Multiple sequence alignment - TraesCS7D01G321100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G321100 chr7D 100.000 5002 0 0 1 5002 411301034 411306035 0.000000e+00 9238.0
1 TraesCS7D01G321100 chr7D 94.660 206 10 1 4707 4911 65790300 65790095 8.080000e-83 318.0
2 TraesCS7D01G321100 chr7B 95.966 4512 136 19 224 4712 425708950 425713438 0.000000e+00 7282.0
3 TraesCS7D01G321100 chr7B 91.189 227 19 1 1 227 425666564 425666789 1.750000e-79 307.0
4 TraesCS7D01G321100 chr7A 96.123 2347 70 9 2190 4518 472190376 472192719 0.000000e+00 3810.0
5 TraesCS7D01G321100 chr7A 93.371 1961 95 15 146 2103 472188456 472190384 0.000000e+00 2868.0
6 TraesCS7D01G321100 chr4D 97.959 196 4 0 4712 4907 46049234 46049039 1.720000e-89 340.0
7 TraesCS7D01G321100 chr4D 96.482 199 6 1 4710 4907 118311232 118311034 1.340000e-85 327.0
8 TraesCS7D01G321100 chr4D 82.883 111 18 1 4545 4655 296672922 296672813 1.150000e-16 99.0
9 TraesCS7D01G321100 chr2D 97.015 201 4 2 4709 4907 248684604 248684804 2.230000e-88 337.0
10 TraesCS7D01G321100 chr6D 96.954 197 5 1 4712 4907 269564565 269564369 3.730000e-86 329.0
11 TraesCS7D01G321100 chr6D 96.020 201 7 1 4710 4909 60237981 60237781 4.830000e-85 326.0
12 TraesCS7D01G321100 chr5D 96.020 201 7 1 4710 4909 440743533 440743733 4.830000e-85 326.0
13 TraesCS7D01G321100 chr5D 85.294 170 21 4 4545 4711 526122225 526122057 6.660000e-39 172.0
14 TraesCS7D01G321100 chr5D 86.301 73 8 2 4641 4711 38321297 38321369 1.490000e-10 78.7
15 TraesCS7D01G321100 chr3D 96.020 201 7 1 4710 4909 205017230 205017030 4.830000e-85 326.0
16 TraesCS7D01G321100 chr2A 96.020 201 7 1 4710 4909 161264051 161263851 4.830000e-85 326.0
17 TraesCS7D01G321100 chr2A 82.474 97 12 5 2095 2191 431390050 431389959 4.150000e-11 80.5
18 TraesCS7D01G321100 chr5B 86.228 167 19 4 4545 4711 243433000 243432838 1.430000e-40 178.0
19 TraesCS7D01G321100 chr5B 85.106 141 17 1 2095 2235 58388863 58388999 1.880000e-29 141.0
20 TraesCS7D01G321100 chr5B 81.119 143 23 1 2095 2237 636697734 636697596 1.470000e-20 111.0
21 TraesCS7D01G321100 chr5A 85.629 167 22 2 4545 4711 295089968 295089804 1.850000e-39 174.0
22 TraesCS7D01G321100 chr5A 82.143 168 27 2 4546 4711 472902025 472902191 1.880000e-29 141.0
23 TraesCS7D01G321100 chr4A 86.525 141 15 1 2095 2235 590222588 590222452 8.670000e-33 152.0
24 TraesCS7D01G321100 chr3B 81.287 171 25 7 4545 4711 813984916 813984749 1.130000e-26 132.0
25 TraesCS7D01G321100 chr2B 82.877 146 21 1 2092 2237 54702542 54702683 1.460000e-25 128.0
26 TraesCS7D01G321100 chr2B 85.088 114 11 3 2087 2199 652169275 652169167 1.470000e-20 111.0
27 TraesCS7D01G321100 chr3A 79.042 167 32 3 4545 4709 737302275 737302110 1.470000e-20 111.0
28 TraesCS7D01G321100 chr1D 87.500 96 11 1 4576 4671 488583530 488583436 5.290000e-20 110.0
29 TraesCS7D01G321100 chr1D 78.107 169 20 9 4545 4711 336373926 336374079 1.920000e-14 91.6
30 TraesCS7D01G321100 chr4B 80.882 136 22 1 2095 2230 235382358 235382227 2.460000e-18 104.0
31 TraesCS7D01G321100 chr1A 80.142 141 21 6 2113 2251 21338143 21338278 1.150000e-16 99.0
32 TraesCS7D01G321100 chr1A 79.720 143 24 2 2095 2237 404259987 404259850 1.150000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G321100 chr7D 411301034 411306035 5001 False 9238 9238 100.000 1 5002 1 chr7D.!!$F1 5001
1 TraesCS7D01G321100 chr7B 425708950 425713438 4488 False 7282 7282 95.966 224 4712 1 chr7B.!!$F2 4488
2 TraesCS7D01G321100 chr7A 472188456 472192719 4263 False 3339 3810 94.747 146 4518 2 chr7A.!!$F1 4372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.183014 TTATTTTGCGGGGCCGGATA 59.817 50.000 16.19 0.70 39.92 2.59 F
130 131 0.402504 ATTTTGCGGGGCCGGATATA 59.597 50.000 16.19 0.00 39.92 0.86 F
131 132 0.183014 TTTTGCGGGGCCGGATATAA 59.817 50.000 16.19 1.87 39.92 0.98 F
2179 2182 0.309922 CCAAGGCTCATGCTTATGCG 59.690 55.000 0.00 0.00 43.34 4.73 F
2599 2607 1.004394 TCCTACGCCTCTCAGAAGACA 59.996 52.381 0.00 0.00 0.00 3.41 F
3471 3487 1.209261 TGTGTGACAAGCTTGAGGTCA 59.791 47.619 32.50 21.82 39.09 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1753 0.901124 AGGATGCTCTTCTGACGCTT 59.099 50.000 0.00 0.0 0.00 4.68 R
2110 2113 1.730064 CACGCACAATTAACGCCTAGT 59.270 47.619 0.00 0.0 0.00 2.57 R
2217 2220 2.187493 CGCGACTAGGCTCTAGGCA 61.187 63.158 0.00 0.0 44.01 4.75 R
3545 3561 0.038159 CGTTCTCTTCCTCCACGCTT 60.038 55.000 0.00 0.0 0.00 4.68 R
3731 3747 1.078848 GCAGTACCAGCACTCCAGG 60.079 63.158 3.23 0.0 0.00 4.45 R
4887 4919 0.253160 AGGCCCTGTACAATGGGAGA 60.253 55.000 21.53 0.0 46.15 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.728845 GCTAAATCGCAACTGGGATAGA 58.271 45.455 9.42 1.23 45.35 1.98
22 23 3.743396 GCTAAATCGCAACTGGGATAGAG 59.257 47.826 9.42 10.29 45.35 2.43
23 24 2.246719 AATCGCAACTGGGATAGAGC 57.753 50.000 9.42 0.00 45.35 4.09
24 25 1.418334 ATCGCAACTGGGATAGAGCT 58.582 50.000 7.44 0.00 44.45 4.09
25 26 2.067365 TCGCAACTGGGATAGAGCTA 57.933 50.000 0.00 0.00 31.73 3.32
26 27 1.957177 TCGCAACTGGGATAGAGCTAG 59.043 52.381 0.00 0.00 31.73 3.42
27 28 1.604185 CGCAACTGGGATAGAGCTAGC 60.604 57.143 6.62 6.62 0.00 3.42
28 29 1.604185 GCAACTGGGATAGAGCTAGCG 60.604 57.143 9.55 0.00 0.00 4.26
29 30 1.000283 CAACTGGGATAGAGCTAGCGG 60.000 57.143 9.55 0.00 0.00 5.52
30 31 1.182385 ACTGGGATAGAGCTAGCGGC 61.182 60.000 9.55 5.77 42.19 6.53
31 32 1.152546 TGGGATAGAGCTAGCGGCA 60.153 57.895 9.55 0.00 44.79 5.69
32 33 0.759060 TGGGATAGAGCTAGCGGCAA 60.759 55.000 9.55 0.00 44.79 4.52
33 34 0.393077 GGGATAGAGCTAGCGGCAAA 59.607 55.000 9.55 0.00 44.79 3.68
34 35 1.202651 GGGATAGAGCTAGCGGCAAAA 60.203 52.381 9.55 0.00 44.79 2.44
35 36 2.551071 GGGATAGAGCTAGCGGCAAAAT 60.551 50.000 9.55 0.00 44.79 1.82
36 37 2.481952 GGATAGAGCTAGCGGCAAAATG 59.518 50.000 9.55 0.00 44.79 2.32
37 38 1.953559 TAGAGCTAGCGGCAAAATGG 58.046 50.000 9.55 0.00 44.79 3.16
38 39 0.749454 AGAGCTAGCGGCAAAATGGG 60.749 55.000 9.55 0.00 44.79 4.00
39 40 1.728490 GAGCTAGCGGCAAAATGGGG 61.728 60.000 9.55 0.00 44.79 4.96
40 41 2.785425 GCTAGCGGCAAAATGGGGG 61.785 63.158 0.00 0.00 41.35 5.40
41 42 1.077068 CTAGCGGCAAAATGGGGGA 60.077 57.895 1.45 0.00 0.00 4.81
42 43 1.077068 TAGCGGCAAAATGGGGGAG 60.077 57.895 1.45 0.00 0.00 4.30
43 44 2.566111 TAGCGGCAAAATGGGGGAGG 62.566 60.000 1.45 0.00 0.00 4.30
44 45 2.358619 CGGCAAAATGGGGGAGGA 59.641 61.111 0.00 0.00 0.00 3.71
45 46 1.754234 CGGCAAAATGGGGGAGGAG 60.754 63.158 0.00 0.00 0.00 3.69
46 47 1.381735 GGCAAAATGGGGGAGGAGG 60.382 63.158 0.00 0.00 0.00 4.30
47 48 1.381735 GCAAAATGGGGGAGGAGGG 60.382 63.158 0.00 0.00 0.00 4.30
48 49 1.311059 CAAAATGGGGGAGGAGGGG 59.689 63.158 0.00 0.00 0.00 4.79
49 50 1.941281 AAAATGGGGGAGGAGGGGG 60.941 63.158 0.00 0.00 0.00 5.40
50 51 2.461837 AAAATGGGGGAGGAGGGGGA 62.462 60.000 0.00 0.00 0.00 4.81
51 52 2.883316 AAATGGGGGAGGAGGGGGAG 62.883 65.000 0.00 0.00 0.00 4.30
55 56 4.825679 GGGAGGAGGGGGAGGGTG 62.826 77.778 0.00 0.00 0.00 4.61
60 61 4.741239 GAGGGGGAGGGTGCCAGA 62.741 72.222 0.00 0.00 0.00 3.86
61 62 4.044390 AGGGGGAGGGTGCCAGAT 62.044 66.667 0.00 0.00 0.00 2.90
62 63 3.023735 GGGGGAGGGTGCCAGATT 61.024 66.667 0.00 0.00 0.00 2.40
63 64 2.626467 GGGGGAGGGTGCCAGATTT 61.626 63.158 0.00 0.00 0.00 2.17
64 65 1.380380 GGGGAGGGTGCCAGATTTG 60.380 63.158 0.00 0.00 0.00 2.32
75 76 1.888018 CAGATTTGGCTGGTGCAGG 59.112 57.895 0.00 0.00 41.91 4.85
82 83 3.064324 GCTGGTGCAGGCCGAAAT 61.064 61.111 0.00 0.00 39.41 2.17
83 84 1.748879 GCTGGTGCAGGCCGAAATA 60.749 57.895 0.00 0.00 39.41 1.40
84 85 1.103398 GCTGGTGCAGGCCGAAATAT 61.103 55.000 0.00 0.00 39.41 1.28
85 86 0.664761 CTGGTGCAGGCCGAAATATG 59.335 55.000 0.00 0.00 0.00 1.78
86 87 0.254462 TGGTGCAGGCCGAAATATGA 59.746 50.000 0.00 0.00 0.00 2.15
87 88 1.340502 TGGTGCAGGCCGAAATATGAA 60.341 47.619 0.00 0.00 0.00 2.57
88 89 1.748493 GGTGCAGGCCGAAATATGAAA 59.252 47.619 0.00 0.00 0.00 2.69
89 90 2.362077 GGTGCAGGCCGAAATATGAAAT 59.638 45.455 0.00 0.00 0.00 2.17
90 91 3.568007 GGTGCAGGCCGAAATATGAAATA 59.432 43.478 0.00 0.00 0.00 1.40
91 92 4.037446 GGTGCAGGCCGAAATATGAAATAA 59.963 41.667 0.00 0.00 29.06 1.40
92 93 5.451242 GGTGCAGGCCGAAATATGAAATAAA 60.451 40.000 0.00 0.00 29.06 1.40
93 94 6.039616 GTGCAGGCCGAAATATGAAATAAAA 58.960 36.000 0.00 0.00 29.06 1.52
94 95 6.533367 GTGCAGGCCGAAATATGAAATAAAAA 59.467 34.615 0.00 0.00 29.06 1.94
117 118 5.352643 AAGTATATCGGCGGTTATTTTGC 57.647 39.130 7.21 0.00 0.00 3.68
118 119 2.961522 ATATCGGCGGTTATTTTGCG 57.038 45.000 7.21 0.00 0.00 4.85
119 120 0.938713 TATCGGCGGTTATTTTGCGG 59.061 50.000 7.21 0.00 0.00 5.69
120 121 1.720694 ATCGGCGGTTATTTTGCGGG 61.721 55.000 7.21 0.00 0.00 6.13
121 122 2.492560 GGCGGTTATTTTGCGGGG 59.507 61.111 0.00 0.00 0.00 5.73
122 123 2.202690 GCGGTTATTTTGCGGGGC 60.203 61.111 0.00 0.00 0.00 5.80
123 124 2.492560 CGGTTATTTTGCGGGGCC 59.507 61.111 0.00 0.00 0.00 5.80
124 125 2.492560 GGTTATTTTGCGGGGCCG 59.507 61.111 0.00 0.00 43.09 6.13
125 126 2.492560 GTTATTTTGCGGGGCCGG 59.507 61.111 6.75 6.75 40.19 6.13
126 127 2.047443 GTTATTTTGCGGGGCCGGA 61.047 57.895 16.19 0.00 40.19 5.14
127 128 1.076632 TTATTTTGCGGGGCCGGAT 60.077 52.632 16.19 1.72 39.92 4.18
128 129 0.183014 TTATTTTGCGGGGCCGGATA 59.817 50.000 16.19 0.70 39.92 2.59
129 130 0.402504 TATTTTGCGGGGCCGGATAT 59.597 50.000 16.19 4.38 39.92 1.63
130 131 0.402504 ATTTTGCGGGGCCGGATATA 59.597 50.000 16.19 0.00 39.92 0.86
131 132 0.183014 TTTTGCGGGGCCGGATATAA 59.817 50.000 16.19 1.87 39.92 0.98
132 133 0.535553 TTTGCGGGGCCGGATATAAC 60.536 55.000 16.19 0.00 39.92 1.89
133 134 2.433664 GCGGGGCCGGATATAACG 60.434 66.667 16.19 2.44 40.19 3.18
134 135 2.433664 CGGGGCCGGATATAACGC 60.434 66.667 5.05 0.00 35.56 4.84
135 136 2.745037 GGGGCCGGATATAACGCA 59.255 61.111 5.05 0.00 0.00 5.24
136 137 1.298667 GGGGCCGGATATAACGCAT 59.701 57.895 5.05 0.00 0.00 4.73
137 138 0.538118 GGGGCCGGATATAACGCATA 59.462 55.000 5.05 0.00 0.00 3.14
138 139 1.140252 GGGGCCGGATATAACGCATAT 59.860 52.381 5.05 0.00 32.19 1.78
139 140 2.210116 GGGCCGGATATAACGCATATG 58.790 52.381 5.05 0.00 29.49 1.78
140 141 2.159014 GGGCCGGATATAACGCATATGA 60.159 50.000 5.05 0.00 29.49 2.15
141 142 2.864343 GGCCGGATATAACGCATATGAC 59.136 50.000 5.05 0.00 29.49 3.06
142 143 3.430374 GGCCGGATATAACGCATATGACT 60.430 47.826 5.05 0.00 29.49 3.41
143 144 3.551890 GCCGGATATAACGCATATGACTG 59.448 47.826 5.05 0.00 29.49 3.51
144 145 4.112634 CCGGATATAACGCATATGACTGG 58.887 47.826 6.97 0.00 29.49 4.00
145 146 4.381612 CCGGATATAACGCATATGACTGGT 60.382 45.833 6.97 0.00 29.49 4.00
146 147 4.562789 CGGATATAACGCATATGACTGGTG 59.437 45.833 6.97 0.00 29.49 4.17
147 148 5.479306 GGATATAACGCATATGACTGGTGT 58.521 41.667 6.97 0.00 29.49 4.16
155 156 3.849911 CATATGACTGGTGTCTCGTTGT 58.150 45.455 0.00 0.00 43.29 3.32
158 159 1.754803 TGACTGGTGTCTCGTTGTCTT 59.245 47.619 0.00 0.00 43.29 3.01
191 192 2.223947 GCTCGAATCCCCTCTCTTTCTC 60.224 54.545 0.00 0.00 0.00 2.87
193 194 1.537135 CGAATCCCCTCTCTTTCTCGC 60.537 57.143 0.00 0.00 0.00 5.03
195 196 1.799933 ATCCCCTCTCTTTCTCGCAT 58.200 50.000 0.00 0.00 0.00 4.73
202 203 1.547820 TCTCTTTCTCGCATGAGCACT 59.452 47.619 0.00 0.00 42.26 4.40
205 206 0.737367 TTTCTCGCATGAGCACTCCG 60.737 55.000 0.00 0.00 42.26 4.63
232 233 2.125106 CCGTCCTTGCTGCTACCC 60.125 66.667 0.00 0.00 0.00 3.69
238 239 1.327690 CCTTGCTGCTACCCCGAGTA 61.328 60.000 0.00 0.00 0.00 2.59
344 345 2.025156 CCGCTATTCGTACGCCGT 59.975 61.111 11.24 0.00 37.94 5.68
471 472 0.987294 CTTCACCCCACTGACCATCT 59.013 55.000 0.00 0.00 0.00 2.90
489 490 3.278072 TAGGACCTCCACCGTCGCT 62.278 63.158 0.00 0.00 38.89 4.93
490 491 2.776370 TAGGACCTCCACCGTCGCTT 62.776 60.000 0.00 0.00 38.89 4.68
514 517 1.316706 GCTCCTCTAGTCGCACCTGT 61.317 60.000 0.00 0.00 0.00 4.00
619 622 5.300752 CACGGGAGCAGATACAAATTAGAT 58.699 41.667 0.00 0.00 0.00 1.98
644 647 2.224606 CATGCCGAATTGCCTATGTCT 58.775 47.619 0.00 0.00 0.00 3.41
645 648 3.402110 CATGCCGAATTGCCTATGTCTA 58.598 45.455 0.00 0.00 0.00 2.59
646 649 3.769739 TGCCGAATTGCCTATGTCTAT 57.230 42.857 0.00 0.00 0.00 1.98
690 693 4.322801 GGCAGTATGGACCATACAGATACC 60.323 50.000 35.34 25.94 46.30 2.73
1750 1753 3.767131 GGCAACCTAAATAAAGGCCAAGA 59.233 43.478 5.01 0.00 40.62 3.02
2139 2142 2.292103 AATTGTGCGTGTGTTTTGCT 57.708 40.000 0.00 0.00 0.00 3.91
2179 2182 0.309922 CCAAGGCTCATGCTTATGCG 59.690 55.000 0.00 0.00 43.34 4.73
2217 2220 2.420022 CAGTGCTAGGCGTTTTGCTATT 59.580 45.455 0.00 0.00 45.43 1.73
2406 2414 6.197468 CACACGTAAACCAAAATTGTCGAATT 59.803 34.615 0.00 0.00 32.87 2.17
2570 2578 3.120408 CGTGTAGCTGTGTAGACGTTAGT 60.120 47.826 0.00 0.00 35.54 2.24
2572 2580 3.817084 TGTAGCTGTGTAGACGTTAGTGT 59.183 43.478 0.00 0.00 0.00 3.55
2599 2607 1.004394 TCCTACGCCTCTCAGAAGACA 59.996 52.381 0.00 0.00 0.00 3.41
3030 3040 2.094957 CGGTGTGTTTGTGGACAGTTTT 60.095 45.455 0.00 0.00 0.00 2.43
3110 3120 2.838637 AGGAAACAAGTTTGGGTGGA 57.161 45.000 2.45 0.00 32.11 4.02
3242 3252 1.938625 GCACTTGCAAACAATGTGGT 58.061 45.000 15.17 0.00 41.59 4.16
3408 3424 2.661574 AAAGGGAAAGGCTGCAGGCA 62.662 55.000 37.94 0.00 44.01 4.75
3424 3440 3.152341 CAGGCACCAAGAAGAATGTTCT 58.848 45.455 0.00 0.00 39.74 3.01
3471 3487 1.209261 TGTGTGACAAGCTTGAGGTCA 59.791 47.619 32.50 21.82 39.09 4.02
3545 3561 3.706373 GAAGGGAGCTCGGTGCCA 61.706 66.667 7.83 0.00 44.23 4.92
4250 4269 6.037172 ACGCTTCTTTTATGTAGGCTGTATTG 59.963 38.462 0.00 0.00 0.00 1.90
4438 4462 5.848406 ACAATCCTAATTTTGCAAACCGAA 58.152 33.333 12.39 0.00 0.00 4.30
4518 4543 2.987821 GACGTGCTTAGAGAGGTGTTTC 59.012 50.000 0.00 0.00 0.00 2.78
4519 4544 2.628657 ACGTGCTTAGAGAGGTGTTTCT 59.371 45.455 0.00 0.00 0.00 2.52
4536 4561 6.145535 GTGTTTCTGAAGAATGCACCTTTAG 58.854 40.000 13.17 13.17 35.86 1.85
4537 4562 5.241506 TGTTTCTGAAGAATGCACCTTTAGG 59.758 40.000 16.98 0.00 36.09 2.69
4582 4612 2.233676 TCAGGTACGAGCACATGACAAT 59.766 45.455 0.00 0.00 34.53 2.71
4594 4624 7.181143 AGCACATGACAATTTTGAATGTTTC 57.819 32.000 0.00 8.12 37.11 2.78
4619 4649 4.251543 TGACAAGTTTAGTGATGCGAGA 57.748 40.909 0.00 0.00 0.00 4.04
4657 4687 3.044986 CCAAAGCATGACAACTTTCGTG 58.955 45.455 0.00 0.00 33.92 4.35
4681 4711 9.636965 GTGCTTCAATTTATTTTTGACAGAAAC 57.363 29.630 0.00 0.00 33.03 2.78
4696 4728 1.672881 AGAAACTTGCTGTGTCACTGC 59.327 47.619 23.67 23.67 42.44 4.40
4712 4744 5.181811 TGTCACTGCAATTTGTCATCCTTAG 59.818 40.000 0.00 0.00 0.00 2.18
4713 4745 4.701651 TCACTGCAATTTGTCATCCTTAGG 59.298 41.667 0.00 0.00 0.00 2.69
4714 4746 3.445096 ACTGCAATTTGTCATCCTTAGGC 59.555 43.478 0.00 0.00 0.00 3.93
4715 4747 2.760092 TGCAATTTGTCATCCTTAGGCC 59.240 45.455 0.00 0.00 0.00 5.19
4716 4748 3.026694 GCAATTTGTCATCCTTAGGCCT 58.973 45.455 11.78 11.78 0.00 5.19
4717 4749 3.448660 GCAATTTGTCATCCTTAGGCCTT 59.551 43.478 12.58 0.00 0.00 4.35
4718 4750 4.678840 GCAATTTGTCATCCTTAGGCCTTG 60.679 45.833 12.58 1.79 0.00 3.61
4719 4751 3.806949 TTTGTCATCCTTAGGCCTTGT 57.193 42.857 12.58 0.00 0.00 3.16
4720 4752 4.919774 TTTGTCATCCTTAGGCCTTGTA 57.080 40.909 12.58 0.00 0.00 2.41
4721 4753 3.906720 TGTCATCCTTAGGCCTTGTAC 57.093 47.619 12.58 3.93 0.00 2.90
4722 4754 3.178046 TGTCATCCTTAGGCCTTGTACA 58.822 45.455 12.58 6.57 0.00 2.90
4723 4755 3.585289 TGTCATCCTTAGGCCTTGTACAA 59.415 43.478 12.58 8.28 0.00 2.41
4724 4756 4.227300 TGTCATCCTTAGGCCTTGTACAAT 59.773 41.667 12.58 0.00 0.00 2.71
4725 4757 4.576463 GTCATCCTTAGGCCTTGTACAATG 59.424 45.833 12.58 7.68 0.00 2.82
4726 4758 3.644966 TCCTTAGGCCTTGTACAATGG 57.355 47.619 12.58 13.26 0.00 3.16
4727 4759 2.241176 TCCTTAGGCCTTGTACAATGGG 59.759 50.000 12.58 14.91 0.00 4.00
4728 4760 2.241176 CCTTAGGCCTTGTACAATGGGA 59.759 50.000 12.58 0.00 0.00 4.37
4729 4761 3.545703 CTTAGGCCTTGTACAATGGGAG 58.454 50.000 12.58 1.65 0.00 4.30
4730 4762 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
4731 4763 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
4732 4764 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
4733 4765 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
4734 4766 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
4735 4767 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
4736 4768 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
4737 4769 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
4738 4770 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
4739 4771 0.625849 ACAATGGGAGGTGCTTAGGG 59.374 55.000 0.00 0.00 0.00 3.53
4740 4772 0.918983 CAATGGGAGGTGCTTAGGGA 59.081 55.000 0.00 0.00 0.00 4.20
4741 4773 1.133976 CAATGGGAGGTGCTTAGGGAG 60.134 57.143 0.00 0.00 0.00 4.30
4742 4774 0.695803 ATGGGAGGTGCTTAGGGAGG 60.696 60.000 0.00 0.00 0.00 4.30
4743 4775 1.307084 GGGAGGTGCTTAGGGAGGT 60.307 63.158 0.00 0.00 0.00 3.85
4744 4776 1.627297 GGGAGGTGCTTAGGGAGGTG 61.627 65.000 0.00 0.00 0.00 4.00
4745 4777 1.222113 GAGGTGCTTAGGGAGGTGC 59.778 63.158 0.00 0.00 0.00 5.01
4746 4778 1.229658 AGGTGCTTAGGGAGGTGCT 60.230 57.895 0.00 0.00 0.00 4.40
4747 4779 0.842467 AGGTGCTTAGGGAGGTGCTT 60.842 55.000 0.00 0.00 0.00 3.91
4748 4780 0.909623 GGTGCTTAGGGAGGTGCTTA 59.090 55.000 0.00 0.00 0.00 3.09
4749 4781 1.134371 GGTGCTTAGGGAGGTGCTTAG 60.134 57.143 0.00 0.00 0.00 2.18
4750 4782 1.831736 GTGCTTAGGGAGGTGCTTAGA 59.168 52.381 0.00 0.00 0.00 2.10
4751 4783 2.111384 TGCTTAGGGAGGTGCTTAGAG 58.889 52.381 0.00 0.00 0.00 2.43
4752 4784 2.292257 TGCTTAGGGAGGTGCTTAGAGA 60.292 50.000 0.00 0.00 0.00 3.10
4753 4785 2.766828 GCTTAGGGAGGTGCTTAGAGAA 59.233 50.000 0.00 0.00 0.00 2.87
4754 4786 3.197983 GCTTAGGGAGGTGCTTAGAGAAA 59.802 47.826 0.00 0.00 0.00 2.52
4755 4787 4.141597 GCTTAGGGAGGTGCTTAGAGAAAT 60.142 45.833 0.00 0.00 0.00 2.17
4756 4788 5.070580 GCTTAGGGAGGTGCTTAGAGAAATA 59.929 44.000 0.00 0.00 0.00 1.40
4757 4789 6.408206 GCTTAGGGAGGTGCTTAGAGAAATAA 60.408 42.308 0.00 0.00 0.00 1.40
4758 4790 7.504926 TTAGGGAGGTGCTTAGAGAAATAAA 57.495 36.000 0.00 0.00 0.00 1.40
4759 4791 5.746284 AGGGAGGTGCTTAGAGAAATAAAC 58.254 41.667 0.00 0.00 0.00 2.01
4760 4792 4.882427 GGGAGGTGCTTAGAGAAATAAACC 59.118 45.833 0.00 0.00 0.00 3.27
4761 4793 5.497474 GGAGGTGCTTAGAGAAATAAACCA 58.503 41.667 0.00 0.00 0.00 3.67
4762 4794 5.586643 GGAGGTGCTTAGAGAAATAAACCAG 59.413 44.000 0.00 0.00 0.00 4.00
4763 4795 6.374417 AGGTGCTTAGAGAAATAAACCAGA 57.626 37.500 0.00 0.00 0.00 3.86
4764 4796 6.174049 AGGTGCTTAGAGAAATAAACCAGAC 58.826 40.000 0.00 0.00 0.00 3.51
4765 4797 6.013293 AGGTGCTTAGAGAAATAAACCAGACT 60.013 38.462 0.00 0.00 0.00 3.24
4766 4798 6.655425 GGTGCTTAGAGAAATAAACCAGACTT 59.345 38.462 0.00 0.00 0.00 3.01
4767 4799 7.175119 GGTGCTTAGAGAAATAAACCAGACTTT 59.825 37.037 0.00 0.00 0.00 2.66
4768 4800 8.231161 GTGCTTAGAGAAATAAACCAGACTTTC 58.769 37.037 0.00 0.00 0.00 2.62
4769 4801 7.390718 TGCTTAGAGAAATAAACCAGACTTTCC 59.609 37.037 0.00 0.00 0.00 3.13
4770 4802 7.608376 GCTTAGAGAAATAAACCAGACTTTCCT 59.392 37.037 0.00 0.00 0.00 3.36
4771 4803 9.508642 CTTAGAGAAATAAACCAGACTTTCCTT 57.491 33.333 0.00 0.00 0.00 3.36
4774 4806 9.508642 AGAGAAATAAACCAGACTTTCCTTAAG 57.491 33.333 0.00 0.00 39.87 1.85
4775 4807 8.112016 AGAAATAAACCAGACTTTCCTTAAGC 57.888 34.615 0.00 0.00 37.37 3.09
4776 4808 7.724061 AGAAATAAACCAGACTTTCCTTAAGCA 59.276 33.333 0.00 0.00 37.37 3.91
4777 4809 6.819397 ATAAACCAGACTTTCCTTAAGCAC 57.181 37.500 0.00 0.00 37.37 4.40
4778 4810 3.141767 ACCAGACTTTCCTTAAGCACC 57.858 47.619 0.00 0.00 37.37 5.01
4779 4811 2.076863 CCAGACTTTCCTTAAGCACCG 58.923 52.381 0.00 0.00 37.37 4.94
4780 4812 2.076863 CAGACTTTCCTTAAGCACCGG 58.923 52.381 0.00 0.00 37.37 5.28
4781 4813 1.697982 AGACTTTCCTTAAGCACCGGT 59.302 47.619 0.00 0.00 37.37 5.28
4782 4814 1.804748 GACTTTCCTTAAGCACCGGTG 59.195 52.381 30.66 30.66 37.37 4.94
4797 4829 3.813166 CACCGGTGCTTATTTGTATAGGG 59.187 47.826 24.02 0.00 0.00 3.53
4798 4830 3.457012 ACCGGTGCTTATTTGTATAGGGT 59.543 43.478 6.12 0.00 0.00 4.34
4799 4831 4.655186 ACCGGTGCTTATTTGTATAGGGTA 59.345 41.667 6.12 0.00 0.00 3.69
4800 4832 5.221581 ACCGGTGCTTATTTGTATAGGGTAG 60.222 44.000 6.12 0.00 0.00 3.18
4801 4833 5.011329 CCGGTGCTTATTTGTATAGGGTAGA 59.989 44.000 0.00 0.00 0.00 2.59
4802 4834 5.924825 CGGTGCTTATTTGTATAGGGTAGAC 59.075 44.000 0.00 0.00 0.00 2.59
4803 4835 5.924825 GGTGCTTATTTGTATAGGGTAGACG 59.075 44.000 0.00 0.00 0.00 4.18
4804 4836 5.404667 GTGCTTATTTGTATAGGGTAGACGC 59.595 44.000 0.00 0.00 0.00 5.19
4805 4837 5.303589 TGCTTATTTGTATAGGGTAGACGCT 59.696 40.000 4.53 4.53 42.15 5.07
4806 4838 6.183360 TGCTTATTTGTATAGGGTAGACGCTT 60.183 38.462 4.43 0.00 39.91 4.68
4807 4839 7.014518 TGCTTATTTGTATAGGGTAGACGCTTA 59.985 37.037 4.43 0.00 39.91 3.09
4808 4840 7.869429 GCTTATTTGTATAGGGTAGACGCTTAA 59.131 37.037 4.43 0.00 39.91 1.85
4809 4841 9.189723 CTTATTTGTATAGGGTAGACGCTTAAC 57.810 37.037 4.43 4.75 39.91 2.01
4810 4842 6.780457 TTTGTATAGGGTAGACGCTTAACT 57.220 37.500 4.43 0.00 39.91 2.24
4811 4843 7.880160 TTTGTATAGGGTAGACGCTTAACTA 57.120 36.000 4.43 0.00 39.91 2.24
4812 4844 7.880160 TTGTATAGGGTAGACGCTTAACTAA 57.120 36.000 4.43 0.47 39.91 2.24
4813 4845 7.502120 TGTATAGGGTAGACGCTTAACTAAG 57.498 40.000 4.43 0.00 39.91 2.18
4825 4857 4.705337 CTTAACTAAGCGTCTCTCCTGT 57.295 45.455 0.00 0.00 0.00 4.00
4826 4858 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
4827 4859 6.380095 CTTAACTAAGCGTCTCTCCTGTAT 57.620 41.667 0.00 0.00 0.00 2.29
4828 4860 7.493743 CTTAACTAAGCGTCTCTCCTGTATA 57.506 40.000 0.00 0.00 0.00 1.47
4829 4861 7.870509 TTAACTAAGCGTCTCTCCTGTATAA 57.129 36.000 0.00 0.00 0.00 0.98
4830 4862 6.770746 AACTAAGCGTCTCTCCTGTATAAA 57.229 37.500 0.00 0.00 0.00 1.40
4831 4863 6.963083 ACTAAGCGTCTCTCCTGTATAAAT 57.037 37.500 0.00 0.00 0.00 1.40
4832 4864 8.461249 AACTAAGCGTCTCTCCTGTATAAATA 57.539 34.615 0.00 0.00 0.00 1.40
4833 4865 8.101654 ACTAAGCGTCTCTCCTGTATAAATAG 57.898 38.462 0.00 0.00 0.00 1.73
4834 4866 5.968528 AGCGTCTCTCCTGTATAAATAGG 57.031 43.478 0.00 0.00 35.36 2.57
4835 4867 4.218852 AGCGTCTCTCCTGTATAAATAGGC 59.781 45.833 0.00 0.00 34.08 3.93
4836 4868 4.022242 GCGTCTCTCCTGTATAAATAGGCA 60.022 45.833 0.00 0.00 34.08 4.75
4837 4869 5.462405 CGTCTCTCCTGTATAAATAGGCAC 58.538 45.833 0.00 0.00 34.08 5.01
4838 4870 5.565045 CGTCTCTCCTGTATAAATAGGCACC 60.565 48.000 0.00 0.00 34.08 5.01
4839 4871 4.523173 TCTCTCCTGTATAAATAGGCACCG 59.477 45.833 0.00 0.00 34.08 4.94
4840 4872 3.576982 TCTCCTGTATAAATAGGCACCGG 59.423 47.826 0.00 0.00 34.08 5.28
4841 4873 3.311091 TCCTGTATAAATAGGCACCGGT 58.689 45.455 0.00 0.00 34.08 5.28
4842 4874 3.070446 TCCTGTATAAATAGGCACCGGTG 59.930 47.826 30.66 30.66 34.08 4.94
4854 4886 2.619013 CACCGGTGCTTCAGAAAATC 57.381 50.000 24.02 0.00 0.00 2.17
4855 4887 2.154462 CACCGGTGCTTCAGAAAATCT 58.846 47.619 24.02 0.00 0.00 2.40
4856 4888 2.160417 CACCGGTGCTTCAGAAAATCTC 59.840 50.000 24.02 0.00 0.00 2.75
4857 4889 1.394917 CCGGTGCTTCAGAAAATCTCG 59.605 52.381 0.00 0.00 0.00 4.04
4858 4890 1.394917 CGGTGCTTCAGAAAATCTCGG 59.605 52.381 0.00 0.00 0.00 4.63
4859 4891 2.427506 GGTGCTTCAGAAAATCTCGGT 58.572 47.619 0.00 0.00 0.00 4.69
4860 4892 2.814336 GGTGCTTCAGAAAATCTCGGTT 59.186 45.455 0.00 0.00 0.00 4.44
4861 4893 3.253432 GGTGCTTCAGAAAATCTCGGTTT 59.747 43.478 0.00 0.00 0.00 3.27
4862 4894 4.454504 GGTGCTTCAGAAAATCTCGGTTTA 59.545 41.667 0.00 0.00 0.00 2.01
4863 4895 5.123979 GGTGCTTCAGAAAATCTCGGTTTAT 59.876 40.000 0.00 0.00 0.00 1.40
4864 4896 6.349363 GGTGCTTCAGAAAATCTCGGTTTATT 60.349 38.462 0.00 0.00 0.00 1.40
4865 4897 7.084486 GTGCTTCAGAAAATCTCGGTTTATTT 58.916 34.615 0.00 0.00 0.00 1.40
4866 4898 7.595130 GTGCTTCAGAAAATCTCGGTTTATTTT 59.405 33.333 0.00 0.00 37.85 1.82
4867 4899 8.141268 TGCTTCAGAAAATCTCGGTTTATTTTT 58.859 29.630 0.00 0.00 35.87 1.94
4868 4900 8.639428 GCTTCAGAAAATCTCGGTTTATTTTTC 58.361 33.333 0.00 0.00 35.87 2.29
4869 4901 9.899226 CTTCAGAAAATCTCGGTTTATTTTTCT 57.101 29.630 0.00 0.00 43.65 2.52
4876 4908 9.687210 AAATCTCGGTTTATTTTTCTAAACACC 57.313 29.630 8.47 0.00 41.36 4.16
4877 4909 7.205737 TCTCGGTTTATTTTTCTAAACACCC 57.794 36.000 8.47 0.00 41.36 4.61
4878 4910 6.207221 TCTCGGTTTATTTTTCTAAACACCCC 59.793 38.462 8.47 0.00 41.36 4.95
4879 4911 6.069994 TCGGTTTATTTTTCTAAACACCCCT 58.930 36.000 8.47 0.00 41.36 4.79
4880 4912 6.207221 TCGGTTTATTTTTCTAAACACCCCTC 59.793 38.462 8.47 0.00 41.36 4.30
4881 4913 6.208007 CGGTTTATTTTTCTAAACACCCCTCT 59.792 38.462 8.47 0.00 41.36 3.69
4882 4914 7.391275 CGGTTTATTTTTCTAAACACCCCTCTA 59.609 37.037 8.47 0.00 41.36 2.43
4883 4915 9.081204 GGTTTATTTTTCTAAACACCCCTCTAA 57.919 33.333 8.47 0.00 41.36 2.10
4885 4917 6.835819 ATTTTTCTAAACACCCCTCTAAGC 57.164 37.500 0.00 0.00 0.00 3.09
4886 4918 4.986054 TTTCTAAACACCCCTCTAAGCA 57.014 40.909 0.00 0.00 0.00 3.91
4887 4919 5.514500 TTTCTAAACACCCCTCTAAGCAT 57.486 39.130 0.00 0.00 0.00 3.79
4888 4920 4.755266 TCTAAACACCCCTCTAAGCATC 57.245 45.455 0.00 0.00 0.00 3.91
4889 4921 4.362677 TCTAAACACCCCTCTAAGCATCT 58.637 43.478 0.00 0.00 0.00 2.90
4890 4922 3.636153 AAACACCCCTCTAAGCATCTC 57.364 47.619 0.00 0.00 0.00 2.75
4891 4923 1.501582 ACACCCCTCTAAGCATCTCC 58.498 55.000 0.00 0.00 0.00 3.71
4892 4924 0.761802 CACCCCTCTAAGCATCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
4893 4925 0.343372 ACCCCTCTAAGCATCTCCCA 59.657 55.000 0.00 0.00 0.00 4.37
4894 4926 1.061033 ACCCCTCTAAGCATCTCCCAT 60.061 52.381 0.00 0.00 0.00 4.00
4895 4927 2.061061 CCCCTCTAAGCATCTCCCATT 58.939 52.381 0.00 0.00 0.00 3.16
4896 4928 2.224719 CCCCTCTAAGCATCTCCCATTG 60.225 54.545 0.00 0.00 0.00 2.82
4897 4929 2.441001 CCCTCTAAGCATCTCCCATTGT 59.559 50.000 0.00 0.00 0.00 2.71
4898 4930 3.648067 CCCTCTAAGCATCTCCCATTGTA 59.352 47.826 0.00 0.00 0.00 2.41
4899 4931 4.503991 CCCTCTAAGCATCTCCCATTGTAC 60.504 50.000 0.00 0.00 0.00 2.90
4900 4932 4.101585 CCTCTAAGCATCTCCCATTGTACA 59.898 45.833 0.00 0.00 0.00 2.90
4901 4933 5.282055 TCTAAGCATCTCCCATTGTACAG 57.718 43.478 0.00 0.00 0.00 2.74
4902 4934 3.287867 AAGCATCTCCCATTGTACAGG 57.712 47.619 0.00 0.00 0.00 4.00
4903 4935 1.492176 AGCATCTCCCATTGTACAGGG 59.508 52.381 13.01 13.01 46.90 4.45
4904 4936 1.972872 CATCTCCCATTGTACAGGGC 58.027 55.000 14.16 0.00 45.07 5.19
4905 4937 0.846693 ATCTCCCATTGTACAGGGCC 59.153 55.000 14.16 0.00 45.07 5.80
4906 4938 0.253160 TCTCCCATTGTACAGGGCCT 60.253 55.000 14.16 0.00 45.07 5.19
4907 4939 0.625849 CTCCCATTGTACAGGGCCTT 59.374 55.000 14.16 0.00 45.07 4.35
4908 4940 1.843851 CTCCCATTGTACAGGGCCTTA 59.156 52.381 14.16 0.00 45.07 2.69
4909 4941 1.562475 TCCCATTGTACAGGGCCTTAC 59.438 52.381 14.16 10.92 45.07 2.34
4910 4942 1.283613 CCCATTGTACAGGGCCTTACA 59.716 52.381 18.56 18.56 38.44 2.41
4911 4943 2.091885 CCCATTGTACAGGGCCTTACAT 60.092 50.000 21.31 12.96 38.44 2.29
4912 4944 2.951642 CCATTGTACAGGGCCTTACATG 59.048 50.000 21.31 19.46 0.00 3.21
4913 4945 3.371487 CCATTGTACAGGGCCTTACATGA 60.371 47.826 21.31 12.75 0.00 3.07
4914 4946 3.343941 TTGTACAGGGCCTTACATGAC 57.656 47.619 21.31 8.60 0.00 3.06
4915 4947 2.546899 TGTACAGGGCCTTACATGACT 58.453 47.619 18.56 0.00 0.00 3.41
4916 4948 2.236146 TGTACAGGGCCTTACATGACTG 59.764 50.000 18.56 0.59 0.00 3.51
4917 4949 1.656587 ACAGGGCCTTACATGACTGA 58.343 50.000 1.32 0.00 0.00 3.41
4918 4950 1.985159 ACAGGGCCTTACATGACTGAA 59.015 47.619 1.32 0.00 0.00 3.02
4919 4951 2.375174 ACAGGGCCTTACATGACTGAAA 59.625 45.455 1.32 0.00 0.00 2.69
4920 4952 3.010584 ACAGGGCCTTACATGACTGAAAT 59.989 43.478 1.32 0.00 0.00 2.17
4921 4953 4.019174 CAGGGCCTTACATGACTGAAATT 58.981 43.478 1.32 0.00 0.00 1.82
4922 4954 4.019174 AGGGCCTTACATGACTGAAATTG 58.981 43.478 0.00 0.00 0.00 2.32
4923 4955 3.429410 GGGCCTTACATGACTGAAATTGC 60.429 47.826 0.84 0.00 0.00 3.56
4924 4956 3.429410 GGCCTTACATGACTGAAATTGCC 60.429 47.826 0.00 0.00 0.00 4.52
4925 4957 3.193267 GCCTTACATGACTGAAATTGCCA 59.807 43.478 0.00 0.00 0.00 4.92
4926 4958 4.142093 GCCTTACATGACTGAAATTGCCAT 60.142 41.667 0.00 0.00 0.00 4.40
4927 4959 5.585390 CCTTACATGACTGAAATTGCCATC 58.415 41.667 0.00 0.00 0.00 3.51
4928 4960 3.770263 ACATGACTGAAATTGCCATCG 57.230 42.857 0.00 0.00 0.00 3.84
4929 4961 2.159338 ACATGACTGAAATTGCCATCGC 60.159 45.455 0.00 0.00 0.00 4.58
4930 4962 1.532523 TGACTGAAATTGCCATCGCA 58.467 45.000 0.00 0.00 45.49 5.10
4941 4973 3.162202 TGCCATCGCAAAACATAATGG 57.838 42.857 0.00 0.00 43.74 3.16
4943 4975 2.472816 CCATCGCAAAACATAATGGCC 58.527 47.619 0.00 0.00 31.24 5.36
4944 4976 2.101249 CCATCGCAAAACATAATGGCCT 59.899 45.455 3.32 0.00 31.24 5.19
4945 4977 2.937469 TCGCAAAACATAATGGCCTG 57.063 45.000 3.32 0.00 0.00 4.85
4946 4978 2.441410 TCGCAAAACATAATGGCCTGA 58.559 42.857 3.32 0.00 0.00 3.86
4947 4979 2.423185 TCGCAAAACATAATGGCCTGAG 59.577 45.455 3.32 0.00 0.00 3.35
4948 4980 2.164219 CGCAAAACATAATGGCCTGAGT 59.836 45.455 3.32 0.00 0.00 3.41
4949 4981 3.514645 GCAAAACATAATGGCCTGAGTG 58.485 45.455 3.32 0.33 0.00 3.51
4950 4982 3.514645 CAAAACATAATGGCCTGAGTGC 58.485 45.455 3.32 0.00 0.00 4.40
4967 4999 1.948104 TGCCACGCACCTAATATGTC 58.052 50.000 0.00 0.00 31.71 3.06
4968 5000 1.208293 TGCCACGCACCTAATATGTCA 59.792 47.619 0.00 0.00 31.71 3.58
4969 5001 1.597663 GCCACGCACCTAATATGTCAC 59.402 52.381 0.00 0.00 0.00 3.67
4970 5002 2.899976 CCACGCACCTAATATGTCACA 58.100 47.619 0.00 0.00 0.00 3.58
4971 5003 2.607635 CCACGCACCTAATATGTCACAC 59.392 50.000 0.00 0.00 0.00 3.82
4972 5004 3.521560 CACGCACCTAATATGTCACACT 58.478 45.455 0.00 0.00 0.00 3.55
4973 5005 3.932710 CACGCACCTAATATGTCACACTT 59.067 43.478 0.00 0.00 0.00 3.16
4974 5006 5.106442 CACGCACCTAATATGTCACACTTA 58.894 41.667 0.00 0.00 0.00 2.24
4975 5007 5.753438 CACGCACCTAATATGTCACACTTAT 59.247 40.000 0.00 0.00 0.00 1.73
4976 5008 5.983720 ACGCACCTAATATGTCACACTTATC 59.016 40.000 0.00 0.00 0.00 1.75
4977 5009 5.983118 CGCACCTAATATGTCACACTTATCA 59.017 40.000 0.00 0.00 0.00 2.15
4978 5010 6.646653 CGCACCTAATATGTCACACTTATCAT 59.353 38.462 0.00 0.00 0.00 2.45
4979 5011 7.171508 CGCACCTAATATGTCACACTTATCATT 59.828 37.037 0.00 0.00 0.00 2.57
4980 5012 8.840321 GCACCTAATATGTCACACTTATCATTT 58.160 33.333 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.728845 TCTATCCCAGTTGCGATTTAGC 58.271 45.455 0.00 0.00 37.71 3.09
1 2 3.743396 GCTCTATCCCAGTTGCGATTTAG 59.257 47.826 0.00 0.00 0.00 1.85
2 3 3.388024 AGCTCTATCCCAGTTGCGATTTA 59.612 43.478 0.00 0.00 32.72 1.40
3 4 2.171448 AGCTCTATCCCAGTTGCGATTT 59.829 45.455 0.00 0.00 32.72 2.17
4 5 1.765314 AGCTCTATCCCAGTTGCGATT 59.235 47.619 0.00 0.00 32.72 3.34
5 6 1.418334 AGCTCTATCCCAGTTGCGAT 58.582 50.000 0.00 0.00 32.72 4.58
6 7 1.957177 CTAGCTCTATCCCAGTTGCGA 59.043 52.381 0.00 0.00 32.72 5.10
7 8 1.604185 GCTAGCTCTATCCCAGTTGCG 60.604 57.143 7.70 0.00 32.72 4.85
8 9 1.604185 CGCTAGCTCTATCCCAGTTGC 60.604 57.143 13.93 0.00 0.00 4.17
9 10 1.000283 CCGCTAGCTCTATCCCAGTTG 60.000 57.143 13.93 0.00 0.00 3.16
10 11 1.333177 CCGCTAGCTCTATCCCAGTT 58.667 55.000 13.93 0.00 0.00 3.16
11 12 1.182385 GCCGCTAGCTCTATCCCAGT 61.182 60.000 13.93 0.00 38.99 4.00
12 13 1.181741 TGCCGCTAGCTCTATCCCAG 61.182 60.000 13.93 0.00 44.23 4.45
13 14 0.759060 TTGCCGCTAGCTCTATCCCA 60.759 55.000 13.93 0.00 44.23 4.37
14 15 0.393077 TTTGCCGCTAGCTCTATCCC 59.607 55.000 13.93 0.00 44.23 3.85
15 16 2.240493 TTTTGCCGCTAGCTCTATCC 57.760 50.000 13.93 0.00 44.23 2.59
16 17 2.481952 CCATTTTGCCGCTAGCTCTATC 59.518 50.000 13.93 0.00 44.23 2.08
17 18 2.498167 CCATTTTGCCGCTAGCTCTAT 58.502 47.619 13.93 0.00 44.23 1.98
18 19 1.475034 CCCATTTTGCCGCTAGCTCTA 60.475 52.381 13.93 0.00 44.23 2.43
19 20 0.749454 CCCATTTTGCCGCTAGCTCT 60.749 55.000 13.93 0.00 44.23 4.09
20 21 1.728490 CCCCATTTTGCCGCTAGCTC 61.728 60.000 13.93 5.02 44.23 4.09
21 22 1.754234 CCCCATTTTGCCGCTAGCT 60.754 57.895 13.93 0.00 44.23 3.32
22 23 2.785425 CCCCCATTTTGCCGCTAGC 61.785 63.158 4.06 4.06 44.14 3.42
23 24 1.077068 TCCCCCATTTTGCCGCTAG 60.077 57.895 0.00 0.00 0.00 3.42
24 25 1.077068 CTCCCCCATTTTGCCGCTA 60.077 57.895 0.00 0.00 0.00 4.26
25 26 2.362889 CTCCCCCATTTTGCCGCT 60.363 61.111 0.00 0.00 0.00 5.52
26 27 3.460868 CCTCCCCCATTTTGCCGC 61.461 66.667 0.00 0.00 0.00 6.53
27 28 1.754234 CTCCTCCCCCATTTTGCCG 60.754 63.158 0.00 0.00 0.00 5.69
28 29 1.381735 CCTCCTCCCCCATTTTGCC 60.382 63.158 0.00 0.00 0.00 4.52
29 30 1.381735 CCCTCCTCCCCCATTTTGC 60.382 63.158 0.00 0.00 0.00 3.68
30 31 1.311059 CCCCTCCTCCCCCATTTTG 59.689 63.158 0.00 0.00 0.00 2.44
31 32 1.941281 CCCCCTCCTCCCCCATTTT 60.941 63.158 0.00 0.00 0.00 1.82
32 33 2.287975 CCCCCTCCTCCCCCATTT 60.288 66.667 0.00 0.00 0.00 2.32
33 34 3.309509 TCCCCCTCCTCCCCCATT 61.310 66.667 0.00 0.00 0.00 3.16
34 35 3.795924 CTCCCCCTCCTCCCCCAT 61.796 72.222 0.00 0.00 0.00 4.00
38 39 4.825679 CACCCTCCCCCTCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
43 44 4.741239 TCTGGCACCCTCCCCCTC 62.741 72.222 0.00 0.00 0.00 4.30
44 45 3.603330 AATCTGGCACCCTCCCCCT 62.603 63.158 0.00 0.00 0.00 4.79
45 46 2.626467 AAATCTGGCACCCTCCCCC 61.626 63.158 0.00 0.00 0.00 5.40
46 47 1.380380 CAAATCTGGCACCCTCCCC 60.380 63.158 0.00 0.00 0.00 4.81
47 48 1.380380 CCAAATCTGGCACCCTCCC 60.380 63.158 0.00 0.00 35.39 4.30
48 49 4.344237 CCAAATCTGGCACCCTCC 57.656 61.111 0.00 0.00 35.39 4.30
57 58 1.888018 CCTGCACCAGCCAAATCTG 59.112 57.895 0.00 0.00 41.13 2.90
58 59 1.980772 GCCTGCACCAGCCAAATCT 60.981 57.895 0.00 0.00 41.13 2.40
59 60 2.575461 GCCTGCACCAGCCAAATC 59.425 61.111 0.00 0.00 41.13 2.17
60 61 2.999063 GGCCTGCACCAGCCAAAT 60.999 61.111 11.83 0.00 41.13 2.32
65 66 1.103398 ATATTTCGGCCTGCACCAGC 61.103 55.000 0.00 0.00 42.57 4.85
66 67 0.664761 CATATTTCGGCCTGCACCAG 59.335 55.000 0.00 0.00 0.00 4.00
67 68 0.254462 TCATATTTCGGCCTGCACCA 59.746 50.000 0.00 0.00 0.00 4.17
68 69 1.388547 TTCATATTTCGGCCTGCACC 58.611 50.000 0.00 0.00 0.00 5.01
69 70 3.715628 ATTTCATATTTCGGCCTGCAC 57.284 42.857 0.00 0.00 0.00 4.57
70 71 5.843673 TTTATTTCATATTTCGGCCTGCA 57.156 34.783 0.00 0.00 0.00 4.41
92 93 6.693978 GCAAAATAACCGCCGATATACTTTTT 59.306 34.615 0.00 0.00 0.00 1.94
93 94 6.203647 GCAAAATAACCGCCGATATACTTTT 58.796 36.000 0.00 0.00 0.00 2.27
94 95 5.559417 CGCAAAATAACCGCCGATATACTTT 60.559 40.000 0.00 0.00 0.00 2.66
95 96 4.084223 CGCAAAATAACCGCCGATATACTT 60.084 41.667 0.00 0.00 0.00 2.24
96 97 3.430895 CGCAAAATAACCGCCGATATACT 59.569 43.478 0.00 0.00 0.00 2.12
97 98 3.423907 CCGCAAAATAACCGCCGATATAC 60.424 47.826 0.00 0.00 0.00 1.47
98 99 2.737783 CCGCAAAATAACCGCCGATATA 59.262 45.455 0.00 0.00 0.00 0.86
99 100 1.533731 CCGCAAAATAACCGCCGATAT 59.466 47.619 0.00 0.00 0.00 1.63
100 101 0.938713 CCGCAAAATAACCGCCGATA 59.061 50.000 0.00 0.00 0.00 2.92
101 102 1.720694 CCCGCAAAATAACCGCCGAT 61.721 55.000 0.00 0.00 0.00 4.18
102 103 2.400158 CCCGCAAAATAACCGCCGA 61.400 57.895 0.00 0.00 0.00 5.54
103 104 2.101380 CCCGCAAAATAACCGCCG 59.899 61.111 0.00 0.00 0.00 6.46
104 105 2.492560 CCCCGCAAAATAACCGCC 59.507 61.111 0.00 0.00 0.00 6.13
105 106 2.202690 GCCCCGCAAAATAACCGC 60.203 61.111 0.00 0.00 0.00 5.68
106 107 2.492560 GGCCCCGCAAAATAACCG 59.507 61.111 0.00 0.00 0.00 4.44
107 108 2.492560 CGGCCCCGCAAAATAACC 59.507 61.111 0.00 0.00 0.00 2.85
108 109 1.388837 ATCCGGCCCCGCAAAATAAC 61.389 55.000 0.00 0.00 38.24 1.89
109 110 0.183014 TATCCGGCCCCGCAAAATAA 59.817 50.000 0.00 0.00 38.24 1.40
110 111 0.402504 ATATCCGGCCCCGCAAAATA 59.597 50.000 0.00 0.00 38.24 1.40
111 112 0.402504 TATATCCGGCCCCGCAAAAT 59.597 50.000 0.00 0.00 38.24 1.82
112 113 0.183014 TTATATCCGGCCCCGCAAAA 59.817 50.000 0.00 0.00 38.24 2.44
113 114 0.535553 GTTATATCCGGCCCCGCAAA 60.536 55.000 0.00 0.00 38.24 3.68
114 115 1.071814 GTTATATCCGGCCCCGCAA 59.928 57.895 0.00 0.00 38.24 4.85
115 116 2.745037 GTTATATCCGGCCCCGCA 59.255 61.111 0.00 0.00 38.24 5.69
116 117 2.433664 CGTTATATCCGGCCCCGC 60.434 66.667 0.00 0.00 38.24 6.13
117 118 2.433664 GCGTTATATCCGGCCCCG 60.434 66.667 0.00 0.00 39.44 5.73
118 119 0.538118 TATGCGTTATATCCGGCCCC 59.462 55.000 0.00 0.00 0.00 5.80
119 120 2.159014 TCATATGCGTTATATCCGGCCC 60.159 50.000 0.00 0.00 29.37 5.80
120 121 2.864343 GTCATATGCGTTATATCCGGCC 59.136 50.000 0.00 0.00 29.37 6.13
121 122 3.551890 CAGTCATATGCGTTATATCCGGC 59.448 47.826 0.00 0.00 29.37 6.13
122 123 4.112634 CCAGTCATATGCGTTATATCCGG 58.887 47.826 0.00 0.00 29.37 5.14
123 124 4.562789 CACCAGTCATATGCGTTATATCCG 59.437 45.833 0.00 0.00 29.37 4.18
124 125 5.479306 ACACCAGTCATATGCGTTATATCC 58.521 41.667 0.00 0.00 29.37 2.59
125 126 6.633668 GACACCAGTCATATGCGTTATATC 57.366 41.667 0.00 0.00 44.34 1.63
139 140 2.128035 CAAGACAACGAGACACCAGTC 58.872 52.381 0.00 0.00 45.31 3.51
140 141 1.806623 GCAAGACAACGAGACACCAGT 60.807 52.381 0.00 0.00 0.00 4.00
141 142 0.861837 GCAAGACAACGAGACACCAG 59.138 55.000 0.00 0.00 0.00 4.00
142 143 0.531974 GGCAAGACAACGAGACACCA 60.532 55.000 0.00 0.00 0.00 4.17
143 144 0.249911 AGGCAAGACAACGAGACACC 60.250 55.000 0.00 0.00 0.00 4.16
144 145 1.583054 AAGGCAAGACAACGAGACAC 58.417 50.000 0.00 0.00 0.00 3.67
145 146 2.325583 AAAGGCAAGACAACGAGACA 57.674 45.000 0.00 0.00 0.00 3.41
146 147 3.692791 AAAAAGGCAAGACAACGAGAC 57.307 42.857 0.00 0.00 0.00 3.36
169 170 0.461961 AAAGAGAGGGGATTCGAGCG 59.538 55.000 0.00 0.00 0.00 5.03
213 214 2.820037 GTAGCAGCAAGGACGGCC 60.820 66.667 0.00 0.00 0.00 6.13
216 217 2.125106 GGGGTAGCAGCAAGGACG 60.125 66.667 0.00 0.00 0.00 4.79
228 229 1.144503 GTGGAGGAGATACTCGGGGTA 59.855 57.143 0.00 0.00 38.39 3.69
232 233 1.797211 GCGGTGGAGGAGATACTCGG 61.797 65.000 0.00 0.00 38.39 4.63
238 239 2.765807 CCTGGCGGTGGAGGAGAT 60.766 66.667 0.00 0.00 0.00 2.75
263 264 2.989253 TCGCGACTGAAGAGGGCA 60.989 61.111 3.71 0.00 0.00 5.36
318 319 1.300233 CGAATAGCGGTGGAGGAGC 60.300 63.158 0.00 0.00 36.03 4.70
344 345 3.998672 GTCACAACGGGAGGCGGA 61.999 66.667 0.00 0.00 0.00 5.54
378 379 2.990479 GGTCAATGGAGGAGCCGT 59.010 61.111 0.00 0.00 40.66 5.68
383 384 4.467084 GCGGCGGTCAATGGAGGA 62.467 66.667 9.78 0.00 0.00 3.71
471 472 2.753043 GCGACGGTGGAGGTCCTA 60.753 66.667 0.00 0.00 36.82 2.94
489 490 0.818296 GCGACTAGAGGAGCAAGGAA 59.182 55.000 0.00 0.00 0.00 3.36
490 491 0.323451 TGCGACTAGAGGAGCAAGGA 60.323 55.000 0.00 0.00 36.60 3.36
564 567 2.123812 ATCCCCTCGGAGGTCGAC 60.124 66.667 22.07 7.13 43.12 4.20
567 570 2.764128 TGCATCCCCTCGGAGGTC 60.764 66.667 22.07 6.87 43.12 3.85
599 602 7.100409 GGTCTATCTAATTTGTATCTGCTCCC 58.900 42.308 0.00 0.00 0.00 4.30
604 607 7.063898 CGGCATGGTCTATCTAATTTGTATCTG 59.936 40.741 0.00 0.00 0.00 2.90
605 608 7.039011 TCGGCATGGTCTATCTAATTTGTATCT 60.039 37.037 0.00 0.00 0.00 1.98
619 622 0.546122 AGGCAATTCGGCATGGTCTA 59.454 50.000 0.00 0.00 44.47 2.59
690 693 2.905807 GACGGAGGGACGGCTATCG 61.906 68.421 0.00 0.00 45.88 2.92
873 876 1.337541 GCGAGTTTCTAGGGTTTCGGT 60.338 52.381 0.00 0.00 0.00 4.69
1675 1678 8.790718 CAGGGAAAATTCCTATCATAGACATTG 58.209 37.037 11.75 0.00 46.72 2.82
1696 1699 5.248248 TCACAGACAAATTCACTATCAGGGA 59.752 40.000 0.00 0.00 0.00 4.20
1750 1753 0.901124 AGGATGCTCTTCTGACGCTT 59.099 50.000 0.00 0.00 0.00 4.68
2110 2113 1.730064 CACGCACAATTAACGCCTAGT 59.270 47.619 0.00 0.00 0.00 2.57
2217 2220 2.187493 CGCGACTAGGCTCTAGGCA 61.187 63.158 0.00 0.00 44.01 4.75
2312 2320 2.356069 GTGCATAAAAGGCCTGCTCTAC 59.644 50.000 5.69 0.00 36.84 2.59
2548 2556 2.327081 AACGTCTACACAGCTACACG 57.673 50.000 0.00 0.00 0.00 4.49
2570 2578 3.702048 GGCGTAGGAGGTGGCACA 61.702 66.667 20.82 0.00 0.00 4.57
2572 2580 3.075005 GAGGCGTAGGAGGTGGCA 61.075 66.667 0.00 0.00 0.00 4.92
2659 2667 5.357878 TGCCTGAATGTTTCATGGAATACTC 59.642 40.000 0.00 0.00 39.30 2.59
3030 3040 5.598830 TGTAACCATTTTAAAAGTGGCCAGA 59.401 36.000 5.11 10.36 36.47 3.86
3110 3120 2.953466 TCGGGATTTTCTCGACGAAT 57.047 45.000 0.00 0.00 42.40 3.34
3272 3282 2.863853 CGTGTCGCATCCATCGCAG 61.864 63.158 0.00 0.00 0.00 5.18
3424 3440 0.038599 ATCACCATGCAGGCTGTCAA 59.961 50.000 17.16 2.62 43.14 3.18
3471 3487 6.214412 ACTTCAGGTGGTTCTATCTTCTTGAT 59.786 38.462 0.00 0.00 39.11 2.57
3545 3561 0.038159 CGTTCTCTTCCTCCACGCTT 60.038 55.000 0.00 0.00 0.00 4.68
3731 3747 1.078848 GCAGTACCAGCACTCCAGG 60.079 63.158 3.23 0.00 0.00 4.45
4250 4269 8.365210 CAAGTGATGTTTCGTGCAAATAATAAC 58.635 33.333 0.00 0.00 0.00 1.89
4438 4462 7.628769 AAGTTTGTCCATGCAAAAAGAAAAT 57.371 28.000 0.00 0.00 39.65 1.82
4518 4543 7.814264 ATAATCCTAAAGGTGCATTCTTCAG 57.186 36.000 5.86 1.81 36.34 3.02
4519 4544 8.055181 AGAATAATCCTAAAGGTGCATTCTTCA 58.945 33.333 5.86 0.00 35.44 3.02
4536 4561 5.050091 CGTGTGGCACTTATCAGAATAATCC 60.050 44.000 19.83 0.00 31.34 3.01
4537 4562 5.523916 ACGTGTGGCACTTATCAGAATAATC 59.476 40.000 19.83 0.00 31.34 1.75
4594 4624 6.531594 TCTCGCATCACTAAACTTGTCATAAG 59.468 38.462 0.00 0.00 0.00 1.73
4601 4631 5.120674 TGTCATTCTCGCATCACTAAACTTG 59.879 40.000 0.00 0.00 0.00 3.16
4604 4634 5.120830 AGTTGTCATTCTCGCATCACTAAAC 59.879 40.000 0.00 0.00 0.00 2.01
4608 4638 3.325293 AGTTGTCATTCTCGCATCACT 57.675 42.857 0.00 0.00 0.00 3.41
4635 4665 2.053627 CGAAAGTTGTCATGCTTTGGC 58.946 47.619 7.40 0.00 35.35 4.52
4636 4666 3.044986 CACGAAAGTTGTCATGCTTTGG 58.955 45.455 7.40 8.46 46.40 3.28
4637 4667 2.468777 GCACGAAAGTTGTCATGCTTTG 59.531 45.455 7.40 4.23 46.40 2.77
4639 4669 1.949525 AGCACGAAAGTTGTCATGCTT 59.050 42.857 0.00 0.00 46.40 3.91
4640 4670 1.597742 AGCACGAAAGTTGTCATGCT 58.402 45.000 0.00 3.76 46.40 3.79
4641 4671 2.286950 TGAAGCACGAAAGTTGTCATGC 60.287 45.455 0.00 0.00 46.40 4.06
4642 4672 3.607422 TGAAGCACGAAAGTTGTCATG 57.393 42.857 0.00 0.00 46.40 3.07
4643 4673 4.836125 ATTGAAGCACGAAAGTTGTCAT 57.164 36.364 0.00 0.00 46.40 3.06
4644 4674 4.630894 AATTGAAGCACGAAAGTTGTCA 57.369 36.364 0.00 0.00 46.40 3.58
4645 4675 7.623268 AATAAATTGAAGCACGAAAGTTGTC 57.377 32.000 0.00 0.00 46.40 3.18
4685 4715 3.696281 TGACAAATTGCAGTGACACAG 57.304 42.857 8.59 0.12 0.00 3.66
4696 4728 4.463891 ACAAGGCCTAAGGATGACAAATTG 59.536 41.667 5.16 0.00 0.00 2.32
4712 4744 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
4713 4745 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
4714 4746 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
4715 4747 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
4716 4748 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
4717 4749 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
4718 4750 2.421529 CCCTAAGCACCTCCCATTGTAC 60.422 54.545 0.00 0.00 0.00 2.90
4719 4751 1.843851 CCCTAAGCACCTCCCATTGTA 59.156 52.381 0.00 0.00 0.00 2.41
4720 4752 0.625849 CCCTAAGCACCTCCCATTGT 59.374 55.000 0.00 0.00 0.00 2.71
4721 4753 0.918983 TCCCTAAGCACCTCCCATTG 59.081 55.000 0.00 0.00 0.00 2.82
4722 4754 1.216990 CTCCCTAAGCACCTCCCATT 58.783 55.000 0.00 0.00 0.00 3.16
4723 4755 0.695803 CCTCCCTAAGCACCTCCCAT 60.696 60.000 0.00 0.00 0.00 4.00
4724 4756 1.306997 CCTCCCTAAGCACCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
4725 4757 1.307084 ACCTCCCTAAGCACCTCCC 60.307 63.158 0.00 0.00 0.00 4.30
4726 4758 1.908483 CACCTCCCTAAGCACCTCC 59.092 63.158 0.00 0.00 0.00 4.30
4727 4759 1.222113 GCACCTCCCTAAGCACCTC 59.778 63.158 0.00 0.00 0.00 3.85
4728 4760 0.842467 AAGCACCTCCCTAAGCACCT 60.842 55.000 0.00 0.00 0.00 4.00
4729 4761 0.909623 TAAGCACCTCCCTAAGCACC 59.090 55.000 0.00 0.00 0.00 5.01
4730 4762 1.831736 TCTAAGCACCTCCCTAAGCAC 59.168 52.381 0.00 0.00 0.00 4.40
4731 4763 2.111384 CTCTAAGCACCTCCCTAAGCA 58.889 52.381 0.00 0.00 0.00 3.91
4732 4764 2.389715 TCTCTAAGCACCTCCCTAAGC 58.610 52.381 0.00 0.00 0.00 3.09
4733 4765 5.622346 ATTTCTCTAAGCACCTCCCTAAG 57.378 43.478 0.00 0.00 0.00 2.18
4734 4766 7.336396 GTTTATTTCTCTAAGCACCTCCCTAA 58.664 38.462 0.00 0.00 0.00 2.69
4735 4767 6.126854 GGTTTATTTCTCTAAGCACCTCCCTA 60.127 42.308 0.00 0.00 0.00 3.53
4736 4768 5.339282 GGTTTATTTCTCTAAGCACCTCCCT 60.339 44.000 0.00 0.00 0.00 4.20
4737 4769 4.882427 GGTTTATTTCTCTAAGCACCTCCC 59.118 45.833 0.00 0.00 0.00 4.30
4738 4770 5.497474 TGGTTTATTTCTCTAAGCACCTCC 58.503 41.667 0.00 0.00 0.00 4.30
4739 4771 6.314152 GTCTGGTTTATTTCTCTAAGCACCTC 59.686 42.308 0.00 0.00 0.00 3.85
4740 4772 6.013293 AGTCTGGTTTATTTCTCTAAGCACCT 60.013 38.462 0.00 0.00 0.00 4.00
4741 4773 6.174049 AGTCTGGTTTATTTCTCTAAGCACC 58.826 40.000 0.00 0.00 0.00 5.01
4742 4774 7.674471 AAGTCTGGTTTATTTCTCTAAGCAC 57.326 36.000 0.00 0.00 0.00 4.40
4743 4775 7.390718 GGAAAGTCTGGTTTATTTCTCTAAGCA 59.609 37.037 0.00 0.00 33.25 3.91
4744 4776 7.608376 AGGAAAGTCTGGTTTATTTCTCTAAGC 59.392 37.037 0.00 0.00 33.25 3.09
4745 4777 9.508642 AAGGAAAGTCTGGTTTATTTCTCTAAG 57.491 33.333 0.00 0.00 33.25 2.18
4748 4780 9.508642 CTTAAGGAAAGTCTGGTTTATTTCTCT 57.491 33.333 0.00 0.00 33.25 3.10
4749 4781 8.237949 GCTTAAGGAAAGTCTGGTTTATTTCTC 58.762 37.037 4.29 0.00 37.53 2.87
4750 4782 7.724061 TGCTTAAGGAAAGTCTGGTTTATTTCT 59.276 33.333 4.29 0.00 37.53 2.52
4751 4783 7.808381 GTGCTTAAGGAAAGTCTGGTTTATTTC 59.192 37.037 4.29 0.00 37.53 2.17
4752 4784 7.255836 GGTGCTTAAGGAAAGTCTGGTTTATTT 60.256 37.037 4.29 0.00 37.53 1.40
4753 4785 6.208797 GGTGCTTAAGGAAAGTCTGGTTTATT 59.791 38.462 4.29 0.00 37.53 1.40
4754 4786 5.710567 GGTGCTTAAGGAAAGTCTGGTTTAT 59.289 40.000 4.29 0.00 37.53 1.40
4755 4787 5.067954 GGTGCTTAAGGAAAGTCTGGTTTA 58.932 41.667 4.29 0.00 37.53 2.01
4756 4788 3.889538 GGTGCTTAAGGAAAGTCTGGTTT 59.110 43.478 4.29 0.00 37.53 3.27
4757 4789 3.487372 GGTGCTTAAGGAAAGTCTGGTT 58.513 45.455 4.29 0.00 37.53 3.67
4758 4790 2.550208 CGGTGCTTAAGGAAAGTCTGGT 60.550 50.000 4.29 0.00 37.53 4.00
4759 4791 2.076863 CGGTGCTTAAGGAAAGTCTGG 58.923 52.381 4.29 0.00 37.53 3.86
4760 4792 2.076863 CCGGTGCTTAAGGAAAGTCTG 58.923 52.381 4.29 0.00 37.53 3.51
4761 4793 1.697982 ACCGGTGCTTAAGGAAAGTCT 59.302 47.619 6.12 0.00 37.53 3.24
4762 4794 1.804748 CACCGGTGCTTAAGGAAAGTC 59.195 52.381 24.02 0.00 37.53 3.01
4763 4795 1.892209 CACCGGTGCTTAAGGAAAGT 58.108 50.000 24.02 0.00 37.53 2.66
4775 4807 3.813166 CCCTATACAAATAAGCACCGGTG 59.187 47.826 30.66 30.66 0.00 4.94
4776 4808 3.457012 ACCCTATACAAATAAGCACCGGT 59.543 43.478 0.00 0.00 0.00 5.28
4777 4809 4.081322 ACCCTATACAAATAAGCACCGG 57.919 45.455 0.00 0.00 0.00 5.28
4778 4810 5.924825 GTCTACCCTATACAAATAAGCACCG 59.075 44.000 0.00 0.00 0.00 4.94
4779 4811 5.924825 CGTCTACCCTATACAAATAAGCACC 59.075 44.000 0.00 0.00 0.00 5.01
4780 4812 5.404667 GCGTCTACCCTATACAAATAAGCAC 59.595 44.000 0.00 0.00 0.00 4.40
4781 4813 5.303589 AGCGTCTACCCTATACAAATAAGCA 59.696 40.000 0.00 0.00 0.00 3.91
4782 4814 5.780984 AGCGTCTACCCTATACAAATAAGC 58.219 41.667 0.00 0.00 0.00 3.09
4783 4815 9.189723 GTTAAGCGTCTACCCTATACAAATAAG 57.810 37.037 0.00 0.00 0.00 1.73
4784 4816 8.917088 AGTTAAGCGTCTACCCTATACAAATAA 58.083 33.333 0.00 0.00 0.00 1.40
4785 4817 8.469309 AGTTAAGCGTCTACCCTATACAAATA 57.531 34.615 0.00 0.00 0.00 1.40
4786 4818 7.357429 AGTTAAGCGTCTACCCTATACAAAT 57.643 36.000 0.00 0.00 0.00 2.32
4787 4819 6.780457 AGTTAAGCGTCTACCCTATACAAA 57.220 37.500 0.00 0.00 0.00 2.83
4788 4820 7.880160 TTAGTTAAGCGTCTACCCTATACAA 57.120 36.000 0.00 0.00 0.00 2.41
4789 4821 7.502120 CTTAGTTAAGCGTCTACCCTATACA 57.498 40.000 0.00 0.00 0.00 2.29
4804 4836 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
4805 4837 7.870509 TTATACAGGAGAGACGCTTAGTTAA 57.129 36.000 0.00 0.00 0.00 2.01
4806 4838 7.870509 TTTATACAGGAGAGACGCTTAGTTA 57.129 36.000 0.00 0.00 0.00 2.24
4807 4839 6.770746 TTTATACAGGAGAGACGCTTAGTT 57.229 37.500 0.00 0.00 0.00 2.24
4808 4840 6.963083 ATTTATACAGGAGAGACGCTTAGT 57.037 37.500 0.00 0.00 0.00 2.24
4809 4841 7.531716 CCTATTTATACAGGAGAGACGCTTAG 58.468 42.308 0.00 0.00 33.42 2.18
4810 4842 6.072064 GCCTATTTATACAGGAGAGACGCTTA 60.072 42.308 0.00 0.00 33.42 3.09
4811 4843 5.279056 GCCTATTTATACAGGAGAGACGCTT 60.279 44.000 0.00 0.00 33.42 4.68
4812 4844 4.218852 GCCTATTTATACAGGAGAGACGCT 59.781 45.833 0.00 0.00 33.42 5.07
4813 4845 4.022242 TGCCTATTTATACAGGAGAGACGC 60.022 45.833 0.00 0.00 33.42 5.19
4814 4846 5.462405 GTGCCTATTTATACAGGAGAGACG 58.538 45.833 0.00 0.00 33.42 4.18
4815 4847 5.565045 CGGTGCCTATTTATACAGGAGAGAC 60.565 48.000 0.00 0.00 33.42 3.36
4816 4848 4.523173 CGGTGCCTATTTATACAGGAGAGA 59.477 45.833 0.00 0.00 33.42 3.10
4817 4849 4.322049 CCGGTGCCTATTTATACAGGAGAG 60.322 50.000 0.00 0.00 33.42 3.20
4818 4850 3.576982 CCGGTGCCTATTTATACAGGAGA 59.423 47.826 0.00 0.00 33.42 3.71
4819 4851 3.323979 ACCGGTGCCTATTTATACAGGAG 59.676 47.826 6.12 0.00 33.42 3.69
4820 4852 3.070446 CACCGGTGCCTATTTATACAGGA 59.930 47.826 24.02 0.00 33.42 3.86
4821 4853 3.399330 CACCGGTGCCTATTTATACAGG 58.601 50.000 24.02 0.00 35.04 4.00
4835 4867 2.154462 AGATTTTCTGAAGCACCGGTG 58.846 47.619 30.66 30.66 0.00 4.94
4836 4868 2.427506 GAGATTTTCTGAAGCACCGGT 58.572 47.619 0.00 0.00 0.00 5.28
4837 4869 1.394917 CGAGATTTTCTGAAGCACCGG 59.605 52.381 0.00 0.00 0.00 5.28
4838 4870 1.394917 CCGAGATTTTCTGAAGCACCG 59.605 52.381 0.00 0.00 0.00 4.94
4839 4871 2.427506 ACCGAGATTTTCTGAAGCACC 58.572 47.619 0.00 0.00 0.00 5.01
4840 4872 4.489679 AAACCGAGATTTTCTGAAGCAC 57.510 40.909 0.00 0.00 0.00 4.40
4841 4873 6.817765 AATAAACCGAGATTTTCTGAAGCA 57.182 33.333 0.00 0.00 0.00 3.91
4842 4874 8.520835 AAAAATAAACCGAGATTTTCTGAAGC 57.479 30.769 0.00 0.00 34.86 3.86
4843 4875 9.899226 AGAAAAATAAACCGAGATTTTCTGAAG 57.101 29.630 10.10 0.00 44.34 3.02
4850 4882 9.687210 GGTGTTTAGAAAAATAAACCGAGATTT 57.313 29.630 6.84 0.00 42.45 2.17
4851 4883 8.301720 GGGTGTTTAGAAAAATAAACCGAGATT 58.698 33.333 6.84 0.00 42.45 2.40
4852 4884 7.094075 GGGGTGTTTAGAAAAATAAACCGAGAT 60.094 37.037 6.84 0.00 42.45 2.75
4853 4885 6.207221 GGGGTGTTTAGAAAAATAAACCGAGA 59.793 38.462 6.84 0.00 42.45 4.04
4854 4886 6.208007 AGGGGTGTTTAGAAAAATAAACCGAG 59.792 38.462 6.84 0.00 42.45 4.63
4855 4887 6.069994 AGGGGTGTTTAGAAAAATAAACCGA 58.930 36.000 6.84 0.00 42.45 4.69
4856 4888 6.208007 AGAGGGGTGTTTAGAAAAATAAACCG 59.792 38.462 6.84 0.00 42.45 4.44
4857 4889 7.534723 AGAGGGGTGTTTAGAAAAATAAACC 57.465 36.000 6.84 0.00 42.45 3.27
4859 4891 8.799367 GCTTAGAGGGGTGTTTAGAAAAATAAA 58.201 33.333 0.00 0.00 0.00 1.40
4860 4892 7.945664 TGCTTAGAGGGGTGTTTAGAAAAATAA 59.054 33.333 0.00 0.00 0.00 1.40
4861 4893 7.463431 TGCTTAGAGGGGTGTTTAGAAAAATA 58.537 34.615 0.00 0.00 0.00 1.40
4862 4894 6.311735 TGCTTAGAGGGGTGTTTAGAAAAAT 58.688 36.000 0.00 0.00 0.00 1.82
4863 4895 5.697067 TGCTTAGAGGGGTGTTTAGAAAAA 58.303 37.500 0.00 0.00 0.00 1.94
4864 4896 5.313280 TGCTTAGAGGGGTGTTTAGAAAA 57.687 39.130 0.00 0.00 0.00 2.29
4865 4897 4.986054 TGCTTAGAGGGGTGTTTAGAAA 57.014 40.909 0.00 0.00 0.00 2.52
4866 4898 4.783227 AGATGCTTAGAGGGGTGTTTAGAA 59.217 41.667 0.00 0.00 0.00 2.10
4867 4899 4.362677 AGATGCTTAGAGGGGTGTTTAGA 58.637 43.478 0.00 0.00 0.00 2.10
4868 4900 4.443598 GGAGATGCTTAGAGGGGTGTTTAG 60.444 50.000 0.00 0.00 0.00 1.85
4869 4901 3.454812 GGAGATGCTTAGAGGGGTGTTTA 59.545 47.826 0.00 0.00 0.00 2.01
4870 4902 2.239907 GGAGATGCTTAGAGGGGTGTTT 59.760 50.000 0.00 0.00 0.00 2.83
4871 4903 1.840635 GGAGATGCTTAGAGGGGTGTT 59.159 52.381 0.00 0.00 0.00 3.32
4872 4904 1.501582 GGAGATGCTTAGAGGGGTGT 58.498 55.000 0.00 0.00 0.00 4.16
4873 4905 0.761802 GGGAGATGCTTAGAGGGGTG 59.238 60.000 0.00 0.00 0.00 4.61
4874 4906 0.343372 TGGGAGATGCTTAGAGGGGT 59.657 55.000 0.00 0.00 0.00 4.95
4875 4907 1.739750 ATGGGAGATGCTTAGAGGGG 58.260 55.000 0.00 0.00 0.00 4.79
4876 4908 2.441001 ACAATGGGAGATGCTTAGAGGG 59.559 50.000 0.00 0.00 0.00 4.30
4877 4909 3.853355 ACAATGGGAGATGCTTAGAGG 57.147 47.619 0.00 0.00 0.00 3.69
4878 4910 5.282055 TGTACAATGGGAGATGCTTAGAG 57.718 43.478 0.00 0.00 0.00 2.43
4879 4911 4.101585 CCTGTACAATGGGAGATGCTTAGA 59.898 45.833 0.00 0.00 0.00 2.10
4880 4912 4.384056 CCTGTACAATGGGAGATGCTTAG 58.616 47.826 0.00 0.00 0.00 2.18
4881 4913 3.136443 CCCTGTACAATGGGAGATGCTTA 59.864 47.826 13.82 0.00 46.15 3.09
4882 4914 2.092212 CCCTGTACAATGGGAGATGCTT 60.092 50.000 13.82 0.00 46.15 3.91
4883 4915 1.492176 CCCTGTACAATGGGAGATGCT 59.508 52.381 13.82 0.00 46.15 3.79
4884 4916 1.972872 CCCTGTACAATGGGAGATGC 58.027 55.000 13.82 0.00 46.15 3.91
4885 4917 1.477558 GGCCCTGTACAATGGGAGATG 60.478 57.143 21.53 0.00 46.15 2.90
4886 4918 0.846693 GGCCCTGTACAATGGGAGAT 59.153 55.000 21.53 0.00 46.15 2.75
4887 4919 0.253160 AGGCCCTGTACAATGGGAGA 60.253 55.000 21.53 0.00 46.15 3.71
4888 4920 0.625849 AAGGCCCTGTACAATGGGAG 59.374 55.000 21.53 4.54 46.15 4.30
4889 4921 1.562475 GTAAGGCCCTGTACAATGGGA 59.438 52.381 21.53 0.42 46.15 4.37
4890 4922 1.283613 TGTAAGGCCCTGTACAATGGG 59.716 52.381 14.57 14.57 46.00 4.00
4891 4923 2.799126 TGTAAGGCCCTGTACAATGG 57.201 50.000 0.00 1.58 0.00 3.16
4892 4924 3.627577 GTCATGTAAGGCCCTGTACAATG 59.372 47.826 13.76 12.23 34.08 2.82
4893 4925 3.523564 AGTCATGTAAGGCCCTGTACAAT 59.476 43.478 13.76 3.09 34.08 2.71
4894 4926 2.910319 AGTCATGTAAGGCCCTGTACAA 59.090 45.455 13.76 0.00 34.08 2.41
4895 4927 2.236146 CAGTCATGTAAGGCCCTGTACA 59.764 50.000 12.51 12.51 34.84 2.90
4896 4928 2.500098 TCAGTCATGTAAGGCCCTGTAC 59.500 50.000 0.00 0.00 0.00 2.90
4897 4929 2.827755 TCAGTCATGTAAGGCCCTGTA 58.172 47.619 0.00 0.00 0.00 2.74
4898 4930 1.656587 TCAGTCATGTAAGGCCCTGT 58.343 50.000 0.00 0.00 0.00 4.00
4899 4931 2.787473 TTCAGTCATGTAAGGCCCTG 57.213 50.000 0.00 0.00 0.00 4.45
4900 4932 4.019174 CAATTTCAGTCATGTAAGGCCCT 58.981 43.478 0.00 0.00 0.00 5.19
4901 4933 3.429410 GCAATTTCAGTCATGTAAGGCCC 60.429 47.826 0.00 0.00 0.00 5.80
4902 4934 3.429410 GGCAATTTCAGTCATGTAAGGCC 60.429 47.826 0.00 0.00 34.94 5.19
4903 4935 3.193267 TGGCAATTTCAGTCATGTAAGGC 59.807 43.478 0.00 0.00 0.00 4.35
4904 4936 5.585390 GATGGCAATTTCAGTCATGTAAGG 58.415 41.667 0.00 0.00 30.17 2.69
4905 4937 5.268544 CGATGGCAATTTCAGTCATGTAAG 58.731 41.667 0.00 0.00 30.17 2.34
4906 4938 4.438608 GCGATGGCAATTTCAGTCATGTAA 60.439 41.667 0.00 0.00 39.62 2.41
4907 4939 3.065233 GCGATGGCAATTTCAGTCATGTA 59.935 43.478 0.00 0.00 39.62 2.29
4908 4940 2.159338 GCGATGGCAATTTCAGTCATGT 60.159 45.455 0.00 0.00 39.62 3.21
4909 4941 2.456989 GCGATGGCAATTTCAGTCATG 58.543 47.619 0.00 0.00 39.62 3.07
4910 4942 2.857592 GCGATGGCAATTTCAGTCAT 57.142 45.000 0.00 0.00 39.62 3.06
4923 4955 2.101249 AGGCCATTATGTTTTGCGATGG 59.899 45.455 5.01 0.00 40.13 3.51
4924 4956 3.117794 CAGGCCATTATGTTTTGCGATG 58.882 45.455 5.01 0.00 0.00 3.84
4925 4957 3.023119 TCAGGCCATTATGTTTTGCGAT 58.977 40.909 5.01 0.00 0.00 4.58
4926 4958 2.423185 CTCAGGCCATTATGTTTTGCGA 59.577 45.455 5.01 0.00 0.00 5.10
4927 4959 2.164219 ACTCAGGCCATTATGTTTTGCG 59.836 45.455 5.01 0.00 0.00 4.85
4928 4960 3.514645 CACTCAGGCCATTATGTTTTGC 58.485 45.455 5.01 0.00 0.00 3.68
4929 4961 3.514645 GCACTCAGGCCATTATGTTTTG 58.485 45.455 5.01 0.00 0.00 2.44
4930 4962 3.874392 GCACTCAGGCCATTATGTTTT 57.126 42.857 5.01 0.00 0.00 2.43
4948 4980 1.208293 TGACATATTAGGTGCGTGGCA 59.792 47.619 0.00 0.00 35.60 4.92
4949 4981 1.597663 GTGACATATTAGGTGCGTGGC 59.402 52.381 0.00 0.00 0.00 5.01
4950 4982 2.607635 GTGTGACATATTAGGTGCGTGG 59.392 50.000 0.00 0.00 0.00 4.94
4951 4983 3.521560 AGTGTGACATATTAGGTGCGTG 58.478 45.455 0.00 0.00 0.00 5.34
4952 4984 3.887621 AGTGTGACATATTAGGTGCGT 57.112 42.857 0.00 0.00 0.00 5.24
4953 4985 5.983118 TGATAAGTGTGACATATTAGGTGCG 59.017 40.000 0.00 0.00 0.00 5.34
4954 4986 7.969536 ATGATAAGTGTGACATATTAGGTGC 57.030 36.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.