Multiple sequence alignment - TraesCS7D01G321700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G321700 chr7D 100.000 3519 0 0 1 3519 412018850 412015332 0.000000e+00 6499.0
1 TraesCS7D01G321700 chr7D 85.317 1294 160 18 1041 2329 412103908 412102640 0.000000e+00 1310.0
2 TraesCS7D01G321700 chr7D 80.049 406 55 12 2618 3016 412102107 412101721 9.620000e-71 278.0
3 TraesCS7D01G321700 chr7D 77.119 472 105 3 1 470 479663684 479663214 1.610000e-68 270.0
4 TraesCS7D01G321700 chr7D 80.576 139 22 2 2496 2634 412102493 412102360 6.210000e-18 102.0
5 TraesCS7D01G321700 chr7B 97.766 1343 30 0 1006 2348 426369158 426367816 0.000000e+00 2314.0
6 TraesCS7D01G321700 chr7B 94.147 1213 33 10 2342 3519 426367789 426366580 0.000000e+00 1812.0
7 TraesCS7D01G321700 chr7B 85.342 1303 159 21 1033 2329 426527645 426526369 0.000000e+00 1319.0
8 TraesCS7D01G321700 chr7B 79.440 822 145 21 1 807 742650072 742650884 8.530000e-156 560.0
9 TraesCS7D01G321700 chr7B 78.902 820 153 16 1 807 656265247 656264435 4.000000e-149 538.0
10 TraesCS7D01G321700 chr7B 80.000 425 60 14 2618 3035 426525829 426525423 1.240000e-74 291.0
11 TraesCS7D01G321700 chr7B 87.050 139 18 0 2496 2634 426526222 426526084 1.310000e-34 158.0
12 TraesCS7D01G321700 chr7B 96.296 81 3 0 876 956 426370901 426370821 2.200000e-27 134.0
13 TraesCS7D01G321700 chr7B 81.169 154 24 5 657 807 727544111 727544262 6.170000e-23 119.0
14 TraesCS7D01G321700 chr7A 97.001 1334 34 2 1021 2348 473025228 473023895 0.000000e+00 2237.0
15 TraesCS7D01G321700 chr7A 84.444 1350 174 21 990 2329 473238488 473237165 0.000000e+00 1297.0
16 TraesCS7D01G321700 chr7A 91.541 532 34 6 2394 2922 473023718 473023195 0.000000e+00 723.0
17 TraesCS7D01G321700 chr7A 93.451 397 15 1 3134 3519 473023103 473022707 2.360000e-161 579.0
18 TraesCS7D01G321700 chr7A 86.131 137 19 0 2498 2634 473237016 473236880 7.870000e-32 148.0
19 TraesCS7D01G321700 chr7A 100.000 54 0 0 2342 2395 473023875 473023822 2.240000e-17 100.0
20 TraesCS7D01G321700 chr7A 94.915 59 3 0 3075 3133 473023194 473023136 3.740000e-15 93.5
21 TraesCS7D01G321700 chr7A 83.158 95 14 2 2394 2487 473237141 473237048 6.260000e-13 86.1
22 TraesCS7D01G321700 chr5D 79.584 818 145 17 1 807 505906539 505907345 1.830000e-157 566.0
23 TraesCS7D01G321700 chr5D 78.223 799 151 18 1 787 394842239 394843026 1.140000e-134 490.0
24 TraesCS7D01G321700 chr5D 97.917 48 1 0 2342 2389 465001268 465001221 2.250000e-12 84.2
25 TraesCS7D01G321700 chr4B 78.818 812 140 28 3 807 642758299 642757513 5.210000e-143 518.0
26 TraesCS7D01G321700 chr6B 79.183 759 142 13 1 749 37298916 37299668 2.420000e-141 512.0
27 TraesCS7D01G321700 chr6B 85.246 488 71 1 1 487 174576384 174576871 5.240000e-138 501.0
28 TraesCS7D01G321700 chrUn 85.020 494 73 1 4 496 300548671 300548178 5.240000e-138 501.0
29 TraesCS7D01G321700 chr1B 79.155 734 134 16 86 807 61633741 61633015 1.140000e-134 490.0
30 TraesCS7D01G321700 chr1A 77.628 818 162 17 1 807 323183417 323182610 8.840000e-131 477.0
31 TraesCS7D01G321700 chr3B 73.887 831 178 33 1 807 189434245 189435060 2.660000e-76 296.0
32 TraesCS7D01G321700 chr3B 89.247 93 8 2 710 802 747732802 747732892 7.980000e-22 115.0
33 TraesCS7D01G321700 chr3B 100.000 47 0 0 2342 2388 578763060 578763014 1.740000e-13 87.9
34 TraesCS7D01G321700 chr3D 86.408 103 10 3 710 810 548556663 548556563 3.710000e-20 110.0
35 TraesCS7D01G321700 chr3D 97.917 48 1 0 2342 2389 105453123 105453076 2.250000e-12 84.2
36 TraesCS7D01G321700 chr3D 96.078 51 2 0 2342 2392 441253624 441253574 2.250000e-12 84.2
37 TraesCS7D01G321700 chr2A 88.172 93 9 2 710 802 773670981 773671071 3.710000e-20 110.0
38 TraesCS7D01G321700 chr6D 78.161 174 30 7 640 807 278603181 278603352 1.730000e-18 104.0
39 TraesCS7D01G321700 chr6A 97.917 48 1 0 2342 2389 454678012 454677965 2.250000e-12 84.2
40 TraesCS7D01G321700 chr2D 97.917 48 1 0 2342 2389 192181523 192181476 2.250000e-12 84.2
41 TraesCS7D01G321700 chr2D 90.476 63 3 1 2332 2391 472944050 472943988 2.910000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G321700 chr7D 412015332 412018850 3518 True 6499.000000 6499 100.000000 1 3519 1 chr7D.!!$R1 3518
1 TraesCS7D01G321700 chr7D 412101721 412103908 2187 True 563.333333 1310 81.980667 1041 3016 3 chr7D.!!$R3 1975
2 TraesCS7D01G321700 chr7B 426366580 426370901 4321 True 1420.000000 2314 96.069667 876 3519 3 chr7B.!!$R2 2643
3 TraesCS7D01G321700 chr7B 426525423 426527645 2222 True 589.333333 1319 84.130667 1033 3035 3 chr7B.!!$R3 2002
4 TraesCS7D01G321700 chr7B 742650072 742650884 812 False 560.000000 560 79.440000 1 807 1 chr7B.!!$F2 806
5 TraesCS7D01G321700 chr7B 656264435 656265247 812 True 538.000000 538 78.902000 1 807 1 chr7B.!!$R1 806
6 TraesCS7D01G321700 chr7A 473022707 473025228 2521 True 746.500000 2237 95.381600 1021 3519 5 chr7A.!!$R1 2498
7 TraesCS7D01G321700 chr7A 473236880 473238488 1608 True 510.366667 1297 84.577667 990 2634 3 chr7A.!!$R2 1644
8 TraesCS7D01G321700 chr5D 505906539 505907345 806 False 566.000000 566 79.584000 1 807 1 chr5D.!!$F2 806
9 TraesCS7D01G321700 chr5D 394842239 394843026 787 False 490.000000 490 78.223000 1 787 1 chr5D.!!$F1 786
10 TraesCS7D01G321700 chr4B 642757513 642758299 786 True 518.000000 518 78.818000 3 807 1 chr4B.!!$R1 804
11 TraesCS7D01G321700 chr6B 37298916 37299668 752 False 512.000000 512 79.183000 1 749 1 chr6B.!!$F1 748
12 TraesCS7D01G321700 chr1B 61633015 61633741 726 True 490.000000 490 79.155000 86 807 1 chr1B.!!$R1 721
13 TraesCS7D01G321700 chr1A 323182610 323183417 807 True 477.000000 477 77.628000 1 807 1 chr1A.!!$R1 806
14 TraesCS7D01G321700 chr3B 189434245 189435060 815 False 296.000000 296 73.887000 1 807 1 chr3B.!!$F1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 615 0.031515 TCCTCCTCCTAATCCCGCAA 60.032 55.0 0.0 0.0 0.0 4.85 F
652 654 0.033405 TAACTCCCTCCTCACTCCGG 60.033 60.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 3193 0.249073 GGCGATGCAGTAGACGTGAT 60.249 55.0 0.0 0.0 0.0 3.06 R
2620 4510 0.984995 ACCAGGACAAAGTAGCCCTC 59.015 55.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.673484 CCCACCTTTGCTGCCACG 61.673 66.667 0.00 0.00 0.00 4.94
45 46 0.868406 CACGTTCTCTGCAAGTTCCC 59.132 55.000 0.00 0.00 33.76 3.97
71 72 1.665599 CGTTAAACCGTCCGGCAGT 60.666 57.895 5.47 0.00 39.32 4.40
83 84 0.392595 CCGGCAGTCCTTTTACCCTC 60.393 60.000 0.00 0.00 0.00 4.30
116 117 3.614616 GGATCTTGTTCAGCTTGTACTCG 59.385 47.826 0.00 0.00 0.00 4.18
131 132 6.348213 GCTTGTACTCGTTCACATTGGTAAAT 60.348 38.462 0.00 0.00 0.00 1.40
143 144 7.805163 TCACATTGGTAAATCCATCATACTCT 58.195 34.615 0.00 0.00 46.60 3.24
180 181 0.036732 AGAATTGCGGAAGAGCCACA 59.963 50.000 0.00 0.00 35.94 4.17
182 183 0.036732 AATTGCGGAAGAGCCACAGA 59.963 50.000 0.00 0.00 35.94 3.41
205 207 3.071312 CCTCCTCCATGATTCTCTTCCAG 59.929 52.174 0.00 0.00 0.00 3.86
215 217 0.112606 TCTCTTCCAGTCACCGAGGT 59.887 55.000 0.00 0.00 0.00 3.85
237 239 1.069049 GTGGCACTGCACCAAGAAAAT 59.931 47.619 11.13 0.00 39.39 1.82
259 261 3.254657 TGTTCGGGCCTTTAACATTGAAG 59.745 43.478 0.84 0.00 0.00 3.02
310 312 0.528466 TCATCTGCCTTAGAAGCGCG 60.528 55.000 0.00 0.00 39.30 6.86
332 334 3.552068 GGCATGACTAAACGGCTTTGTTT 60.552 43.478 0.00 7.28 43.95 2.83
337 339 5.216648 TGACTAAACGGCTTTGTTTTATGC 58.783 37.500 7.39 0.00 41.92 3.14
396 398 2.273179 CGTCGACCTCCCCAGACAA 61.273 63.158 10.58 0.00 33.56 3.18
418 420 6.013898 ACAAGTCCAGATCATCTTCTTCTTCA 60.014 38.462 0.00 0.00 0.00 3.02
422 424 4.874966 CCAGATCATCTTCTTCTTCACCAC 59.125 45.833 0.00 0.00 0.00 4.16
439 441 2.098233 ACGAAGTTGCATACCCGCG 61.098 57.895 0.00 0.00 37.78 6.46
487 489 4.039603 GCCATAAGCCTCCCAATATTCT 57.960 45.455 0.00 0.00 34.35 2.40
502 504 2.594536 ATTCTTCCTCCCCCAGATCA 57.405 50.000 0.00 0.00 0.00 2.92
503 505 2.594536 TTCTTCCTCCCCCAGATCAT 57.405 50.000 0.00 0.00 0.00 2.45
504 506 2.109229 TCTTCCTCCCCCAGATCATC 57.891 55.000 0.00 0.00 0.00 2.92
505 507 1.294986 TCTTCCTCCCCCAGATCATCA 59.705 52.381 0.00 0.00 0.00 3.07
508 510 1.511299 TCCTCCCCCAGATCATCATCT 59.489 52.381 0.00 0.00 40.32 2.90
510 512 2.305343 CCTCCCCCAGATCATCATCTTC 59.695 54.545 0.00 0.00 37.25 2.87
512 514 2.089753 TCCCCCAGATCATCATCTTCCT 60.090 50.000 0.00 0.00 37.25 3.36
513 515 2.305343 CCCCCAGATCATCATCTTCCTC 59.695 54.545 0.00 0.00 37.25 3.71
516 518 3.390311 CCCAGATCATCATCTTCCTCACA 59.610 47.826 0.00 0.00 37.25 3.58
517 519 4.378774 CCAGATCATCATCTTCCTCACAC 58.621 47.826 0.00 0.00 37.25 3.82
518 520 4.141779 CCAGATCATCATCTTCCTCACACA 60.142 45.833 0.00 0.00 37.25 3.72
519 521 5.425630 CAGATCATCATCTTCCTCACACAA 58.574 41.667 0.00 0.00 37.25 3.33
520 522 5.878669 CAGATCATCATCTTCCTCACACAAA 59.121 40.000 0.00 0.00 37.25 2.83
521 523 5.879223 AGATCATCATCTTCCTCACACAAAC 59.121 40.000 0.00 0.00 35.67 2.93
522 524 4.326826 TCATCATCTTCCTCACACAAACC 58.673 43.478 0.00 0.00 0.00 3.27
523 525 3.855255 TCATCTTCCTCACACAAACCA 57.145 42.857 0.00 0.00 0.00 3.67
524 526 3.476552 TCATCTTCCTCACACAAACCAC 58.523 45.455 0.00 0.00 0.00 4.16
525 527 2.341846 TCTTCCTCACACAAACCACC 57.658 50.000 0.00 0.00 0.00 4.61
526 528 1.562008 TCTTCCTCACACAAACCACCA 59.438 47.619 0.00 0.00 0.00 4.17
527 529 1.949525 CTTCCTCACACAAACCACCAG 59.050 52.381 0.00 0.00 0.00 4.00
528 530 0.916086 TCCTCACACAAACCACCAGT 59.084 50.000 0.00 0.00 0.00 4.00
529 531 2.120312 TCCTCACACAAACCACCAGTA 58.880 47.619 0.00 0.00 0.00 2.74
530 532 2.158871 TCCTCACACAAACCACCAGTAC 60.159 50.000 0.00 0.00 0.00 2.73
531 533 2.218603 CTCACACAAACCACCAGTACC 58.781 52.381 0.00 0.00 0.00 3.34
532 534 1.134037 TCACACAAACCACCAGTACCC 60.134 52.381 0.00 0.00 0.00 3.69
533 535 0.179040 ACACAAACCACCAGTACCCG 60.179 55.000 0.00 0.00 0.00 5.28
534 536 0.179040 CACAAACCACCAGTACCCGT 60.179 55.000 0.00 0.00 0.00 5.28
535 537 0.107268 ACAAACCACCAGTACCCGTC 59.893 55.000 0.00 0.00 0.00 4.79
536 538 0.604511 CAAACCACCAGTACCCGTCC 60.605 60.000 0.00 0.00 0.00 4.79
537 539 1.771783 AAACCACCAGTACCCGTCCC 61.772 60.000 0.00 0.00 0.00 4.46
538 540 2.605295 CCACCAGTACCCGTCCCA 60.605 66.667 0.00 0.00 0.00 4.37
539 541 2.218454 CCACCAGTACCCGTCCCAA 61.218 63.158 0.00 0.00 0.00 4.12
540 542 1.756024 CACCAGTACCCGTCCCAAA 59.244 57.895 0.00 0.00 0.00 3.28
541 543 0.108963 CACCAGTACCCGTCCCAAAA 59.891 55.000 0.00 0.00 0.00 2.44
542 544 0.109153 ACCAGTACCCGTCCCAAAAC 59.891 55.000 0.00 0.00 0.00 2.43
543 545 0.399075 CCAGTACCCGTCCCAAAACT 59.601 55.000 0.00 0.00 0.00 2.66
544 546 1.609841 CCAGTACCCGTCCCAAAACTC 60.610 57.143 0.00 0.00 0.00 3.01
545 547 0.319405 AGTACCCGTCCCAAAACTCG 59.681 55.000 0.00 0.00 0.00 4.18
546 548 1.004679 TACCCGTCCCAAAACTCGC 60.005 57.895 0.00 0.00 0.00 5.03
547 549 2.453379 TACCCGTCCCAAAACTCGCC 62.453 60.000 0.00 0.00 0.00 5.54
548 550 2.032071 CCGTCCCAAAACTCGCCT 59.968 61.111 0.00 0.00 0.00 5.52
549 551 2.033194 CCGTCCCAAAACTCGCCTC 61.033 63.158 0.00 0.00 0.00 4.70
550 552 2.033194 CGTCCCAAAACTCGCCTCC 61.033 63.158 0.00 0.00 0.00 4.30
551 553 2.033194 GTCCCAAAACTCGCCTCCG 61.033 63.158 0.00 0.00 0.00 4.63
552 554 3.431725 CCCAAAACTCGCCTCCGC 61.432 66.667 0.00 0.00 0.00 5.54
553 555 3.431725 CCAAAACTCGCCTCCGCC 61.432 66.667 0.00 0.00 0.00 6.13
554 556 2.358737 CAAAACTCGCCTCCGCCT 60.359 61.111 0.00 0.00 0.00 5.52
555 557 2.047179 AAAACTCGCCTCCGCCTC 60.047 61.111 0.00 0.00 0.00 4.70
556 558 3.934391 AAAACTCGCCTCCGCCTCG 62.934 63.158 0.00 0.00 0.00 4.63
569 571 3.382832 CCTCGCCTCCACCGTTCT 61.383 66.667 0.00 0.00 0.00 3.01
570 572 2.657237 CTCGCCTCCACCGTTCTT 59.343 61.111 0.00 0.00 0.00 2.52
571 573 1.738099 CTCGCCTCCACCGTTCTTG 60.738 63.158 0.00 0.00 0.00 3.02
572 574 2.030562 CGCCTCCACCGTTCTTGT 59.969 61.111 0.00 0.00 0.00 3.16
573 575 2.317609 CGCCTCCACCGTTCTTGTG 61.318 63.158 0.00 0.00 0.00 3.33
579 581 2.203294 ACCGTTCTTGTGGTGCCC 60.203 61.111 0.00 0.00 37.02 5.36
580 582 2.983592 CCGTTCTTGTGGTGCCCC 60.984 66.667 0.00 0.00 0.00 5.80
581 583 2.983592 CGTTCTTGTGGTGCCCCC 60.984 66.667 0.00 0.00 0.00 5.40
582 584 2.983592 GTTCTTGTGGTGCCCCCG 60.984 66.667 0.00 0.00 35.15 5.73
583 585 4.966787 TTCTTGTGGTGCCCCCGC 62.967 66.667 0.00 0.00 44.53 6.13
600 602 3.882825 CCATCGGCATCTCCTCCT 58.117 61.111 0.00 0.00 0.00 3.69
601 603 1.670590 CCATCGGCATCTCCTCCTC 59.329 63.158 0.00 0.00 0.00 3.71
602 604 1.670590 CATCGGCATCTCCTCCTCC 59.329 63.158 0.00 0.00 0.00 4.30
603 605 0.831288 CATCGGCATCTCCTCCTCCT 60.831 60.000 0.00 0.00 0.00 3.69
604 606 0.780637 ATCGGCATCTCCTCCTCCTA 59.219 55.000 0.00 0.00 0.00 2.94
605 607 0.556258 TCGGCATCTCCTCCTCCTAA 59.444 55.000 0.00 0.00 0.00 2.69
606 608 1.148027 TCGGCATCTCCTCCTCCTAAT 59.852 52.381 0.00 0.00 0.00 1.73
607 609 1.548269 CGGCATCTCCTCCTCCTAATC 59.452 57.143 0.00 0.00 0.00 1.75
608 610 1.905894 GGCATCTCCTCCTCCTAATCC 59.094 57.143 0.00 0.00 0.00 3.01
609 611 1.905894 GCATCTCCTCCTCCTAATCCC 59.094 57.143 0.00 0.00 0.00 3.85
610 612 2.175202 CATCTCCTCCTCCTAATCCCG 58.825 57.143 0.00 0.00 0.00 5.14
611 613 0.178958 TCTCCTCCTCCTAATCCCGC 60.179 60.000 0.00 0.00 0.00 6.13
612 614 0.470080 CTCCTCCTCCTAATCCCGCA 60.470 60.000 0.00 0.00 0.00 5.69
613 615 0.031515 TCCTCCTCCTAATCCCGCAA 60.032 55.000 0.00 0.00 0.00 4.85
614 616 0.394565 CCTCCTCCTAATCCCGCAAG 59.605 60.000 0.00 0.00 0.00 4.01
615 617 0.250081 CTCCTCCTAATCCCGCAAGC 60.250 60.000 0.00 0.00 0.00 4.01
616 618 0.980754 TCCTCCTAATCCCGCAAGCA 60.981 55.000 0.00 0.00 0.00 3.91
617 619 0.109342 CCTCCTAATCCCGCAAGCAT 59.891 55.000 0.00 0.00 0.00 3.79
618 620 1.477558 CCTCCTAATCCCGCAAGCATT 60.478 52.381 0.00 0.00 0.00 3.56
631 633 3.160777 CAAGCATTGCATCCTTCTTCC 57.839 47.619 11.91 0.00 40.39 3.46
632 634 1.772836 AGCATTGCATCCTTCTTCCC 58.227 50.000 11.91 0.00 0.00 3.97
633 635 1.287146 AGCATTGCATCCTTCTTCCCT 59.713 47.619 11.91 0.00 0.00 4.20
634 636 2.511218 AGCATTGCATCCTTCTTCCCTA 59.489 45.455 11.91 0.00 0.00 3.53
635 637 3.053395 AGCATTGCATCCTTCTTCCCTAA 60.053 43.478 11.91 0.00 0.00 2.69
636 638 3.067320 GCATTGCATCCTTCTTCCCTAAC 59.933 47.826 3.15 0.00 0.00 2.34
637 639 4.530875 CATTGCATCCTTCTTCCCTAACT 58.469 43.478 0.00 0.00 0.00 2.24
638 640 3.914426 TGCATCCTTCTTCCCTAACTC 57.086 47.619 0.00 0.00 0.00 3.01
639 641 2.505819 TGCATCCTTCTTCCCTAACTCC 59.494 50.000 0.00 0.00 0.00 3.85
640 642 2.158740 GCATCCTTCTTCCCTAACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
641 643 3.388913 CATCCTTCTTCCCTAACTCCCT 58.611 50.000 0.00 0.00 0.00 4.20
642 644 3.117552 TCCTTCTTCCCTAACTCCCTC 57.882 52.381 0.00 0.00 0.00 4.30
643 645 2.120312 CCTTCTTCCCTAACTCCCTCC 58.880 57.143 0.00 0.00 0.00 4.30
644 646 2.293251 CCTTCTTCCCTAACTCCCTCCT 60.293 54.545 0.00 0.00 0.00 3.69
645 647 2.850695 TCTTCCCTAACTCCCTCCTC 57.149 55.000 0.00 0.00 0.00 3.71
646 648 2.008400 TCTTCCCTAACTCCCTCCTCA 58.992 52.381 0.00 0.00 0.00 3.86
647 649 2.112190 CTTCCCTAACTCCCTCCTCAC 58.888 57.143 0.00 0.00 0.00 3.51
648 650 1.394532 TCCCTAACTCCCTCCTCACT 58.605 55.000 0.00 0.00 0.00 3.41
649 651 1.288335 TCCCTAACTCCCTCCTCACTC 59.712 57.143 0.00 0.00 0.00 3.51
650 652 1.689892 CCCTAACTCCCTCCTCACTCC 60.690 61.905 0.00 0.00 0.00 3.85
651 653 1.394618 CTAACTCCCTCCTCACTCCG 58.605 60.000 0.00 0.00 0.00 4.63
652 654 0.033405 TAACTCCCTCCTCACTCCGG 60.033 60.000 0.00 0.00 0.00 5.14
653 655 2.095438 AACTCCCTCCTCACTCCGGT 62.095 60.000 0.00 0.00 0.00 5.28
654 656 1.305381 CTCCCTCCTCACTCCGGTT 60.305 63.158 0.00 0.00 0.00 4.44
655 657 0.905337 CTCCCTCCTCACTCCGGTTT 60.905 60.000 0.00 0.00 0.00 3.27
656 658 0.903454 TCCCTCCTCACTCCGGTTTC 60.903 60.000 0.00 0.00 0.00 2.78
657 659 1.597461 CCTCCTCACTCCGGTTTCC 59.403 63.158 0.00 0.00 0.00 3.13
658 660 0.905337 CCTCCTCACTCCGGTTTCCT 60.905 60.000 0.00 0.00 0.00 3.36
659 661 1.618888 CCTCCTCACTCCGGTTTCCTA 60.619 57.143 0.00 0.00 0.00 2.94
660 662 1.477295 CTCCTCACTCCGGTTTCCTAC 59.523 57.143 0.00 0.00 0.00 3.18
661 663 0.172803 CCTCACTCCGGTTTCCTACG 59.827 60.000 0.00 0.00 0.00 3.51
668 670 1.467920 CCGGTTTCCTACGGTAGACT 58.532 55.000 16.59 0.00 44.85 3.24
669 671 1.403323 CCGGTTTCCTACGGTAGACTC 59.597 57.143 16.59 4.37 44.85 3.36
670 672 1.063174 CGGTTTCCTACGGTAGACTCG 59.937 57.143 16.59 8.69 0.00 4.18
671 673 1.202234 GGTTTCCTACGGTAGACTCGC 60.202 57.143 16.59 3.12 0.00 5.03
672 674 1.098050 TTTCCTACGGTAGACTCGCC 58.902 55.000 16.59 0.00 0.00 5.54
673 675 0.035152 TTCCTACGGTAGACTCGCCA 60.035 55.000 16.59 0.00 0.00 5.69
674 676 0.182061 TCCTACGGTAGACTCGCCAT 59.818 55.000 16.59 0.00 0.00 4.40
675 677 0.311165 CCTACGGTAGACTCGCCATG 59.689 60.000 16.59 0.00 0.00 3.66
676 678 1.022735 CTACGGTAGACTCGCCATGT 58.977 55.000 9.60 0.00 0.00 3.21
677 679 0.736636 TACGGTAGACTCGCCATGTG 59.263 55.000 0.00 0.00 0.00 3.21
678 680 1.226974 CGGTAGACTCGCCATGTGG 60.227 63.158 0.00 0.00 38.53 4.17
679 681 1.663379 CGGTAGACTCGCCATGTGGA 61.663 60.000 2.55 0.00 37.39 4.02
680 682 0.753262 GGTAGACTCGCCATGTGGAT 59.247 55.000 2.55 0.00 37.39 3.41
681 683 1.269831 GGTAGACTCGCCATGTGGATC 60.270 57.143 2.55 0.00 37.39 3.36
682 684 1.409064 GTAGACTCGCCATGTGGATCA 59.591 52.381 2.55 0.00 37.39 2.92
683 685 0.176680 AGACTCGCCATGTGGATCAC 59.823 55.000 2.55 0.00 37.39 3.06
684 686 1.148157 GACTCGCCATGTGGATCACG 61.148 60.000 2.55 0.00 37.14 4.35
685 687 1.884464 CTCGCCATGTGGATCACGG 60.884 63.158 2.55 0.00 37.14 4.94
686 688 2.125147 CGCCATGTGGATCACGGT 60.125 61.111 2.55 0.00 37.14 4.83
687 689 2.173669 CGCCATGTGGATCACGGTC 61.174 63.158 2.55 0.00 37.14 4.79
688 690 1.819632 GCCATGTGGATCACGGTCC 60.820 63.158 2.55 0.00 37.14 4.46
689 691 1.521457 CCATGTGGATCACGGTCCG 60.521 63.158 10.48 10.48 41.35 4.79
690 692 1.515487 CATGTGGATCACGGTCCGA 59.485 57.895 20.51 0.00 41.35 4.55
691 693 0.104855 CATGTGGATCACGGTCCGAT 59.895 55.000 20.51 0.73 41.35 4.18
692 694 1.339929 CATGTGGATCACGGTCCGATA 59.660 52.381 20.51 5.44 41.35 2.92
693 695 1.029681 TGTGGATCACGGTCCGATAG 58.970 55.000 20.51 7.54 41.35 2.08
694 696 0.318784 GTGGATCACGGTCCGATAGC 60.319 60.000 20.51 7.82 41.35 2.97
707 709 1.849097 CGATAGCGGGACAAGGTTAC 58.151 55.000 0.00 0.00 0.00 2.50
708 710 1.849097 GATAGCGGGACAAGGTTACG 58.151 55.000 0.00 0.00 0.00 3.18
710 712 2.047560 GCGGGACAAGGTTACGCT 60.048 61.111 0.00 0.00 46.02 5.07
711 713 2.098831 GCGGGACAAGGTTACGCTC 61.099 63.158 0.00 0.00 46.02 5.03
712 714 1.447314 CGGGACAAGGTTACGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
713 715 1.078637 GGGACAAGGTTACGCTCCC 60.079 63.158 0.00 0.00 33.97 4.30
714 716 1.447314 GGACAAGGTTACGCTCCCG 60.447 63.158 0.00 0.00 41.14 5.14
715 717 1.447314 GACAAGGTTACGCTCCCGG 60.447 63.158 0.00 0.00 39.22 5.73
716 718 2.818274 CAAGGTTACGCTCCCGGC 60.818 66.667 0.00 0.00 39.22 6.13
717 719 4.091939 AAGGTTACGCTCCCGGCC 62.092 66.667 0.00 0.00 39.22 6.13
739 741 2.897350 GAGGAAATCCAGCCGCCG 60.897 66.667 1.67 0.00 38.89 6.46
740 742 3.682292 GAGGAAATCCAGCCGCCGT 62.682 63.158 1.67 0.00 38.89 5.68
741 743 3.508840 GGAAATCCAGCCGCCGTG 61.509 66.667 0.00 0.00 35.64 4.94
742 744 2.435938 GAAATCCAGCCGCCGTGA 60.436 61.111 0.00 0.00 0.00 4.35
743 745 2.033448 AAATCCAGCCGCCGTGAA 59.967 55.556 0.00 0.00 0.00 3.18
744 746 1.982073 GAAATCCAGCCGCCGTGAAG 61.982 60.000 0.00 0.00 0.00 3.02
745 747 3.976701 AATCCAGCCGCCGTGAAGG 62.977 63.158 0.00 0.00 44.97 3.46
748 750 2.978010 CAGCCGCCGTGAAGGTTT 60.978 61.111 0.00 0.00 43.70 3.27
749 751 2.203294 AGCCGCCGTGAAGGTTTT 60.203 55.556 0.00 0.00 43.70 2.43
750 752 1.071814 AGCCGCCGTGAAGGTTTTA 59.928 52.632 0.00 0.00 43.70 1.52
751 753 1.208358 GCCGCCGTGAAGGTTTTAC 59.792 57.895 0.00 0.00 43.70 2.01
752 754 1.494189 CCGCCGTGAAGGTTTTACG 59.506 57.895 0.00 0.00 43.70 3.18
753 755 1.223417 CCGCCGTGAAGGTTTTACGT 61.223 55.000 0.00 0.00 43.70 3.57
754 756 0.111001 CGCCGTGAAGGTTTTACGTG 60.111 55.000 0.00 0.00 43.70 4.49
755 757 0.236449 GCCGTGAAGGTTTTACGTGG 59.764 55.000 0.00 0.00 43.70 4.94
756 758 1.868469 CCGTGAAGGTTTTACGTGGA 58.132 50.000 0.00 0.00 36.17 4.02
757 759 1.528161 CCGTGAAGGTTTTACGTGGAC 59.472 52.381 0.00 0.00 36.17 4.02
758 760 2.476821 CGTGAAGGTTTTACGTGGACT 58.523 47.619 0.00 0.00 33.48 3.85
759 761 2.473984 CGTGAAGGTTTTACGTGGACTC 59.526 50.000 0.00 0.00 33.48 3.36
760 762 2.804527 GTGAAGGTTTTACGTGGACTCC 59.195 50.000 0.00 0.00 0.00 3.85
761 763 2.064014 GAAGGTTTTACGTGGACTCCG 58.936 52.381 0.00 0.00 0.00 4.63
762 764 1.331214 AGGTTTTACGTGGACTCCGA 58.669 50.000 0.00 0.00 0.00 4.55
763 765 1.271656 AGGTTTTACGTGGACTCCGAG 59.728 52.381 0.00 0.00 0.00 4.63
764 766 1.066136 GTTTTACGTGGACTCCGAGC 58.934 55.000 0.00 0.00 0.00 5.03
765 767 0.387622 TTTTACGTGGACTCCGAGCG 60.388 55.000 0.00 5.34 0.00 5.03
766 768 1.518056 TTTACGTGGACTCCGAGCGT 61.518 55.000 13.99 13.99 39.23 5.07
767 769 1.915614 TTACGTGGACTCCGAGCGTC 61.916 60.000 13.21 0.00 37.05 5.19
768 770 4.813526 CGTGGACTCCGAGCGTCG 62.814 72.222 0.00 0.00 40.07 5.12
801 803 2.517609 GTGGAACCCTAGATCGCCT 58.482 57.895 0.00 0.00 0.00 5.52
802 804 1.700955 GTGGAACCCTAGATCGCCTA 58.299 55.000 0.00 0.00 0.00 3.93
803 805 1.614413 GTGGAACCCTAGATCGCCTAG 59.386 57.143 0.00 5.13 43.56 3.02
813 815 2.120940 TCGCCTAGGGGGACACAA 59.879 61.111 24.48 2.20 39.75 3.33
814 816 1.987855 TCGCCTAGGGGGACACAAG 60.988 63.158 24.48 0.00 39.75 3.16
815 817 1.987855 CGCCTAGGGGGACACAAGA 60.988 63.158 18.03 0.00 37.91 3.02
816 818 1.908483 GCCTAGGGGGACACAAGAG 59.092 63.158 11.72 0.00 37.23 2.85
817 819 1.908483 CCTAGGGGGACACAAGAGC 59.092 63.158 0.00 0.00 37.23 4.09
818 820 1.627297 CCTAGGGGGACACAAGAGCC 61.627 65.000 0.00 0.00 37.23 4.70
819 821 1.961180 CTAGGGGGACACAAGAGCCG 61.961 65.000 0.00 0.00 0.00 5.52
820 822 2.449967 TAGGGGGACACAAGAGCCGA 62.450 60.000 0.00 0.00 0.00 5.54
821 823 2.266055 GGGGACACAAGAGCCGAG 59.734 66.667 0.00 0.00 0.00 4.63
822 824 2.266055 GGGACACAAGAGCCGAGG 59.734 66.667 0.00 0.00 0.00 4.63
823 825 2.283529 GGGACACAAGAGCCGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
824 826 1.617947 GGGACACAAGAGCCGAGGAT 61.618 60.000 0.00 0.00 0.00 3.24
825 827 1.112113 GGACACAAGAGCCGAGGATA 58.888 55.000 0.00 0.00 0.00 2.59
826 828 1.067821 GGACACAAGAGCCGAGGATAG 59.932 57.143 0.00 0.00 0.00 2.08
827 829 2.025155 GACACAAGAGCCGAGGATAGA 58.975 52.381 0.00 0.00 0.00 1.98
828 830 2.625790 GACACAAGAGCCGAGGATAGAT 59.374 50.000 0.00 0.00 0.00 1.98
829 831 3.034635 ACACAAGAGCCGAGGATAGATT 58.965 45.455 0.00 0.00 0.00 2.40
830 832 3.452627 ACACAAGAGCCGAGGATAGATTT 59.547 43.478 0.00 0.00 0.00 2.17
831 833 4.080863 ACACAAGAGCCGAGGATAGATTTT 60.081 41.667 0.00 0.00 0.00 1.82
832 834 4.878397 CACAAGAGCCGAGGATAGATTTTT 59.122 41.667 0.00 0.00 0.00 1.94
855 857 4.553330 TTTTTGAGAACTAGCCGAGGAT 57.447 40.909 0.00 0.00 0.00 3.24
856 858 5.670792 TTTTTGAGAACTAGCCGAGGATA 57.329 39.130 0.00 0.00 0.00 2.59
857 859 4.920640 TTTGAGAACTAGCCGAGGATAG 57.079 45.455 12.39 12.39 39.71 2.08
858 860 3.859061 TGAGAACTAGCCGAGGATAGA 57.141 47.619 19.88 0.00 37.52 1.98
859 861 4.374689 TGAGAACTAGCCGAGGATAGAT 57.625 45.455 19.88 9.06 37.52 1.98
860 862 4.730966 TGAGAACTAGCCGAGGATAGATT 58.269 43.478 19.88 10.66 37.52 2.40
861 863 5.141182 TGAGAACTAGCCGAGGATAGATTT 58.859 41.667 19.88 4.56 37.52 2.17
862 864 5.010112 TGAGAACTAGCCGAGGATAGATTTG 59.990 44.000 19.88 0.00 37.52 2.32
863 865 5.141182 AGAACTAGCCGAGGATAGATTTGA 58.859 41.667 19.88 0.00 37.52 2.69
864 866 5.777732 AGAACTAGCCGAGGATAGATTTGAT 59.222 40.000 19.88 0.00 37.52 2.57
865 867 6.948886 AGAACTAGCCGAGGATAGATTTGATA 59.051 38.462 19.88 0.00 37.52 2.15
866 868 6.767524 ACTAGCCGAGGATAGATTTGATAG 57.232 41.667 19.88 0.00 37.52 2.08
867 869 6.249951 ACTAGCCGAGGATAGATTTGATAGT 58.750 40.000 19.88 0.00 37.52 2.12
868 870 5.652994 AGCCGAGGATAGATTTGATAGTC 57.347 43.478 0.00 0.00 0.00 2.59
869 871 5.329399 AGCCGAGGATAGATTTGATAGTCT 58.671 41.667 0.00 0.00 0.00 3.24
870 872 5.417580 AGCCGAGGATAGATTTGATAGTCTC 59.582 44.000 0.00 0.00 0.00 3.36
871 873 5.184096 GCCGAGGATAGATTTGATAGTCTCA 59.816 44.000 0.00 0.00 0.00 3.27
872 874 6.624861 GCCGAGGATAGATTTGATAGTCTCAG 60.625 46.154 0.00 0.00 34.68 3.35
873 875 6.321717 CGAGGATAGATTTGATAGTCTCAGC 58.678 44.000 0.00 0.00 34.68 4.26
874 876 6.603940 AGGATAGATTTGATAGTCTCAGCC 57.396 41.667 0.00 0.00 34.68 4.85
920 922 5.611374 GCTATTTGTGTCTATTAGGCCTCA 58.389 41.667 9.68 0.00 0.00 3.86
956 958 4.583489 CCGAGTTGGCCTAATACTAGAAGA 59.417 45.833 3.32 0.00 0.00 2.87
957 959 5.068723 CCGAGTTGGCCTAATACTAGAAGAA 59.931 44.000 3.32 0.00 0.00 2.52
959 961 6.039493 CGAGTTGGCCTAATACTAGAAGAAGA 59.961 42.308 3.32 0.00 0.00 2.87
961 963 5.769484 TGGCCTAATACTAGAAGAAGACG 57.231 43.478 3.32 0.00 0.00 4.18
962 964 4.037684 TGGCCTAATACTAGAAGAAGACGC 59.962 45.833 3.32 0.00 0.00 5.19
963 965 4.278919 GGCCTAATACTAGAAGAAGACGCT 59.721 45.833 0.00 0.00 0.00 5.07
964 966 5.216648 GCCTAATACTAGAAGAAGACGCTG 58.783 45.833 0.00 0.00 0.00 5.18
965 967 5.216648 CCTAATACTAGAAGAAGACGCTGC 58.783 45.833 0.00 0.00 0.00 5.25
966 968 4.993029 AATACTAGAAGAAGACGCTGCT 57.007 40.909 0.00 0.00 0.00 4.24
967 969 2.931512 ACTAGAAGAAGACGCTGCTC 57.068 50.000 0.00 0.00 0.00 4.26
968 970 1.474879 ACTAGAAGAAGACGCTGCTCC 59.525 52.381 0.00 0.00 0.00 4.70
970 972 1.840737 AGAAGAAGACGCTGCTCCTA 58.159 50.000 0.00 0.00 0.00 2.94
971 973 1.474879 AGAAGAAGACGCTGCTCCTAC 59.525 52.381 0.00 0.00 0.00 3.18
977 2528 2.417719 AGACGCTGCTCCTACAAAAAG 58.582 47.619 0.00 0.00 0.00 2.27
979 2530 2.806244 GACGCTGCTCCTACAAAAAGAA 59.194 45.455 0.00 0.00 0.00 2.52
980 2531 3.211045 ACGCTGCTCCTACAAAAAGAAA 58.789 40.909 0.00 0.00 0.00 2.52
981 2532 3.630312 ACGCTGCTCCTACAAAAAGAAAA 59.370 39.130 0.00 0.00 0.00 2.29
985 2536 6.273071 GCTGCTCCTACAAAAAGAAAAAGAA 58.727 36.000 0.00 0.00 0.00 2.52
986 2537 6.756542 GCTGCTCCTACAAAAAGAAAAAGAAA 59.243 34.615 0.00 0.00 0.00 2.52
988 2539 9.150348 CTGCTCCTACAAAAAGAAAAAGAAAAA 57.850 29.630 0.00 0.00 0.00 1.94
1008 2623 1.536943 AAGACGCCTCCACCTGAGAC 61.537 60.000 0.00 0.00 44.42 3.36
1510 3228 0.176219 CGCCGGGTTATACTTCCACA 59.824 55.000 2.18 0.00 0.00 4.17
1543 3261 0.737715 CTACCGAGTTCTGTGCTGCC 60.738 60.000 0.00 0.00 0.00 4.85
1624 3342 3.391665 GACCTCAGGTGCATCGGGG 62.392 68.421 0.00 6.22 35.25 5.73
1749 3467 1.178534 TTAAGTTGCCTGGTGCTGGC 61.179 55.000 0.00 0.00 46.46 4.85
1920 3638 4.823364 TCTCTGGGTTCTAGAGGATCAT 57.177 45.455 8.13 0.00 41.54 2.45
1958 3676 1.464997 GTTGAAGCACCGGATCAAGTC 59.535 52.381 9.46 0.00 34.02 3.01
2078 3796 1.084289 GTTTCTGGTGCCGATGGTAC 58.916 55.000 0.00 0.00 37.58 3.34
2150 3868 4.372656 AGGTTCAGAGAAAGTCTTGTTCG 58.627 43.478 0.00 0.00 30.64 3.95
2669 4835 5.539193 GGTCACTAGTACCTGCCTTATGTAT 59.461 44.000 11.92 0.00 33.97 2.29
2694 4860 3.076104 CAGCATGTCTGTAGCCTGG 57.924 57.895 8.46 0.00 38.02 4.45
2718 4885 8.359642 TGGTTAATCAACAAAGAGGAAATTCTG 58.640 33.333 0.00 0.00 36.29 3.02
2768 4935 9.787435 AACAGAAGTGGTTATGTTATGTCTTTA 57.213 29.630 0.00 0.00 44.42 1.85
2945 5114 2.034685 TGGTAGCACTAAGATAGCAGCG 59.965 50.000 0.00 0.00 41.22 5.18
3141 5333 2.180017 CCGCCATGCTTTGAGTGC 59.820 61.111 0.00 0.00 0.00 4.40
3233 5445 4.641541 TCCTGATGCAAAACCATCTGTATG 59.358 41.667 0.00 0.00 41.65 2.39
3326 5538 8.491045 AGGATTTATTTTCTTTCCAGAAACCA 57.509 30.769 0.00 0.00 46.71 3.67
3342 5554 6.763610 CCAGAAACCAGATATTACTTCACCTC 59.236 42.308 0.00 0.00 0.00 3.85
3510 5722 3.806521 CCTCAAAGCTATGTTCTCCGATG 59.193 47.826 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.521708 GTGGCAGCAAAGGTGGGT 60.522 61.111 0.00 0.00 0.00 4.51
29 30 2.849294 AGAGGGAACTTGCAGAGAAC 57.151 50.000 3.37 0.00 44.43 3.01
45 46 0.712222 GACGGTTTAACGGCGAAGAG 59.288 55.000 16.62 0.12 38.39 2.85
71 72 1.882308 TATGGGCGAGGGTAAAAGGA 58.118 50.000 0.00 0.00 0.00 3.36
106 107 2.806244 ACCAATGTGAACGAGTACAAGC 59.194 45.455 0.00 0.00 0.00 4.01
143 144 1.137282 TCTGCGCCGGTTATCATACAA 59.863 47.619 4.18 0.00 0.00 2.41
173 174 0.980231 ATGGAGGAGGTCTGTGGCTC 60.980 60.000 0.00 0.00 0.00 4.70
180 181 3.704545 AGAGAATCATGGAGGAGGTCT 57.295 47.619 0.00 0.00 37.82 3.85
182 183 3.044894 GGAAGAGAATCATGGAGGAGGT 58.955 50.000 0.00 0.00 37.82 3.85
205 207 1.080025 GTGCCACTACCTCGGTGAC 60.080 63.158 0.00 0.00 36.89 3.67
215 217 0.472044 TTCTTGGTGCAGTGCCACTA 59.528 50.000 13.72 6.17 35.46 2.74
237 239 2.865079 TCAATGTTAAAGGCCCGAACA 58.135 42.857 14.96 14.96 37.47 3.18
310 312 1.539827 ACAAAGCCGTTTAGTCATGCC 59.460 47.619 0.00 0.00 0.00 4.40
332 334 1.223487 GGCTCTTCCGGGTGCATAA 59.777 57.895 0.00 0.00 0.00 1.90
337 339 3.095347 GCTAGGGCTCTTCCGGGTG 62.095 68.421 0.00 0.00 34.94 4.61
396 398 5.104982 GGTGAAGAAGAAGATGATCTGGACT 60.105 44.000 0.00 0.00 0.00 3.85
418 420 0.672401 CGGGTATGCAACTTCGTGGT 60.672 55.000 0.00 0.00 0.00 4.16
422 424 1.355796 TTCGCGGGTATGCAACTTCG 61.356 55.000 6.13 0.00 34.15 3.79
427 429 0.678366 ACCAATTCGCGGGTATGCAA 60.678 50.000 6.13 0.00 35.09 4.08
439 441 1.811941 GCGGATCTGGAGGACCAATTC 60.812 57.143 3.14 0.00 46.32 2.17
483 485 2.594536 TGATCTGGGGGAGGAAGAAT 57.405 50.000 0.00 0.00 0.00 2.40
487 489 2.089753 AGATGATGATCTGGGGGAGGAA 60.090 50.000 0.00 0.00 37.56 3.36
502 504 4.074970 GTGGTTTGTGTGAGGAAGATGAT 58.925 43.478 0.00 0.00 0.00 2.45
503 505 3.476552 GTGGTTTGTGTGAGGAAGATGA 58.523 45.455 0.00 0.00 0.00 2.92
504 506 2.554032 GGTGGTTTGTGTGAGGAAGATG 59.446 50.000 0.00 0.00 0.00 2.90
505 507 2.174639 TGGTGGTTTGTGTGAGGAAGAT 59.825 45.455 0.00 0.00 0.00 2.40
508 510 1.283613 ACTGGTGGTTTGTGTGAGGAA 59.716 47.619 0.00 0.00 0.00 3.36
510 512 2.218603 GTACTGGTGGTTTGTGTGAGG 58.781 52.381 0.00 0.00 0.00 3.86
512 514 1.134037 GGGTACTGGTGGTTTGTGTGA 60.134 52.381 0.00 0.00 0.00 3.58
513 515 1.314730 GGGTACTGGTGGTTTGTGTG 58.685 55.000 0.00 0.00 0.00 3.82
516 518 0.107268 GACGGGTACTGGTGGTTTGT 59.893 55.000 0.00 0.00 40.47 2.83
517 519 0.604511 GGACGGGTACTGGTGGTTTG 60.605 60.000 0.00 0.00 40.47 2.93
518 520 1.756665 GGACGGGTACTGGTGGTTT 59.243 57.895 0.00 0.00 40.47 3.27
519 521 2.219164 GGGACGGGTACTGGTGGTT 61.219 63.158 0.00 0.00 40.47 3.67
520 522 2.605601 GGGACGGGTACTGGTGGT 60.606 66.667 0.00 0.00 40.47 4.16
521 523 1.770749 TTTGGGACGGGTACTGGTGG 61.771 60.000 0.00 0.00 40.47 4.61
522 524 0.108963 TTTTGGGACGGGTACTGGTG 59.891 55.000 0.00 0.00 40.47 4.17
523 525 0.109153 GTTTTGGGACGGGTACTGGT 59.891 55.000 0.00 0.00 40.47 4.00
524 526 0.399075 AGTTTTGGGACGGGTACTGG 59.601 55.000 0.00 0.00 40.47 4.00
525 527 1.804601 GAGTTTTGGGACGGGTACTG 58.195 55.000 0.00 0.00 42.99 2.74
526 528 0.319405 CGAGTTTTGGGACGGGTACT 59.681 55.000 0.00 0.00 0.00 2.73
527 529 1.293963 GCGAGTTTTGGGACGGGTAC 61.294 60.000 0.00 0.00 0.00 3.34
528 530 1.004679 GCGAGTTTTGGGACGGGTA 60.005 57.895 0.00 0.00 0.00 3.69
529 531 2.281276 GCGAGTTTTGGGACGGGT 60.281 61.111 0.00 0.00 0.00 5.28
530 532 3.053896 GGCGAGTTTTGGGACGGG 61.054 66.667 0.00 0.00 0.00 5.28
531 533 2.032071 AGGCGAGTTTTGGGACGG 59.968 61.111 0.00 0.00 0.00 4.79
532 534 2.033194 GGAGGCGAGTTTTGGGACG 61.033 63.158 0.00 0.00 0.00 4.79
533 535 2.033194 CGGAGGCGAGTTTTGGGAC 61.033 63.158 0.00 0.00 0.00 4.46
534 536 2.345991 CGGAGGCGAGTTTTGGGA 59.654 61.111 0.00 0.00 0.00 4.37
535 537 3.431725 GCGGAGGCGAGTTTTGGG 61.432 66.667 0.00 0.00 0.00 4.12
552 554 2.943978 AAGAACGGTGGAGGCGAGG 61.944 63.158 0.00 0.00 0.00 4.63
553 555 1.738099 CAAGAACGGTGGAGGCGAG 60.738 63.158 0.00 0.00 0.00 5.03
554 556 2.342279 CAAGAACGGTGGAGGCGA 59.658 61.111 0.00 0.00 0.00 5.54
555 557 2.030562 ACAAGAACGGTGGAGGCG 59.969 61.111 0.00 0.00 0.00 5.52
556 558 3.655481 CACAAGAACGGTGGAGGC 58.345 61.111 0.00 0.00 32.65 4.70
583 585 1.670590 GAGGAGGAGATGCCGATGG 59.329 63.158 0.00 0.00 43.43 3.51
584 586 0.831288 AGGAGGAGGAGATGCCGATG 60.831 60.000 0.00 0.00 43.43 3.84
585 587 0.780637 TAGGAGGAGGAGATGCCGAT 59.219 55.000 0.00 0.00 43.43 4.18
586 588 0.556258 TTAGGAGGAGGAGATGCCGA 59.444 55.000 0.00 0.00 43.43 5.54
587 589 1.548269 GATTAGGAGGAGGAGATGCCG 59.452 57.143 0.00 0.00 43.43 5.69
588 590 1.905894 GGATTAGGAGGAGGAGATGCC 59.094 57.143 0.00 0.00 0.00 4.40
589 591 1.905894 GGGATTAGGAGGAGGAGATGC 59.094 57.143 0.00 0.00 0.00 3.91
590 592 2.175202 CGGGATTAGGAGGAGGAGATG 58.825 57.143 0.00 0.00 0.00 2.90
591 593 1.551329 GCGGGATTAGGAGGAGGAGAT 60.551 57.143 0.00 0.00 0.00 2.75
592 594 0.178958 GCGGGATTAGGAGGAGGAGA 60.179 60.000 0.00 0.00 0.00 3.71
593 595 0.470080 TGCGGGATTAGGAGGAGGAG 60.470 60.000 0.00 0.00 0.00 3.69
594 596 0.031515 TTGCGGGATTAGGAGGAGGA 60.032 55.000 0.00 0.00 0.00 3.71
595 597 0.394565 CTTGCGGGATTAGGAGGAGG 59.605 60.000 0.00 0.00 0.00 4.30
596 598 0.250081 GCTTGCGGGATTAGGAGGAG 60.250 60.000 0.00 0.00 0.00 3.69
597 599 0.980754 TGCTTGCGGGATTAGGAGGA 60.981 55.000 0.00 0.00 0.00 3.71
598 600 0.109342 ATGCTTGCGGGATTAGGAGG 59.891 55.000 0.00 0.00 0.00 4.30
599 601 1.605710 CAATGCTTGCGGGATTAGGAG 59.394 52.381 0.00 0.00 34.21 3.69
600 602 1.679139 CAATGCTTGCGGGATTAGGA 58.321 50.000 0.00 0.00 34.21 2.94
614 616 1.772836 AGGGAAGAAGGATGCAATGC 58.227 50.000 0.00 0.00 33.28 3.56
615 617 4.530875 AGTTAGGGAAGAAGGATGCAATG 58.469 43.478 0.00 0.00 0.00 2.82
616 618 4.385754 GGAGTTAGGGAAGAAGGATGCAAT 60.386 45.833 0.00 0.00 0.00 3.56
617 619 3.054361 GGAGTTAGGGAAGAAGGATGCAA 60.054 47.826 0.00 0.00 0.00 4.08
618 620 2.505819 GGAGTTAGGGAAGAAGGATGCA 59.494 50.000 0.00 0.00 0.00 3.96
619 621 2.158740 GGGAGTTAGGGAAGAAGGATGC 60.159 54.545 0.00 0.00 0.00 3.91
620 622 3.388913 AGGGAGTTAGGGAAGAAGGATG 58.611 50.000 0.00 0.00 0.00 3.51
621 623 3.633952 GGAGGGAGTTAGGGAAGAAGGAT 60.634 52.174 0.00 0.00 0.00 3.24
622 624 2.292984 GGAGGGAGTTAGGGAAGAAGGA 60.293 54.545 0.00 0.00 0.00 3.36
623 625 2.120312 GGAGGGAGTTAGGGAAGAAGG 58.880 57.143 0.00 0.00 0.00 3.46
624 626 3.035363 GAGGAGGGAGTTAGGGAAGAAG 58.965 54.545 0.00 0.00 0.00 2.85
625 627 2.385765 TGAGGAGGGAGTTAGGGAAGAA 59.614 50.000 0.00 0.00 0.00 2.52
626 628 2.008400 TGAGGAGGGAGTTAGGGAAGA 58.992 52.381 0.00 0.00 0.00 2.87
627 629 2.112190 GTGAGGAGGGAGTTAGGGAAG 58.888 57.143 0.00 0.00 0.00 3.46
628 630 1.722851 AGTGAGGAGGGAGTTAGGGAA 59.277 52.381 0.00 0.00 0.00 3.97
629 631 1.288335 GAGTGAGGAGGGAGTTAGGGA 59.712 57.143 0.00 0.00 0.00 4.20
630 632 1.689892 GGAGTGAGGAGGGAGTTAGGG 60.690 61.905 0.00 0.00 0.00 3.53
631 633 1.783071 GGAGTGAGGAGGGAGTTAGG 58.217 60.000 0.00 0.00 0.00 2.69
632 634 1.394618 CGGAGTGAGGAGGGAGTTAG 58.605 60.000 0.00 0.00 0.00 2.34
633 635 0.033405 CCGGAGTGAGGAGGGAGTTA 60.033 60.000 0.00 0.00 0.00 2.24
634 636 1.305381 CCGGAGTGAGGAGGGAGTT 60.305 63.158 0.00 0.00 0.00 3.01
635 637 2.095438 AACCGGAGTGAGGAGGGAGT 62.095 60.000 9.46 0.00 0.00 3.85
636 638 0.905337 AAACCGGAGTGAGGAGGGAG 60.905 60.000 9.46 0.00 0.00 4.30
637 639 0.903454 GAAACCGGAGTGAGGAGGGA 60.903 60.000 9.46 0.00 0.00 4.20
638 640 1.597461 GAAACCGGAGTGAGGAGGG 59.403 63.158 9.46 0.00 0.00 4.30
639 641 0.905337 AGGAAACCGGAGTGAGGAGG 60.905 60.000 9.46 0.00 0.00 4.30
640 642 1.477295 GTAGGAAACCGGAGTGAGGAG 59.523 57.143 9.46 0.00 0.00 3.69
641 643 1.553706 GTAGGAAACCGGAGTGAGGA 58.446 55.000 9.46 0.00 0.00 3.71
642 644 0.172803 CGTAGGAAACCGGAGTGAGG 59.827 60.000 9.46 0.00 0.00 3.86
643 645 3.715854 CGTAGGAAACCGGAGTGAG 57.284 57.895 9.46 0.00 0.00 3.51
657 659 1.022735 ACATGGCGAGTCTACCGTAG 58.977 55.000 0.00 0.00 0.00 3.51
658 660 0.736636 CACATGGCGAGTCTACCGTA 59.263 55.000 0.00 0.00 0.00 4.02
659 661 1.511305 CACATGGCGAGTCTACCGT 59.489 57.895 0.00 0.00 0.00 4.83
660 662 1.226974 CCACATGGCGAGTCTACCG 60.227 63.158 0.00 0.00 0.00 4.02
661 663 0.753262 ATCCACATGGCGAGTCTACC 59.247 55.000 0.00 0.00 34.44 3.18
662 664 1.409064 TGATCCACATGGCGAGTCTAC 59.591 52.381 0.00 0.00 34.44 2.59
663 665 1.409064 GTGATCCACATGGCGAGTCTA 59.591 52.381 0.00 0.00 34.08 2.59
664 666 0.176680 GTGATCCACATGGCGAGTCT 59.823 55.000 0.00 0.00 34.08 3.24
665 667 1.148157 CGTGATCCACATGGCGAGTC 61.148 60.000 0.00 0.00 33.40 3.36
666 668 1.153568 CGTGATCCACATGGCGAGT 60.154 57.895 0.00 0.00 33.40 4.18
667 669 1.884464 CCGTGATCCACATGGCGAG 60.884 63.158 0.00 0.00 46.77 5.03
668 670 2.186644 CCGTGATCCACATGGCGA 59.813 61.111 0.00 0.00 46.77 5.54
672 674 0.104855 ATCGGACCGTGATCCACATG 59.895 55.000 14.79 0.00 38.87 3.21
673 675 1.613925 CTATCGGACCGTGATCCACAT 59.386 52.381 14.79 0.00 38.87 3.21
674 676 1.029681 CTATCGGACCGTGATCCACA 58.970 55.000 14.79 0.00 38.87 4.17
675 677 0.318784 GCTATCGGACCGTGATCCAC 60.319 60.000 14.79 0.00 38.87 4.02
676 678 1.792118 CGCTATCGGACCGTGATCCA 61.792 60.000 14.79 0.00 38.87 3.41
677 679 1.081376 CGCTATCGGACCGTGATCC 60.081 63.158 14.79 0.00 35.16 3.36
678 680 4.535425 CGCTATCGGACCGTGATC 57.465 61.111 14.79 1.55 0.00 2.92
688 690 1.849097 GTAACCTTGTCCCGCTATCG 58.151 55.000 0.00 0.00 0.00 2.92
689 691 1.849097 CGTAACCTTGTCCCGCTATC 58.151 55.000 0.00 0.00 0.00 2.08
690 692 0.179092 GCGTAACCTTGTCCCGCTAT 60.179 55.000 0.00 0.00 41.06 2.97
691 693 1.216178 GCGTAACCTTGTCCCGCTA 59.784 57.895 0.00 0.00 41.06 4.26
692 694 2.047560 GCGTAACCTTGTCCCGCT 60.048 61.111 0.00 0.00 41.06 5.52
693 695 2.047560 AGCGTAACCTTGTCCCGC 60.048 61.111 0.00 0.00 44.35 6.13
694 696 1.447314 GGAGCGTAACCTTGTCCCG 60.447 63.158 0.00 0.00 0.00 5.14
695 697 1.078637 GGGAGCGTAACCTTGTCCC 60.079 63.158 0.00 0.00 40.27 4.46
696 698 1.447314 CGGGAGCGTAACCTTGTCC 60.447 63.158 0.00 0.00 0.00 4.02
697 699 1.447314 CCGGGAGCGTAACCTTGTC 60.447 63.158 0.00 0.00 0.00 3.18
698 700 2.660802 CCGGGAGCGTAACCTTGT 59.339 61.111 0.00 0.00 0.00 3.16
699 701 2.818274 GCCGGGAGCGTAACCTTG 60.818 66.667 2.18 0.00 0.00 3.61
700 702 4.091939 GGCCGGGAGCGTAACCTT 62.092 66.667 2.18 0.00 45.17 3.50
721 723 2.517166 GGCGGCTGGATTTCCTCC 60.517 66.667 0.00 0.00 45.19 4.30
722 724 2.897350 CGGCGGCTGGATTTCCTC 60.897 66.667 7.61 0.00 36.82 3.71
723 725 3.717294 ACGGCGGCTGGATTTCCT 61.717 61.111 13.24 0.00 36.82 3.36
724 726 3.508840 CACGGCGGCTGGATTTCC 61.509 66.667 13.24 0.00 0.00 3.13
725 727 1.982073 CTTCACGGCGGCTGGATTTC 61.982 60.000 13.24 0.00 0.00 2.17
726 728 2.033448 TTCACGGCGGCTGGATTT 59.967 55.556 13.24 0.00 0.00 2.17
727 729 2.436646 CTTCACGGCGGCTGGATT 60.437 61.111 13.24 0.00 0.00 3.01
728 730 4.473520 CCTTCACGGCGGCTGGAT 62.474 66.667 13.24 0.00 0.00 3.41
731 733 1.231958 TAAAACCTTCACGGCGGCTG 61.232 55.000 13.24 7.39 35.61 4.85
732 734 1.071814 TAAAACCTTCACGGCGGCT 59.928 52.632 13.24 0.00 35.61 5.52
733 735 1.208358 GTAAAACCTTCACGGCGGC 59.792 57.895 13.24 0.00 35.61 6.53
734 736 1.223417 ACGTAAAACCTTCACGGCGG 61.223 55.000 13.24 0.00 39.91 6.13
735 737 0.111001 CACGTAAAACCTTCACGGCG 60.111 55.000 4.80 4.80 39.91 6.46
736 738 0.236449 CCACGTAAAACCTTCACGGC 59.764 55.000 0.00 0.00 39.91 5.68
737 739 1.528161 GTCCACGTAAAACCTTCACGG 59.472 52.381 0.00 0.00 39.91 4.94
738 740 2.473984 GAGTCCACGTAAAACCTTCACG 59.526 50.000 0.00 0.00 41.32 4.35
739 741 2.804527 GGAGTCCACGTAAAACCTTCAC 59.195 50.000 3.60 0.00 0.00 3.18
740 742 2.546373 CGGAGTCCACGTAAAACCTTCA 60.546 50.000 10.49 0.00 0.00 3.02
741 743 2.064014 CGGAGTCCACGTAAAACCTTC 58.936 52.381 10.49 0.00 0.00 3.46
742 744 1.688197 TCGGAGTCCACGTAAAACCTT 59.312 47.619 10.49 0.00 0.00 3.50
743 745 1.271656 CTCGGAGTCCACGTAAAACCT 59.728 52.381 10.49 0.00 0.00 3.50
744 746 1.706443 CTCGGAGTCCACGTAAAACC 58.294 55.000 10.49 0.00 0.00 3.27
745 747 1.066136 GCTCGGAGTCCACGTAAAAC 58.934 55.000 10.49 0.00 0.00 2.43
746 748 0.387622 CGCTCGGAGTCCACGTAAAA 60.388 55.000 10.49 0.00 0.00 1.52
747 749 1.210931 CGCTCGGAGTCCACGTAAA 59.789 57.895 10.49 0.00 0.00 2.01
748 750 1.915614 GACGCTCGGAGTCCACGTAA 61.916 60.000 18.60 0.00 37.05 3.18
749 751 2.359107 ACGCTCGGAGTCCACGTA 60.359 61.111 17.49 0.00 34.79 3.57
750 752 3.735029 GACGCTCGGAGTCCACGT 61.735 66.667 18.63 18.63 40.11 4.49
751 753 4.813526 CGACGCTCGGAGTCCACG 62.814 72.222 10.49 12.04 36.00 4.94
765 767 4.344474 CTATCCTCCGGCGGCGAC 62.344 72.222 34.49 7.01 0.00 5.19
768 770 4.301027 CACCTATCCTCCGGCGGC 62.301 72.222 23.83 0.00 0.00 6.53
769 771 3.616721 CCACCTATCCTCCGGCGG 61.617 72.222 22.51 22.51 0.00 6.13
770 772 2.131709 TTCCACCTATCCTCCGGCG 61.132 63.158 0.00 0.00 0.00 6.46
771 773 1.446366 GTTCCACCTATCCTCCGGC 59.554 63.158 0.00 0.00 0.00 6.13
772 774 1.408453 GGGTTCCACCTATCCTCCGG 61.408 65.000 0.00 0.00 38.64 5.14
773 775 0.398664 AGGGTTCCACCTATCCTCCG 60.399 60.000 0.00 0.00 39.65 4.63
774 776 2.179424 TCTAGGGTTCCACCTATCCTCC 59.821 54.545 0.00 0.00 42.03 4.30
775 777 3.614568 TCTAGGGTTCCACCTATCCTC 57.385 52.381 0.00 0.00 42.03 3.71
776 778 3.500654 CGATCTAGGGTTCCACCTATCCT 60.501 52.174 0.00 0.00 42.03 3.24
777 779 2.826725 CGATCTAGGGTTCCACCTATCC 59.173 54.545 0.00 0.00 42.03 2.59
778 780 2.231721 GCGATCTAGGGTTCCACCTATC 59.768 54.545 0.00 0.00 42.03 2.08
779 781 2.249139 GCGATCTAGGGTTCCACCTAT 58.751 52.381 0.00 0.00 42.03 2.57
780 782 1.700955 GCGATCTAGGGTTCCACCTA 58.299 55.000 0.00 0.00 42.09 3.08
781 783 1.049289 GGCGATCTAGGGTTCCACCT 61.049 60.000 0.00 0.00 44.75 4.00
782 784 1.049289 AGGCGATCTAGGGTTCCACC 61.049 60.000 0.00 0.00 37.60 4.61
783 785 1.614413 CTAGGCGATCTAGGGTTCCAC 59.386 57.143 5.62 0.00 41.30 4.02
784 786 1.996798 CTAGGCGATCTAGGGTTCCA 58.003 55.000 5.62 0.00 41.30 3.53
791 793 0.112606 TGTCCCCCTAGGCGATCTAG 59.887 60.000 2.05 6.34 43.89 2.43
792 794 0.178970 GTGTCCCCCTAGGCGATCTA 60.179 60.000 2.05 0.00 34.51 1.98
793 795 1.457831 GTGTCCCCCTAGGCGATCT 60.458 63.158 2.05 0.00 34.51 2.75
794 796 1.335132 TTGTGTCCCCCTAGGCGATC 61.335 60.000 2.05 0.15 34.51 3.69
795 797 1.306654 TTGTGTCCCCCTAGGCGAT 60.307 57.895 2.05 0.00 34.51 4.58
796 798 1.987855 CTTGTGTCCCCCTAGGCGA 60.988 63.158 2.05 0.00 34.51 5.54
797 799 1.961180 CTCTTGTGTCCCCCTAGGCG 61.961 65.000 2.05 0.00 34.51 5.52
798 800 1.908483 CTCTTGTGTCCCCCTAGGC 59.092 63.158 2.05 0.00 34.51 3.93
799 801 1.627297 GGCTCTTGTGTCCCCCTAGG 61.627 65.000 0.06 0.06 0.00 3.02
800 802 1.908483 GGCTCTTGTGTCCCCCTAG 59.092 63.158 0.00 0.00 0.00 3.02
801 803 1.987855 CGGCTCTTGTGTCCCCCTA 60.988 63.158 0.00 0.00 0.00 3.53
802 804 3.322466 CGGCTCTTGTGTCCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
803 805 3.316573 CTCGGCTCTTGTGTCCCCC 62.317 68.421 0.00 0.00 0.00 5.40
804 806 2.266055 CTCGGCTCTTGTGTCCCC 59.734 66.667 0.00 0.00 0.00 4.81
805 807 1.617947 ATCCTCGGCTCTTGTGTCCC 61.618 60.000 0.00 0.00 0.00 4.46
806 808 1.067821 CTATCCTCGGCTCTTGTGTCC 59.932 57.143 0.00 0.00 0.00 4.02
807 809 2.025155 TCTATCCTCGGCTCTTGTGTC 58.975 52.381 0.00 0.00 0.00 3.67
808 810 2.145397 TCTATCCTCGGCTCTTGTGT 57.855 50.000 0.00 0.00 0.00 3.72
809 811 3.742433 AATCTATCCTCGGCTCTTGTG 57.258 47.619 0.00 0.00 0.00 3.33
810 812 4.762289 AAAATCTATCCTCGGCTCTTGT 57.238 40.909 0.00 0.00 0.00 3.16
834 836 4.553330 ATCCTCGGCTAGTTCTCAAAAA 57.447 40.909 0.00 0.00 0.00 1.94
835 837 4.954202 TCTATCCTCGGCTAGTTCTCAAAA 59.046 41.667 0.00 0.00 0.00 2.44
836 838 4.533815 TCTATCCTCGGCTAGTTCTCAAA 58.466 43.478 0.00 0.00 0.00 2.69
837 839 4.166246 TCTATCCTCGGCTAGTTCTCAA 57.834 45.455 0.00 0.00 0.00 3.02
838 840 3.859061 TCTATCCTCGGCTAGTTCTCA 57.141 47.619 0.00 0.00 0.00 3.27
839 841 5.241949 TCAAATCTATCCTCGGCTAGTTCTC 59.758 44.000 0.00 0.00 0.00 2.87
840 842 5.141182 TCAAATCTATCCTCGGCTAGTTCT 58.859 41.667 0.00 0.00 0.00 3.01
841 843 5.455056 TCAAATCTATCCTCGGCTAGTTC 57.545 43.478 0.00 0.00 0.00 3.01
842 844 6.722129 ACTATCAAATCTATCCTCGGCTAGTT 59.278 38.462 0.00 0.00 0.00 2.24
843 845 6.249951 ACTATCAAATCTATCCTCGGCTAGT 58.750 40.000 0.00 0.00 0.00 2.57
844 846 6.601613 AGACTATCAAATCTATCCTCGGCTAG 59.398 42.308 0.00 0.00 0.00 3.42
845 847 6.486056 AGACTATCAAATCTATCCTCGGCTA 58.514 40.000 0.00 0.00 0.00 3.93
846 848 5.329399 AGACTATCAAATCTATCCTCGGCT 58.671 41.667 0.00 0.00 0.00 5.52
847 849 5.184096 TGAGACTATCAAATCTATCCTCGGC 59.816 44.000 0.00 0.00 34.02 5.54
848 850 6.624861 GCTGAGACTATCAAATCTATCCTCGG 60.625 46.154 0.00 0.00 37.52 4.63
849 851 6.321717 GCTGAGACTATCAAATCTATCCTCG 58.678 44.000 0.00 0.00 37.52 4.63
850 852 6.624861 CGGCTGAGACTATCAAATCTATCCTC 60.625 46.154 0.00 0.00 37.52 3.71
851 853 5.184864 CGGCTGAGACTATCAAATCTATCCT 59.815 44.000 0.00 0.00 37.52 3.24
852 854 5.047660 ACGGCTGAGACTATCAAATCTATCC 60.048 44.000 0.00 0.00 37.52 2.59
853 855 6.019779 ACGGCTGAGACTATCAAATCTATC 57.980 41.667 0.00 0.00 37.52 2.08
854 856 6.412362 AACGGCTGAGACTATCAAATCTAT 57.588 37.500 0.00 0.00 37.52 1.98
855 857 5.854010 AACGGCTGAGACTATCAAATCTA 57.146 39.130 0.00 0.00 37.52 1.98
856 858 4.744795 AACGGCTGAGACTATCAAATCT 57.255 40.909 0.00 0.00 37.52 2.40
857 859 4.494855 GCAAACGGCTGAGACTATCAAATC 60.495 45.833 0.00 0.00 37.52 2.17
858 860 3.375299 GCAAACGGCTGAGACTATCAAAT 59.625 43.478 0.00 0.00 37.52 2.32
859 861 2.742053 GCAAACGGCTGAGACTATCAAA 59.258 45.455 0.00 0.00 37.52 2.69
860 862 2.346803 GCAAACGGCTGAGACTATCAA 58.653 47.619 0.00 0.00 37.52 2.57
861 863 2.010145 GCAAACGGCTGAGACTATCA 57.990 50.000 0.00 0.00 40.25 2.15
872 874 4.481112 CCCGCATGAGCAAACGGC 62.481 66.667 0.00 0.00 44.29 5.68
873 875 2.625823 AACCCGCATGAGCAAACGG 61.626 57.895 0.00 0.00 45.21 4.44
874 876 1.442520 CAACCCGCATGAGCAAACG 60.443 57.895 0.00 0.00 42.27 3.60
934 936 5.769484 TCTTCTAGTATTAGGCCAACTCG 57.231 43.478 5.01 0.00 0.00 4.18
956 958 2.543777 TTTTGTAGGAGCAGCGTCTT 57.456 45.000 0.00 0.00 0.00 3.01
957 959 2.037251 TCTTTTTGTAGGAGCAGCGTCT 59.963 45.455 0.00 0.00 0.00 4.18
959 961 2.543777 TCTTTTTGTAGGAGCAGCGT 57.456 45.000 0.00 0.00 0.00 5.07
961 963 5.831997 TCTTTTTCTTTTTGTAGGAGCAGC 58.168 37.500 0.00 0.00 0.00 5.25
962 964 8.702163 TTTTCTTTTTCTTTTTGTAGGAGCAG 57.298 30.769 0.00 0.00 0.00 4.24
986 2537 0.472471 TCAGGTGGAGGCGTCTTTTT 59.528 50.000 6.34 0.00 0.00 1.94
988 2539 0.832135 TCTCAGGTGGAGGCGTCTTT 60.832 55.000 6.34 0.00 44.19 2.52
998 2549 1.185618 TCGTTCAGGGTCTCAGGTGG 61.186 60.000 0.00 0.00 0.00 4.61
1008 2623 2.125350 GGAGCAGCTCGTTCAGGG 60.125 66.667 16.47 0.00 0.00 4.45
1475 3193 0.249073 GGCGATGCAGTAGACGTGAT 60.249 55.000 0.00 0.00 0.00 3.06
1543 3261 3.108521 CGTCCTCGGTTGTCTTCAG 57.891 57.895 0.00 0.00 0.00 3.02
1749 3467 3.283684 TTCACCTTGCCGTTGCCG 61.284 61.111 0.00 0.00 36.33 5.69
1863 3581 2.190981 CGGTAGTCGTACAATCCAAGC 58.809 52.381 0.00 0.00 0.00 4.01
1920 3638 3.005539 GACCAGGCCCAGCTCTCA 61.006 66.667 0.00 0.00 0.00 3.27
1958 3676 1.817099 GAGAAGGCCATCACCTGCG 60.817 63.158 11.19 0.00 40.80 5.18
2078 3796 6.775594 TCCATTCATACCGTATGGAGATAG 57.224 41.667 16.80 4.80 44.24 2.08
2150 3868 2.158900 TCCATCGAGAAGAAGGAATGCC 60.159 50.000 0.00 0.00 43.10 4.40
2620 4510 0.984995 ACCAGGACAAAGTAGCCCTC 59.015 55.000 0.00 0.00 0.00 4.30
2694 4860 7.814587 CCCAGAATTTCCTCTTTGTTGATTAAC 59.185 37.037 0.00 0.00 37.32 2.01
2945 5114 5.539582 TGTATTTTCAGCCGTCATGTAAC 57.460 39.130 0.00 0.00 0.00 2.50
3141 5333 4.730949 ATTTGGGCATCTCAATCACAAG 57.269 40.909 0.00 0.00 0.00 3.16
3233 5445 8.748380 ACAAGATTGCAACTTAAAAGATAAGC 57.252 30.769 0.00 0.00 0.00 3.09
3326 5538 7.147983 GGAGCGATATGAGGTGAAGTAATATCT 60.148 40.741 0.00 0.00 31.10 1.98
3342 5554 6.455647 TGGTTTTATACAGAGGAGCGATATG 58.544 40.000 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.