895 0.00 0.00 0.00 5.28
867 1058 1.380524 CTCGCTCTCGAACCCTCTAA 58.619 55.000 0.00 0.00 44.98 2.10
918 1109 4.717629 TGAAGAGGACACGCCGCG 62.718 66.667 12.14 12.14 41.97 6.46
964 1155 2.852413 CGGTGCACTGCGCTATATATAC 59.148 50.000 17.98 0.00 43.06 1.47
969 1160 2.584970 GCGGTGCACTGCGCTATA 60.585 61.111 33.25 0.00 43.06 1.31
1017 1209 3.044305 GTGCGGGTGTGTCTCTGC 61.044 66.667 0.00 0.00 35.93 4.26
1038 1230 0.741326 GCTACGGATGAGCTGAGTGA 59.259 55.000 0.00 0.00 36.96 3.41
1064 1256 0.533531 CGCCATGGCTCTTGCTGATA 60.534 55.000 33.07 0.00 39.59 2.15
1071 1263 2.185350 CTCGTCGCCATGGCTCTT 59.815 61.111 33.07 0.00 39.32 2.85
1095 1287 2.029288 CGTGCCGTGCTTGATGTCT 61.029 57.895 0.00 0.00 0.00 3.41
1272 1476 2.652113 CCTCCCTTCCTCCTCCCCT 61.652 68.421 0.00 0.00 0.00 4.79
1394 1598 2.640316 TCTAGGCAGCTCTACATCGA 57.360 50.000 0.00 0.00 0.00 3.59
1407 1611 3.312697 CCTCGGCAACTTTATTTCTAGGC 59.687 47.826 0.00 0.00 0.00 3.93
1452 1656 8.626526 TGATACACTACATACGACATACAACAT 58.373 33.333 0.00 0.00 0.00 2.71
1463 1667 3.562973 ACCTCGGTGATACACTACATACG 59.437 47.826 0.00 0.00 34.40 3.06
1464 1668 4.577693 TGACCTCGGTGATACACTACATAC 59.422 45.833 0.00 0.00 34.40 2.39
1471 1675 1.734707 CGGTTGACCTCGGTGATACAC 60.735 57.143 0.00 0.00 0.00 2.90
1472 1676 0.528924 CGGTTGACCTCGGTGATACA 59.471 55.000 0.00 0.00 0.00 2.29
1473 1677 0.529378 ACGGTTGACCTCGGTGATAC 59.471 55.000 0.00 0.00 0.00 2.24
1475 1679 1.292223 CACGGTTGACCTCGGTGAT 59.708 57.895 0.00 0.00 38.02 3.06
1477 1681 1.954146 CACACGGTTGACCTCGGTG 60.954 63.158 0.00 2.34 40.34 4.94
1478 1682 2.083835 CTCACACGGTTGACCTCGGT 62.084 60.000 0.00 0.00 0.00 4.69
1479 1683 1.372997 CTCACACGGTTGACCTCGG 60.373 63.158 0.00 0.00 0.00 4.63
1480 1684 0.031585 TTCTCACACGGTTGACCTCG 59.968 55.000 0.00 0.00 0.00 4.63
1483 1687 0.531974 TGCTTCTCACACGGTTGACC 60.532 55.000 0.00 0.00 0.00 4.02
1506 1710 5.181748 ACTTATGACAAAAGCAGAGCTAGG 58.818 41.667 0.00 0.00 38.25 3.02
1511 1715 6.145535 GGTGAAACTTATGACAAAAGCAGAG 58.854 40.000 0.00 0.00 36.74 3.35
1512 1716 5.009610 GGGTGAAACTTATGACAAAAGCAGA 59.990 40.000 0.00 0.00 36.74 4.26
1524 1728 1.745087 CGCATGCAGGGTGAAACTTAT 59.255 47.619 19.57 0.00 36.74 1.73
1542 1746 2.817538 TATTTTCTAAAGCACCGCGC 57.182 45.000 0.00 0.00 42.91 6.86
1543 1747 5.328691 TCATTTATTTTCTAAAGCACCGCG 58.671 37.500 0.00 0.00 0.00 6.46
1548 1752 8.637986 ACACTGGTTCATTTATTTTCTAAAGCA 58.362 29.630 0.00 0.00 0.00 3.91
1611 1817 4.391830 CCAGTACATTGCTTTTCGCTAAGA 59.608 41.667 0.00 0.00 40.11 2.10
1616 1822 2.225491 TGTCCAGTACATTGCTTTTCGC 59.775 45.455 0.00 0.00 33.94 4.70
1617 1823 4.481930 TTGTCCAGTACATTGCTTTTCG 57.518 40.909 0.00 0.00 38.10 3.46
1618 1824 5.088739 CGATTGTCCAGTACATTGCTTTTC 58.911 41.667 0.00 0.00 38.10 2.29
1619 1825 4.615912 GCGATTGTCCAGTACATTGCTTTT 60.616 41.667 0.00 0.00 38.10 2.27
1620 1826 3.119849 GCGATTGTCCAGTACATTGCTTT 60.120 43.478 0.00 0.00 38.10 3.51
1621 1827 2.420022 GCGATTGTCCAGTACATTGCTT 59.580 45.455 0.00 0.00 38.10 3.91
1622 1828 2.009774 GCGATTGTCCAGTACATTGCT 58.990 47.619 0.00 0.00 38.10 3.91
1623 1829 1.064060 GGCGATTGTCCAGTACATTGC 59.936 52.381 0.00 0.00 38.10 3.56
1624 1830 1.670811 GGGCGATTGTCCAGTACATTG 59.329 52.381 0.00 0.00 40.65 2.82
1625 1831 1.559682 AGGGCGATTGTCCAGTACATT 59.440 47.619 6.31 0.00 44.71 2.71
1626 1832 1.134401 CAGGGCGATTGTCCAGTACAT 60.134 52.381 6.31 0.00 44.71 2.29
1627 1833 0.249120 CAGGGCGATTGTCCAGTACA 59.751 55.000 6.31 0.00 44.71 2.90
1628 1834 0.535335 TCAGGGCGATTGTCCAGTAC 59.465 55.000 6.31 0.00 44.71 2.73
1629 1835 1.138859 CATCAGGGCGATTGTCCAGTA 59.861 52.381 6.31 0.00 44.71 2.74
1630 1836 0.107508 CATCAGGGCGATTGTCCAGT 60.108 55.000 6.31 0.00 44.71 4.00
1631 1837 0.816825 CCATCAGGGCGATTGTCCAG 60.817 60.000 6.31 0.00 44.71 3.86
1632 1838 1.224315 CCATCAGGGCGATTGTCCA 59.776 57.895 6.31 0.00 44.71 4.02
1633 1839 4.147701 CCATCAGGGCGATTGTCC 57.852 61.111 0.00 0.00 41.57 4.02
1642 1848 1.281287 AGCATGCTATAGCCATCAGGG 59.719 52.381 21.21 4.90 41.18 4.45
1643 1849 2.783609 AGCATGCTATAGCCATCAGG 57.216 50.000 21.21 6.19 41.18 3.86
1644 1850 4.572909 TGTAAGCATGCTATAGCCATCAG 58.427 43.478 23.00 8.19 41.18 2.90
1645 1851 4.622260 TGTAAGCATGCTATAGCCATCA 57.378 40.909 23.00 8.53 41.18 3.07
1646 1852 5.121454 GTCTTGTAAGCATGCTATAGCCATC 59.879 44.000 23.00 10.20 41.18 3.51
1647 1853 4.999950 GTCTTGTAAGCATGCTATAGCCAT 59.000 41.667 23.00 12.20 41.18 4.40
1648 1854 4.141733 TGTCTTGTAAGCATGCTATAGCCA 60.142 41.667 23.00 9.08 41.18 4.75
1649 1855 4.212214 GTGTCTTGTAAGCATGCTATAGCC 59.788 45.833 23.00 6.51 41.18 3.93
1650 1856 5.053145 AGTGTCTTGTAAGCATGCTATAGC 58.947 41.667 23.00 18.18 42.50 2.97
1651 1857 6.201806 GGAAGTGTCTTGTAAGCATGCTATAG 59.798 42.308 23.00 15.17 0.00 1.31
1652 1858 6.049149 GGAAGTGTCTTGTAAGCATGCTATA 58.951 40.000 23.00 12.63 0.00 1.31
1653 1859 4.878397 GGAAGTGTCTTGTAAGCATGCTAT 59.122 41.667 23.00 13.67 0.00 2.97
1654 1860 4.253685 GGAAGTGTCTTGTAAGCATGCTA 58.746 43.478 23.00 1.69 0.00 3.49
1655 1861 3.077359 GGAAGTGTCTTGTAAGCATGCT 58.923 45.455 16.30 16.30 0.00 3.79
1656 1862 2.159653 CGGAAGTGTCTTGTAAGCATGC 60.160 50.000 10.51 10.51 0.00 4.06
1657 1863 3.067106 ACGGAAGTGTCTTGTAAGCATG 58.933 45.455 0.00 0.00 46.97 4.06
1658 1864 3.006967 AGACGGAAGTGTCTTGTAAGCAT 59.993 43.478 0.00 0.00 46.85 3.79
1659 1865 2.364324 AGACGGAAGTGTCTTGTAAGCA 59.636 45.455 0.00 0.00 46.85 3.91
1660 1866 3.027974 AGACGGAAGTGTCTTGTAAGC 57.972 47.619 0.00 0.00 46.85 3.09
1661 1867 5.770417 ACTTAGACGGAAGTGTCTTGTAAG 58.230 41.667 1.31 3.10 46.85 2.34
1662 1868 5.779529 ACTTAGACGGAAGTGTCTTGTAA 57.220 39.130 1.31 0.00 46.85 2.41
1663 1869 5.533903 AGAACTTAGACGGAAGTGTCTTGTA 59.466 40.000 1.31 0.00 46.85 2.41
1664 1870 4.341520 AGAACTTAGACGGAAGTGTCTTGT 59.658 41.667 1.31 0.00 46.85 3.16
1665 1871 4.872664 AGAACTTAGACGGAAGTGTCTTG 58.127 43.478 1.31 0.00 46.85 3.02
1666 1872 4.022155 GGAGAACTTAGACGGAAGTGTCTT 60.022 45.833 1.31 0.00 46.85 3.01
1672 1878 4.660105 CTTACGGAGAACTTAGACGGAAG 58.340 47.826 0.00 0.00 38.87 3.46
1673 1879 3.119708 GCTTACGGAGAACTTAGACGGAA 60.120 47.826 0.00 0.00 0.00 4.30
1674 1880 2.421424 GCTTACGGAGAACTTAGACGGA 59.579 50.000 0.00 0.00 0.00 4.69
1675 1881 2.163010 TGCTTACGGAGAACTTAGACGG 59.837 50.000 0.00 0.00 0.00 4.79
1676 1882 3.482722 TGCTTACGGAGAACTTAGACG 57.517 47.619 0.00 0.00 0.00 4.18
1677 1883 4.113354 CCATGCTTACGGAGAACTTAGAC 58.887 47.826 0.00 0.00 0.00 2.59
1678 1884 4.021229 TCCATGCTTACGGAGAACTTAGA 58.979 43.478 0.00 0.00 0.00 2.10
1679 1885 4.386867 TCCATGCTTACGGAGAACTTAG 57.613 45.455 0.00 0.00 0.00 2.18
1688 1894 3.194861 TCGAAAATCTCCATGCTTACGG 58.805 45.455 0.00 0.00 0.00 4.02
1692 1898 1.667724 CGCTCGAAAATCTCCATGCTT 59.332 47.619 0.00 0.00 0.00 3.91
1914 2121 1.743772 GCCCATGTCTGCGATGTAGTT 60.744 52.381 0.00 0.00 0.00 2.24
2027 2235 1.691976 ACAACGAATGTCCCACTCAGA 59.308 47.619 0.00 0.00 37.96 3.27
2109 2317 2.746362 GGAGGACGTTCGTTCTTAGAGA 59.254 50.000 7.59 0.00 0.00 3.10
2114 2322 0.033090 GGTGGAGGACGTTCGTTCTT 59.967 55.000 7.59 0.00 0.00 2.52
2140 2349 1.665599 GGTTTCGAACCGGAAGCGA 60.666 57.895 9.46 11.46 42.62 4.93
2188 2397 3.499737 CACCGAGCAATCACCGCC 61.500 66.667 0.00 0.00 0.00 6.13
2242 2451 3.241530 TGCCAGGAGTCAACGGCT 61.242 61.111 15.30 0.00 45.13 5.52
2280 2489 3.246094 ACCCCATCCTTTCATGAATTGGT 60.246 43.478 20.53 12.24 0.00 3.67
2303 2513 0.761702 ATATCCCGGCCCACGTTAGT 60.762 55.000 0.00 0.00 42.24 2.24
2356 2566 2.045242 CGGAGGTCGAGGGTCTGA 60.045 66.667 0.00 0.00 42.43 3.27
2481 2691 4.101119 CCTTGAGGACCCAATTCTACGTAT 59.899 45.833 0.00 0.00 37.39 3.06
2486 2696 3.115390 CTCCCTTGAGGACCCAATTCTA 58.885 50.000 0.00 0.00 40.93 2.10
2527 2737 1.451927 GCCATTGGCGATGACCTGA 60.452 57.895 16.49 0.00 39.62 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.