Multiple sequence alignment - TraesCS7D01G320600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G320600 chr7D 100.000 3986 0 0 1 3986 410524614 410520629 0.000000e+00 7361.0
1 TraesCS7D01G320600 chr7D 87.167 413 45 5 3107 3513 565217415 565217825 2.810000e-126 462.0
2 TraesCS7D01G320600 chr7D 80.198 101 17 3 521 618 503248210 503248110 5.530000e-09 73.1
3 TraesCS7D01G320600 chr7A 95.750 2212 65 11 925 3109 471550311 471552520 0.000000e+00 3537.0
4 TraesCS7D01G320600 chr7A 89.231 520 24 14 376 894 471549541 471550029 4.380000e-174 621.0
5 TraesCS7D01G320600 chr7A 95.325 385 12 3 1 379 471549055 471549439 1.230000e-169 606.0
6 TraesCS7D01G320600 chr7A 87.500 416 40 8 3107 3514 604282549 604282960 1.680000e-128 470.0
7 TraesCS7D01G320600 chr7A 94.355 124 5 2 3588 3710 471552567 471552689 5.260000e-44 189.0
8 TraesCS7D01G320600 chr7A 88.608 158 5 4 3829 3986 471556536 471556680 3.160000e-41 180.0
9 TraesCS7D01G320600 chr7A 83.486 109 18 0 2291 2399 107916705 107916597 7.050000e-18 102.0
10 TraesCS7D01G320600 chr7B 94.149 1111 46 6 948 2056 425157544 425158637 0.000000e+00 1674.0
11 TraesCS7D01G320600 chr7B 95.389 1041 35 4 2049 3080 425158892 425159928 0.000000e+00 1644.0
12 TraesCS7D01G320600 chr7B 90.625 224 18 3 3564 3784 425166697 425166920 1.080000e-75 294.0
13 TraesCS7D01G320600 chr7B 84.071 113 17 1 2291 2403 61627839 61627728 1.510000e-19 108.0
14 TraesCS7D01G320600 chr7B 79.861 144 26 3 2288 2430 61746188 61746047 7.050000e-18 102.0
15 TraesCS7D01G320600 chr1D 90.338 414 29 6 3106 3512 11134031 11134440 2.110000e-147 532.0
16 TraesCS7D01G320600 chrUn 89.294 411 27 8 3109 3513 102647351 102647750 2.140000e-137 499.0
17 TraesCS7D01G320600 chrUn 87.019 416 44 6 3107 3515 71622032 71622444 1.010000e-125 460.0
18 TraesCS7D01G320600 chr1A 87.589 419 38 12 3107 3516 568464087 568463674 1.300000e-129 473.0
19 TraesCS7D01G320600 chr1A 88.889 81 8 1 810 889 11061771 11061691 9.120000e-17 99.0
20 TraesCS7D01G320600 chr6D 87.198 414 45 4 3106 3513 464852282 464851871 7.800000e-127 464.0
21 TraesCS7D01G320600 chr6D 81.905 105 16 3 529 631 101263451 101263554 7.100000e-13 86.1
22 TraesCS7D01G320600 chr5D 87.198 414 43 6 3107 3513 27621808 27622218 2.810000e-126 462.0
23 TraesCS7D01G320600 chr5D 81.233 373 55 10 2067 2433 320873913 320873550 1.810000e-73 287.0
24 TraesCS7D01G320600 chr6A 87.167 413 44 5 3108 3513 566444308 566444718 1.010000e-125 460.0
25 TraesCS7D01G320600 chr5A 80.676 414 65 10 2067 2474 413429412 413429816 1.390000e-79 307.0
26 TraesCS7D01G320600 chr5B 80.048 416 68 10 2067 2476 372081688 372081282 1.080000e-75 294.0
27 TraesCS7D01G320600 chr1B 81.111 180 27 6 231 407 240439833 240440008 1.930000e-28 137.0
28 TraesCS7D01G320600 chr4B 82.911 158 19 8 480 633 578054759 578054912 6.950000e-28 135.0
29 TraesCS7D01G320600 chr2A 79.630 162 27 4 468 627 513096010 513096167 1.170000e-20 111.0
30 TraesCS7D01G320600 chr4A 80.667 150 21 6 489 636 6815149 6815006 4.210000e-20 110.0
31 TraesCS7D01G320600 chr2D 88.158 76 8 1 818 893 617956302 617956376 5.490000e-14 89.8
32 TraesCS7D01G320600 chr2D 79.832 119 11 8 2291 2403 100432469 100432580 1.540000e-09 75.0
33 TraesCS7D01G320600 chr4D 86.420 81 7 4 557 635 462795066 462794988 7.100000e-13 86.1
34 TraesCS7D01G320600 chr6B 97.436 39 0 1 810 847 132409926 132409964 9.250000e-07 65.8
35 TraesCS7D01G320600 chr2B 93.182 44 3 0 768 811 230896795 230896752 9.250000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G320600 chr7D 410520629 410524614 3985 True 7361.0 7361 100.0000 1 3986 1 chr7D.!!$R1 3985
1 TraesCS7D01G320600 chr7A 471549055 471556680 7625 False 1026.6 3537 92.6538 1 3986 5 chr7A.!!$F2 3985
2 TraesCS7D01G320600 chr7B 425157544 425159928 2384 False 1659.0 1674 94.7690 948 3080 2 chr7B.!!$F2 2132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1355 2.022195 CAGTGATCTTGGCCCAATCAG 58.978 52.381 11.0 0.0 30.43 2.90 F
1084 1448 1.135689 GCACTGATGTAAACAAGGCCG 60.136 52.381 0.0 0.0 0.00 6.13 F
2296 2927 0.030369 ACGACGCCCAGACGATTATC 59.970 55.000 0.0 0.0 40.26 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 2927 0.039074 AGAAGGTCTTGCACTCGTCG 60.039 55.000 0.00 0.0 0.00 5.12 R
2521 3152 2.292016 TCCACGTGTTAAACATTGGCAG 59.708 45.455 15.65 0.0 35.34 4.85 R
3221 3881 0.108662 CTTGAAATTTGGAGCGGGCC 60.109 55.000 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 35 9.267084 AGTTGATCTTTCACTCTCTCTTTTTAC 57.733 33.333 0.00 0.00 0.00 2.01
97 103 8.915871 TGATACTTGATTTTGCTTTATGCTTC 57.084 30.769 0.00 0.00 43.37 3.86
247 254 8.417106 CCATCTAGCTCTAATTCTCTTAACACA 58.583 37.037 0.00 0.00 0.00 3.72
532 644 4.558538 AAGACTTCATCACAAGCAACAC 57.441 40.909 0.00 0.00 0.00 3.32
544 657 2.594529 AGCAACACGAATAGCAAACG 57.405 45.000 0.00 0.00 0.00 3.60
549 662 4.201391 GCAACACGAATAGCAAACGAAATG 60.201 41.667 0.00 0.00 0.00 2.32
576 689 8.792830 AGATTGGACTTTCGATTCAAAAGATA 57.207 30.769 4.14 0.00 37.22 1.98
613 726 4.935702 TGACATGTCAAAAGGAAAAGCAG 58.064 39.130 26.02 0.00 36.53 4.24
678 791 7.811117 AAGTTGTACTACCAAAAACTGCATA 57.189 32.000 3.72 0.00 31.69 3.14
679 792 7.198306 AGTTGTACTACCAAAAACTGCATAC 57.802 36.000 3.72 0.00 30.17 2.39
680 793 6.768861 AGTTGTACTACCAAAAACTGCATACA 59.231 34.615 3.72 0.00 30.17 2.29
681 794 7.447238 AGTTGTACTACCAAAAACTGCATACAT 59.553 33.333 3.72 0.00 30.17 2.29
682 795 8.723311 GTTGTACTACCAAAAACTGCATACATA 58.277 33.333 0.00 0.00 0.00 2.29
683 796 9.456147 TTGTACTACCAAAAACTGCATACATAT 57.544 29.630 0.00 0.00 0.00 1.78
684 797 9.104965 TGTACTACCAAAAACTGCATACATATC 57.895 33.333 0.00 0.00 0.00 1.63
685 798 7.568199 ACTACCAAAAACTGCATACATATCC 57.432 36.000 0.00 0.00 0.00 2.59
686 799 5.852282 ACCAAAAACTGCATACATATCCC 57.148 39.130 0.00 0.00 0.00 3.85
687 800 5.518865 ACCAAAAACTGCATACATATCCCT 58.481 37.500 0.00 0.00 0.00 4.20
688 801 5.594317 ACCAAAAACTGCATACATATCCCTC 59.406 40.000 0.00 0.00 0.00 4.30
689 802 5.593909 CCAAAAACTGCATACATATCCCTCA 59.406 40.000 0.00 0.00 0.00 3.86
690 803 6.096705 CCAAAAACTGCATACATATCCCTCAA 59.903 38.462 0.00 0.00 0.00 3.02
691 804 7.363705 CCAAAAACTGCATACATATCCCTCAAA 60.364 37.037 0.00 0.00 0.00 2.69
692 805 7.716799 AAAACTGCATACATATCCCTCAAAA 57.283 32.000 0.00 0.00 0.00 2.44
693 806 7.716799 AAACTGCATACATATCCCTCAAAAA 57.283 32.000 0.00 0.00 0.00 1.94
765 878 8.816640 TTTTCTAATCTTGGCTGATGAAAAAC 57.183 30.769 12.21 0.00 31.47 2.43
770 883 7.472334 AATCTTGGCTGATGAAAAACATAGT 57.528 32.000 0.00 0.00 39.56 2.12
793 906 2.484264 CGCTATAGCAAAATAGGGCCAC 59.516 50.000 23.99 0.00 42.21 5.01
809 922 4.341487 GGGCCACCTTTAAAATACACTCT 58.659 43.478 4.39 0.00 0.00 3.24
849 962 9.927081 AATGATCCAGACCTATTATCAAAGTTT 57.073 29.630 0.00 0.00 30.90 2.66
854 967 8.148351 TCCAGACCTATTATCAAAGTTTATCGG 58.852 37.037 0.00 0.00 0.00 4.18
875 988 6.103330 TCGGAAATACAAATCATCTCGAACA 58.897 36.000 0.00 0.00 0.00 3.18
935 1299 8.638685 TTTAGTTCAGACATAACGCTATAACC 57.361 34.615 0.00 0.00 32.00 2.85
956 1320 6.347859 ACCTTCTATTAGTGGTGCTATAGC 57.652 41.667 18.18 18.18 42.50 2.97
991 1355 2.022195 CAGTGATCTTGGCCCAATCAG 58.978 52.381 11.00 0.00 30.43 2.90
994 1358 2.883386 GTGATCTTGGCCCAATCAGATC 59.117 50.000 14.47 14.47 34.47 2.75
1084 1448 1.135689 GCACTGATGTAAACAAGGCCG 60.136 52.381 0.00 0.00 0.00 6.13
1111 1475 2.144730 TGTCCAAAATGTTACCGGTCG 58.855 47.619 12.40 0.00 0.00 4.79
1877 2241 1.798735 CAAGCGCATCTTCCACCTG 59.201 57.895 11.47 0.00 31.27 4.00
2251 2882 5.068987 CGAGATGGAGAAGAAGAAGGAGAAT 59.931 44.000 0.00 0.00 0.00 2.40
2253 2884 5.963253 AGATGGAGAAGAAGAAGGAGAATGA 59.037 40.000 0.00 0.00 0.00 2.57
2255 2886 4.081198 TGGAGAAGAAGAAGGAGAATGAGC 60.081 45.833 0.00 0.00 0.00 4.26
2281 2912 4.509737 GGCGAGCTGGGGTACGAC 62.510 72.222 0.00 0.00 0.00 4.34
2293 2924 1.138247 GTACGACGCCCAGACGATT 59.862 57.895 0.00 0.00 40.26 3.34
2296 2927 0.030369 ACGACGCCCAGACGATTATC 59.970 55.000 0.00 0.00 40.26 1.75
2359 2990 3.007920 CTGCTCCTCACCTGGGCT 61.008 66.667 0.00 0.00 0.00 5.19
2361 2992 1.965754 CTGCTCCTCACCTGGGCTAC 61.966 65.000 0.00 0.00 0.00 3.58
2371 3002 2.591753 TGGGCTACCATGCTGCTC 59.408 61.111 0.00 0.00 43.37 4.26
2521 3152 4.367023 TCCGGCGCCACTGTACAC 62.367 66.667 28.98 0.00 0.00 2.90
2524 3155 3.423154 GGCGCCACTGTACACTGC 61.423 66.667 24.80 0.00 0.00 4.40
2583 3219 1.801913 GATCAACGAGACGCTGCGT 60.802 57.895 29.37 29.37 45.10 5.24
3007 3651 2.031012 GCTTGGGTTTTGGCAGCC 59.969 61.111 3.66 3.66 34.62 4.85
3105 3765 2.654749 TGTCTATGAAGGCAGTCGTG 57.345 50.000 0.00 0.00 30.57 4.35
3106 3766 1.204704 TGTCTATGAAGGCAGTCGTGG 59.795 52.381 0.00 0.00 30.57 4.94
3107 3767 1.476891 GTCTATGAAGGCAGTCGTGGA 59.523 52.381 0.00 0.00 0.00 4.02
3108 3768 1.751351 TCTATGAAGGCAGTCGTGGAG 59.249 52.381 0.00 0.00 0.00 3.86
3109 3769 1.478510 CTATGAAGGCAGTCGTGGAGT 59.521 52.381 0.00 0.00 0.00 3.85
3110 3770 1.557099 ATGAAGGCAGTCGTGGAGTA 58.443 50.000 0.00 0.00 0.00 2.59
3111 3771 0.888619 TGAAGGCAGTCGTGGAGTAG 59.111 55.000 0.00 0.00 0.00 2.57
3112 3772 0.173708 GAAGGCAGTCGTGGAGTAGG 59.826 60.000 0.00 0.00 0.00 3.18
3113 3773 1.258445 AAGGCAGTCGTGGAGTAGGG 61.258 60.000 0.00 0.00 0.00 3.53
3114 3774 2.184579 GCAGTCGTGGAGTAGGGC 59.815 66.667 0.00 0.00 0.00 5.19
3115 3775 2.490217 CAGTCGTGGAGTAGGGCG 59.510 66.667 0.00 0.00 0.00 6.13
3116 3776 2.035312 AGTCGTGGAGTAGGGCGT 59.965 61.111 0.00 0.00 0.00 5.68
3117 3777 1.605738 AGTCGTGGAGTAGGGCGTT 60.606 57.895 0.00 0.00 0.00 4.84
3118 3778 1.183676 AGTCGTGGAGTAGGGCGTTT 61.184 55.000 0.00 0.00 0.00 3.60
3119 3779 0.320160 GTCGTGGAGTAGGGCGTTTT 60.320 55.000 0.00 0.00 0.00 2.43
3120 3780 0.320073 TCGTGGAGTAGGGCGTTTTG 60.320 55.000 0.00 0.00 0.00 2.44
3121 3781 1.296056 CGTGGAGTAGGGCGTTTTGG 61.296 60.000 0.00 0.00 0.00 3.28
3122 3782 0.250597 GTGGAGTAGGGCGTTTTGGT 60.251 55.000 0.00 0.00 0.00 3.67
3123 3783 0.250553 TGGAGTAGGGCGTTTTGGTG 60.251 55.000 0.00 0.00 0.00 4.17
3124 3784 1.583495 GGAGTAGGGCGTTTTGGTGC 61.583 60.000 0.00 0.00 0.00 5.01
3129 3789 3.989787 GGCGTTTTGGTGCCCAGG 61.990 66.667 0.00 0.00 45.73 4.45
3130 3790 4.662961 GCGTTTTGGTGCCCAGGC 62.663 66.667 0.38 0.38 42.35 4.85
3131 3791 2.912025 CGTTTTGGTGCCCAGGCT 60.912 61.111 10.58 0.00 42.51 4.58
3132 3792 2.919494 CGTTTTGGTGCCCAGGCTC 61.919 63.158 10.58 6.18 42.51 4.70
3133 3793 1.832167 GTTTTGGTGCCCAGGCTCA 60.832 57.895 10.58 5.75 42.51 4.26
3134 3794 1.155859 TTTTGGTGCCCAGGCTCAT 59.844 52.632 10.58 0.00 42.51 2.90
3135 3795 0.899717 TTTTGGTGCCCAGGCTCATC 60.900 55.000 10.58 0.00 42.51 2.92
3136 3796 1.792757 TTTGGTGCCCAGGCTCATCT 61.793 55.000 10.58 0.00 42.51 2.90
3137 3797 0.913934 TTGGTGCCCAGGCTCATCTA 60.914 55.000 10.58 0.00 42.51 1.98
3138 3798 1.147153 GGTGCCCAGGCTCATCTAC 59.853 63.158 10.58 0.00 42.51 2.59
3139 3799 1.626356 GGTGCCCAGGCTCATCTACA 61.626 60.000 10.58 0.00 42.51 2.74
3140 3800 0.462759 GTGCCCAGGCTCATCTACAC 60.463 60.000 10.58 0.00 42.51 2.90
3141 3801 1.147153 GCCCAGGCTCATCTACACC 59.853 63.158 0.08 0.00 38.26 4.16
3142 3802 1.626356 GCCCAGGCTCATCTACACCA 61.626 60.000 0.08 0.00 38.26 4.17
3143 3803 1.135094 CCCAGGCTCATCTACACCAT 58.865 55.000 0.00 0.00 0.00 3.55
3144 3804 2.329267 CCCAGGCTCATCTACACCATA 58.671 52.381 0.00 0.00 0.00 2.74
3145 3805 2.705658 CCCAGGCTCATCTACACCATAA 59.294 50.000 0.00 0.00 0.00 1.90
3146 3806 3.136443 CCCAGGCTCATCTACACCATAAA 59.864 47.826 0.00 0.00 0.00 1.40
3147 3807 4.130118 CCAGGCTCATCTACACCATAAAC 58.870 47.826 0.00 0.00 0.00 2.01
3148 3808 4.384098 CCAGGCTCATCTACACCATAAACA 60.384 45.833 0.00 0.00 0.00 2.83
3149 3809 5.185454 CAGGCTCATCTACACCATAAACAA 58.815 41.667 0.00 0.00 0.00 2.83
3150 3810 5.824624 CAGGCTCATCTACACCATAAACAAT 59.175 40.000 0.00 0.00 0.00 2.71
3151 3811 6.319658 CAGGCTCATCTACACCATAAACAATT 59.680 38.462 0.00 0.00 0.00 2.32
3152 3812 6.543831 AGGCTCATCTACACCATAAACAATTC 59.456 38.462 0.00 0.00 0.00 2.17
3153 3813 6.422223 GCTCATCTACACCATAAACAATTCG 58.578 40.000 0.00 0.00 0.00 3.34
3154 3814 6.037172 GCTCATCTACACCATAAACAATTCGT 59.963 38.462 0.00 0.00 0.00 3.85
3155 3815 7.223971 GCTCATCTACACCATAAACAATTCGTA 59.776 37.037 0.00 0.00 0.00 3.43
3156 3816 9.093970 CTCATCTACACCATAAACAATTCGTAA 57.906 33.333 0.00 0.00 0.00 3.18
3157 3817 9.438228 TCATCTACACCATAAACAATTCGTAAA 57.562 29.630 0.00 0.00 0.00 2.01
3201 3861 9.561270 AAAATTTCCAAAACAAAATTTGTACGG 57.439 25.926 12.11 12.22 44.59 4.02
3202 3862 7.851387 ATTTCCAAAACAAAATTTGTACGGT 57.149 28.000 12.11 0.00 44.59 4.83
3203 3863 8.943909 ATTTCCAAAACAAAATTTGTACGGTA 57.056 26.923 12.11 4.42 44.59 4.02
3204 3864 8.767478 TTTCCAAAACAAAATTTGTACGGTAA 57.233 26.923 12.11 9.65 44.59 2.85
3205 3865 8.767478 TTCCAAAACAAAATTTGTACGGTAAA 57.233 26.923 12.11 2.42 44.59 2.01
3206 3866 8.943909 TCCAAAACAAAATTTGTACGGTAAAT 57.056 26.923 12.11 0.00 44.59 1.40
3217 3877 7.956508 TTTGTACGGTAAATAATTTGATGCG 57.043 32.000 0.00 0.00 0.00 4.73
3218 3878 6.665474 TGTACGGTAAATAATTTGATGCGT 57.335 33.333 0.00 0.00 0.00 5.24
3219 3879 6.479436 TGTACGGTAAATAATTTGATGCGTG 58.521 36.000 0.00 0.00 0.00 5.34
3220 3880 5.804692 ACGGTAAATAATTTGATGCGTGA 57.195 34.783 0.00 0.00 0.00 4.35
3221 3881 5.806286 ACGGTAAATAATTTGATGCGTGAG 58.194 37.500 0.00 0.00 0.00 3.51
3222 3882 5.204833 CGGTAAATAATTTGATGCGTGAGG 58.795 41.667 0.00 0.00 0.00 3.86
3223 3883 4.976116 GGTAAATAATTTGATGCGTGAGGC 59.024 41.667 0.00 0.00 43.96 4.70
3224 3884 3.715628 AATAATTTGATGCGTGAGGCC 57.284 42.857 0.00 0.00 42.61 5.19
3225 3885 1.388547 TAATTTGATGCGTGAGGCCC 58.611 50.000 0.00 0.00 42.61 5.80
3226 3886 1.656818 AATTTGATGCGTGAGGCCCG 61.657 55.000 0.00 0.00 42.61 6.13
3233 3893 4.697756 CGTGAGGCCCGCTCCAAA 62.698 66.667 0.00 0.00 0.00 3.28
3234 3894 2.044946 GTGAGGCCCGCTCCAAAT 60.045 61.111 0.00 0.00 0.00 2.32
3235 3895 1.678970 GTGAGGCCCGCTCCAAATT 60.679 57.895 0.00 0.00 0.00 1.82
3236 3896 1.076549 TGAGGCCCGCTCCAAATTT 59.923 52.632 0.00 0.00 0.00 1.82
3237 3897 0.965363 TGAGGCCCGCTCCAAATTTC 60.965 55.000 0.00 0.00 0.00 2.17
3238 3898 0.965363 GAGGCCCGCTCCAAATTTCA 60.965 55.000 0.00 0.00 0.00 2.69
3239 3899 0.541764 AGGCCCGCTCCAAATTTCAA 60.542 50.000 0.00 0.00 0.00 2.69
3240 3900 0.108662 GGCCCGCTCCAAATTTCAAG 60.109 55.000 0.00 0.00 0.00 3.02
3241 3901 0.603065 GCCCGCTCCAAATTTCAAGT 59.397 50.000 0.00 0.00 0.00 3.16
3242 3902 1.402852 GCCCGCTCCAAATTTCAAGTC 60.403 52.381 0.00 0.00 0.00 3.01
3243 3903 1.885887 CCCGCTCCAAATTTCAAGTCA 59.114 47.619 0.00 0.00 0.00 3.41
3244 3904 2.493278 CCCGCTCCAAATTTCAAGTCAT 59.507 45.455 0.00 0.00 0.00 3.06
3245 3905 3.056607 CCCGCTCCAAATTTCAAGTCATT 60.057 43.478 0.00 0.00 0.00 2.57
3246 3906 4.559153 CCGCTCCAAATTTCAAGTCATTT 58.441 39.130 0.00 0.00 0.00 2.32
3247 3907 5.336372 CCCGCTCCAAATTTCAAGTCATTTA 60.336 40.000 0.00 0.00 0.00 1.40
3248 3908 5.801947 CCGCTCCAAATTTCAAGTCATTTAG 59.198 40.000 0.00 0.00 0.00 1.85
3249 3909 6.349280 CCGCTCCAAATTTCAAGTCATTTAGA 60.349 38.462 0.00 0.00 0.00 2.10
3250 3910 7.253422 CGCTCCAAATTTCAAGTCATTTAGAT 58.747 34.615 0.00 0.00 0.00 1.98
3251 3911 8.397906 CGCTCCAAATTTCAAGTCATTTAGATA 58.602 33.333 0.00 0.00 0.00 1.98
3259 3919 9.842775 ATTTCAAGTCATTTAGATATCTGAGCA 57.157 29.630 15.79 0.00 0.00 4.26
3260 3920 8.883954 TTCAAGTCATTTAGATATCTGAGCAG 57.116 34.615 15.79 2.07 0.00 4.24
3261 3921 6.927936 TCAAGTCATTTAGATATCTGAGCAGC 59.072 38.462 15.79 2.30 0.00 5.25
3262 3922 6.669125 AGTCATTTAGATATCTGAGCAGCT 57.331 37.500 15.79 0.00 0.00 4.24
3263 3923 6.690530 AGTCATTTAGATATCTGAGCAGCTC 58.309 40.000 16.21 16.21 0.00 4.09
3264 3924 6.494491 AGTCATTTAGATATCTGAGCAGCTCT 59.506 38.462 23.15 5.93 0.00 4.09
3265 3925 6.808212 GTCATTTAGATATCTGAGCAGCTCTC 59.192 42.308 23.15 11.79 42.23 3.20
3298 3958 9.675464 AAAGATAAATCGGACCAAAATAGTACA 57.325 29.630 0.00 0.00 0.00 2.90
3299 3959 9.847224 AAGATAAATCGGACCAAAATAGTACAT 57.153 29.630 0.00 0.00 0.00 2.29
3300 3960 9.273016 AGATAAATCGGACCAAAATAGTACATG 57.727 33.333 0.00 0.00 0.00 3.21
3301 3961 9.268268 GATAAATCGGACCAAAATAGTACATGA 57.732 33.333 0.00 0.00 0.00 3.07
3302 3962 7.931578 AAATCGGACCAAAATAGTACATGAA 57.068 32.000 0.00 0.00 0.00 2.57
3303 3963 6.920569 ATCGGACCAAAATAGTACATGAAC 57.079 37.500 0.00 0.00 0.00 3.18
3304 3964 5.795972 TCGGACCAAAATAGTACATGAACA 58.204 37.500 0.00 0.00 0.00 3.18
3305 3965 5.872617 TCGGACCAAAATAGTACATGAACAG 59.127 40.000 0.00 0.00 0.00 3.16
3306 3966 5.642063 CGGACCAAAATAGTACATGAACAGT 59.358 40.000 0.00 0.00 0.00 3.55
3307 3967 6.814644 CGGACCAAAATAGTACATGAACAGTA 59.185 38.462 0.00 0.00 0.00 2.74
3308 3968 7.332430 CGGACCAAAATAGTACATGAACAGTAA 59.668 37.037 0.00 0.00 0.00 2.24
3309 3969 9.005777 GGACCAAAATAGTACATGAACAGTAAA 57.994 33.333 0.00 0.00 0.00 2.01
3310 3970 9.821662 GACCAAAATAGTACATGAACAGTAAAC 57.178 33.333 0.00 0.00 0.00 2.01
3311 3971 9.344772 ACCAAAATAGTACATGAACAGTAAACA 57.655 29.630 0.00 0.00 0.00 2.83
3325 3985 9.357161 TGAACAGTAAACATTTTTACATACCCT 57.643 29.630 15.08 0.00 46.66 4.34
3326 3986 9.836076 GAACAGTAAACATTTTTACATACCCTC 57.164 33.333 15.08 2.04 46.66 4.30
3327 3987 8.927675 ACAGTAAACATTTTTACATACCCTCA 57.072 30.769 15.08 0.00 46.66 3.86
3328 3988 9.357161 ACAGTAAACATTTTTACATACCCTCAA 57.643 29.630 15.08 0.00 46.66 3.02
3334 3994 9.705290 AACATTTTTACATACCCTCAATTTGTC 57.295 29.630 0.00 0.00 0.00 3.18
3335 3995 9.088987 ACATTTTTACATACCCTCAATTTGTCT 57.911 29.630 0.00 0.00 0.00 3.41
3336 3996 9.927668 CATTTTTACATACCCTCAATTTGTCTT 57.072 29.630 0.00 0.00 0.00 3.01
3357 4017 3.758755 TTTTGCTGAGAGCTCTTCAGA 57.241 42.857 30.86 18.13 42.97 3.27
3358 4018 3.977134 TTTGCTGAGAGCTCTTCAGAT 57.023 42.857 30.86 8.64 42.97 2.90
3359 4019 2.963548 TGCTGAGAGCTCTTCAGATG 57.036 50.000 30.86 16.27 42.97 2.90
3360 4020 2.177734 TGCTGAGAGCTCTTCAGATGT 58.822 47.619 30.86 7.33 42.97 3.06
3361 4021 2.166050 TGCTGAGAGCTCTTCAGATGTC 59.834 50.000 30.86 19.98 42.97 3.06
3362 4022 2.481795 GCTGAGAGCTCTTCAGATGTCC 60.482 54.545 30.86 17.54 38.45 4.02
3363 4023 2.759535 CTGAGAGCTCTTCAGATGTCCA 59.240 50.000 26.28 13.95 33.65 4.02
3364 4024 3.168292 TGAGAGCTCTTCAGATGTCCAA 58.832 45.455 19.36 0.00 26.95 3.53
3365 4025 3.580022 TGAGAGCTCTTCAGATGTCCAAA 59.420 43.478 19.36 0.00 26.95 3.28
3366 4026 4.224594 TGAGAGCTCTTCAGATGTCCAAAT 59.775 41.667 19.36 0.00 26.95 2.32
3367 4027 4.515361 AGAGCTCTTCAGATGTCCAAATG 58.485 43.478 11.45 0.00 0.00 2.32
3368 4028 4.224594 AGAGCTCTTCAGATGTCCAAATGA 59.775 41.667 11.45 0.00 0.00 2.57
3369 4029 5.104444 AGAGCTCTTCAGATGTCCAAATGAT 60.104 40.000 11.45 0.00 0.00 2.45
3370 4030 5.507637 AGCTCTTCAGATGTCCAAATGATT 58.492 37.500 0.00 0.00 0.00 2.57
3371 4031 5.950549 AGCTCTTCAGATGTCCAAATGATTT 59.049 36.000 0.00 0.00 0.00 2.17
3372 4032 6.034591 GCTCTTCAGATGTCCAAATGATTTG 58.965 40.000 10.84 10.84 40.32 2.32
3373 4033 6.127814 GCTCTTCAGATGTCCAAATGATTTGA 60.128 38.462 18.82 0.00 43.26 2.69
3374 4034 7.576287 GCTCTTCAGATGTCCAAATGATTTGAA 60.576 37.037 18.82 0.00 43.26 2.69
3375 4035 8.180706 TCTTCAGATGTCCAAATGATTTGAAA 57.819 30.769 18.82 4.37 43.26 2.69
3376 4036 8.640651 TCTTCAGATGTCCAAATGATTTGAAAA 58.359 29.630 18.82 0.00 43.26 2.29
3377 4037 9.431887 CTTCAGATGTCCAAATGATTTGAAAAT 57.568 29.630 18.82 0.00 43.26 1.82
3378 4038 9.781633 TTCAGATGTCCAAATGATTTGAAAATT 57.218 25.926 18.82 0.50 43.26 1.82
3379 4039 9.210329 TCAGATGTCCAAATGATTTGAAAATTG 57.790 29.630 18.82 9.76 43.26 2.32
3380 4040 9.210329 CAGATGTCCAAATGATTTGAAAATTGA 57.790 29.630 18.82 4.09 43.26 2.57
3381 4041 9.781633 AGATGTCCAAATGATTTGAAAATTGAA 57.218 25.926 18.82 0.07 43.26 2.69
3383 4043 7.863666 TGTCCAAATGATTTGAAAATTGAAGC 58.136 30.769 18.82 0.00 43.26 3.86
3384 4044 7.011189 GTCCAAATGATTTGAAAATTGAAGCG 58.989 34.615 18.82 0.00 43.26 4.68
3385 4045 6.927936 TCCAAATGATTTGAAAATTGAAGCGA 59.072 30.769 18.82 0.89 43.26 4.93
3386 4046 7.440556 TCCAAATGATTTGAAAATTGAAGCGAA 59.559 29.630 18.82 0.00 43.26 4.70
3387 4047 7.531534 CCAAATGATTTGAAAATTGAAGCGAAC 59.468 33.333 18.82 0.00 43.26 3.95
3388 4048 6.710692 ATGATTTGAAAATTGAAGCGAACC 57.289 33.333 0.00 0.00 0.00 3.62
3389 4049 5.841810 TGATTTGAAAATTGAAGCGAACCT 58.158 33.333 0.00 0.00 0.00 3.50
3390 4050 5.920273 TGATTTGAAAATTGAAGCGAACCTC 59.080 36.000 0.00 0.00 0.00 3.85
3391 4051 4.909696 TTGAAAATTGAAGCGAACCTCA 57.090 36.364 0.00 0.00 0.00 3.86
3392 4052 4.223320 TGAAAATTGAAGCGAACCTCAC 57.777 40.909 0.00 0.00 0.00 3.51
3393 4053 2.969443 AAATTGAAGCGAACCTCACG 57.031 45.000 0.00 0.00 0.00 4.35
3402 4062 2.900122 CGAACCTCACGCATCAAATT 57.100 45.000 0.00 0.00 0.00 1.82
3403 4063 2.508867 CGAACCTCACGCATCAAATTG 58.491 47.619 0.00 0.00 0.00 2.32
3404 4064 2.095768 CGAACCTCACGCATCAAATTGT 60.096 45.455 0.00 0.00 0.00 2.71
3405 4065 3.492313 GAACCTCACGCATCAAATTGTC 58.508 45.455 0.00 0.00 0.00 3.18
3406 4066 2.783135 ACCTCACGCATCAAATTGTCT 58.217 42.857 0.00 0.00 0.00 3.41
3407 4067 3.937814 ACCTCACGCATCAAATTGTCTA 58.062 40.909 0.00 0.00 0.00 2.59
3408 4068 3.684788 ACCTCACGCATCAAATTGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
3409 4069 3.063997 CCTCACGCATCAAATTGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
3410 4070 2.670905 TCACGCATCAAATTGTCTACCG 59.329 45.455 0.00 0.00 0.00 4.02
3411 4071 1.396996 ACGCATCAAATTGTCTACCGC 59.603 47.619 0.00 0.00 0.00 5.68
3412 4072 1.396648 CGCATCAAATTGTCTACCGCA 59.603 47.619 0.00 0.00 0.00 5.69
3413 4073 2.785679 GCATCAAATTGTCTACCGCAC 58.214 47.619 0.00 0.00 0.00 5.34
3414 4074 2.161410 GCATCAAATTGTCTACCGCACA 59.839 45.455 0.00 0.00 0.00 4.57
3415 4075 3.365868 GCATCAAATTGTCTACCGCACAA 60.366 43.478 0.00 0.00 38.12 3.33
3416 4076 4.793071 CATCAAATTGTCTACCGCACAAA 58.207 39.130 0.00 0.00 37.30 2.83
3417 4077 4.902443 TCAAATTGTCTACCGCACAAAA 57.098 36.364 0.00 0.00 37.30 2.44
3418 4078 5.250235 TCAAATTGTCTACCGCACAAAAA 57.750 34.783 0.00 0.00 37.30 1.94
3419 4079 5.277825 TCAAATTGTCTACCGCACAAAAAG 58.722 37.500 0.00 0.00 37.30 2.27
3420 4080 4.911514 AATTGTCTACCGCACAAAAAGT 57.088 36.364 0.00 0.00 37.30 2.66
3421 4081 4.911514 ATTGTCTACCGCACAAAAAGTT 57.088 36.364 0.00 0.00 37.30 2.66
3422 4082 4.705337 TTGTCTACCGCACAAAAAGTTT 57.295 36.364 0.00 0.00 30.67 2.66
3423 4083 4.705337 TGTCTACCGCACAAAAAGTTTT 57.295 36.364 0.00 0.00 0.00 2.43
3424 4084 5.061920 TGTCTACCGCACAAAAAGTTTTT 57.938 34.783 7.79 7.79 0.00 1.94
3425 4085 4.859798 TGTCTACCGCACAAAAAGTTTTTG 59.140 37.500 30.49 30.49 35.64 2.44
3426 4086 4.266739 GTCTACCGCACAAAAAGTTTTTGG 59.733 41.667 33.36 25.26 33.92 3.28
3427 4087 3.320673 ACCGCACAAAAAGTTTTTGGA 57.679 38.095 33.36 0.00 33.92 3.53
3428 4088 3.665190 ACCGCACAAAAAGTTTTTGGAA 58.335 36.364 33.36 0.00 33.92 3.53
3429 4089 4.257731 ACCGCACAAAAAGTTTTTGGAAT 58.742 34.783 33.36 17.68 33.92 3.01
3430 4090 4.697828 ACCGCACAAAAAGTTTTTGGAATT 59.302 33.333 33.36 17.38 33.92 2.17
3431 4091 5.182190 ACCGCACAAAAAGTTTTTGGAATTT 59.818 32.000 33.36 17.08 33.92 1.82
3432 4092 6.089476 CCGCACAAAAAGTTTTTGGAATTTT 58.911 32.000 33.36 16.50 33.92 1.82
3433 4093 6.584184 CCGCACAAAAAGTTTTTGGAATTTTT 59.416 30.769 33.36 15.91 35.75 1.94
3480 4140 2.612200 TTTTTCGTCAGAGCGGGTG 58.388 52.632 0.00 0.00 0.00 4.61
3481 4141 1.503818 TTTTTCGTCAGAGCGGGTGC 61.504 55.000 0.00 0.00 43.24 5.01
3482 4142 2.652382 TTTTCGTCAGAGCGGGTGCA 62.652 55.000 0.00 0.00 46.23 4.57
3483 4143 3.573772 TTCGTCAGAGCGGGTGCAG 62.574 63.158 0.00 0.00 46.23 4.41
3484 4144 4.056125 CGTCAGAGCGGGTGCAGA 62.056 66.667 0.00 0.00 46.23 4.26
3485 4145 2.581354 GTCAGAGCGGGTGCAGAT 59.419 61.111 0.00 0.00 46.23 2.90
3486 4146 1.812922 GTCAGAGCGGGTGCAGATG 60.813 63.158 0.00 0.00 46.23 2.90
3487 4147 1.984026 TCAGAGCGGGTGCAGATGA 60.984 57.895 0.00 0.00 46.23 2.92
3488 4148 1.521010 CAGAGCGGGTGCAGATGAG 60.521 63.158 0.00 0.00 46.23 2.90
3489 4149 2.894387 GAGCGGGTGCAGATGAGC 60.894 66.667 0.00 0.00 46.23 4.26
3490 4150 3.382803 GAGCGGGTGCAGATGAGCT 62.383 63.158 0.00 0.00 46.23 4.09
3491 4151 2.894387 GCGGGTGCAGATGAGCTC 60.894 66.667 6.82 6.82 42.15 4.09
3492 4152 2.584418 CGGGTGCAGATGAGCTCG 60.584 66.667 9.64 0.00 34.99 5.03
3493 4153 2.202987 GGGTGCAGATGAGCTCGG 60.203 66.667 9.64 0.00 34.99 4.63
3494 4154 2.202987 GGTGCAGATGAGCTCGGG 60.203 66.667 9.64 0.00 34.99 5.14
3495 4155 2.581354 GTGCAGATGAGCTCGGGT 59.419 61.111 9.64 0.00 34.99 5.28
3496 4156 1.812922 GTGCAGATGAGCTCGGGTG 60.813 63.158 9.64 6.93 34.99 4.61
3497 4157 2.894387 GCAGATGAGCTCGGGTGC 60.894 66.667 15.62 15.62 0.00 5.01
3498 4158 2.580815 CAGATGAGCTCGGGTGCA 59.419 61.111 9.64 0.00 34.99 4.57
3499 4159 1.521010 CAGATGAGCTCGGGTGCAG 60.521 63.158 9.64 0.00 34.99 4.41
3500 4160 1.683707 AGATGAGCTCGGGTGCAGA 60.684 57.895 9.64 0.00 34.99 4.26
3501 4161 1.227205 GATGAGCTCGGGTGCAGAG 60.227 63.158 9.64 0.00 38.68 3.35
3502 4162 1.670949 GATGAGCTCGGGTGCAGAGA 61.671 60.000 9.64 0.00 37.93 3.10
3503 4163 1.047596 ATGAGCTCGGGTGCAGAGAT 61.048 55.000 9.64 0.00 37.93 2.75
3504 4164 1.227205 GAGCTCGGGTGCAGAGATG 60.227 63.158 0.00 0.00 37.93 2.90
3505 4165 2.202987 GCTCGGGTGCAGAGATGG 60.203 66.667 5.67 0.00 37.93 3.51
3506 4166 2.725312 GCTCGGGTGCAGAGATGGA 61.725 63.158 5.67 0.00 37.93 3.41
3507 4167 2.037620 GCTCGGGTGCAGAGATGGAT 62.038 60.000 5.67 0.00 37.93 3.41
3508 4168 0.467384 CTCGGGTGCAGAGATGGATT 59.533 55.000 0.00 0.00 37.93 3.01
3509 4169 0.911769 TCGGGTGCAGAGATGGATTT 59.088 50.000 0.00 0.00 0.00 2.17
3510 4170 1.281867 TCGGGTGCAGAGATGGATTTT 59.718 47.619 0.00 0.00 0.00 1.82
3511 4171 1.672881 CGGGTGCAGAGATGGATTTTC 59.327 52.381 0.00 0.00 0.00 2.29
3512 4172 1.672881 GGGTGCAGAGATGGATTTTCG 59.327 52.381 0.00 0.00 0.00 3.46
3513 4173 1.672881 GGTGCAGAGATGGATTTTCGG 59.327 52.381 0.00 0.00 0.00 4.30
3514 4174 2.359900 GTGCAGAGATGGATTTTCGGT 58.640 47.619 0.00 0.00 0.00 4.69
3522 4182 1.078708 GGATTTTCGGTGGCGGAGA 60.079 57.895 0.00 0.00 0.00 3.71
3557 4217 1.301953 GTGGGGCGGACGTTAAAGT 60.302 57.895 0.00 0.00 0.00 2.66
3558 4218 0.037419 GTGGGGCGGACGTTAAAGTA 60.037 55.000 0.00 0.00 0.00 2.24
3559 4219 0.903942 TGGGGCGGACGTTAAAGTAT 59.096 50.000 0.00 0.00 0.00 2.12
3561 4221 2.699846 TGGGGCGGACGTTAAAGTATAT 59.300 45.455 0.00 0.00 0.00 0.86
3563 4223 4.343526 TGGGGCGGACGTTAAAGTATATAA 59.656 41.667 0.00 0.00 0.00 0.98
3564 4224 4.925646 GGGGCGGACGTTAAAGTATATAAG 59.074 45.833 0.00 0.00 0.00 1.73
3565 4225 5.278957 GGGGCGGACGTTAAAGTATATAAGA 60.279 44.000 0.00 0.00 0.00 2.10
3566 4226 6.215845 GGGCGGACGTTAAAGTATATAAGAA 58.784 40.000 0.00 0.00 0.00 2.52
3567 4227 6.701400 GGGCGGACGTTAAAGTATATAAGAAA 59.299 38.462 0.00 0.00 0.00 2.52
3568 4228 7.224557 GGGCGGACGTTAAAGTATATAAGAAAA 59.775 37.037 0.00 0.00 0.00 2.29
3569 4229 8.768019 GGCGGACGTTAAAGTATATAAGAAAAT 58.232 33.333 0.00 0.00 0.00 1.82
3722 5416 1.904287 TAATGAAGCTTTGGTGCCGT 58.096 45.000 0.00 0.00 0.00 5.68
3734 5428 0.035739 GGTGCCGTCTAGAAAACCCA 59.964 55.000 0.00 0.00 0.00 4.51
3737 5431 1.001633 TGCCGTCTAGAAAACCCAGTC 59.998 52.381 0.00 0.00 0.00 3.51
3753 5447 2.026822 CCAGTCAATGGCAGTACCTTCT 60.027 50.000 0.00 0.00 43.83 2.85
3766 5460 6.863645 GGCAGTACCTTCTTTGAAAAATCTTC 59.136 38.462 0.00 0.00 34.51 2.87
3790 5484 9.730705 TTCTGTAATTGAATCAAGATCAAGACT 57.269 29.630 1.10 0.00 39.92 3.24
3799 5493 9.730705 TGAATCAAGATCAAGACTTTTGTATCT 57.269 29.630 0.00 0.00 0.00 1.98
3803 5497 8.811017 TCAAGATCAAGACTTTTGTATCTCTCT 58.189 33.333 0.00 0.00 0.00 3.10
3829 8234 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3830 8235 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3831 8236 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3832 8237 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3833 8238 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3834 8239 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3835 8240 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3836 8241 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3837 8242 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3838 8243 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3839 8244 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3840 8245 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3841 8246 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3842 8247 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3843 8248 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3844 8249 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3845 8250 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
3883 8288 8.958119 ATCGATTAATTAAGCTAACTGTTGGA 57.042 30.769 11.41 0.00 0.00 3.53
3884 8289 8.193250 TCGATTAATTAAGCTAACTGTTGGAC 57.807 34.615 11.41 0.00 0.00 4.02
3885 8290 7.820386 TCGATTAATTAAGCTAACTGTTGGACA 59.180 33.333 11.41 0.00 0.00 4.02
3886 8291 8.612619 CGATTAATTAAGCTAACTGTTGGACAT 58.387 33.333 11.41 0.00 0.00 3.06
3887 8292 9.937175 GATTAATTAAGCTAACTGTTGGACATC 57.063 33.333 8.17 0.00 0.00 3.06
3888 8293 8.856153 TTAATTAAGCTAACTGTTGGACATCA 57.144 30.769 8.17 0.00 0.00 3.07
3889 8294 7.944729 AATTAAGCTAACTGTTGGACATCAT 57.055 32.000 8.17 0.00 0.00 2.45
3890 8295 6.741992 TTAAGCTAACTGTTGGACATCATG 57.258 37.500 8.17 0.00 0.00 3.07
3902 8307 2.294233 GGACATCATGTTGTGCAACTGT 59.706 45.455 19.89 10.86 41.67 3.55
3916 8321 4.208047 GTGCAACTGTATCTCGATGATGTC 59.792 45.833 0.00 2.98 36.65 3.06
3938 8343 6.155827 GTCAATTGCTAAGTTATTTGTGCCA 58.844 36.000 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 210 2.109387 TACCCAACGCGTTGCTGT 59.891 55.556 39.42 35.66 39.16 4.40
247 254 3.562182 CCTTGGTGAGGTAAAAGGTTGT 58.438 45.455 0.00 0.00 40.95 3.32
423 535 5.499139 TGCGGCAGGAATTTAAAGATTAG 57.501 39.130 0.00 0.00 0.00 1.73
503 615 7.939782 TGCTTGTGATGAAGTCTTTGAAATAA 58.060 30.769 0.00 0.00 0.00 1.40
518 630 3.120234 TGCTATTCGTGTTGCTTGTGATG 60.120 43.478 0.00 0.00 0.00 3.07
523 635 2.651703 CGTTTGCTATTCGTGTTGCTTG 59.348 45.455 0.00 0.00 0.00 4.01
532 644 6.628856 CCAATCTACATTTCGTTTGCTATTCG 59.371 38.462 0.00 0.00 0.00 3.34
544 657 7.974675 TGAATCGAAAGTCCAATCTACATTTC 58.025 34.615 0.00 0.00 0.00 2.17
549 662 8.029642 TCTTTTGAATCGAAAGTCCAATCTAC 57.970 34.615 19.27 0.00 36.52 2.59
613 726 1.533711 CCACCCATCCCATCTCACC 59.466 63.158 0.00 0.00 0.00 4.02
645 758 5.633655 TGGTAGTACAACTTTTGGGAGAA 57.366 39.130 2.06 0.00 34.12 2.87
705 818 9.261180 GTGATTAGAGCTTAATTAGTGCATGTA 57.739 33.333 12.82 0.00 0.00 2.29
706 819 7.770433 TGTGATTAGAGCTTAATTAGTGCATGT 59.230 33.333 12.82 0.00 0.00 3.21
707 820 8.146479 TGTGATTAGAGCTTAATTAGTGCATG 57.854 34.615 12.82 0.00 0.00 4.06
765 878 5.063944 CCCTATTTTGCTATAGCGCACTATG 59.936 44.000 19.55 6.43 45.83 2.23
770 883 2.151202 GCCCTATTTTGCTATAGCGCA 58.849 47.619 19.55 6.29 45.83 6.09
849 962 7.923878 TGTTCGAGATGATTTGTATTTCCGATA 59.076 33.333 0.00 0.00 0.00 2.92
902 1232 7.027760 CGTTATGTCTGAACTAAAGCACTCTA 58.972 38.462 0.00 0.00 0.00 2.43
935 1299 4.859798 GCGCTATAGCACCACTAATAGAAG 59.140 45.833 23.99 4.07 42.21 2.85
971 1335 2.022195 CTGATTGGGCCAAGATCACTG 58.978 52.381 25.16 9.53 0.00 3.66
1084 1448 4.083484 CGGTAACATTTTGGACAGGAACTC 60.083 45.833 0.00 0.00 34.60 3.01
1111 1475 1.910688 GCAACGAGCACTAGGACTAC 58.089 55.000 0.00 0.00 44.79 2.73
1350 1714 1.991121 TGGACCAGAGAACGTAGTGT 58.009 50.000 0.00 0.00 45.00 3.55
1665 2029 4.569180 CATGAAGGCGGGGGCGAT 62.569 66.667 0.00 0.00 0.00 4.58
1877 2241 2.657944 CGCTGCAGCTCCTCGATC 60.658 66.667 34.22 4.61 39.32 3.69
1988 2353 8.416329 ACCATGAAATGCACTTAGATATTTTCC 58.584 33.333 0.00 0.00 44.97 3.13
2064 2695 5.310451 TGTACTTGCTCGGAAAATACCTTT 58.690 37.500 0.00 0.00 0.00 3.11
2065 2696 4.901868 TGTACTTGCTCGGAAAATACCTT 58.098 39.130 0.00 0.00 0.00 3.50
2281 2912 0.997226 CGTCGATAATCGTCTGGGCG 60.997 60.000 0.00 0.00 41.35 6.13
2293 2924 1.460504 AGGTCTTGCACTCGTCGATA 58.539 50.000 0.00 0.00 0.00 2.92
2296 2927 0.039074 AGAAGGTCTTGCACTCGTCG 60.039 55.000 0.00 0.00 0.00 5.12
2521 3152 2.292016 TCCACGTGTTAAACATTGGCAG 59.708 45.455 15.65 0.00 35.34 4.85
2524 3155 3.241701 GCATCCACGTGTTAAACATTGG 58.758 45.455 15.65 0.00 36.18 3.16
3007 3651 8.728088 AAATAAACACTCAAAATTGCGAGTAG 57.272 30.769 9.13 7.26 40.50 2.57
3102 3762 1.296056 CCAAAACGCCCTACTCCACG 61.296 60.000 0.00 0.00 0.00 4.94
3103 3763 0.250597 ACCAAAACGCCCTACTCCAC 60.251 55.000 0.00 0.00 0.00 4.02
3104 3764 0.250553 CACCAAAACGCCCTACTCCA 60.251 55.000 0.00 0.00 0.00 3.86
3105 3765 1.583495 GCACCAAAACGCCCTACTCC 61.583 60.000 0.00 0.00 0.00 3.85
3106 3766 1.583495 GGCACCAAAACGCCCTACTC 61.583 60.000 0.00 0.00 42.82 2.59
3107 3767 1.602605 GGCACCAAAACGCCCTACT 60.603 57.895 0.00 0.00 42.82 2.57
3108 3768 2.959372 GGCACCAAAACGCCCTAC 59.041 61.111 0.00 0.00 42.82 3.18
3121 3781 0.462759 GTGTAGATGAGCCTGGGCAC 60.463 60.000 14.39 8.23 44.88 5.01
3122 3782 1.626356 GGTGTAGATGAGCCTGGGCA 61.626 60.000 14.39 0.00 44.88 5.36
3123 3783 1.147153 GGTGTAGATGAGCCTGGGC 59.853 63.158 3.00 3.00 42.33 5.36
3124 3784 1.135094 ATGGTGTAGATGAGCCTGGG 58.865 55.000 0.00 0.00 0.00 4.45
3125 3785 4.130118 GTTTATGGTGTAGATGAGCCTGG 58.870 47.826 0.00 0.00 0.00 4.45
3126 3786 4.769688 TGTTTATGGTGTAGATGAGCCTG 58.230 43.478 0.00 0.00 0.00 4.85
3127 3787 5.435686 TTGTTTATGGTGTAGATGAGCCT 57.564 39.130 0.00 0.00 0.00 4.58
3128 3788 6.511767 CGAATTGTTTATGGTGTAGATGAGCC 60.512 42.308 0.00 0.00 0.00 4.70
3129 3789 6.037172 ACGAATTGTTTATGGTGTAGATGAGC 59.963 38.462 0.00 0.00 0.00 4.26
3130 3790 7.539712 ACGAATTGTTTATGGTGTAGATGAG 57.460 36.000 0.00 0.00 0.00 2.90
3131 3791 9.438228 TTTACGAATTGTTTATGGTGTAGATGA 57.562 29.630 0.00 0.00 0.00 2.92
3175 3835 9.561270 CCGTACAAATTTTGTTTTGGAAATTTT 57.439 25.926 19.15 0.00 42.22 1.82
3176 3836 8.731605 ACCGTACAAATTTTGTTTTGGAAATTT 58.268 25.926 19.15 0.00 42.22 1.82
3177 3837 8.270080 ACCGTACAAATTTTGTTTTGGAAATT 57.730 26.923 19.15 2.31 42.22 1.82
3178 3838 7.851387 ACCGTACAAATTTTGTTTTGGAAAT 57.149 28.000 19.15 2.60 42.22 2.17
3179 3839 8.767478 TTACCGTACAAATTTTGTTTTGGAAA 57.233 26.923 19.15 10.00 42.22 3.13
3180 3840 8.767478 TTTACCGTACAAATTTTGTTTTGGAA 57.233 26.923 19.15 8.62 42.22 3.53
3181 3841 8.943909 ATTTACCGTACAAATTTTGTTTTGGA 57.056 26.923 19.15 3.28 42.22 3.53
3191 3851 9.015577 CGCATCAAATTATTTACCGTACAAATT 57.984 29.630 0.00 0.00 0.00 1.82
3192 3852 8.185505 ACGCATCAAATTATTTACCGTACAAAT 58.814 29.630 0.00 0.00 0.00 2.32
3193 3853 7.482113 CACGCATCAAATTATTTACCGTACAAA 59.518 33.333 0.00 0.00 0.00 2.83
3194 3854 6.962116 CACGCATCAAATTATTTACCGTACAA 59.038 34.615 0.00 0.00 0.00 2.41
3195 3855 6.313164 TCACGCATCAAATTATTTACCGTACA 59.687 34.615 0.00 0.00 0.00 2.90
3196 3856 6.707711 TCACGCATCAAATTATTTACCGTAC 58.292 36.000 0.00 0.00 0.00 3.67
3197 3857 6.018588 CCTCACGCATCAAATTATTTACCGTA 60.019 38.462 0.00 0.00 0.00 4.02
3198 3858 5.220777 CCTCACGCATCAAATTATTTACCGT 60.221 40.000 0.00 0.00 0.00 4.83
3199 3859 5.204833 CCTCACGCATCAAATTATTTACCG 58.795 41.667 0.00 0.00 0.00 4.02
3200 3860 4.976116 GCCTCACGCATCAAATTATTTACC 59.024 41.667 0.00 0.00 37.47 2.85
3201 3861 4.976116 GGCCTCACGCATCAAATTATTTAC 59.024 41.667 0.00 0.00 40.31 2.01
3202 3862 4.037446 GGGCCTCACGCATCAAATTATTTA 59.963 41.667 0.84 0.00 40.31 1.40
3203 3863 3.181476 GGGCCTCACGCATCAAATTATTT 60.181 43.478 0.84 0.00 40.31 1.40
3204 3864 2.362077 GGGCCTCACGCATCAAATTATT 59.638 45.455 0.84 0.00 40.31 1.40
3205 3865 1.956477 GGGCCTCACGCATCAAATTAT 59.044 47.619 0.84 0.00 40.31 1.28
3206 3866 1.388547 GGGCCTCACGCATCAAATTA 58.611 50.000 0.84 0.00 40.31 1.40
3207 3867 1.656818 CGGGCCTCACGCATCAAATT 61.657 55.000 0.84 0.00 40.31 1.82
3208 3868 2.114670 CGGGCCTCACGCATCAAAT 61.115 57.895 0.84 0.00 40.31 2.32
3209 3869 2.745884 CGGGCCTCACGCATCAAA 60.746 61.111 0.84 0.00 40.31 2.69
3216 3876 3.976701 ATTTGGAGCGGGCCTCACG 62.977 63.158 0.84 0.00 42.62 4.35
3217 3877 1.250840 AAATTTGGAGCGGGCCTCAC 61.251 55.000 0.84 0.00 42.62 3.51
3218 3878 0.965363 GAAATTTGGAGCGGGCCTCA 60.965 55.000 0.84 0.00 42.62 3.86
3219 3879 0.965363 TGAAATTTGGAGCGGGCCTC 60.965 55.000 0.84 0.00 39.98 4.70
3220 3880 0.541764 TTGAAATTTGGAGCGGGCCT 60.542 50.000 0.84 0.00 0.00 5.19
3221 3881 0.108662 CTTGAAATTTGGAGCGGGCC 60.109 55.000 0.00 0.00 0.00 5.80
3222 3882 0.603065 ACTTGAAATTTGGAGCGGGC 59.397 50.000 0.00 0.00 0.00 6.13
3223 3883 1.885887 TGACTTGAAATTTGGAGCGGG 59.114 47.619 0.00 0.00 0.00 6.13
3224 3884 3.855689 ATGACTTGAAATTTGGAGCGG 57.144 42.857 0.00 0.00 0.00 5.52
3225 3885 6.611381 TCTAAATGACTTGAAATTTGGAGCG 58.389 36.000 0.00 0.00 30.96 5.03
3233 3893 9.842775 TGCTCAGATATCTAAATGACTTGAAAT 57.157 29.630 4.54 0.00 0.00 2.17
3234 3894 9.322773 CTGCTCAGATATCTAAATGACTTGAAA 57.677 33.333 4.54 0.00 0.00 2.69
3235 3895 7.440556 GCTGCTCAGATATCTAAATGACTTGAA 59.559 37.037 4.54 0.00 0.00 2.69
3236 3896 6.927936 GCTGCTCAGATATCTAAATGACTTGA 59.072 38.462 4.54 0.00 0.00 3.02
3237 3897 6.930164 AGCTGCTCAGATATCTAAATGACTTG 59.070 38.462 4.54 0.00 0.00 3.16
3238 3898 7.015487 AGAGCTGCTCAGATATCTAAATGACTT 59.985 37.037 29.49 1.14 32.06 3.01
3239 3899 6.494491 AGAGCTGCTCAGATATCTAAATGACT 59.506 38.462 29.49 1.49 32.06 3.41
3240 3900 6.690530 AGAGCTGCTCAGATATCTAAATGAC 58.309 40.000 29.49 0.00 32.06 3.06
3241 3901 6.914654 AGAGCTGCTCAGATATCTAAATGA 57.085 37.500 29.49 0.00 32.06 2.57
3272 3932 9.675464 TGTACTATTTTGGTCCGATTTATCTTT 57.325 29.630 0.00 0.00 0.00 2.52
3273 3933 9.847224 ATGTACTATTTTGGTCCGATTTATCTT 57.153 29.630 0.00 0.00 0.00 2.40
3274 3934 9.273016 CATGTACTATTTTGGTCCGATTTATCT 57.727 33.333 0.00 0.00 0.00 1.98
3275 3935 9.268268 TCATGTACTATTTTGGTCCGATTTATC 57.732 33.333 0.00 0.00 0.00 1.75
3276 3936 9.621629 TTCATGTACTATTTTGGTCCGATTTAT 57.378 29.630 0.00 0.00 0.00 1.40
3277 3937 8.885722 GTTCATGTACTATTTTGGTCCGATTTA 58.114 33.333 0.00 0.00 0.00 1.40
3278 3938 7.392113 TGTTCATGTACTATTTTGGTCCGATTT 59.608 33.333 4.01 0.00 0.00 2.17
3279 3939 6.882140 TGTTCATGTACTATTTTGGTCCGATT 59.118 34.615 4.01 0.00 0.00 3.34
3280 3940 6.411376 TGTTCATGTACTATTTTGGTCCGAT 58.589 36.000 4.01 0.00 0.00 4.18
3281 3941 5.795972 TGTTCATGTACTATTTTGGTCCGA 58.204 37.500 4.01 0.00 0.00 4.55
3282 3942 5.642063 ACTGTTCATGTACTATTTTGGTCCG 59.358 40.000 4.01 0.00 0.00 4.79
3283 3943 8.556213 TTACTGTTCATGTACTATTTTGGTCC 57.444 34.615 4.01 0.00 0.00 4.46
3284 3944 9.821662 GTTTACTGTTCATGTACTATTTTGGTC 57.178 33.333 4.01 0.00 0.00 4.02
3285 3945 9.344772 TGTTTACTGTTCATGTACTATTTTGGT 57.655 29.630 4.01 0.00 0.00 3.67
3299 3959 9.357161 AGGGTATGTAAAAATGTTTACTGTTCA 57.643 29.630 17.45 0.03 46.29 3.18
3300 3960 9.836076 GAGGGTATGTAAAAATGTTTACTGTTC 57.164 33.333 17.45 6.40 46.29 3.18
3301 3961 9.357161 TGAGGGTATGTAAAAATGTTTACTGTT 57.643 29.630 17.45 7.09 46.29 3.16
3302 3962 8.927675 TGAGGGTATGTAAAAATGTTTACTGT 57.072 30.769 17.45 10.01 46.29 3.55
3308 3968 9.705290 GACAAATTGAGGGTATGTAAAAATGTT 57.295 29.630 0.00 0.00 0.00 2.71
3309 3969 9.088987 AGACAAATTGAGGGTATGTAAAAATGT 57.911 29.630 0.00 0.00 0.00 2.71
3310 3970 9.927668 AAGACAAATTGAGGGTATGTAAAAATG 57.072 29.630 0.00 0.00 0.00 2.32
3336 3996 4.077300 TCTGAAGAGCTCTCAGCAAAAA 57.923 40.909 25.90 13.75 45.56 1.94
3337 3997 3.758755 TCTGAAGAGCTCTCAGCAAAA 57.241 42.857 25.90 14.01 45.56 2.44
3338 3998 3.007723 ACATCTGAAGAGCTCTCAGCAAA 59.992 43.478 25.90 16.15 45.56 3.68
3339 3999 2.566279 ACATCTGAAGAGCTCTCAGCAA 59.434 45.455 25.90 16.64 45.56 3.91
3340 4000 2.166050 GACATCTGAAGAGCTCTCAGCA 59.834 50.000 25.90 19.50 45.56 4.41
3341 4001 2.481795 GGACATCTGAAGAGCTCTCAGC 60.482 54.545 25.90 16.80 42.84 4.26
3342 4002 2.759535 TGGACATCTGAAGAGCTCTCAG 59.240 50.000 25.26 25.26 0.00 3.35
3343 4003 2.812658 TGGACATCTGAAGAGCTCTCA 58.187 47.619 18.55 15.16 0.00 3.27
3344 4004 3.883830 TTGGACATCTGAAGAGCTCTC 57.116 47.619 18.55 11.21 0.00 3.20
3345 4005 4.224594 TCATTTGGACATCTGAAGAGCTCT 59.775 41.667 11.45 11.45 0.00 4.09
3346 4006 4.511527 TCATTTGGACATCTGAAGAGCTC 58.488 43.478 5.27 5.27 0.00 4.09
3347 4007 4.564782 TCATTTGGACATCTGAAGAGCT 57.435 40.909 0.00 0.00 0.00 4.09
3348 4008 5.831702 AATCATTTGGACATCTGAAGAGC 57.168 39.130 0.00 0.00 0.00 4.09
3349 4009 7.387119 TCAAATCATTTGGACATCTGAAGAG 57.613 36.000 10.30 0.00 40.98 2.85
3350 4010 7.764141 TTCAAATCATTTGGACATCTGAAGA 57.236 32.000 10.30 0.00 40.98 2.87
3351 4011 8.821147 TTTTCAAATCATTTGGACATCTGAAG 57.179 30.769 10.30 0.00 40.98 3.02
3352 4012 9.781633 AATTTTCAAATCATTTGGACATCTGAA 57.218 25.926 10.30 0.00 40.98 3.02
3353 4013 9.210329 CAATTTTCAAATCATTTGGACATCTGA 57.790 29.630 10.30 0.00 40.98 3.27
3354 4014 9.210329 TCAATTTTCAAATCATTTGGACATCTG 57.790 29.630 10.30 2.83 40.98 2.90
3355 4015 9.781633 TTCAATTTTCAAATCATTTGGACATCT 57.218 25.926 10.30 0.00 40.98 2.90
3357 4017 8.508875 GCTTCAATTTTCAAATCATTTGGACAT 58.491 29.630 10.30 0.00 40.98 3.06
3358 4018 7.307278 CGCTTCAATTTTCAAATCATTTGGACA 60.307 33.333 10.30 0.00 40.98 4.02
3359 4019 7.011189 CGCTTCAATTTTCAAATCATTTGGAC 58.989 34.615 10.30 0.00 40.98 4.02
3360 4020 6.927936 TCGCTTCAATTTTCAAATCATTTGGA 59.072 30.769 10.30 0.00 40.98 3.53
3361 4021 7.119605 TCGCTTCAATTTTCAAATCATTTGG 57.880 32.000 10.30 0.00 40.98 3.28
3362 4022 7.531534 GGTTCGCTTCAATTTTCAAATCATTTG 59.468 33.333 3.46 3.46 41.96 2.32
3363 4023 7.442062 AGGTTCGCTTCAATTTTCAAATCATTT 59.558 29.630 0.00 0.00 0.00 2.32
3364 4024 6.930722 AGGTTCGCTTCAATTTTCAAATCATT 59.069 30.769 0.00 0.00 0.00 2.57
3365 4025 6.458210 AGGTTCGCTTCAATTTTCAAATCAT 58.542 32.000 0.00 0.00 0.00 2.45
3366 4026 5.841810 AGGTTCGCTTCAATTTTCAAATCA 58.158 33.333 0.00 0.00 0.00 2.57
3367 4027 5.920273 TGAGGTTCGCTTCAATTTTCAAATC 59.080 36.000 0.00 0.00 29.85 2.17
3368 4028 5.691754 GTGAGGTTCGCTTCAATTTTCAAAT 59.308 36.000 0.00 0.00 34.92 2.32
3369 4029 5.040635 GTGAGGTTCGCTTCAATTTTCAAA 58.959 37.500 0.00 0.00 34.92 2.69
3370 4030 4.606961 GTGAGGTTCGCTTCAATTTTCAA 58.393 39.130 0.00 0.00 34.92 2.69
3371 4031 3.303725 CGTGAGGTTCGCTTCAATTTTCA 60.304 43.478 0.00 0.00 34.92 2.69
3372 4032 3.226347 CGTGAGGTTCGCTTCAATTTTC 58.774 45.455 0.00 0.00 34.92 2.29
3373 4033 3.268013 CGTGAGGTTCGCTTCAATTTT 57.732 42.857 0.00 0.00 34.92 1.82
3374 4034 2.969443 CGTGAGGTTCGCTTCAATTT 57.031 45.000 0.00 0.00 34.92 1.82
3383 4043 2.095768 ACAATTTGATGCGTGAGGTTCG 60.096 45.455 2.79 0.00 0.00 3.95
3384 4044 3.189287 AGACAATTTGATGCGTGAGGTTC 59.811 43.478 2.79 0.00 0.00 3.62
3385 4045 3.149196 AGACAATTTGATGCGTGAGGTT 58.851 40.909 2.79 0.00 0.00 3.50
3386 4046 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
3387 4047 3.063997 GGTAGACAATTTGATGCGTGAGG 59.936 47.826 2.79 0.00 0.00 3.86
3388 4048 3.242091 CGGTAGACAATTTGATGCGTGAG 60.242 47.826 2.79 0.00 0.00 3.51
3389 4049 2.670905 CGGTAGACAATTTGATGCGTGA 59.329 45.455 2.79 0.00 0.00 4.35
3390 4050 2.787723 GCGGTAGACAATTTGATGCGTG 60.788 50.000 2.79 0.00 0.00 5.34
3391 4051 1.396996 GCGGTAGACAATTTGATGCGT 59.603 47.619 2.79 0.00 0.00 5.24
3392 4052 1.396648 TGCGGTAGACAATTTGATGCG 59.603 47.619 2.79 0.00 0.00 4.73
3393 4053 2.161410 TGTGCGGTAGACAATTTGATGC 59.839 45.455 2.79 0.00 0.00 3.91
3394 4054 4.418013 TTGTGCGGTAGACAATTTGATG 57.582 40.909 2.79 0.00 0.00 3.07
3395 4055 5.446143 TTTTGTGCGGTAGACAATTTGAT 57.554 34.783 2.79 0.00 33.41 2.57
3396 4056 4.902443 TTTTGTGCGGTAGACAATTTGA 57.098 36.364 2.79 0.00 33.41 2.69
3397 4057 5.040635 ACTTTTTGTGCGGTAGACAATTTG 58.959 37.500 0.00 0.00 33.41 2.32
3398 4058 5.257082 ACTTTTTGTGCGGTAGACAATTT 57.743 34.783 0.00 0.00 33.41 1.82
3399 4059 4.911514 ACTTTTTGTGCGGTAGACAATT 57.088 36.364 0.00 0.00 33.41 2.32
3400 4060 4.911514 AACTTTTTGTGCGGTAGACAAT 57.088 36.364 0.00 0.00 33.41 2.71
3401 4061 4.705337 AAACTTTTTGTGCGGTAGACAA 57.295 36.364 0.00 0.00 0.00 3.18
3402 4062 4.705337 AAAACTTTTTGTGCGGTAGACA 57.295 36.364 0.00 0.00 0.00 3.41
3403 4063 4.266739 CCAAAAACTTTTTGTGCGGTAGAC 59.733 41.667 20.55 0.00 0.00 2.59
3404 4064 4.158025 TCCAAAAACTTTTTGTGCGGTAGA 59.842 37.500 20.55 9.70 0.00 2.59
3405 4065 4.425520 TCCAAAAACTTTTTGTGCGGTAG 58.574 39.130 20.55 7.98 0.00 3.18
3406 4066 4.451629 TCCAAAAACTTTTTGTGCGGTA 57.548 36.364 20.55 2.48 0.00 4.02
3407 4067 3.320673 TCCAAAAACTTTTTGTGCGGT 57.679 38.095 20.55 0.00 0.00 5.68
3408 4068 4.873768 ATTCCAAAAACTTTTTGTGCGG 57.126 36.364 20.55 9.48 0.00 5.69
3409 4069 7.559835 AAAAATTCCAAAAACTTTTTGTGCG 57.440 28.000 20.55 9.63 31.54 5.34
3462 4122 1.503818 GCACCCGCTCTGACGAAAAA 61.504 55.000 0.00 0.00 34.06 1.94
3463 4123 1.959226 GCACCCGCTCTGACGAAAA 60.959 57.895 0.00 0.00 34.06 2.29
3464 4124 2.357034 GCACCCGCTCTGACGAAA 60.357 61.111 0.00 0.00 34.06 3.46
3465 4125 3.573772 CTGCACCCGCTCTGACGAA 62.574 63.158 0.00 0.00 39.64 3.85
3466 4126 4.056125 CTGCACCCGCTCTGACGA 62.056 66.667 0.00 0.00 39.64 4.20
3467 4127 3.362399 ATCTGCACCCGCTCTGACG 62.362 63.158 0.00 0.00 39.64 4.35
3468 4128 1.812922 CATCTGCACCCGCTCTGAC 60.813 63.158 0.00 0.00 39.64 3.51
3469 4129 1.953231 CTCATCTGCACCCGCTCTGA 61.953 60.000 0.00 0.00 39.64 3.27
3470 4130 1.521010 CTCATCTGCACCCGCTCTG 60.521 63.158 0.00 0.00 39.64 3.35
3471 4131 2.898738 CTCATCTGCACCCGCTCT 59.101 61.111 0.00 0.00 39.64 4.09
3472 4132 2.894387 GCTCATCTGCACCCGCTC 60.894 66.667 0.00 0.00 39.64 5.03
3473 4133 3.382803 GAGCTCATCTGCACCCGCT 62.383 63.158 9.40 0.00 39.64 5.52
3474 4134 2.894387 GAGCTCATCTGCACCCGC 60.894 66.667 9.40 0.00 39.24 6.13
3475 4135 2.584418 CGAGCTCATCTGCACCCG 60.584 66.667 15.40 0.00 34.99 5.28
3476 4136 2.202987 CCGAGCTCATCTGCACCC 60.203 66.667 15.40 0.00 34.99 4.61
3477 4137 2.202987 CCCGAGCTCATCTGCACC 60.203 66.667 15.40 0.00 34.99 5.01
3478 4138 1.812922 CACCCGAGCTCATCTGCAC 60.813 63.158 15.40 0.00 34.99 4.57
3479 4139 2.580815 CACCCGAGCTCATCTGCA 59.419 61.111 15.40 0.00 34.99 4.41
3480 4140 2.894387 GCACCCGAGCTCATCTGC 60.894 66.667 15.40 12.21 0.00 4.26
3481 4141 1.521010 CTGCACCCGAGCTCATCTG 60.521 63.158 15.40 5.86 34.99 2.90
3482 4142 1.674764 CTCTGCACCCGAGCTCATCT 61.675 60.000 15.40 0.00 34.99 2.90
3483 4143 1.227205 CTCTGCACCCGAGCTCATC 60.227 63.158 15.40 0.00 34.99 2.92
3484 4144 1.047596 ATCTCTGCACCCGAGCTCAT 61.048 55.000 15.40 0.00 34.99 2.90
3485 4145 1.683707 ATCTCTGCACCCGAGCTCA 60.684 57.895 15.40 0.00 34.99 4.26
3486 4146 1.227205 CATCTCTGCACCCGAGCTC 60.227 63.158 2.73 2.73 34.99 4.09
3487 4147 2.729479 CCATCTCTGCACCCGAGCT 61.729 63.158 0.00 0.00 34.99 4.09
3488 4148 2.037620 ATCCATCTCTGCACCCGAGC 62.038 60.000 0.00 0.00 0.00 5.03
3489 4149 0.467384 AATCCATCTCTGCACCCGAG 59.533 55.000 0.00 0.00 0.00 4.63
3490 4150 0.911769 AAATCCATCTCTGCACCCGA 59.088 50.000 0.00 0.00 0.00 5.14
3491 4151 1.672881 GAAAATCCATCTCTGCACCCG 59.327 52.381 0.00 0.00 0.00 5.28
3492 4152 1.672881 CGAAAATCCATCTCTGCACCC 59.327 52.381 0.00 0.00 0.00 4.61
3493 4153 1.672881 CCGAAAATCCATCTCTGCACC 59.327 52.381 0.00 0.00 0.00 5.01
3494 4154 2.096496 CACCGAAAATCCATCTCTGCAC 59.904 50.000 0.00 0.00 0.00 4.57
3495 4155 2.358957 CACCGAAAATCCATCTCTGCA 58.641 47.619 0.00 0.00 0.00 4.41
3496 4156 1.672881 CCACCGAAAATCCATCTCTGC 59.327 52.381 0.00 0.00 0.00 4.26
3497 4157 1.672881 GCCACCGAAAATCCATCTCTG 59.327 52.381 0.00 0.00 0.00 3.35
3498 4158 1.743772 CGCCACCGAAAATCCATCTCT 60.744 52.381 0.00 0.00 36.29 3.10
3499 4159 0.657840 CGCCACCGAAAATCCATCTC 59.342 55.000 0.00 0.00 36.29 2.75
3500 4160 0.748005 CCGCCACCGAAAATCCATCT 60.748 55.000 0.00 0.00 36.29 2.90
3501 4161 0.746563 TCCGCCACCGAAAATCCATC 60.747 55.000 0.00 0.00 36.29 3.51
3502 4162 0.748005 CTCCGCCACCGAAAATCCAT 60.748 55.000 0.00 0.00 36.29 3.41
3503 4163 1.376683 CTCCGCCACCGAAAATCCA 60.377 57.895 0.00 0.00 36.29 3.41
3504 4164 0.675522 TTCTCCGCCACCGAAAATCC 60.676 55.000 0.00 0.00 36.29 3.01
3505 4165 0.446616 GTTCTCCGCCACCGAAAATC 59.553 55.000 0.00 0.00 36.29 2.17
3506 4166 0.250553 TGTTCTCCGCCACCGAAAAT 60.251 50.000 0.00 0.00 36.29 1.82
3507 4167 0.464013 TTGTTCTCCGCCACCGAAAA 60.464 50.000 0.00 0.00 36.29 2.29
3508 4168 0.464013 TTTGTTCTCCGCCACCGAAA 60.464 50.000 0.00 0.00 36.29 3.46
3509 4169 0.464013 TTTTGTTCTCCGCCACCGAA 60.464 50.000 0.00 0.00 36.29 4.30
3510 4170 0.464013 TTTTTGTTCTCCGCCACCGA 60.464 50.000 0.00 0.00 36.29 4.69
3511 4171 2.026522 TTTTTGTTCTCCGCCACCG 58.973 52.632 0.00 0.00 0.00 4.94
3571 4231 8.715998 CGTATGATCTATTTTAGCTTTGCATCT 58.284 33.333 0.00 0.00 0.00 2.90
3572 4232 7.479916 GCGTATGATCTATTTTAGCTTTGCATC 59.520 37.037 0.00 0.00 0.00 3.91
3573 4233 7.041167 TGCGTATGATCTATTTTAGCTTTGCAT 60.041 33.333 0.00 0.00 0.00 3.96
3574 4234 6.259829 TGCGTATGATCTATTTTAGCTTTGCA 59.740 34.615 0.00 0.00 0.00 4.08
3575 4235 6.658831 TGCGTATGATCTATTTTAGCTTTGC 58.341 36.000 0.00 0.00 0.00 3.68
3579 4239 9.489084 TGTTAATGCGTATGATCTATTTTAGCT 57.511 29.630 0.00 0.00 0.00 3.32
3586 4246 9.705290 TGTGTATTGTTAATGCGTATGATCTAT 57.295 29.630 0.00 0.00 0.00 1.98
3722 5416 3.073798 TGCCATTGACTGGGTTTTCTAGA 59.926 43.478 0.00 0.00 46.06 2.43
3734 5428 4.074970 CAAAGAAGGTACTGCCATTGACT 58.925 43.478 0.00 0.00 40.86 3.41
3737 5431 5.452078 TTTCAAAGAAGGTACTGCCATTG 57.548 39.130 0.00 0.00 40.86 2.82
3778 5472 9.086336 GAGAGAGATACAAAAGTCTTGATCTTG 57.914 37.037 0.00 0.00 0.00 3.02
3790 5484 7.861629 AGAGAGAGAGAGAGAGAGATACAAAA 58.138 38.462 0.00 0.00 0.00 2.44
3797 5491 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3799 5493 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3803 5497 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3829 8234 7.667635 TGTTTTACATTGAGAGAGAGAGAGAGA 59.332 37.037 0.00 0.00 0.00 3.10
3830 8235 7.754924 GTGTTTTACATTGAGAGAGAGAGAGAG 59.245 40.741 0.00 0.00 0.00 3.20
3831 8236 7.450014 AGTGTTTTACATTGAGAGAGAGAGAGA 59.550 37.037 0.00 0.00 0.00 3.10
3832 8237 7.601856 AGTGTTTTACATTGAGAGAGAGAGAG 58.398 38.462 0.00 0.00 0.00 3.20
3833 8238 7.531857 AGTGTTTTACATTGAGAGAGAGAGA 57.468 36.000 0.00 0.00 0.00 3.10
3834 8239 9.515020 GATAGTGTTTTACATTGAGAGAGAGAG 57.485 37.037 0.00 0.00 0.00 3.20
3835 8240 8.184848 CGATAGTGTTTTACATTGAGAGAGAGA 58.815 37.037 0.00 0.00 0.00 3.10
3836 8241 8.184848 TCGATAGTGTTTTACATTGAGAGAGAG 58.815 37.037 0.00 0.00 37.40 3.20
3837 8242 8.051901 TCGATAGTGTTTTACATTGAGAGAGA 57.948 34.615 0.00 0.00 37.40 3.10
3838 8243 8.864069 ATCGATAGTGTTTTACATTGAGAGAG 57.136 34.615 0.00 0.00 37.40 3.20
3867 8272 6.237901 ACATGATGTCCAACAGTTAGCTTAA 58.762 36.000 0.00 0.00 0.00 1.85
3873 8278 4.023279 GCACAACATGATGTCCAACAGTTA 60.023 41.667 5.51 0.00 0.00 2.24
3879 8284 2.957680 AGTTGCACAACATGATGTCCAA 59.042 40.909 8.27 8.27 43.47 3.53
3880 8285 2.293955 CAGTTGCACAACATGATGTCCA 59.706 45.455 15.40 0.00 43.47 4.02
3881 8286 2.294233 ACAGTTGCACAACATGATGTCC 59.706 45.455 15.40 0.00 43.47 4.02
3882 8287 3.631145 ACAGTTGCACAACATGATGTC 57.369 42.857 15.40 2.60 43.47 3.06
3883 8288 5.005740 AGATACAGTTGCACAACATGATGT 58.994 37.500 15.40 12.34 43.47 3.06
3884 8289 5.556355 AGATACAGTTGCACAACATGATG 57.444 39.130 15.40 0.00 43.47 3.07
3885 8290 4.330894 CGAGATACAGTTGCACAACATGAT 59.669 41.667 15.40 5.27 43.47 2.45
3886 8291 3.679502 CGAGATACAGTTGCACAACATGA 59.320 43.478 15.40 0.71 43.47 3.07
3887 8292 3.679502 TCGAGATACAGTTGCACAACATG 59.320 43.478 15.40 12.15 43.47 3.21
3888 8293 3.925379 TCGAGATACAGTTGCACAACAT 58.075 40.909 15.40 6.01 43.47 2.71
3889 8294 3.378911 TCGAGATACAGTTGCACAACA 57.621 42.857 15.40 0.00 43.47 3.33
3890 8295 3.926527 TCATCGAGATACAGTTGCACAAC 59.073 43.478 5.36 5.36 41.45 3.32
3902 8307 7.436933 ACTTAGCAATTGACATCATCGAGATA 58.563 34.615 10.34 0.00 34.43 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.