Multiple sequence alignment - TraesCS7D01G321800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G321800 chr7D 100.000 3418 0 0 1 3418 412104974 412101557 0.000000e+00 6312.0
1 TraesCS7D01G321800 chr7D 85.317 1294 160 18 1067 2335 412017810 412016522 0.000000e+00 1310.0
2 TraesCS7D01G321800 chr7D 80.049 406 55 12 2868 3254 412016233 412015835 9.340000e-71 278.0
3 TraesCS7D01G321800 chr7D 80.576 139 22 2 2482 2615 412016355 412016217 6.030000e-18 102.0
4 TraesCS7D01G321800 chr7B 95.643 2364 69 11 1056 3389 426527645 426525286 0.000000e+00 3764.0
5 TraesCS7D01G321800 chr7B 85.460 1293 160 14 1067 2335 426369123 426367835 0.000000e+00 1321.0
6 TraesCS7D01G321800 chr7B 80.296 406 54 13 2868 3254 426367514 426367116 2.010000e-72 283.0
7 TraesCS7D01G321800 chr7B 76.238 505 114 6 165 667 484484811 484484311 2.620000e-66 263.0
8 TraesCS7D01G321800 chr7B 80.576 139 22 2 2482 2615 426367636 426367498 6.030000e-18 102.0
9 TraesCS7D01G321800 chr7A 94.963 1886 72 11 963 2829 473238546 473236665 0.000000e+00 2935.0
10 TraesCS7D01G321800 chr7A 85.103 1309 162 17 1055 2335 473025217 473023914 0.000000e+00 1306.0
11 TraesCS7D01G321800 chr7A 83.570 493 46 19 498 964 473239829 473239346 2.440000e-116 429.0
12 TraesCS7D01G321800 chr7A 82.087 508 56 14 1 500 473331365 473330885 5.310000e-108 401.0
13 TraesCS7D01G321800 chr7A 84.571 175 20 5 2993 3161 473023368 473023195 2.110000e-37 167.0
14 TraesCS7D01G321800 chr7A 98.148 54 1 0 2828 2881 473236514 473236461 1.010000e-15 95.3
15 TraesCS7D01G321800 chr5D 73.211 601 115 34 32 618 498316303 498316871 3.510000e-40 176.0
16 TraesCS7D01G321800 chr5D 92.982 57 4 0 3332 3388 118571963 118571907 2.190000e-12 84.2
17 TraesCS7D01G321800 chr5D 91.228 57 5 0 3331 3387 461978557 461978613 1.020000e-10 78.7
18 TraesCS7D01G321800 chrUn 83.708 178 24 3 1124 1299 32127046 32126872 2.730000e-36 163.0
19 TraesCS7D01G321800 chr3A 72.951 488 106 18 27 499 472803969 472804445 2.750000e-31 147.0
20 TraesCS7D01G321800 chr3A 91.011 89 6 2 1141 1228 697585467 697585380 5.990000e-23 119.0
21 TraesCS7D01G321800 chr3B 81.529 157 19 9 1144 1296 749685540 749685390 1.670000e-23 121.0
22 TraesCS7D01G321800 chr3B 91.228 57 5 0 3331 3387 171696875 171696931 1.020000e-10 78.7
23 TraesCS7D01G321800 chr2A 95.161 62 3 0 3330 3391 21236713 21236652 7.810000e-17 99.0
24 TraesCS7D01G321800 chr4B 93.220 59 4 0 3331 3389 643651328 643651386 1.690000e-13 87.9
25 TraesCS7D01G321800 chr4B 93.103 58 3 1 3332 3389 22844038 22844094 2.190000e-12 84.2
26 TraesCS7D01G321800 chr4A 93.103 58 4 0 3332 3389 590228010 590227953 6.080000e-13 86.1
27 TraesCS7D01G321800 chr5A 91.379 58 5 0 3332 3389 476958895 476958952 2.830000e-11 80.5
28 TraesCS7D01G321800 chr2B 88.710 62 5 2 158 218 626105580 626105640 1.320000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G321800 chr7D 412101557 412104974 3417 True 6312.000000 6312 100.000000 1 3418 1 chr7D.!!$R1 3417
1 TraesCS7D01G321800 chr7D 412015835 412017810 1975 True 563.333333 1310 81.980667 1067 3254 3 chr7D.!!$R2 2187
2 TraesCS7D01G321800 chr7B 426525286 426527645 2359 True 3764.000000 3764 95.643000 1056 3389 1 chr7B.!!$R1 2333
3 TraesCS7D01G321800 chr7B 426367116 426369123 2007 True 568.666667 1321 82.110667 1067 3254 3 chr7B.!!$R3 2187
4 TraesCS7D01G321800 chr7B 484484311 484484811 500 True 263.000000 263 76.238000 165 667 1 chr7B.!!$R2 502
5 TraesCS7D01G321800 chr7A 473236461 473239829 3368 True 1153.100000 2935 92.227000 498 2881 3 chr7A.!!$R3 2383
6 TraesCS7D01G321800 chr7A 473023195 473025217 2022 True 736.500000 1306 84.837000 1055 3161 2 chr7A.!!$R2 2106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.035056 GCACTATTGGTGGGAGCAGT 60.035 55.0 2.14 0.00 45.44 4.40 F
114 115 0.035056 ACTATTGGTGGGAGCAGTGC 60.035 55.0 7.13 7.13 0.00 4.40 F
115 116 0.035152 CTATTGGTGGGAGCAGTGCA 60.035 55.0 19.20 0.00 0.00 4.57 F
734 743 0.106519 AGGCTCTGTTGTGCAAGGTT 60.107 50.0 0.00 0.00 34.68 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1045 1873 0.036010 AAACACCGCAGAGCATAGCT 60.036 50.000 0.00 0.0 43.88 3.32 R
1919 2784 1.748122 CCAGCTGTGGTGATCCTGC 60.748 63.158 13.81 0.0 39.30 4.85 R
2304 3171 2.968737 AGTGACTCACTCCTGCGAT 58.031 52.632 5.82 0.0 41.21 4.58 R
2708 3789 0.034756 TCTCGCCAAAGCTGCAACTA 59.965 50.000 1.02 0.0 36.60 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.602104 CCCATCTCCATTTGCCACT 57.398 52.632 0.00 0.00 0.00 4.00
19 20 1.396653 CCCATCTCCATTTGCCACTC 58.603 55.000 0.00 0.00 0.00 3.51
20 21 1.019673 CCATCTCCATTTGCCACTCG 58.980 55.000 0.00 0.00 0.00 4.18
21 22 1.679944 CCATCTCCATTTGCCACTCGT 60.680 52.381 0.00 0.00 0.00 4.18
22 23 1.399440 CATCTCCATTTGCCACTCGTG 59.601 52.381 0.00 0.00 0.00 4.35
23 24 0.684535 TCTCCATTTGCCACTCGTGA 59.315 50.000 0.00 0.00 0.00 4.35
24 25 1.081892 CTCCATTTGCCACTCGTGAG 58.918 55.000 0.00 0.00 0.00 3.51
25 26 0.684535 TCCATTTGCCACTCGTGAGA 59.315 50.000 3.44 0.00 39.12 3.27
35 36 4.075793 TCGTGAGAGGGGAGGGGG 62.076 72.222 0.00 0.00 34.84 5.40
50 51 3.090532 GGGCGGGATCCCAGTTCT 61.091 66.667 30.42 0.00 45.82 3.01
51 52 2.506472 GGCGGGATCCCAGTTCTC 59.494 66.667 30.42 10.97 35.37 2.87
52 53 2.066999 GGCGGGATCCCAGTTCTCT 61.067 63.158 30.42 0.00 35.37 3.10
53 54 1.443828 GCGGGATCCCAGTTCTCTC 59.556 63.158 30.42 5.87 35.37 3.20
54 55 1.045911 GCGGGATCCCAGTTCTCTCT 61.046 60.000 30.42 0.00 35.37 3.10
55 56 1.490574 CGGGATCCCAGTTCTCTCTT 58.509 55.000 30.42 0.00 35.37 2.85
56 57 1.137872 CGGGATCCCAGTTCTCTCTTG 59.862 57.143 30.42 5.54 35.37 3.02
57 58 1.488393 GGGATCCCAGTTCTCTCTTGG 59.512 57.143 26.95 0.00 35.81 3.61
58 59 1.134250 GGATCCCAGTTCTCTCTTGGC 60.134 57.143 0.00 0.00 0.00 4.52
59 60 1.836802 GATCCCAGTTCTCTCTTGGCT 59.163 52.381 0.00 0.00 0.00 4.75
60 61 1.734655 TCCCAGTTCTCTCTTGGCTT 58.265 50.000 0.00 0.00 0.00 4.35
61 62 1.349026 TCCCAGTTCTCTCTTGGCTTG 59.651 52.381 0.00 0.00 0.00 4.01
62 63 1.072965 CCCAGTTCTCTCTTGGCTTGT 59.927 52.381 0.00 0.00 0.00 3.16
63 64 2.303022 CCCAGTTCTCTCTTGGCTTGTA 59.697 50.000 0.00 0.00 0.00 2.41
64 65 3.244561 CCCAGTTCTCTCTTGGCTTGTAA 60.245 47.826 0.00 0.00 0.00 2.41
65 66 4.389374 CCAGTTCTCTCTTGGCTTGTAAA 58.611 43.478 0.00 0.00 0.00 2.01
66 67 5.006386 CCAGTTCTCTCTTGGCTTGTAAAT 58.994 41.667 0.00 0.00 0.00 1.40
67 68 6.173339 CCAGTTCTCTCTTGGCTTGTAAATA 58.827 40.000 0.00 0.00 0.00 1.40
68 69 6.314896 CCAGTTCTCTCTTGGCTTGTAAATAG 59.685 42.308 0.00 0.00 0.00 1.73
69 70 6.876257 CAGTTCTCTCTTGGCTTGTAAATAGT 59.124 38.462 0.00 0.00 0.00 2.12
70 71 7.064016 CAGTTCTCTCTTGGCTTGTAAATAGTC 59.936 40.741 0.00 0.00 0.00 2.59
71 72 6.605471 TCTCTCTTGGCTTGTAAATAGTCA 57.395 37.500 0.00 0.00 0.00 3.41
72 73 7.187824 TCTCTCTTGGCTTGTAAATAGTCAT 57.812 36.000 0.00 0.00 0.00 3.06
73 74 8.306313 TCTCTCTTGGCTTGTAAATAGTCATA 57.694 34.615 0.00 0.00 0.00 2.15
74 75 8.417106 TCTCTCTTGGCTTGTAAATAGTCATAG 58.583 37.037 0.00 0.00 0.00 2.23
75 76 7.500992 TCTCTTGGCTTGTAAATAGTCATAGG 58.499 38.462 0.00 0.00 0.00 2.57
76 77 6.591935 TCTTGGCTTGTAAATAGTCATAGGG 58.408 40.000 0.00 0.00 0.00 3.53
77 78 5.304686 TGGCTTGTAAATAGTCATAGGGG 57.695 43.478 0.00 0.00 0.00 4.79
78 79 4.104102 TGGCTTGTAAATAGTCATAGGGGG 59.896 45.833 0.00 0.00 0.00 5.40
79 80 4.104261 GGCTTGTAAATAGTCATAGGGGGT 59.896 45.833 0.00 0.00 0.00 4.95
80 81 5.308759 GGCTTGTAAATAGTCATAGGGGGTA 59.691 44.000 0.00 0.00 0.00 3.69
81 82 6.465084 GCTTGTAAATAGTCATAGGGGGTAG 58.535 44.000 0.00 0.00 0.00 3.18
82 83 6.042897 GCTTGTAAATAGTCATAGGGGGTAGT 59.957 42.308 0.00 0.00 0.00 2.73
83 84 6.989155 TGTAAATAGTCATAGGGGGTAGTG 57.011 41.667 0.00 0.00 0.00 2.74
84 85 6.446451 TGTAAATAGTCATAGGGGGTAGTGT 58.554 40.000 0.00 0.00 0.00 3.55
85 86 5.888982 AAATAGTCATAGGGGGTAGTGTG 57.111 43.478 0.00 0.00 0.00 3.82
86 87 2.942604 AGTCATAGGGGGTAGTGTGT 57.057 50.000 0.00 0.00 0.00 3.72
87 88 3.200958 AGTCATAGGGGGTAGTGTGTT 57.799 47.619 0.00 0.00 0.00 3.32
88 89 3.105283 AGTCATAGGGGGTAGTGTGTTC 58.895 50.000 0.00 0.00 0.00 3.18
89 90 3.105283 GTCATAGGGGGTAGTGTGTTCT 58.895 50.000 0.00 0.00 0.00 3.01
90 91 3.104512 TCATAGGGGGTAGTGTGTTCTG 58.895 50.000 0.00 0.00 0.00 3.02
91 92 1.272807 TAGGGGGTAGTGTGTTCTGC 58.727 55.000 0.00 0.00 0.00 4.26
92 93 0.473886 AGGGGGTAGTGTGTTCTGCT 60.474 55.000 0.00 0.00 0.00 4.24
93 94 0.321653 GGGGGTAGTGTGTTCTGCTG 60.322 60.000 0.00 0.00 0.00 4.41
94 95 0.955919 GGGGTAGTGTGTTCTGCTGC 60.956 60.000 0.00 0.00 0.00 5.25
95 96 0.250295 GGGTAGTGTGTTCTGCTGCA 60.250 55.000 0.88 0.88 0.00 4.41
96 97 0.868406 GGTAGTGTGTTCTGCTGCAC 59.132 55.000 0.00 0.00 36.26 4.57
97 98 1.541233 GGTAGTGTGTTCTGCTGCACT 60.541 52.381 0.00 0.00 43.55 4.40
98 99 2.288825 GGTAGTGTGTTCTGCTGCACTA 60.289 50.000 0.00 0.00 41.67 2.74
99 100 2.847327 AGTGTGTTCTGCTGCACTAT 57.153 45.000 0.00 0.00 40.00 2.12
100 101 3.131709 AGTGTGTTCTGCTGCACTATT 57.868 42.857 0.00 0.00 40.00 1.73
101 102 2.810274 AGTGTGTTCTGCTGCACTATTG 59.190 45.455 0.00 0.00 40.00 1.90
102 103 2.095567 GTGTGTTCTGCTGCACTATTGG 60.096 50.000 0.00 0.00 36.63 3.16
103 104 2.154462 GTGTTCTGCTGCACTATTGGT 58.846 47.619 0.00 0.00 33.22 3.67
105 106 1.470098 GTTCTGCTGCACTATTGGTGG 59.530 52.381 0.00 0.00 45.44 4.61
106 107 0.035152 TCTGCTGCACTATTGGTGGG 60.035 55.000 0.00 0.00 45.44 4.61
107 108 0.035152 CTGCTGCACTATTGGTGGGA 60.035 55.000 0.00 0.00 45.44 4.37
108 109 0.035152 TGCTGCACTATTGGTGGGAG 60.035 55.000 0.00 0.00 45.44 4.30
109 110 1.379642 GCTGCACTATTGGTGGGAGC 61.380 60.000 2.14 2.08 45.44 4.70
110 111 0.035152 CTGCACTATTGGTGGGAGCA 60.035 55.000 2.14 0.00 45.44 4.26
111 112 0.035152 TGCACTATTGGTGGGAGCAG 60.035 55.000 2.14 0.00 45.44 4.24
112 113 0.035056 GCACTATTGGTGGGAGCAGT 60.035 55.000 2.14 0.00 45.44 4.40
113 114 1.742761 CACTATTGGTGGGAGCAGTG 58.257 55.000 0.00 0.00 41.90 3.66
114 115 0.035056 ACTATTGGTGGGAGCAGTGC 60.035 55.000 7.13 7.13 0.00 4.40
115 116 0.035152 CTATTGGTGGGAGCAGTGCA 60.035 55.000 19.20 0.00 0.00 4.57
116 117 0.322456 TATTGGTGGGAGCAGTGCAC 60.322 55.000 19.20 9.40 0.00 4.57
117 118 3.976497 TATTGGTGGGAGCAGTGCACG 62.976 57.143 19.20 7.77 0.00 5.34
121 122 4.767255 GGGAGCAGTGCACGGGAG 62.767 72.222 19.20 8.06 0.00 4.30
122 123 3.695606 GGAGCAGTGCACGGGAGA 61.696 66.667 19.20 0.00 0.00 3.71
123 124 2.343758 GAGCAGTGCACGGGAGAA 59.656 61.111 19.20 0.00 0.00 2.87
124 125 1.078848 GAGCAGTGCACGGGAGAAT 60.079 57.895 19.20 0.00 0.00 2.40
125 126 0.175760 GAGCAGTGCACGGGAGAATA 59.824 55.000 19.20 0.00 0.00 1.75
126 127 0.613260 AGCAGTGCACGGGAGAATAA 59.387 50.000 19.20 0.00 0.00 1.40
127 128 1.210478 AGCAGTGCACGGGAGAATAAT 59.790 47.619 19.20 0.00 0.00 1.28
128 129 1.599542 GCAGTGCACGGGAGAATAATC 59.400 52.381 18.78 0.00 0.00 1.75
129 130 2.213499 CAGTGCACGGGAGAATAATCC 58.787 52.381 12.01 0.00 38.76 3.01
131 132 0.531974 TGCACGGGAGAATAATCCGC 60.532 55.000 0.00 0.00 46.87 5.54
132 133 0.531974 GCACGGGAGAATAATCCGCA 60.532 55.000 0.00 0.00 46.87 5.69
133 134 1.948104 CACGGGAGAATAATCCGCAA 58.052 50.000 0.00 0.00 46.87 4.85
134 135 1.597663 CACGGGAGAATAATCCGCAAC 59.402 52.381 0.00 0.00 46.87 4.17
135 136 1.208535 ACGGGAGAATAATCCGCAACA 59.791 47.619 0.00 0.00 46.87 3.33
136 137 1.867233 CGGGAGAATAATCCGCAACAG 59.133 52.381 0.00 0.00 40.56 3.16
137 138 1.604278 GGGAGAATAATCCGCAACAGC 59.396 52.381 0.00 0.00 40.56 4.40
138 139 2.565841 GGAGAATAATCCGCAACAGCT 58.434 47.619 0.00 0.00 0.00 4.24
139 140 2.545946 GGAGAATAATCCGCAACAGCTC 59.454 50.000 0.00 0.00 0.00 4.09
140 141 2.545946 GAGAATAATCCGCAACAGCTCC 59.454 50.000 0.00 0.00 0.00 4.70
141 142 2.092968 AGAATAATCCGCAACAGCTCCA 60.093 45.455 0.00 0.00 0.00 3.86
142 143 2.645838 ATAATCCGCAACAGCTCCAT 57.354 45.000 0.00 0.00 0.00 3.41
143 144 2.418368 TAATCCGCAACAGCTCCATT 57.582 45.000 0.00 0.00 0.00 3.16
144 145 1.098050 AATCCGCAACAGCTCCATTC 58.902 50.000 0.00 0.00 0.00 2.67
145 146 0.749454 ATCCGCAACAGCTCCATTCC 60.749 55.000 0.00 0.00 0.00 3.01
146 147 2.409870 CCGCAACAGCTCCATTCCC 61.410 63.158 0.00 0.00 0.00 3.97
147 148 1.675310 CGCAACAGCTCCATTCCCA 60.675 57.895 0.00 0.00 0.00 4.37
148 149 1.885871 GCAACAGCTCCATTCCCAC 59.114 57.895 0.00 0.00 0.00 4.61
149 150 1.926511 GCAACAGCTCCATTCCCACG 61.927 60.000 0.00 0.00 0.00 4.94
150 151 1.675641 AACAGCTCCATTCCCACGC 60.676 57.895 0.00 0.00 0.00 5.34
151 152 2.825836 CAGCTCCATTCCCACGCC 60.826 66.667 0.00 0.00 0.00 5.68
152 153 4.473520 AGCTCCATTCCCACGCCG 62.474 66.667 0.00 0.00 0.00 6.46
154 155 4.096003 CTCCATTCCCACGCCGGT 62.096 66.667 1.90 0.00 0.00 5.28
155 156 4.402528 TCCATTCCCACGCCGGTG 62.403 66.667 14.93 14.93 43.99 4.94
173 174 3.502920 GGTGACGTCTCAGAGTTGTATG 58.497 50.000 17.92 0.00 0.00 2.39
175 176 2.094700 TGACGTCTCAGAGTTGTATGCC 60.095 50.000 17.92 0.00 0.00 4.40
176 177 1.893137 ACGTCTCAGAGTTGTATGCCA 59.107 47.619 0.00 0.00 0.00 4.92
187 188 0.536724 TGTATGCCATGTCTGCTCGT 59.463 50.000 0.00 0.00 0.00 4.18
190 191 1.948721 ATGCCATGTCTGCTCGTCGA 61.949 55.000 0.00 0.00 0.00 4.20
206 207 4.663444 GATCCTTCAGATCGGCGG 57.337 61.111 7.21 0.00 42.06 6.13
207 208 1.742768 GATCCTTCAGATCGGCGGT 59.257 57.895 7.21 0.00 42.06 5.68
208 209 0.598680 GATCCTTCAGATCGGCGGTG 60.599 60.000 7.21 2.46 42.06 4.94
219 220 2.036571 CGGCGGTGTTAGGTTTCCC 61.037 63.158 0.00 0.00 0.00 3.97
220 221 1.073548 GGCGGTGTTAGGTTTCCCA 59.926 57.895 0.00 0.00 0.00 4.37
223 224 1.804601 CGGTGTTAGGTTTCCCAGTC 58.195 55.000 0.00 0.00 0.00 3.51
226 227 2.410939 GTGTTAGGTTTCCCAGTCGAC 58.589 52.381 7.70 7.70 0.00 4.20
245 246 2.723116 TCGGCAAGACAACGACGA 59.277 55.556 0.00 0.00 0.00 4.20
246 247 1.287815 TCGGCAAGACAACGACGAT 59.712 52.632 0.00 0.00 0.00 3.73
254 255 3.138205 AGACAACGACGATGACATCTC 57.862 47.619 12.41 8.82 0.00 2.75
256 257 1.544246 ACAACGACGATGACATCTCCA 59.456 47.619 12.41 0.00 0.00 3.86
257 258 1.920574 CAACGACGATGACATCTCCAC 59.079 52.381 13.45 1.90 0.00 4.02
258 259 1.464734 ACGACGATGACATCTCCACT 58.535 50.000 13.45 0.00 0.00 4.00
262 263 2.166459 GACGATGACATCTCCACTGGAA 59.834 50.000 13.45 0.00 0.00 3.53
263 264 2.567169 ACGATGACATCTCCACTGGAAA 59.433 45.455 13.45 0.00 0.00 3.13
267 268 5.448225 CGATGACATCTCCACTGGAAATTTG 60.448 44.000 13.45 0.00 0.00 2.32
272 273 4.437682 TCTCCACTGGAAATTTGTGTCT 57.562 40.909 0.00 0.00 0.00 3.41
274 275 5.200483 TCTCCACTGGAAATTTGTGTCTTT 58.800 37.500 0.00 0.00 0.00 2.52
275 276 5.067674 TCTCCACTGGAAATTTGTGTCTTTG 59.932 40.000 0.00 0.00 0.00 2.77
277 278 4.805192 CCACTGGAAATTTGTGTCTTTGTG 59.195 41.667 0.00 0.00 0.00 3.33
278 279 5.410067 CACTGGAAATTTGTGTCTTTGTGT 58.590 37.500 0.00 0.00 0.00 3.72
280 281 6.368516 CACTGGAAATTTGTGTCTTTGTGTTT 59.631 34.615 0.00 0.00 0.00 2.83
282 283 6.459066 TGGAAATTTGTGTCTTTGTGTTTCA 58.541 32.000 0.00 0.00 0.00 2.69
285 286 7.254421 GGAAATTTGTGTCTTTGTGTTTCATCC 60.254 37.037 0.00 0.00 0.00 3.51
290 291 2.621526 GTCTTTGTGTTTCATCCCCGTT 59.378 45.455 0.00 0.00 0.00 4.44
291 292 2.621055 TCTTTGTGTTTCATCCCCGTTG 59.379 45.455 0.00 0.00 0.00 4.10
293 294 2.350057 TGTGTTTCATCCCCGTTGAA 57.650 45.000 0.00 0.00 0.00 2.69
297 298 2.227194 GTTTCATCCCCGTTGAAGTGT 58.773 47.619 0.00 0.00 34.76 3.55
298 299 2.621526 GTTTCATCCCCGTTGAAGTGTT 59.378 45.455 0.00 0.00 34.76 3.32
299 300 1.890876 TCATCCCCGTTGAAGTGTTG 58.109 50.000 0.00 0.00 0.00 3.33
300 301 1.142060 TCATCCCCGTTGAAGTGTTGT 59.858 47.619 0.00 0.00 0.00 3.32
301 302 1.953686 CATCCCCGTTGAAGTGTTGTT 59.046 47.619 0.00 0.00 0.00 2.83
304 305 1.474879 CCCCGTTGAAGTGTTGTTGTT 59.525 47.619 0.00 0.00 0.00 2.83
309 310 3.486875 CGTTGAAGTGTTGTTGTTCCCTC 60.487 47.826 0.00 0.00 0.00 4.30
311 312 2.025793 TGAAGTGTTGTTGTTCCCTCCA 60.026 45.455 0.00 0.00 0.00 3.86
326 327 1.202651 CCTCCAACAACGTTGAGGAGT 60.203 52.381 39.64 21.49 44.57 3.85
328 329 3.318017 CTCCAACAACGTTGAGGAGTAG 58.682 50.000 37.62 26.38 42.91 2.57
330 331 2.036733 CCAACAACGTTGAGGAGTAGGA 59.963 50.000 33.66 0.00 0.00 2.94
331 332 3.306780 CCAACAACGTTGAGGAGTAGGAT 60.307 47.826 33.66 5.05 0.00 3.24
333 334 3.162666 ACAACGTTGAGGAGTAGGATGA 58.837 45.455 33.66 0.00 0.00 2.92
335 336 2.803956 ACGTTGAGGAGTAGGATGACA 58.196 47.619 0.00 0.00 0.00 3.58
340 341 5.163550 CGTTGAGGAGTAGGATGACATTGTA 60.164 44.000 0.00 0.00 0.00 2.41
342 343 5.269189 TGAGGAGTAGGATGACATTGTACA 58.731 41.667 0.00 0.00 0.00 2.90
351 352 2.334977 TGACATTGTACAGGAGGTGGT 58.665 47.619 0.00 0.00 0.00 4.16
352 353 2.708861 TGACATTGTACAGGAGGTGGTT 59.291 45.455 0.00 0.00 0.00 3.67
355 356 0.109723 TTGTACAGGAGGTGGTTGGC 59.890 55.000 0.00 0.00 0.00 4.52
357 358 2.589157 TACAGGAGGTGGTTGGCGG 61.589 63.158 0.00 0.00 0.00 6.13
364 365 1.002315 GAGGTGGTTGGCGGTTACTAA 59.998 52.381 0.00 0.00 0.00 2.24
366 367 1.271001 GGTGGTTGGCGGTTACTAACT 60.271 52.381 0.00 0.00 0.00 2.24
369 370 4.064388 GTGGTTGGCGGTTACTAACTTTA 58.936 43.478 0.00 0.00 0.00 1.85
396 398 1.282248 CGTCGTGTGCGGAACAAGAT 61.282 55.000 8.01 0.00 46.77 2.40
397 399 0.163788 GTCGTGTGCGGAACAAGATG 59.836 55.000 8.01 0.00 46.77 2.90
399 401 1.210155 GTGTGCGGAACAAGATGGC 59.790 57.895 0.00 0.00 41.57 4.40
401 403 2.361104 TGCGGAACAAGATGGCCC 60.361 61.111 0.00 0.00 0.00 5.80
414 416 0.541863 ATGGCCCGACTAGAACAAGG 59.458 55.000 0.00 0.00 0.00 3.61
420 422 2.766828 CCCGACTAGAACAAGGGAAGAT 59.233 50.000 0.00 0.00 44.70 2.40
423 425 4.401519 CCGACTAGAACAAGGGAAGATGTA 59.598 45.833 0.00 0.00 0.00 2.29
424 426 5.069251 CCGACTAGAACAAGGGAAGATGTAT 59.931 44.000 0.00 0.00 0.00 2.29
426 428 6.405953 CGACTAGAACAAGGGAAGATGTATGT 60.406 42.308 0.00 0.00 0.00 2.29
432 434 6.814954 ACAAGGGAAGATGTATGTAGATGT 57.185 37.500 0.00 0.00 0.00 3.06
436 438 6.864421 AGGGAAGATGTATGTAGATGTAGGA 58.136 40.000 0.00 0.00 0.00 2.94
438 440 7.958583 AGGGAAGATGTATGTAGATGTAGGATT 59.041 37.037 0.00 0.00 0.00 3.01
443 445 9.601810 AGATGTATGTAGATGTAGGATTTGGTA 57.398 33.333 0.00 0.00 0.00 3.25
457 459 4.757149 GGATTTGGTAATCTTCCTCGATGG 59.243 45.833 0.00 0.00 40.07 3.51
458 460 4.837093 TTTGGTAATCTTCCTCGATGGT 57.163 40.909 0.00 0.00 37.07 3.55
464 466 4.494091 AATCTTCCTCGATGGTGTTGAT 57.506 40.909 0.00 0.00 37.07 2.57
465 467 3.251479 TCTTCCTCGATGGTGTTGATG 57.749 47.619 0.00 0.00 37.07 3.07
466 468 2.567169 TCTTCCTCGATGGTGTTGATGT 59.433 45.455 0.00 0.00 37.07 3.06
473 475 4.888917 TCGATGGTGTTGATGTGAAGTTA 58.111 39.130 0.00 0.00 0.00 2.24
475 477 4.434198 CGATGGTGTTGATGTGAAGTTACG 60.434 45.833 0.00 0.00 0.00 3.18
476 478 4.061357 TGGTGTTGATGTGAAGTTACGA 57.939 40.909 0.00 0.00 0.00 3.43
482 484 4.443913 TGATGTGAAGTTACGAATCCGA 57.556 40.909 0.00 0.00 39.50 4.55
501 503 4.832608 GTCGGGATGGCACGGGAC 62.833 72.222 0.00 0.00 42.43 4.46
563 566 0.966875 TGCGGCATGCCTGATCTTTT 60.967 50.000 33.07 0.00 45.60 2.27
564 567 1.024271 GCGGCATGCCTGATCTTTTA 58.976 50.000 33.07 0.00 37.76 1.52
578 581 4.522789 TGATCTTTTAGTTCACAAAGCCCC 59.477 41.667 0.00 0.00 31.15 5.80
677 680 1.341482 TGGAGGTTGGCAGTTTTGACA 60.341 47.619 0.00 0.00 41.76 3.58
691 694 0.961019 TTGACATGTGCAAGAAGCCC 59.039 50.000 1.15 0.00 44.83 5.19
693 696 1.251251 GACATGTGCAAGAAGCCCTT 58.749 50.000 1.15 0.00 44.83 3.95
705 714 3.856900 AGAAGCCCTTGGGTGTATTTTT 58.143 40.909 7.61 0.00 31.90 1.94
712 721 5.686387 GCCCTTGGGTGTATTTTTGTTTCTT 60.686 40.000 7.61 0.00 0.00 2.52
722 731 8.968242 GTGTATTTTTGTTTCTTTTAGGCTCTG 58.032 33.333 0.00 0.00 0.00 3.35
724 733 9.529325 GTATTTTTGTTTCTTTTAGGCTCTGTT 57.471 29.630 0.00 0.00 0.00 3.16
734 743 0.106519 AGGCTCTGTTGTGCAAGGTT 60.107 50.000 0.00 0.00 34.68 3.50
738 747 2.860136 GCTCTGTTGTGCAAGGTTTTTC 59.140 45.455 0.00 0.00 33.37 2.29
739 748 3.675775 GCTCTGTTGTGCAAGGTTTTTCA 60.676 43.478 0.00 0.00 33.37 2.69
742 751 5.300752 TCTGTTGTGCAAGGTTTTTCAAAA 58.699 33.333 0.00 0.00 0.00 2.44
743 752 5.936956 TCTGTTGTGCAAGGTTTTTCAAAAT 59.063 32.000 0.00 0.00 0.00 1.82
744 753 7.099764 TCTGTTGTGCAAGGTTTTTCAAAATA 58.900 30.769 0.00 0.00 0.00 1.40
745 754 7.277539 TCTGTTGTGCAAGGTTTTTCAAAATAG 59.722 33.333 0.00 0.00 0.00 1.73
747 756 7.389053 TGTTGTGCAAGGTTTTTCAAAATAGTT 59.611 29.630 0.00 0.00 0.00 2.24
748 757 7.301068 TGTGCAAGGTTTTTCAAAATAGTTG 57.699 32.000 0.00 0.00 0.00 3.16
750 759 7.064016 TGTGCAAGGTTTTTCAAAATAGTTGTC 59.936 33.333 0.00 0.00 0.00 3.18
751 760 7.277760 GTGCAAGGTTTTTCAAAATAGTTGTCT 59.722 33.333 0.00 0.00 0.00 3.41
753 762 8.116136 GCAAGGTTTTTCAAAATAGTTGTCTTG 58.884 33.333 0.00 0.00 0.00 3.02
754 763 9.150348 CAAGGTTTTTCAAAATAGTTGTCTTGT 57.850 29.630 0.00 0.00 0.00 3.16
755 764 9.719355 AAGGTTTTTCAAAATAGTTGTCTTGTT 57.281 25.926 0.00 0.00 0.00 2.83
756 765 9.719355 AGGTTTTTCAAAATAGTTGTCTTGTTT 57.281 25.926 0.00 0.00 0.00 2.83
757 766 9.967245 GGTTTTTCAAAATAGTTGTCTTGTTTC 57.033 29.630 0.00 0.00 0.00 2.78
797 809 0.240678 TGTGTGTTCCGAATGCATGC 59.759 50.000 11.82 11.82 0.00 4.06
800 812 2.161410 GTGTGTTCCGAATGCATGCTTA 59.839 45.455 20.33 0.00 0.00 3.09
838 851 4.915085 CGAAAATTTATTTGGCTGACGTGT 59.085 37.500 0.00 0.00 0.00 4.49
847 860 3.889196 TGGCTGACGTGTATTTTGAAC 57.111 42.857 0.00 0.00 0.00 3.18
862 875 8.185505 TGTATTTTGAACGTTTTTCTAGCAGTT 58.814 29.630 0.46 0.00 0.00 3.16
866 879 8.609478 TTTGAACGTTTTTCTAGCAGTTTTAG 57.391 30.769 0.46 0.00 0.00 1.85
897 923 9.715121 ATTTCTTCATAGCAACATGACATTTTT 57.285 25.926 0.00 0.00 34.69 1.94
921 947 4.141287 CTGGGAGAATGATAGTCTCGAGT 58.859 47.826 13.13 0.00 42.13 4.18
925 951 5.048991 GGGAGAATGATAGTCTCGAGTCTTC 60.049 48.000 17.22 13.87 42.13 2.87
930 956 7.973388 AGAATGATAGTCTCGAGTCTTCTTTTG 59.027 37.037 17.22 0.00 0.00 2.44
941 967 5.113502 AGTCTTCTTTTGAGAAAATGCCG 57.886 39.130 0.00 0.00 0.00 5.69
943 969 4.676924 GTCTTCTTTTGAGAAAATGCCGTG 59.323 41.667 0.00 0.00 0.00 4.94
946 972 4.358851 TCTTTTGAGAAAATGCCGTGTTG 58.641 39.130 0.00 0.00 0.00 3.33
951 977 3.071479 GAGAAAATGCCGTGTTGGTCTA 58.929 45.455 0.00 0.00 41.21 2.59
967 1794 5.452078 TGGTCTAAAGAAACTGCCAATTG 57.548 39.130 0.00 0.00 0.00 2.32
974 1801 1.000274 GAAACTGCCAATTGCGAACCT 60.000 47.619 0.00 0.00 45.60 3.50
978 1805 2.179018 CCAATTGCGAACCTGCCG 59.821 61.111 0.00 0.00 0.00 5.69
979 1806 2.625823 CCAATTGCGAACCTGCCGT 61.626 57.895 0.00 0.00 0.00 5.68
980 1807 1.442520 CAATTGCGAACCTGCCGTG 60.443 57.895 0.00 0.00 0.00 4.94
1008 1836 2.256461 CCTGCTTTCGCACTTGGC 59.744 61.111 0.00 0.00 42.25 4.52
1045 1873 3.157087 GCCTTCACCTGAAATCCTGAAA 58.843 45.455 0.00 0.00 33.07 2.69
1582 2435 0.608308 TTGAAGAGAGCCGAGGACGA 60.608 55.000 0.00 0.00 42.66 4.20
1618 2477 4.124351 GCACACCGTCGGATCCGA 62.124 66.667 32.59 32.59 46.87 4.55
1826 2691 5.049818 CGAGTCTTTCCAGCATATGATTTCC 60.050 44.000 6.97 0.00 0.00 3.13
1865 2730 5.415077 CCTTCTTGAGCTGTTTGAGATGAAT 59.585 40.000 0.00 0.00 0.00 2.57
1871 2736 3.755378 AGCTGTTTGAGATGAATGACACC 59.245 43.478 0.00 0.00 0.00 4.16
1919 2784 0.809385 CAGCTGATCTTTGGGTGCTG 59.191 55.000 8.42 0.00 41.15 4.41
2273 3140 7.384660 CCTGATGATAATTCTGAGCTTCACTAC 59.615 40.741 0.00 0.00 0.00 2.73
2304 3171 3.927555 GGACAAGTCCGGTGAATCA 57.072 52.632 0.00 0.00 40.36 2.57
2532 3611 6.321435 GCTTATGGGGCTTATTTAGTTTCTGT 59.679 38.462 0.00 0.00 0.00 3.41
2533 3612 7.639113 TTATGGGGCTTATTTAGTTTCTGTG 57.361 36.000 0.00 0.00 0.00 3.66
2581 3660 2.232756 TTTCGCTGCTGACTTGTGTA 57.767 45.000 0.00 0.00 0.00 2.90
2608 3687 1.166531 GGCAACATTAGCTAGGGCCG 61.167 60.000 0.00 0.00 39.73 6.13
2621 3700 0.690762 AGGGCCGCTTTGTTTCTCTA 59.309 50.000 0.00 0.00 0.00 2.43
2658 3739 5.763204 TGTACTTCAGTGGTTGGATTTCTTC 59.237 40.000 0.00 0.00 0.00 2.87
2708 3789 2.020720 TGGTGCAATGACGACAAGTTT 58.979 42.857 0.00 0.00 0.00 2.66
2745 3827 4.561530 GCGAGATTTGGAGGCATATAGTCA 60.562 45.833 0.00 0.00 0.00 3.41
2769 3851 7.824289 TCATAGTCATAGTCTCCCTTTTGTTTG 59.176 37.037 0.00 0.00 0.00 2.93
2884 4119 7.539034 AAAATAATGCTAGGGTCACTTTGTT 57.461 32.000 0.00 0.00 0.00 2.83
2887 4122 9.914834 AAATAATGCTAGGGTCACTTTGTTATA 57.085 29.630 0.00 0.00 0.00 0.98
2991 4240 4.819769 AGCACTTGAGCTCAAAAACAAAA 58.180 34.783 28.16 5.46 42.18 2.44
3267 4541 1.148310 GATACACTGCTTGCGTGTGT 58.852 50.000 22.80 21.83 44.63 3.72
3339 4615 3.248888 GGTATATGCCAGGTACTCCCTT 58.751 50.000 4.76 0.00 42.73 3.95
3342 4618 0.617820 ATGCCAGGTACTCCCTTCGT 60.618 55.000 0.00 0.00 42.73 3.85
3347 4623 2.379972 CAGGTACTCCCTTCGTCTCAT 58.620 52.381 0.00 0.00 42.73 2.90
3389 4665 6.876804 CAAACTAACATAGCTTGCAAAAACC 58.123 36.000 0.00 0.00 0.00 3.27
3390 4666 6.405278 AACTAACATAGCTTGCAAAAACCT 57.595 33.333 0.00 0.00 0.00 3.50
3391 4667 7.519032 AACTAACATAGCTTGCAAAAACCTA 57.481 32.000 0.00 0.00 0.00 3.08
3392 4668 7.145932 ACTAACATAGCTTGCAAAAACCTAG 57.854 36.000 0.00 0.00 0.00 3.02
3393 4669 4.440839 ACATAGCTTGCAAAAACCTAGC 57.559 40.909 0.00 0.00 0.00 3.42
3394 4670 4.082125 ACATAGCTTGCAAAAACCTAGCT 58.918 39.130 11.29 11.29 42.46 3.32
3395 4671 5.253330 ACATAGCTTGCAAAAACCTAGCTA 58.747 37.500 14.56 14.56 43.82 3.32
3396 4672 5.710099 ACATAGCTTGCAAAAACCTAGCTAA 59.290 36.000 15.80 3.09 43.27 3.09
3397 4673 6.378280 ACATAGCTTGCAAAAACCTAGCTAAT 59.622 34.615 15.80 6.81 43.27 1.73
3398 4674 5.064441 AGCTTGCAAAAACCTAGCTAATG 57.936 39.130 5.02 0.00 39.10 1.90
3399 4675 4.524328 AGCTTGCAAAAACCTAGCTAATGT 59.476 37.500 5.02 0.00 39.10 2.71
3400 4676 5.011023 AGCTTGCAAAAACCTAGCTAATGTT 59.989 36.000 5.02 0.00 39.10 2.71
3401 4677 5.119125 GCTTGCAAAAACCTAGCTAATGTTG 59.881 40.000 0.00 4.77 0.00 3.33
3402 4678 4.555262 TGCAAAAACCTAGCTAATGTTGC 58.445 39.130 16.36 16.36 40.33 4.17
3403 4679 3.926527 GCAAAAACCTAGCTAATGTTGCC 59.073 43.478 13.84 2.25 35.28 4.52
3404 4680 4.321974 GCAAAAACCTAGCTAATGTTGCCT 60.322 41.667 13.84 0.00 35.28 4.75
3405 4681 5.402398 CAAAAACCTAGCTAATGTTGCCTC 58.598 41.667 8.61 0.00 0.00 4.70
3406 4682 3.283259 AACCTAGCTAATGTTGCCTCC 57.717 47.619 7.35 0.00 0.00 4.30
3407 4683 2.482494 ACCTAGCTAATGTTGCCTCCT 58.518 47.619 0.00 0.00 0.00 3.69
3408 4684 2.846827 ACCTAGCTAATGTTGCCTCCTT 59.153 45.455 0.00 0.00 0.00 3.36
3409 4685 3.118223 ACCTAGCTAATGTTGCCTCCTTC 60.118 47.826 0.00 0.00 0.00 3.46
3410 4686 2.029838 AGCTAATGTTGCCTCCTTCG 57.970 50.000 0.00 0.00 0.00 3.79
3411 4687 1.279271 AGCTAATGTTGCCTCCTTCGT 59.721 47.619 0.00 0.00 0.00 3.85
3412 4688 2.500098 AGCTAATGTTGCCTCCTTCGTA 59.500 45.455 0.00 0.00 0.00 3.43
3413 4689 2.608090 GCTAATGTTGCCTCCTTCGTAC 59.392 50.000 0.00 0.00 0.00 3.67
3414 4690 2.109425 AATGTTGCCTCCTTCGTACC 57.891 50.000 0.00 0.00 0.00 3.34
3415 4691 0.981183 ATGTTGCCTCCTTCGTACCA 59.019 50.000 0.00 0.00 0.00 3.25
3416 4692 0.759959 TGTTGCCTCCTTCGTACCAA 59.240 50.000 0.00 0.00 0.00 3.67
3417 4693 1.141254 TGTTGCCTCCTTCGTACCAAA 59.859 47.619 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.396653 GAGTGGCAAATGGAGATGGG 58.603 55.000 0.00 0.00 0.00 4.00
1 2 1.019673 CGAGTGGCAAATGGAGATGG 58.980 55.000 0.00 0.00 0.00 3.51
2 3 1.399440 CACGAGTGGCAAATGGAGATG 59.601 52.381 0.00 0.00 0.00 2.90
4 5 0.684535 TCACGAGTGGCAAATGGAGA 59.315 50.000 3.19 0.00 0.00 3.71
5 6 1.081892 CTCACGAGTGGCAAATGGAG 58.918 55.000 3.19 0.00 0.00 3.86
6 7 0.684535 TCTCACGAGTGGCAAATGGA 59.315 50.000 3.19 0.00 0.00 3.41
7 8 1.081892 CTCTCACGAGTGGCAAATGG 58.918 55.000 3.19 0.00 32.47 3.16
8 9 1.081892 CCTCTCACGAGTGGCAAATG 58.918 55.000 3.19 0.00 35.59 2.32
9 10 0.036010 CCCTCTCACGAGTGGCAAAT 60.036 55.000 9.24 0.00 39.95 2.32
10 11 1.371183 CCCTCTCACGAGTGGCAAA 59.629 57.895 9.24 0.00 39.95 3.68
11 12 2.583441 CCCCTCTCACGAGTGGCAA 61.583 63.158 9.24 0.00 39.95 4.52
12 13 2.997315 CCCCTCTCACGAGTGGCA 60.997 66.667 9.24 0.00 39.95 4.92
13 14 2.680352 TCCCCTCTCACGAGTGGC 60.680 66.667 9.24 0.00 39.95 5.01
14 15 2.055042 CCTCCCCTCTCACGAGTGG 61.055 68.421 7.98 7.98 40.73 4.00
15 16 2.055042 CCCTCCCCTCTCACGAGTG 61.055 68.421 0.00 0.00 35.43 3.51
16 17 2.360980 CCCTCCCCTCTCACGAGT 59.639 66.667 0.00 0.00 35.43 4.18
17 18 2.443016 CCCCTCCCCTCTCACGAG 60.443 72.222 0.00 0.00 37.01 4.18
18 19 4.075793 CCCCCTCCCCTCTCACGA 62.076 72.222 0.00 0.00 0.00 4.35
34 35 2.034048 GAGAGAACTGGGATCCCGCC 62.034 65.000 26.03 13.97 39.42 6.13
35 36 1.045911 AGAGAGAACTGGGATCCCGC 61.046 60.000 26.03 14.61 39.42 6.13
36 37 1.137872 CAAGAGAGAACTGGGATCCCG 59.862 57.143 26.03 21.38 39.42 5.14
37 38 1.488393 CCAAGAGAGAACTGGGATCCC 59.512 57.143 25.22 25.22 33.00 3.85
38 39 1.134250 GCCAAGAGAGAACTGGGATCC 60.134 57.143 1.92 1.92 33.00 3.36
39 40 1.836802 AGCCAAGAGAGAACTGGGATC 59.163 52.381 0.00 0.00 33.00 3.36
40 41 1.963985 AGCCAAGAGAGAACTGGGAT 58.036 50.000 0.00 0.00 33.00 3.85
41 42 1.349026 CAAGCCAAGAGAGAACTGGGA 59.651 52.381 0.00 0.00 33.00 4.37
42 43 1.072965 ACAAGCCAAGAGAGAACTGGG 59.927 52.381 0.00 0.00 34.29 4.45
43 44 2.557920 ACAAGCCAAGAGAGAACTGG 57.442 50.000 0.00 0.00 0.00 4.00
44 45 6.876257 ACTATTTACAAGCCAAGAGAGAACTG 59.124 38.462 0.00 0.00 0.00 3.16
45 46 7.010339 ACTATTTACAAGCCAAGAGAGAACT 57.990 36.000 0.00 0.00 0.00 3.01
46 47 6.874134 TGACTATTTACAAGCCAAGAGAGAAC 59.126 38.462 0.00 0.00 0.00 3.01
47 48 7.004555 TGACTATTTACAAGCCAAGAGAGAA 57.995 36.000 0.00 0.00 0.00 2.87
48 49 6.605471 TGACTATTTACAAGCCAAGAGAGA 57.395 37.500 0.00 0.00 0.00 3.10
49 50 7.655328 CCTATGACTATTTACAAGCCAAGAGAG 59.345 40.741 0.00 0.00 0.00 3.20
50 51 7.419057 CCCTATGACTATTTACAAGCCAAGAGA 60.419 40.741 0.00 0.00 0.00 3.10
51 52 6.708054 CCCTATGACTATTTACAAGCCAAGAG 59.292 42.308 0.00 0.00 0.00 2.85
52 53 6.409234 CCCCTATGACTATTTACAAGCCAAGA 60.409 42.308 0.00 0.00 0.00 3.02
53 54 5.765182 CCCCTATGACTATTTACAAGCCAAG 59.235 44.000 0.00 0.00 0.00 3.61
54 55 5.398581 CCCCCTATGACTATTTACAAGCCAA 60.399 44.000 0.00 0.00 0.00 4.52
55 56 4.104102 CCCCCTATGACTATTTACAAGCCA 59.896 45.833 0.00 0.00 0.00 4.75
56 57 4.104261 ACCCCCTATGACTATTTACAAGCC 59.896 45.833 0.00 0.00 0.00 4.35
57 58 5.306114 ACCCCCTATGACTATTTACAAGC 57.694 43.478 0.00 0.00 0.00 4.01
58 59 7.070821 ACACTACCCCCTATGACTATTTACAAG 59.929 40.741 0.00 0.00 0.00 3.16
59 60 6.904654 ACACTACCCCCTATGACTATTTACAA 59.095 38.462 0.00 0.00 0.00 2.41
60 61 6.325545 CACACTACCCCCTATGACTATTTACA 59.674 42.308 0.00 0.00 0.00 2.41
61 62 6.325804 ACACACTACCCCCTATGACTATTTAC 59.674 42.308 0.00 0.00 0.00 2.01
62 63 6.446451 ACACACTACCCCCTATGACTATTTA 58.554 40.000 0.00 0.00 0.00 1.40
63 64 5.286221 ACACACTACCCCCTATGACTATTT 58.714 41.667 0.00 0.00 0.00 1.40
64 65 4.892198 ACACACTACCCCCTATGACTATT 58.108 43.478 0.00 0.00 0.00 1.73
65 66 4.554553 ACACACTACCCCCTATGACTAT 57.445 45.455 0.00 0.00 0.00 2.12
66 67 4.016851 AGAACACACTACCCCCTATGACTA 60.017 45.833 0.00 0.00 0.00 2.59
67 68 2.942604 ACACACTACCCCCTATGACT 57.057 50.000 0.00 0.00 0.00 3.41
68 69 3.105283 AGAACACACTACCCCCTATGAC 58.895 50.000 0.00 0.00 0.00 3.06
69 70 3.104512 CAGAACACACTACCCCCTATGA 58.895 50.000 0.00 0.00 0.00 2.15
70 71 2.420129 GCAGAACACACTACCCCCTATG 60.420 54.545 0.00 0.00 0.00 2.23
71 72 1.838077 GCAGAACACACTACCCCCTAT 59.162 52.381 0.00 0.00 0.00 2.57
72 73 1.203262 AGCAGAACACACTACCCCCTA 60.203 52.381 0.00 0.00 0.00 3.53
73 74 0.473886 AGCAGAACACACTACCCCCT 60.474 55.000 0.00 0.00 0.00 4.79
74 75 0.321653 CAGCAGAACACACTACCCCC 60.322 60.000 0.00 0.00 0.00 5.40
75 76 0.955919 GCAGCAGAACACACTACCCC 60.956 60.000 0.00 0.00 0.00 4.95
76 77 0.250295 TGCAGCAGAACACACTACCC 60.250 55.000 0.00 0.00 0.00 3.69
77 78 0.868406 GTGCAGCAGAACACACTACC 59.132 55.000 0.00 0.00 36.77 3.18
78 79 1.871080 AGTGCAGCAGAACACACTAC 58.129 50.000 0.00 0.00 41.41 2.73
79 80 3.961480 ATAGTGCAGCAGAACACACTA 57.039 42.857 0.00 4.38 46.42 2.74
80 81 2.810274 CAATAGTGCAGCAGAACACACT 59.190 45.455 0.00 0.00 45.02 3.55
81 82 2.095567 CCAATAGTGCAGCAGAACACAC 60.096 50.000 0.00 0.00 39.30 3.82
82 83 2.153645 CCAATAGTGCAGCAGAACACA 58.846 47.619 0.00 0.00 39.30 3.72
83 84 2.095567 CACCAATAGTGCAGCAGAACAC 60.096 50.000 0.00 0.00 40.28 3.32
84 85 2.153645 CACCAATAGTGCAGCAGAACA 58.846 47.619 0.00 0.00 40.28 3.18
85 86 1.470098 CCACCAATAGTGCAGCAGAAC 59.530 52.381 0.00 0.00 45.83 3.01
86 87 1.614051 CCCACCAATAGTGCAGCAGAA 60.614 52.381 0.00 0.00 45.83 3.02
87 88 0.035152 CCCACCAATAGTGCAGCAGA 60.035 55.000 0.00 0.00 45.83 4.26
88 89 0.035152 TCCCACCAATAGTGCAGCAG 60.035 55.000 0.00 0.00 45.83 4.24
89 90 0.035152 CTCCCACCAATAGTGCAGCA 60.035 55.000 0.00 0.00 45.83 4.41
90 91 1.379642 GCTCCCACCAATAGTGCAGC 61.380 60.000 0.00 0.00 45.83 5.25
91 92 0.035152 TGCTCCCACCAATAGTGCAG 60.035 55.000 0.00 0.00 45.83 4.41
92 93 0.035152 CTGCTCCCACCAATAGTGCA 60.035 55.000 0.00 0.00 45.83 4.57
93 94 0.035056 ACTGCTCCCACCAATAGTGC 60.035 55.000 0.00 0.00 45.83 4.40
94 95 1.742761 CACTGCTCCCACCAATAGTG 58.257 55.000 0.00 0.00 46.83 2.74
95 96 0.035056 GCACTGCTCCCACCAATAGT 60.035 55.000 0.00 0.00 0.00 2.12
96 97 0.035152 TGCACTGCTCCCACCAATAG 60.035 55.000 1.98 0.00 0.00 1.73
97 98 0.322456 GTGCACTGCTCCCACCAATA 60.322 55.000 10.32 0.00 0.00 1.90
98 99 1.604593 GTGCACTGCTCCCACCAAT 60.605 57.895 10.32 0.00 0.00 3.16
99 100 2.203337 GTGCACTGCTCCCACCAA 60.203 61.111 10.32 0.00 0.00 3.67
100 101 4.624364 CGTGCACTGCTCCCACCA 62.624 66.667 16.19 0.00 0.00 4.17
104 105 4.767255 CTCCCGTGCACTGCTCCC 62.767 72.222 16.19 0.00 0.00 4.30
105 106 2.527951 ATTCTCCCGTGCACTGCTCC 62.528 60.000 16.19 0.00 0.00 4.70
106 107 0.175760 TATTCTCCCGTGCACTGCTC 59.824 55.000 16.19 0.00 0.00 4.26
107 108 0.613260 TTATTCTCCCGTGCACTGCT 59.387 50.000 16.19 0.00 0.00 4.24
108 109 1.599542 GATTATTCTCCCGTGCACTGC 59.400 52.381 16.19 0.00 0.00 4.40
109 110 2.213499 GGATTATTCTCCCGTGCACTG 58.787 52.381 16.19 8.49 0.00 3.66
110 111 1.202533 CGGATTATTCTCCCGTGCACT 60.203 52.381 16.19 0.00 38.55 4.40
111 112 1.217882 CGGATTATTCTCCCGTGCAC 58.782 55.000 6.82 6.82 38.55 4.57
112 113 0.531974 GCGGATTATTCTCCCGTGCA 60.532 55.000 0.00 0.00 44.63 4.57
113 114 0.531974 TGCGGATTATTCTCCCGTGC 60.532 55.000 0.00 0.00 44.63 5.34
114 115 1.597663 GTTGCGGATTATTCTCCCGTG 59.402 52.381 0.00 0.00 44.63 4.94
115 116 1.208535 TGTTGCGGATTATTCTCCCGT 59.791 47.619 0.00 0.00 44.63 5.28
116 117 1.867233 CTGTTGCGGATTATTCTCCCG 59.133 52.381 0.00 0.00 45.51 5.14
117 118 1.604278 GCTGTTGCGGATTATTCTCCC 59.396 52.381 0.00 0.00 31.04 4.30
118 119 2.545946 GAGCTGTTGCGGATTATTCTCC 59.454 50.000 0.00 0.00 45.42 3.71
119 120 2.545946 GGAGCTGTTGCGGATTATTCTC 59.454 50.000 0.00 0.00 45.42 2.87
120 121 2.092968 TGGAGCTGTTGCGGATTATTCT 60.093 45.455 0.00 0.00 45.42 2.40
121 122 2.288666 TGGAGCTGTTGCGGATTATTC 58.711 47.619 0.00 0.00 45.42 1.75
122 123 2.418368 TGGAGCTGTTGCGGATTATT 57.582 45.000 0.00 0.00 45.42 1.40
123 124 2.645838 ATGGAGCTGTTGCGGATTAT 57.354 45.000 0.00 0.00 45.42 1.28
124 125 2.288666 GAATGGAGCTGTTGCGGATTA 58.711 47.619 0.00 0.00 45.42 1.75
125 126 1.098050 GAATGGAGCTGTTGCGGATT 58.902 50.000 0.00 0.00 45.42 3.01
126 127 0.749454 GGAATGGAGCTGTTGCGGAT 60.749 55.000 0.00 0.00 45.42 4.18
127 128 1.377202 GGAATGGAGCTGTTGCGGA 60.377 57.895 0.00 0.00 45.42 5.54
128 129 2.409870 GGGAATGGAGCTGTTGCGG 61.410 63.158 0.00 0.00 45.42 5.69
129 130 1.675310 TGGGAATGGAGCTGTTGCG 60.675 57.895 0.00 0.00 45.42 4.85
130 131 1.885871 GTGGGAATGGAGCTGTTGC 59.114 57.895 0.00 0.00 40.05 4.17
131 132 1.926511 GCGTGGGAATGGAGCTGTTG 61.927 60.000 0.00 0.00 0.00 3.33
132 133 1.675641 GCGTGGGAATGGAGCTGTT 60.676 57.895 0.00 0.00 0.00 3.16
133 134 2.045926 GCGTGGGAATGGAGCTGT 60.046 61.111 0.00 0.00 0.00 4.40
134 135 2.825836 GGCGTGGGAATGGAGCTG 60.826 66.667 0.00 0.00 0.00 4.24
135 136 4.473520 CGGCGTGGGAATGGAGCT 62.474 66.667 0.00 0.00 0.00 4.09
137 138 4.096003 ACCGGCGTGGGAATGGAG 62.096 66.667 6.01 0.00 44.64 3.86
138 139 4.402528 CACCGGCGTGGGAATGGA 62.403 66.667 6.01 0.00 44.64 3.41
139 140 4.402528 TCACCGGCGTGGGAATGG 62.403 66.667 6.01 0.00 44.64 3.16
140 141 3.124921 GTCACCGGCGTGGGAATG 61.125 66.667 6.01 0.00 44.64 2.67
141 142 4.752879 CGTCACCGGCGTGGGAAT 62.753 66.667 6.01 0.00 44.64 3.01
149 150 2.143594 AACTCTGAGACGTCACCGGC 62.144 60.000 19.50 2.01 44.68 6.13
150 151 0.387367 CAACTCTGAGACGTCACCGG 60.387 60.000 19.50 13.79 38.78 5.28
151 152 0.311165 ACAACTCTGAGACGTCACCG 59.689 55.000 19.50 8.28 40.83 4.94
152 153 3.502920 CATACAACTCTGAGACGTCACC 58.497 50.000 19.50 9.65 0.00 4.02
153 154 2.917971 GCATACAACTCTGAGACGTCAC 59.082 50.000 19.50 12.69 0.00 3.67
154 155 2.094700 GGCATACAACTCTGAGACGTCA 60.095 50.000 19.50 0.00 0.00 4.35
155 156 2.094700 TGGCATACAACTCTGAGACGTC 60.095 50.000 12.44 7.70 0.00 4.34
156 157 1.893137 TGGCATACAACTCTGAGACGT 59.107 47.619 12.44 9.97 0.00 4.34
157 158 2.654749 TGGCATACAACTCTGAGACG 57.345 50.000 12.44 4.17 0.00 4.18
158 159 3.866651 ACATGGCATACAACTCTGAGAC 58.133 45.455 12.44 0.00 0.00 3.36
159 160 3.771479 AGACATGGCATACAACTCTGAGA 59.229 43.478 12.44 0.00 0.00 3.27
160 161 3.869832 CAGACATGGCATACAACTCTGAG 59.130 47.826 0.00 2.45 38.24 3.35
161 162 3.865446 CAGACATGGCATACAACTCTGA 58.135 45.455 0.00 0.00 38.24 3.27
162 163 2.353889 GCAGACATGGCATACAACTCTG 59.646 50.000 0.00 6.77 38.67 3.35
163 164 2.238144 AGCAGACATGGCATACAACTCT 59.762 45.455 0.00 0.00 0.00 3.24
173 174 1.211818 GATCGACGAGCAGACATGGC 61.212 60.000 8.48 0.00 0.00 4.40
175 176 0.383590 AGGATCGACGAGCAGACATG 59.616 55.000 15.82 0.00 0.00 3.21
176 177 1.066303 GAAGGATCGACGAGCAGACAT 59.934 52.381 15.82 0.00 0.00 3.06
190 191 1.330655 ACACCGCCGATCTGAAGGAT 61.331 55.000 6.71 0.00 37.37 3.24
219 220 2.081212 GTCTTGCCGACGTCGACTG 61.081 63.158 37.65 22.43 43.02 3.51
220 221 2.067091 TTGTCTTGCCGACGTCGACT 62.067 55.000 37.65 0.10 45.87 4.18
223 224 2.844146 GTTGTCTTGCCGACGTCG 59.156 61.111 30.33 30.33 45.87 5.12
226 227 2.844146 GTCGTTGTCTTGCCGACG 59.156 61.111 0.00 0.00 45.87 5.12
233 234 3.502920 GAGATGTCATCGTCGTTGTCTT 58.497 45.455 7.18 0.00 35.01 3.01
238 239 1.819288 AGTGGAGATGTCATCGTCGTT 59.181 47.619 7.18 0.00 35.01 3.85
239 240 1.133216 CAGTGGAGATGTCATCGTCGT 59.867 52.381 7.18 0.00 35.01 4.34
240 241 1.534805 CCAGTGGAGATGTCATCGTCG 60.535 57.143 1.68 0.00 35.01 5.12
242 243 1.852633 TCCAGTGGAGATGTCATCGT 58.147 50.000 8.12 0.00 0.00 3.73
245 246 5.184479 CACAAATTTCCAGTGGAGATGTCAT 59.816 40.000 15.61 0.00 31.21 3.06
246 247 4.520111 CACAAATTTCCAGTGGAGATGTCA 59.480 41.667 15.61 0.00 31.21 3.58
254 255 4.805192 CACAAAGACACAAATTTCCAGTGG 59.195 41.667 1.40 1.40 37.58 4.00
256 257 5.659440 ACACAAAGACACAAATTTCCAGT 57.341 34.783 0.00 0.00 0.00 4.00
257 258 6.589523 TGAAACACAAAGACACAAATTTCCAG 59.410 34.615 0.00 0.00 0.00 3.86
258 259 6.459066 TGAAACACAAAGACACAAATTTCCA 58.541 32.000 0.00 0.00 0.00 3.53
262 263 6.048509 GGGATGAAACACAAAGACACAAATT 58.951 36.000 0.00 0.00 0.00 1.82
263 264 5.453198 GGGGATGAAACACAAAGACACAAAT 60.453 40.000 0.00 0.00 0.00 2.32
267 268 2.031157 CGGGGATGAAACACAAAGACAC 60.031 50.000 0.00 0.00 0.00 3.67
272 273 2.656002 TCAACGGGGATGAAACACAAA 58.344 42.857 0.00 0.00 0.00 2.83
274 275 2.226330 CTTCAACGGGGATGAAACACA 58.774 47.619 0.00 0.00 36.43 3.72
275 276 2.031157 CACTTCAACGGGGATGAAACAC 60.031 50.000 0.00 0.00 36.43 3.32
277 278 2.227194 ACACTTCAACGGGGATGAAAC 58.773 47.619 0.00 0.00 36.43 2.78
278 279 2.621055 CAACACTTCAACGGGGATGAAA 59.379 45.455 0.00 0.00 36.43 2.69
280 281 1.142060 ACAACACTTCAACGGGGATGA 59.858 47.619 0.00 0.00 0.00 2.92
282 283 1.953686 CAACAACACTTCAACGGGGAT 59.046 47.619 0.00 0.00 0.00 3.85
285 286 2.478879 GGAACAACAACACTTCAACGGG 60.479 50.000 0.00 0.00 0.00 5.28
290 291 2.025793 TGGAGGGAACAACAACACTTCA 60.026 45.455 0.00 0.00 0.00 3.02
291 292 2.650322 TGGAGGGAACAACAACACTTC 58.350 47.619 0.00 0.00 0.00 3.01
293 294 2.375146 GTTGGAGGGAACAACAACACT 58.625 47.619 3.65 0.00 45.62 3.55
300 301 1.746220 CAACGTTGTTGGAGGGAACAA 59.254 47.619 20.21 0.00 42.26 2.83
301 302 1.065345 TCAACGTTGTTGGAGGGAACA 60.065 47.619 26.47 0.93 33.96 3.18
304 305 0.107831 CCTCAACGTTGTTGGAGGGA 59.892 55.000 26.47 5.08 42.55 4.20
309 310 2.036733 TCCTACTCCTCAACGTTGTTGG 59.963 50.000 26.47 26.06 0.00 3.77
311 312 3.576982 TCATCCTACTCCTCAACGTTGTT 59.423 43.478 26.47 10.44 0.00 2.83
314 315 3.162666 TGTCATCCTACTCCTCAACGTT 58.837 45.455 0.00 0.00 0.00 3.99
315 316 2.803956 TGTCATCCTACTCCTCAACGT 58.196 47.619 0.00 0.00 0.00 3.99
317 318 5.091261 ACAATGTCATCCTACTCCTCAAC 57.909 43.478 0.00 0.00 0.00 3.18
326 327 4.405680 CACCTCCTGTACAATGTCATCCTA 59.594 45.833 0.00 0.00 0.00 2.94
328 329 3.535561 CACCTCCTGTACAATGTCATCC 58.464 50.000 0.00 0.00 0.00 3.51
330 331 2.912956 ACCACCTCCTGTACAATGTCAT 59.087 45.455 0.00 0.00 0.00 3.06
331 332 2.334977 ACCACCTCCTGTACAATGTCA 58.665 47.619 0.00 0.00 0.00 3.58
333 334 2.224769 CCAACCACCTCCTGTACAATGT 60.225 50.000 0.00 0.00 0.00 2.71
335 336 1.271926 GCCAACCACCTCCTGTACAAT 60.272 52.381 0.00 0.00 0.00 2.71
340 341 3.953775 CCGCCAACCACCTCCTGT 61.954 66.667 0.00 0.00 0.00 4.00
342 343 1.844289 TAACCGCCAACCACCTCCT 60.844 57.895 0.00 0.00 0.00 3.69
351 352 4.202346 ACCACTAAAGTTAGTAACCGCCAA 60.202 41.667 9.46 0.00 41.82 4.52
352 353 3.324556 ACCACTAAAGTTAGTAACCGCCA 59.675 43.478 9.46 0.00 41.82 5.69
355 356 3.681417 GCCACCACTAAAGTTAGTAACCG 59.319 47.826 9.46 0.00 41.82 4.44
357 358 4.309933 ACGCCACCACTAAAGTTAGTAAC 58.690 43.478 4.78 4.78 41.82 2.50
364 365 0.599204 CACGACGCCACCACTAAAGT 60.599 55.000 0.00 0.00 0.00 2.66
366 367 0.876777 CACACGACGCCACCACTAAA 60.877 55.000 0.00 0.00 0.00 1.85
396 398 1.550130 CCCTTGTTCTAGTCGGGCCA 61.550 60.000 4.39 0.00 0.00 5.36
397 399 1.221021 CCCTTGTTCTAGTCGGGCC 59.779 63.158 0.00 0.00 0.00 5.80
399 401 2.176889 TCTTCCCTTGTTCTAGTCGGG 58.823 52.381 0.00 0.00 36.21 5.14
401 403 4.457834 ACATCTTCCCTTGTTCTAGTCG 57.542 45.455 0.00 0.00 0.00 4.18
414 416 9.429359 CAAATCCTACATCTACATACATCTTCC 57.571 37.037 0.00 0.00 0.00 3.46
424 426 8.429641 GGAAGATTACCAAATCCTACATCTACA 58.570 37.037 0.00 0.00 42.20 2.74
426 428 8.798975 AGGAAGATTACCAAATCCTACATCTA 57.201 34.615 0.00 0.00 42.20 1.98
432 434 6.239600 CCATCGAGGAAGATTACCAAATCCTA 60.240 42.308 0.00 0.00 40.53 2.94
436 438 5.126067 CACCATCGAGGAAGATTACCAAAT 58.874 41.667 0.00 0.00 41.22 2.32
438 440 3.517901 ACACCATCGAGGAAGATTACCAA 59.482 43.478 0.00 0.00 41.22 3.67
443 445 3.981071 TCAACACCATCGAGGAAGATT 57.019 42.857 0.00 0.00 41.22 2.40
444 446 3.198635 ACATCAACACCATCGAGGAAGAT 59.801 43.478 0.00 0.00 41.22 2.40
446 448 2.674852 CACATCAACACCATCGAGGAAG 59.325 50.000 0.00 0.00 41.22 3.46
447 449 2.301583 TCACATCAACACCATCGAGGAA 59.698 45.455 0.00 0.00 41.22 3.36
457 459 5.618561 GGATTCGTAACTTCACATCAACAC 58.381 41.667 0.00 0.00 0.00 3.32
458 460 4.387559 CGGATTCGTAACTTCACATCAACA 59.612 41.667 0.00 0.00 0.00 3.33
464 466 2.559668 ACCTCGGATTCGTAACTTCACA 59.440 45.455 0.00 0.00 37.69 3.58
465 467 3.177487 GACCTCGGATTCGTAACTTCAC 58.823 50.000 0.00 0.00 37.69 3.18
466 468 2.159476 CGACCTCGGATTCGTAACTTCA 60.159 50.000 0.00 0.00 37.69 3.02
501 503 0.962356 GGCATGTCAACTGGGGTCAG 60.962 60.000 0.00 0.00 46.10 3.51
509 511 1.388547 AACGTTGTGGCATGTCAACT 58.611 45.000 0.00 0.34 40.88 3.16
511 513 2.881513 ACATAACGTTGTGGCATGTCAA 59.118 40.909 25.89 0.00 0.00 3.18
512 514 2.225255 CACATAACGTTGTGGCATGTCA 59.775 45.455 25.89 0.00 42.63 3.58
550 553 6.571150 GCTTTGTGAACTAAAAGATCAGGCAT 60.571 38.462 0.00 0.00 35.79 4.40
551 554 5.278463 GCTTTGTGAACTAAAAGATCAGGCA 60.278 40.000 0.00 0.00 35.79 4.75
563 566 0.759959 TGTCGGGGCTTTGTGAACTA 59.240 50.000 0.00 0.00 0.00 2.24
564 567 0.106918 TTGTCGGGGCTTTGTGAACT 60.107 50.000 0.00 0.00 0.00 3.01
578 581 1.586154 GGGAGGCACCATTGTTGTCG 61.586 60.000 2.69 0.00 41.20 4.35
691 694 9.040939 CCTAAAAGAAACAAAAATACACCCAAG 57.959 33.333 0.00 0.00 0.00 3.61
693 696 6.987404 GCCTAAAAGAAACAAAAATACACCCA 59.013 34.615 0.00 0.00 0.00 4.51
695 698 8.141909 AGAGCCTAAAAGAAACAAAAATACACC 58.858 33.333 0.00 0.00 0.00 4.16
696 699 8.968242 CAGAGCCTAAAAGAAACAAAAATACAC 58.032 33.333 0.00 0.00 0.00 2.90
705 714 4.202010 GCACAACAGAGCCTAAAAGAAACA 60.202 41.667 0.00 0.00 0.00 2.83
712 721 2.229792 CCTTGCACAACAGAGCCTAAA 58.770 47.619 0.00 0.00 0.00 1.85
722 731 7.302350 ACTATTTTGAAAAACCTTGCACAAC 57.698 32.000 0.00 0.00 0.00 3.32
724 733 6.876257 ACAACTATTTTGAAAAACCTTGCACA 59.124 30.769 0.00 0.00 0.00 4.57
734 743 9.921637 ACAGAAACAAGACAACTATTTTGAAAA 57.078 25.926 0.00 0.00 0.00 2.29
738 747 8.687824 AACACAGAAACAAGACAACTATTTTG 57.312 30.769 0.00 0.00 0.00 2.44
739 748 9.705290 AAAACACAGAAACAAGACAACTATTTT 57.295 25.926 0.00 0.00 0.00 1.82
771 783 5.363939 TGCATTCGGAACACACATATATGA 58.636 37.500 19.63 0.00 0.00 2.15
775 787 3.243168 GCATGCATTCGGAACACACATAT 60.243 43.478 14.21 0.00 0.00 1.78
811 823 5.627367 CGTCAGCCAAATAAATTTTCGTTCA 59.373 36.000 0.00 0.00 0.00 3.18
817 829 8.825667 AAATACACGTCAGCCAAATAAATTTT 57.174 26.923 0.00 0.00 0.00 1.82
838 851 9.575783 AAAACTGCTAGAAAAACGTTCAAAATA 57.424 25.926 0.00 0.00 0.00 1.40
847 860 9.659830 AATACAACTAAAACTGCTAGAAAAACG 57.340 29.630 0.00 0.00 0.00 3.60
866 879 8.236586 TGTCATGTTGCTATGAAGAAATACAAC 58.763 33.333 0.00 0.00 38.69 3.32
897 923 4.793201 TCGAGACTATCATTCTCCCAGAA 58.207 43.478 0.00 0.00 38.78 3.02
899 925 4.141287 ACTCGAGACTATCATTCTCCCAG 58.859 47.826 21.68 0.00 36.87 4.45
900 926 4.138290 GACTCGAGACTATCATTCTCCCA 58.862 47.826 21.68 0.00 36.87 4.37
901 927 4.394729 AGACTCGAGACTATCATTCTCCC 58.605 47.826 21.68 0.00 36.87 4.30
902 928 5.763204 AGAAGACTCGAGACTATCATTCTCC 59.237 44.000 21.68 0.00 36.87 3.71
905 931 7.971168 TCAAAAGAAGACTCGAGACTATCATTC 59.029 37.037 21.68 12.06 0.00 2.67
908 934 6.655425 TCTCAAAAGAAGACTCGAGACTATCA 59.345 38.462 21.68 2.59 0.00 2.15
915 941 6.076557 GCATTTTCTCAAAAGAAGACTCGAG 58.923 40.000 11.84 11.84 42.36 4.04
921 947 4.338118 ACACGGCATTTTCTCAAAAGAAGA 59.662 37.500 0.00 0.00 42.36 2.87
925 951 3.490526 CCAACACGGCATTTTCTCAAAAG 59.509 43.478 0.00 0.00 33.22 2.27
930 956 1.880027 AGACCAACACGGCATTTTCTC 59.120 47.619 0.00 0.00 39.03 2.87
941 967 3.630312 TGGCAGTTTCTTTAGACCAACAC 59.370 43.478 0.00 0.00 0.00 3.32
943 969 4.911514 TTGGCAGTTTCTTTAGACCAAC 57.088 40.909 0.00 0.00 31.05 3.77
946 972 4.237724 GCAATTGGCAGTTTCTTTAGACC 58.762 43.478 7.72 0.00 43.97 3.85
951 977 3.123050 GTTCGCAATTGGCAGTTTCTTT 58.877 40.909 7.72 0.00 45.17 2.52
1008 1836 0.953960 AGGCGCCTTCAGGTTTTACG 60.954 55.000 27.08 0.00 37.57 3.18
1045 1873 0.036010 AAACACCGCAGAGCATAGCT 60.036 50.000 0.00 0.00 43.88 3.32
1131 1975 3.522731 CTCAGGGAGGCGAGGACG 61.523 72.222 0.00 0.00 42.93 4.79
1618 2477 4.406173 CGACGCACCTGAGCTCGT 62.406 66.667 9.64 1.85 37.92 4.18
1865 2730 2.620367 GGCATACAATCCAAGGGTGTCA 60.620 50.000 0.51 0.00 0.00 3.58
1871 2736 1.949525 CGGAAGGCATACAATCCAAGG 59.050 52.381 0.00 0.00 32.08 3.61
1919 2784 1.748122 CCAGCTGTGGTGATCCTGC 60.748 63.158 13.81 0.00 39.30 4.85
2304 3171 2.968737 AGTGACTCACTCCTGCGAT 58.031 52.632 5.82 0.00 41.21 4.58
2532 3611 7.226720 GCAGAGCCTATTACAAAGTTTATAGCA 59.773 37.037 0.00 0.00 0.00 3.49
2533 3612 7.308049 GGCAGAGCCTATTACAAAGTTTATAGC 60.308 40.741 0.00 0.00 46.69 2.97
2581 3660 1.279271 AGCTAATGTTGCCTCCTTCGT 59.721 47.619 0.00 0.00 0.00 3.85
2608 3687 5.297029 ACAAAGACCTGTAGAGAAACAAAGC 59.703 40.000 0.00 0.00 0.00 3.51
2621 3700 6.223852 CACTGAAGTACATACAAAGACCTGT 58.776 40.000 0.00 0.00 0.00 4.00
2708 3789 0.034756 TCTCGCCAAAGCTGCAACTA 59.965 50.000 1.02 0.00 36.60 2.24
2745 3827 7.112779 CCAAACAAAAGGGAGACTATGACTAT 58.887 38.462 0.00 0.00 0.00 2.12
2769 3851 3.528532 CCACAGATACGAAAACTACCCC 58.471 50.000 0.00 0.00 0.00 4.95
2875 4110 9.391006 GTAACCATGAATCCTATAACAAAGTGA 57.609 33.333 0.00 0.00 0.00 3.41
2884 4119 9.244292 CAGCTACTAGTAACCATGAATCCTATA 57.756 37.037 3.76 0.00 0.00 1.31
2887 4122 5.221541 GCAGCTACTAGTAACCATGAATCCT 60.222 44.000 3.76 0.00 0.00 3.24
2991 4240 6.260700 TCTACAAGGGCATAACATAACCAT 57.739 37.500 0.00 0.00 0.00 3.55
3267 4541 4.768448 TGGAACGTTTCTAGGATGTGTCTA 59.232 41.667 8.32 0.00 0.00 2.59
3342 4618 7.428282 TGCAAAAACGTCTTACATTATGAGA 57.572 32.000 0.00 0.00 0.00 3.27
3347 4623 9.224058 GTTAGTTTGCAAAAACGTCTTACATTA 57.776 29.630 14.67 0.00 37.71 1.90
3389 4665 3.126831 CGAAGGAGGCAACATTAGCTAG 58.873 50.000 0.00 0.00 41.41 3.42
3390 4666 2.500098 ACGAAGGAGGCAACATTAGCTA 59.500 45.455 0.00 0.00 41.41 3.32
3391 4667 1.279271 ACGAAGGAGGCAACATTAGCT 59.721 47.619 0.00 0.00 41.41 3.32
3392 4668 1.739067 ACGAAGGAGGCAACATTAGC 58.261 50.000 0.00 0.00 41.41 3.09
3393 4669 3.195661 GGTACGAAGGAGGCAACATTAG 58.804 50.000 0.00 0.00 41.41 1.73
3394 4670 2.568062 TGGTACGAAGGAGGCAACATTA 59.432 45.455 0.00 0.00 41.41 1.90
3395 4671 1.349688 TGGTACGAAGGAGGCAACATT 59.650 47.619 0.00 0.00 41.41 2.71
3396 4672 0.981183 TGGTACGAAGGAGGCAACAT 59.019 50.000 0.00 0.00 41.41 2.71
3397 4673 0.759959 TTGGTACGAAGGAGGCAACA 59.240 50.000 0.00 0.00 41.41 3.33
3398 4674 1.886886 TTTGGTACGAAGGAGGCAAC 58.113 50.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.