Multiple sequence alignment - TraesCS7D01G320200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G320200 chr7D 100.000 2327 0 0 1 2327 409614169 409611843 0.000000e+00 4298
1 TraesCS7D01G320200 chr7D 96.644 298 10 0 1 298 510412442 510412739 1.610000e-136 496
2 TraesCS7D01G320200 chr7A 91.956 1728 103 18 611 2326 470845902 470844199 0.000000e+00 2388
3 TraesCS7D01G320200 chr7A 91.706 422 35 0 1 422 30718823 30719244 9.260000e-164 586
4 TraesCS7D01G320200 chr7A 87.368 285 36 0 138 422 690833949 690834233 6.200000e-86 327
5 TraesCS7D01G320200 chr7A 96.447 197 4 1 423 619 470846645 470846452 2.880000e-84 322
6 TraesCS7D01G320200 chr7B 90.463 1468 117 17 614 2074 424157176 424155725 0.000000e+00 1914
7 TraesCS7D01G320200 chr7B 92.248 258 20 0 2070 2327 424155546 424155289 1.310000e-97 366
8 TraesCS7D01G320200 chr7B 96.447 197 4 1 423 619 424157934 424157741 2.880000e-84 322
9 TraesCS7D01G320200 chr5D 98.585 424 6 0 1 424 478955486 478955063 0.000000e+00 750
10 TraesCS7D01G320200 chr5D 96.831 284 9 0 139 422 361668827 361669110 2.090000e-130 475
11 TraesCS7D01G320200 chr5D 93.519 108 7 0 6 113 361668729 361668836 6.650000e-36 161
12 TraesCS7D01G320200 chr2D 97.630 422 10 0 1 422 43669589 43670010 0.000000e+00 725
13 TraesCS7D01G320200 chr2D 97.136 419 12 0 1 419 7467498 7467080 0.000000e+00 708
14 TraesCS7D01G320200 chr2D 89.825 285 29 0 138 422 638440567 638440283 1.310000e-97 366
15 TraesCS7D01G320200 chr6D 90.114 263 24 2 160 422 441672969 441673229 7.960000e-90 340
16 TraesCS7D01G320200 chr6D 93.519 108 6 1 6 113 425994849 425994955 2.390000e-35 159
17 TraesCS7D01G320200 chr2B 90.511 137 13 0 6 142 263807568 263807704 5.110000e-42 182
18 TraesCS7D01G320200 chrUn 98.571 70 1 0 73 142 87834972 87834903 8.730000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G320200 chr7D 409611843 409614169 2326 True 4298.000000 4298 100.000000 1 2327 1 chr7D.!!$R1 2326
1 TraesCS7D01G320200 chr7A 470844199 470846645 2446 True 1355.000000 2388 94.201500 423 2326 2 chr7A.!!$R1 1903
2 TraesCS7D01G320200 chr7B 424155289 424157934 2645 True 867.333333 1914 93.052667 423 2327 3 chr7B.!!$R1 1904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1530 0.034059 CATCTCTGGATGTACCGGGC 59.966 60.0 6.32 0.0 44.73 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2948 0.809241 GCACGATCTTCTCCAGCAGG 60.809 60.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.124403 CCATGGAGCTGAGGGTGC 60.124 66.667 5.56 0.00 0.00 5.01
18 19 2.124403 CATGGAGCTGAGGGTGCC 60.124 66.667 0.00 0.00 0.00 5.01
19 20 3.790437 ATGGAGCTGAGGGTGCCG 61.790 66.667 0.00 0.00 0.00 5.69
31 32 3.426568 GTGCCGCTGCTGTCCTTC 61.427 66.667 0.70 0.00 38.71 3.46
32 33 3.630013 TGCCGCTGCTGTCCTTCT 61.630 61.111 0.70 0.00 38.71 2.85
33 34 2.817396 GCCGCTGCTGTCCTTCTC 60.817 66.667 0.00 0.00 33.53 2.87
34 35 2.977178 CCGCTGCTGTCCTTCTCT 59.023 61.111 0.00 0.00 0.00 3.10
35 36 1.949847 GCCGCTGCTGTCCTTCTCTA 61.950 60.000 0.00 0.00 33.53 2.43
36 37 0.179124 CCGCTGCTGTCCTTCTCTAC 60.179 60.000 0.00 0.00 0.00 2.59
37 38 0.814457 CGCTGCTGTCCTTCTCTACT 59.186 55.000 0.00 0.00 0.00 2.57
38 39 1.468908 CGCTGCTGTCCTTCTCTACTG 60.469 57.143 0.00 0.00 0.00 2.74
39 40 1.821753 GCTGCTGTCCTTCTCTACTGA 59.178 52.381 0.00 0.00 0.00 3.41
40 41 2.159254 GCTGCTGTCCTTCTCTACTGAG 60.159 54.545 0.00 0.00 41.51 3.35
41 42 2.426738 CTGCTGTCCTTCTCTACTGAGG 59.573 54.545 0.00 0.00 40.58 3.86
42 43 2.041755 TGCTGTCCTTCTCTACTGAGGA 59.958 50.000 0.00 0.00 40.58 3.71
43 44 3.295973 GCTGTCCTTCTCTACTGAGGAT 58.704 50.000 0.00 0.00 40.58 3.24
44 45 3.068024 GCTGTCCTTCTCTACTGAGGATG 59.932 52.174 0.00 0.00 40.58 3.51
45 46 4.277476 CTGTCCTTCTCTACTGAGGATGT 58.723 47.826 0.00 0.00 40.58 3.06
46 47 4.274147 TGTCCTTCTCTACTGAGGATGTC 58.726 47.826 0.00 0.00 40.58 3.06
47 48 3.314080 GTCCTTCTCTACTGAGGATGTCG 59.686 52.174 0.00 0.00 40.58 4.35
48 49 2.034053 CCTTCTCTACTGAGGATGTCGC 59.966 54.545 0.00 0.00 40.58 5.19
49 50 1.681538 TCTCTACTGAGGATGTCGCC 58.318 55.000 0.00 0.00 40.58 5.54
50 51 0.309302 CTCTACTGAGGATGTCGCCG 59.691 60.000 0.00 0.00 36.70 6.46
51 52 1.299468 CTACTGAGGATGTCGCCGC 60.299 63.158 0.00 0.00 0.00 6.53
52 53 2.990674 CTACTGAGGATGTCGCCGCG 62.991 65.000 6.39 6.39 0.00 6.46
72 73 3.782244 GGCTGCACGCAGACGAAG 61.782 66.667 22.81 0.00 46.30 3.79
73 74 4.436448 GCTGCACGCAGACGAAGC 62.436 66.667 22.81 3.02 46.30 3.86
74 75 3.782244 CTGCACGCAGACGAAGCC 61.782 66.667 13.87 0.00 46.30 4.35
75 76 4.600576 TGCACGCAGACGAAGCCA 62.601 61.111 0.00 0.00 43.93 4.75
76 77 3.121030 GCACGCAGACGAAGCCAT 61.121 61.111 0.00 0.00 43.93 4.40
77 78 3.084579 CACGCAGACGAAGCCATC 58.915 61.111 0.00 0.00 43.93 3.51
78 79 1.737735 CACGCAGACGAAGCCATCA 60.738 57.895 0.00 0.00 43.93 3.07
79 80 1.086067 CACGCAGACGAAGCCATCAT 61.086 55.000 0.00 0.00 43.93 2.45
80 81 0.807667 ACGCAGACGAAGCCATCATC 60.808 55.000 0.00 0.00 43.93 2.92
81 82 0.529337 CGCAGACGAAGCCATCATCT 60.529 55.000 0.00 0.00 43.93 2.90
82 83 0.935898 GCAGACGAAGCCATCATCTG 59.064 55.000 8.40 8.40 39.84 2.90
84 85 0.467384 AGACGAAGCCATCATCTGGG 59.533 55.000 0.00 0.00 46.06 4.45
90 91 2.903855 CCATCATCTGGGCACGGC 60.904 66.667 0.00 0.00 41.82 5.68
91 92 3.274586 CATCATCTGGGCACGGCG 61.275 66.667 4.80 4.80 0.00 6.46
92 93 4.552365 ATCATCTGGGCACGGCGG 62.552 66.667 13.24 0.66 0.00 6.13
102 103 4.457496 CACGGCGGCTCAGGACAT 62.457 66.667 13.24 0.00 0.00 3.06
103 104 4.148825 ACGGCGGCTCAGGACATC 62.149 66.667 13.24 0.00 0.00 3.06
105 106 3.838271 GGCGGCTCAGGACATCGA 61.838 66.667 0.00 0.00 0.00 3.59
106 107 2.583593 GCGGCTCAGGACATCGAC 60.584 66.667 0.00 0.00 0.00 4.20
107 108 2.278206 CGGCTCAGGACATCGACG 60.278 66.667 0.00 0.00 0.00 5.12
108 109 2.105128 GGCTCAGGACATCGACGG 59.895 66.667 0.00 0.00 0.00 4.79
109 110 2.583593 GCTCAGGACATCGACGGC 60.584 66.667 0.00 0.00 0.00 5.68
110 111 2.278206 CTCAGGACATCGACGGCG 60.278 66.667 2.87 2.87 39.35 6.46
122 123 3.371063 ACGGCGACATCGTCAGGT 61.371 61.111 16.62 0.00 45.47 4.00
123 124 2.126071 CGGCGACATCGTCAGGTT 60.126 61.111 0.00 0.00 45.47 3.50
124 125 2.444624 CGGCGACATCGTCAGGTTG 61.445 63.158 0.00 0.00 45.47 3.77
125 126 2.100631 GGCGACATCGTCAGGTTGG 61.101 63.158 0.04 0.00 44.43 3.77
126 127 1.080093 GCGACATCGTCAGGTTGGA 60.080 57.895 2.85 0.00 42.22 3.53
127 128 1.078759 GCGACATCGTCAGGTTGGAG 61.079 60.000 2.85 0.00 42.22 3.86
128 129 1.078759 CGACATCGTCAGGTTGGAGC 61.079 60.000 0.00 0.00 32.09 4.70
129 130 0.037326 GACATCGTCAGGTTGGAGCA 60.037 55.000 0.00 0.00 32.09 4.26
130 131 0.396435 ACATCGTCAGGTTGGAGCAA 59.604 50.000 0.00 0.00 0.00 3.91
131 132 1.081892 CATCGTCAGGTTGGAGCAAG 58.918 55.000 0.00 0.00 0.00 4.01
132 133 0.036010 ATCGTCAGGTTGGAGCAAGG 60.036 55.000 0.00 0.00 0.00 3.61
133 134 2.328099 CGTCAGGTTGGAGCAAGGC 61.328 63.158 0.00 0.00 0.00 4.35
134 135 1.228245 GTCAGGTTGGAGCAAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
135 136 1.228245 TCAGGTTGGAGCAAGGCAC 60.228 57.895 0.00 0.00 0.00 5.01
136 137 2.281761 AGGTTGGAGCAAGGCACG 60.282 61.111 0.00 0.00 0.00 5.34
137 138 3.365265 GGTTGGAGCAAGGCACGG 61.365 66.667 0.00 0.00 0.00 4.94
138 139 4.043200 GTTGGAGCAAGGCACGGC 62.043 66.667 0.00 0.00 0.00 5.68
170 171 3.833645 CCGGCGGGATCGAGAACA 61.834 66.667 20.56 0.00 39.00 3.18
171 172 2.278857 CGGCGGGATCGAGAACAG 60.279 66.667 0.00 0.00 39.00 3.16
172 173 2.107141 GGCGGGATCGAGAACAGG 59.893 66.667 0.00 0.00 39.00 4.00
173 174 2.107141 GCGGGATCGAGAACAGGG 59.893 66.667 0.00 0.00 39.00 4.45
174 175 2.815308 CGGGATCGAGAACAGGGG 59.185 66.667 0.00 0.00 39.00 4.79
175 176 2.797278 CGGGATCGAGAACAGGGGG 61.797 68.421 0.00 0.00 39.00 5.40
176 177 1.382695 GGGATCGAGAACAGGGGGA 60.383 63.158 0.00 0.00 0.00 4.81
177 178 0.764752 GGGATCGAGAACAGGGGGAT 60.765 60.000 0.00 0.00 0.00 3.85
178 179 1.132500 GGATCGAGAACAGGGGGATT 58.868 55.000 0.00 0.00 0.00 3.01
179 180 1.202698 GGATCGAGAACAGGGGGATTG 60.203 57.143 0.00 0.00 0.00 2.67
180 181 1.762957 GATCGAGAACAGGGGGATTGA 59.237 52.381 0.00 0.00 0.00 2.57
181 182 1.195115 TCGAGAACAGGGGGATTGAG 58.805 55.000 0.00 0.00 0.00 3.02
182 183 1.195115 CGAGAACAGGGGGATTGAGA 58.805 55.000 0.00 0.00 0.00 3.27
183 184 1.137872 CGAGAACAGGGGGATTGAGAG 59.862 57.143 0.00 0.00 0.00 3.20
184 185 0.915364 AGAACAGGGGGATTGAGAGC 59.085 55.000 0.00 0.00 0.00 4.09
185 186 0.620556 GAACAGGGGGATTGAGAGCA 59.379 55.000 0.00 0.00 0.00 4.26
186 187 1.004745 GAACAGGGGGATTGAGAGCAA 59.995 52.381 0.00 0.00 38.60 3.91
187 188 0.622665 ACAGGGGGATTGAGAGCAAG 59.377 55.000 0.00 0.00 37.45 4.01
188 189 0.106819 CAGGGGGATTGAGAGCAAGG 60.107 60.000 0.00 0.00 37.45 3.61
189 190 1.228510 GGGGGATTGAGAGCAAGGG 59.771 63.158 0.00 0.00 37.45 3.95
190 191 1.228510 GGGGATTGAGAGCAAGGGG 59.771 63.158 0.00 0.00 37.45 4.79
191 192 1.228510 GGGATTGAGAGCAAGGGGG 59.771 63.158 0.00 0.00 37.45 5.40
192 193 1.575447 GGGATTGAGAGCAAGGGGGT 61.575 60.000 0.00 0.00 37.45 4.95
193 194 0.332972 GGATTGAGAGCAAGGGGGTT 59.667 55.000 0.00 0.00 37.45 4.11
194 195 1.467920 GATTGAGAGCAAGGGGGTTG 58.532 55.000 0.00 0.00 37.45 3.77
195 196 1.004745 GATTGAGAGCAAGGGGGTTGA 59.995 52.381 0.00 0.00 38.60 3.18
196 197 1.075601 TTGAGAGCAAGGGGGTTGAT 58.924 50.000 0.00 0.00 38.60 2.57
197 198 1.075601 TGAGAGCAAGGGGGTTGATT 58.924 50.000 0.00 0.00 38.60 2.57
198 199 1.272092 TGAGAGCAAGGGGGTTGATTG 60.272 52.381 0.00 0.00 38.60 2.67
200 201 4.118584 GCAAGGGGGTTGATTGCT 57.881 55.556 2.07 0.00 44.57 3.91
201 202 2.365410 GCAAGGGGGTTGATTGCTT 58.635 52.632 2.07 0.00 44.57 3.91
202 203 0.686789 GCAAGGGGGTTGATTGCTTT 59.313 50.000 2.07 0.00 44.57 3.51
203 204 1.072173 GCAAGGGGGTTGATTGCTTTT 59.928 47.619 2.07 0.00 44.57 2.27
204 205 2.487086 GCAAGGGGGTTGATTGCTTTTT 60.487 45.455 2.07 0.00 44.57 1.94
205 206 3.244387 GCAAGGGGGTTGATTGCTTTTTA 60.244 43.478 2.07 0.00 44.57 1.52
206 207 4.565444 GCAAGGGGGTTGATTGCTTTTTAT 60.565 41.667 2.07 0.00 44.57 1.40
207 208 5.559770 CAAGGGGGTTGATTGCTTTTTATT 58.440 37.500 0.00 0.00 38.60 1.40
208 209 5.841267 AGGGGGTTGATTGCTTTTTATTT 57.159 34.783 0.00 0.00 0.00 1.40
209 210 6.199557 AGGGGGTTGATTGCTTTTTATTTT 57.800 33.333 0.00 0.00 0.00 1.82
210 211 6.609876 AGGGGGTTGATTGCTTTTTATTTTT 58.390 32.000 0.00 0.00 0.00 1.94
211 212 7.750655 AGGGGGTTGATTGCTTTTTATTTTTA 58.249 30.769 0.00 0.00 0.00 1.52
212 213 7.882791 AGGGGGTTGATTGCTTTTTATTTTTAG 59.117 33.333 0.00 0.00 0.00 1.85
213 214 7.880713 GGGGGTTGATTGCTTTTTATTTTTAGA 59.119 33.333 0.00 0.00 0.00 2.10
214 215 9.448438 GGGGTTGATTGCTTTTTATTTTTAGAT 57.552 29.630 0.00 0.00 0.00 1.98
219 220 9.874205 TGATTGCTTTTTATTTTTAGATCCAGG 57.126 29.630 0.00 0.00 0.00 4.45
220 221 9.317936 GATTGCTTTTTATTTTTAGATCCAGGG 57.682 33.333 0.00 0.00 0.00 4.45
221 222 7.181569 TGCTTTTTATTTTTAGATCCAGGGG 57.818 36.000 0.00 0.00 0.00 4.79
222 223 6.728632 TGCTTTTTATTTTTAGATCCAGGGGT 59.271 34.615 0.00 0.00 0.00 4.95
223 224 7.041721 GCTTTTTATTTTTAGATCCAGGGGTG 58.958 38.462 0.00 0.00 0.00 4.61
224 225 7.310423 GCTTTTTATTTTTAGATCCAGGGGTGT 60.310 37.037 0.00 0.00 0.00 4.16
225 226 7.475137 TTTTATTTTTAGATCCAGGGGTGTG 57.525 36.000 0.00 0.00 0.00 3.82
226 227 4.675063 ATTTTTAGATCCAGGGGTGTGT 57.325 40.909 0.00 0.00 0.00 3.72
227 228 5.789574 ATTTTTAGATCCAGGGGTGTGTA 57.210 39.130 0.00 0.00 0.00 2.90
228 229 5.789574 TTTTTAGATCCAGGGGTGTGTAT 57.210 39.130 0.00 0.00 0.00 2.29
229 230 4.771114 TTTAGATCCAGGGGTGTGTATG 57.229 45.455 0.00 0.00 0.00 2.39
230 231 2.568546 AGATCCAGGGGTGTGTATGA 57.431 50.000 0.00 0.00 0.00 2.15
231 232 2.119495 AGATCCAGGGGTGTGTATGAC 58.881 52.381 0.00 0.00 0.00 3.06
232 233 1.837439 GATCCAGGGGTGTGTATGACA 59.163 52.381 0.00 0.00 0.00 3.58
233 234 1.965414 TCCAGGGGTGTGTATGACAT 58.035 50.000 0.00 0.00 36.78 3.06
234 235 2.274542 TCCAGGGGTGTGTATGACATT 58.725 47.619 0.00 0.00 36.78 2.71
235 236 3.455849 TCCAGGGGTGTGTATGACATTA 58.544 45.455 0.00 0.00 36.78 1.90
236 237 3.454447 TCCAGGGGTGTGTATGACATTAG 59.546 47.826 0.00 0.00 36.78 1.73
237 238 3.199946 CCAGGGGTGTGTATGACATTAGT 59.800 47.826 0.00 0.00 36.78 2.24
238 239 4.324254 CCAGGGGTGTGTATGACATTAGTT 60.324 45.833 0.00 0.00 36.78 2.24
239 240 5.253330 CAGGGGTGTGTATGACATTAGTTT 58.747 41.667 0.00 0.00 36.78 2.66
240 241 5.123820 CAGGGGTGTGTATGACATTAGTTTG 59.876 44.000 0.00 0.00 36.78 2.93
241 242 4.142469 GGGGTGTGTATGACATTAGTTTGC 60.142 45.833 0.00 0.00 36.78 3.68
242 243 4.142469 GGGTGTGTATGACATTAGTTTGCC 60.142 45.833 0.00 0.00 36.78 4.52
243 244 4.457603 GGTGTGTATGACATTAGTTTGCCA 59.542 41.667 0.00 0.00 36.78 4.92
244 245 5.048364 GGTGTGTATGACATTAGTTTGCCAA 60.048 40.000 0.00 0.00 36.78 4.52
245 246 6.086222 GTGTGTATGACATTAGTTTGCCAAG 58.914 40.000 0.00 0.00 36.78 3.61
246 247 5.767665 TGTGTATGACATTAGTTTGCCAAGT 59.232 36.000 0.00 0.00 0.00 3.16
247 248 6.072728 TGTGTATGACATTAGTTTGCCAAGTC 60.073 38.462 0.00 0.00 0.00 3.01
248 249 6.000840 TGTATGACATTAGTTTGCCAAGTCA 58.999 36.000 0.00 0.00 38.67 3.41
249 250 5.633830 ATGACATTAGTTTGCCAAGTCAG 57.366 39.130 0.00 0.00 37.85 3.51
250 251 3.253188 TGACATTAGTTTGCCAAGTCAGC 59.747 43.478 0.00 0.00 31.63 4.26
251 252 3.490348 ACATTAGTTTGCCAAGTCAGCT 58.510 40.909 0.00 0.00 0.00 4.24
252 253 3.503748 ACATTAGTTTGCCAAGTCAGCTC 59.496 43.478 0.00 0.00 0.00 4.09
253 254 3.492102 TTAGTTTGCCAAGTCAGCTCT 57.508 42.857 0.00 0.00 0.00 4.09
254 255 2.355010 AGTTTGCCAAGTCAGCTCTT 57.645 45.000 0.00 0.00 0.00 2.85
255 256 1.952296 AGTTTGCCAAGTCAGCTCTTG 59.048 47.619 7.95 7.95 42.86 3.02
256 257 1.949525 GTTTGCCAAGTCAGCTCTTGA 59.050 47.619 14.98 0.00 45.11 3.02
263 264 2.659016 TCAGCTCTTGACAGCCGG 59.341 61.111 0.00 0.00 40.65 6.13
264 265 2.435586 CAGCTCTTGACAGCCGGG 60.436 66.667 2.18 0.00 40.65 5.73
265 266 4.400961 AGCTCTTGACAGCCGGGC 62.401 66.667 12.11 12.11 40.65 6.13
267 268 3.710722 CTCTTGACAGCCGGGCCT 61.711 66.667 17.02 0.00 0.00 5.19
268 269 3.672295 CTCTTGACAGCCGGGCCTC 62.672 68.421 17.02 11.36 0.00 4.70
269 270 4.020617 CTTGACAGCCGGGCCTCA 62.021 66.667 17.02 14.04 0.00 3.86
270 271 4.329545 TTGACAGCCGGGCCTCAC 62.330 66.667 17.02 5.79 0.00 3.51
272 273 4.021925 GACAGCCGGGCCTCACTT 62.022 66.667 17.02 0.00 0.00 3.16
273 274 4.335647 ACAGCCGGGCCTCACTTG 62.336 66.667 17.02 8.85 0.00 3.16
274 275 4.335647 CAGCCGGGCCTCACTTGT 62.336 66.667 17.02 0.00 0.00 3.16
275 276 4.021925 AGCCGGGCCTCACTTGTC 62.022 66.667 17.02 0.00 0.00 3.18
276 277 4.329545 GCCGGGCCTCACTTGTCA 62.330 66.667 8.12 0.00 0.00 3.58
277 278 2.046892 CCGGGCCTCACTTGTCAG 60.047 66.667 0.84 0.00 0.00 3.51
278 279 2.583441 CCGGGCCTCACTTGTCAGA 61.583 63.158 0.84 0.00 0.00 3.27
279 280 1.371183 CGGGCCTCACTTGTCAGAA 59.629 57.895 0.84 0.00 0.00 3.02
280 281 0.250295 CGGGCCTCACTTGTCAGAAA 60.250 55.000 0.84 0.00 0.00 2.52
281 282 1.528129 GGGCCTCACTTGTCAGAAAG 58.472 55.000 0.84 0.00 0.00 2.62
282 283 0.877743 GGCCTCACTTGTCAGAAAGC 59.122 55.000 0.00 0.00 0.00 3.51
283 284 0.514691 GCCTCACTTGTCAGAAAGCG 59.485 55.000 0.00 0.00 0.00 4.68
284 285 1.873903 GCCTCACTTGTCAGAAAGCGA 60.874 52.381 0.00 0.00 0.00 4.93
285 286 2.693069 CCTCACTTGTCAGAAAGCGAT 58.307 47.619 0.00 0.00 0.00 4.58
286 287 2.670414 CCTCACTTGTCAGAAAGCGATC 59.330 50.000 0.00 0.00 0.00 3.69
287 288 3.320626 CTCACTTGTCAGAAAGCGATCA 58.679 45.455 0.00 0.00 0.00 2.92
288 289 3.727726 TCACTTGTCAGAAAGCGATCAA 58.272 40.909 0.00 0.00 0.00 2.57
289 290 4.126437 TCACTTGTCAGAAAGCGATCAAA 58.874 39.130 0.00 0.00 0.00 2.69
290 291 4.212004 TCACTTGTCAGAAAGCGATCAAAG 59.788 41.667 0.00 0.00 0.00 2.77
291 292 3.499918 ACTTGTCAGAAAGCGATCAAAGG 59.500 43.478 0.00 0.00 0.00 3.11
292 293 2.426522 TGTCAGAAAGCGATCAAAGGG 58.573 47.619 0.00 0.00 0.00 3.95
293 294 2.038426 TGTCAGAAAGCGATCAAAGGGA 59.962 45.455 0.00 0.00 0.00 4.20
294 295 2.416893 GTCAGAAAGCGATCAAAGGGAC 59.583 50.000 0.00 0.00 0.00 4.46
295 296 1.740025 CAGAAAGCGATCAAAGGGACC 59.260 52.381 0.00 0.00 0.00 4.46
296 297 1.351017 AGAAAGCGATCAAAGGGACCA 59.649 47.619 0.00 0.00 0.00 4.02
297 298 2.159382 GAAAGCGATCAAAGGGACCAA 58.841 47.619 0.00 0.00 0.00 3.67
298 299 2.286365 AAGCGATCAAAGGGACCAAA 57.714 45.000 0.00 0.00 0.00 3.28
299 300 2.514458 AGCGATCAAAGGGACCAAAT 57.486 45.000 0.00 0.00 0.00 2.32
300 301 2.369394 AGCGATCAAAGGGACCAAATC 58.631 47.619 0.00 0.00 0.00 2.17
301 302 2.091541 GCGATCAAAGGGACCAAATCA 58.908 47.619 0.00 0.00 0.00 2.57
302 303 2.159379 GCGATCAAAGGGACCAAATCAC 60.159 50.000 0.00 0.00 0.00 3.06
303 304 2.423538 CGATCAAAGGGACCAAATCACC 59.576 50.000 0.00 0.00 0.00 4.02
304 305 2.302587 TCAAAGGGACCAAATCACCC 57.697 50.000 0.00 0.00 43.55 4.61
308 309 3.095922 GGGACCAAATCACCCGATC 57.904 57.895 0.00 0.00 34.03 3.69
309 310 0.254747 GGGACCAAATCACCCGATCA 59.745 55.000 0.00 0.00 34.03 2.92
310 311 1.668419 GGACCAAATCACCCGATCAG 58.332 55.000 0.00 0.00 0.00 2.90
311 312 1.065418 GGACCAAATCACCCGATCAGT 60.065 52.381 0.00 0.00 0.00 3.41
312 313 2.009774 GACCAAATCACCCGATCAGTG 58.990 52.381 6.55 6.55 36.54 3.66
313 314 0.734889 CCAAATCACCCGATCAGTGC 59.265 55.000 7.80 0.00 35.14 4.40
314 315 1.679944 CCAAATCACCCGATCAGTGCT 60.680 52.381 7.80 0.00 35.14 4.40
315 316 2.086869 CAAATCACCCGATCAGTGCTT 58.913 47.619 7.80 2.78 35.14 3.91
316 317 2.489329 CAAATCACCCGATCAGTGCTTT 59.511 45.455 7.80 8.03 34.76 3.51
317 318 2.496899 ATCACCCGATCAGTGCTTTT 57.503 45.000 7.80 0.00 35.14 2.27
318 319 2.270352 TCACCCGATCAGTGCTTTTT 57.730 45.000 7.80 0.00 35.14 1.94
319 320 1.879380 TCACCCGATCAGTGCTTTTTG 59.121 47.619 7.80 0.00 35.14 2.44
320 321 0.598065 ACCCGATCAGTGCTTTTTGC 59.402 50.000 0.00 0.00 43.25 3.68
343 344 8.958119 TGCAATAAGATTAGAGATTTTACGGT 57.042 30.769 0.00 0.00 0.00 4.83
344 345 8.826710 TGCAATAAGATTAGAGATTTTACGGTG 58.173 33.333 0.00 0.00 0.00 4.94
345 346 8.827677 GCAATAAGATTAGAGATTTTACGGTGT 58.172 33.333 0.00 0.00 0.00 4.16
368 369 5.508200 TTTTTGCAACGGATTAGTGACTT 57.492 34.783 0.00 0.00 0.00 3.01
369 370 4.481930 TTTGCAACGGATTAGTGACTTG 57.518 40.909 0.00 0.00 0.00 3.16
370 371 2.422597 TGCAACGGATTAGTGACTTGG 58.577 47.619 0.00 0.00 0.00 3.61
371 372 2.224426 TGCAACGGATTAGTGACTTGGT 60.224 45.455 0.00 0.00 0.00 3.67
372 373 2.159627 GCAACGGATTAGTGACTTGGTG 59.840 50.000 0.00 0.00 0.00 4.17
373 374 2.742053 CAACGGATTAGTGACTTGGTGG 59.258 50.000 0.00 0.00 0.00 4.61
374 375 1.975680 ACGGATTAGTGACTTGGTGGT 59.024 47.619 0.00 0.00 0.00 4.16
375 376 2.370849 ACGGATTAGTGACTTGGTGGTT 59.629 45.455 0.00 0.00 0.00 3.67
376 377 3.181448 ACGGATTAGTGACTTGGTGGTTT 60.181 43.478 0.00 0.00 0.00 3.27
377 378 3.818773 CGGATTAGTGACTTGGTGGTTTT 59.181 43.478 0.00 0.00 0.00 2.43
378 379 4.083484 CGGATTAGTGACTTGGTGGTTTTC 60.083 45.833 0.00 0.00 0.00 2.29
379 380 5.070685 GGATTAGTGACTTGGTGGTTTTCT 58.929 41.667 0.00 0.00 0.00 2.52
380 381 5.048713 GGATTAGTGACTTGGTGGTTTTCTG 60.049 44.000 0.00 0.00 0.00 3.02
381 382 2.024414 AGTGACTTGGTGGTTTTCTGC 58.976 47.619 0.00 0.00 0.00 4.26
382 383 1.748493 GTGACTTGGTGGTTTTCTGCA 59.252 47.619 0.00 0.00 0.00 4.41
383 384 2.165437 GTGACTTGGTGGTTTTCTGCAA 59.835 45.455 0.00 0.00 0.00 4.08
384 385 2.828520 TGACTTGGTGGTTTTCTGCAAA 59.171 40.909 0.00 0.00 0.00 3.68
385 386 3.186909 GACTTGGTGGTTTTCTGCAAAC 58.813 45.455 0.00 0.00 43.78 2.93
392 393 2.331809 GTTTTCTGCAAACCTAGCCG 57.668 50.000 0.00 0.00 39.22 5.52
393 394 0.596082 TTTTCTGCAAACCTAGCCGC 59.404 50.000 0.00 0.00 0.00 6.53
394 395 0.536233 TTTCTGCAAACCTAGCCGCA 60.536 50.000 0.00 0.00 0.00 5.69
395 396 0.536233 TTCTGCAAACCTAGCCGCAA 60.536 50.000 0.00 0.00 33.21 4.85
396 397 0.536233 TCTGCAAACCTAGCCGCAAA 60.536 50.000 0.00 0.00 33.21 3.68
397 398 0.527565 CTGCAAACCTAGCCGCAAAT 59.472 50.000 0.00 0.00 33.21 2.32
398 399 0.243365 TGCAAACCTAGCCGCAAATG 59.757 50.000 0.00 0.00 0.00 2.32
399 400 0.243636 GCAAACCTAGCCGCAAATGT 59.756 50.000 0.00 0.00 0.00 2.71
400 401 1.981254 CAAACCTAGCCGCAAATGTG 58.019 50.000 0.00 0.00 0.00 3.21
402 403 0.251165 AACCTAGCCGCAAATGTGGT 60.251 50.000 14.07 4.51 46.99 4.16
403 404 0.616371 ACCTAGCCGCAAATGTGGTA 59.384 50.000 14.07 5.33 46.99 3.25
404 405 1.299541 CCTAGCCGCAAATGTGGTAG 58.700 55.000 14.07 12.86 46.99 3.18
405 406 1.406887 CCTAGCCGCAAATGTGGTAGT 60.407 52.381 14.07 3.04 46.99 2.73
406 407 2.356135 CTAGCCGCAAATGTGGTAGTT 58.644 47.619 14.07 1.84 46.99 2.24
407 408 1.616159 AGCCGCAAATGTGGTAGTTT 58.384 45.000 14.07 0.00 46.99 2.66
408 409 1.539827 AGCCGCAAATGTGGTAGTTTC 59.460 47.619 14.07 0.00 46.99 2.78
409 410 1.539827 GCCGCAAATGTGGTAGTTTCT 59.460 47.619 14.07 0.00 46.99 2.52
410 411 2.030274 GCCGCAAATGTGGTAGTTTCTT 60.030 45.455 14.07 0.00 46.99 2.52
411 412 3.564511 CCGCAAATGTGGTAGTTTCTTG 58.435 45.455 4.82 0.00 40.69 3.02
412 413 2.979813 CGCAAATGTGGTAGTTTCTTGC 59.020 45.455 0.00 0.00 35.49 4.01
413 414 3.549827 CGCAAATGTGGTAGTTTCTTGCA 60.550 43.478 0.00 0.00 38.02 4.08
414 415 4.367450 GCAAATGTGGTAGTTTCTTGCAA 58.633 39.130 0.00 0.00 38.03 4.08
415 416 4.990426 GCAAATGTGGTAGTTTCTTGCAAT 59.010 37.500 0.00 0.00 38.03 3.56
416 417 5.466393 GCAAATGTGGTAGTTTCTTGCAATT 59.534 36.000 0.00 0.00 38.03 2.32
417 418 6.564499 GCAAATGTGGTAGTTTCTTGCAATTG 60.564 38.462 0.00 0.00 38.03 2.32
418 419 6.403866 AATGTGGTAGTTTCTTGCAATTGA 57.596 33.333 10.34 0.00 0.00 2.57
419 420 5.181690 TGTGGTAGTTTCTTGCAATTGAC 57.818 39.130 10.34 1.02 0.00 3.18
420 421 4.887071 TGTGGTAGTTTCTTGCAATTGACT 59.113 37.500 10.34 6.77 0.00 3.41
421 422 5.008613 TGTGGTAGTTTCTTGCAATTGACTC 59.991 40.000 10.34 0.00 0.00 3.36
465 466 4.586421 TGAATGCAAAGGGATTTGTGTGTA 59.414 37.500 0.00 0.00 34.96 2.90
536 537 7.872483 CACAAATAGGCTACAATTTTGGAGTTT 59.128 33.333 17.83 0.85 41.33 2.66
583 584 1.202268 GCAAGCTCTGGATGCAACATC 60.202 52.381 2.44 0.00 39.81 3.06
584 585 2.089201 CAAGCTCTGGATGCAACATCA 58.911 47.619 9.60 0.00 0.00 3.07
585 586 1.747709 AGCTCTGGATGCAACATCAC 58.252 50.000 9.60 0.62 0.00 3.06
626 1200 9.793259 ATTGGGGTAGTTGTATCTAAATATGTG 57.207 33.333 0.00 0.00 0.00 3.21
749 1323 5.037385 GGACTTGAGCAAACTTTTCAACTC 58.963 41.667 0.00 0.00 0.00 3.01
758 1332 5.869344 GCAAACTTTTCAACTCCTTCAGTTT 59.131 36.000 0.00 0.00 43.38 2.66
774 1348 6.363357 CCTTCAGTTTACTGCAAATTAACAGC 59.637 38.462 5.00 0.00 43.46 4.40
776 1350 5.008217 TCAGTTTACTGCAAATTAACAGCGT 59.992 36.000 5.00 2.75 43.46 5.07
777 1351 5.115472 CAGTTTACTGCAAATTAACAGCGTG 59.885 40.000 7.39 0.00 37.42 5.34
778 1352 2.050477 ACTGCAAATTAACAGCGTGC 57.950 45.000 7.39 0.00 37.42 5.34
779 1353 1.335872 ACTGCAAATTAACAGCGTGCC 60.336 47.619 7.39 0.00 37.42 5.01
780 1354 0.958091 TGCAAATTAACAGCGTGCCT 59.042 45.000 0.00 0.00 34.25 4.75
781 1355 1.068610 TGCAAATTAACAGCGTGCCTC 60.069 47.619 0.00 0.00 34.25 4.70
782 1356 1.882198 CAAATTAACAGCGTGCCTCG 58.118 50.000 0.00 0.00 43.12 4.63
833 1407 4.040952 AGAAGACTAACACAGCCACTGATT 59.959 41.667 0.78 0.00 35.18 2.57
834 1408 3.668447 AGACTAACACAGCCACTGATTG 58.332 45.455 0.78 0.00 35.18 2.67
838 1412 2.346766 ACACAGCCACTGATTGTCAA 57.653 45.000 0.78 0.00 35.18 3.18
859 1433 7.860373 TGTCAAACGAAGAAAAATATTCAGGTG 59.140 33.333 0.00 0.00 0.00 4.00
863 1437 5.473504 ACGAAGAAAAATATTCAGGTGCAGT 59.526 36.000 0.00 0.00 0.00 4.40
950 1526 5.279406 CCTGATTCTCATCTCTGGATGTACC 60.279 48.000 5.99 0.00 46.74 3.34
954 1530 0.034059 CATCTCTGGATGTACCGGGC 59.966 60.000 6.32 0.00 44.73 6.13
977 1553 7.148457 GGGCGGCTATAGTAATAATCTTGTTTC 60.148 40.741 9.56 0.00 0.00 2.78
989 1565 5.520376 AATCTTGTTTCCAGTTTCAGGTG 57.480 39.130 0.00 0.00 0.00 4.00
1024 1600 0.667993 CGTCTTGCCTTTGCCAAAGA 59.332 50.000 18.59 0.00 41.02 2.52
1060 1636 0.884704 GTCGGAGCTGCCTTTTGACA 60.885 55.000 0.00 0.00 0.00 3.58
1079 1655 6.024552 TGACACCCTCTATTCAATTTTTGC 57.975 37.500 0.00 0.00 0.00 3.68
1080 1656 5.047377 TGACACCCTCTATTCAATTTTTGCC 60.047 40.000 0.00 0.00 0.00 4.52
1104 1680 3.709587 TCTAGGGGTCGTTGATCTTCTT 58.290 45.455 0.00 0.00 0.00 2.52
1207 1783 1.437573 GAGATCGTCGGCATGGACA 59.562 57.895 0.00 0.00 36.73 4.02
1237 1813 1.081509 CGGGCAATGTTGAACGTGG 60.082 57.895 0.00 0.00 0.00 4.94
1238 1814 1.511318 CGGGCAATGTTGAACGTGGA 61.511 55.000 0.00 0.00 0.00 4.02
1242 1818 3.130340 GGGCAATGTTGAACGTGGATATT 59.870 43.478 0.00 0.00 0.00 1.28
1254 1830 3.132289 ACGTGGATATTGACCGTTCTGAT 59.868 43.478 0.00 0.00 0.00 2.90
1283 1859 1.975680 GGAGGTGTTTGTGGGAGAGTA 59.024 52.381 0.00 0.00 0.00 2.59
1284 1860 2.572104 GGAGGTGTTTGTGGGAGAGTAT 59.428 50.000 0.00 0.00 0.00 2.12
1313 1889 5.331876 ACTGATAAGCTCCTCAAGTACAC 57.668 43.478 0.00 0.00 0.00 2.90
1336 1912 4.038042 CAGCGGACAGGTAATCTTATCTCA 59.962 45.833 0.00 0.00 0.00 3.27
1357 1933 9.860650 ATCTCAGTACTAGATTGTGTTCTAGAT 57.139 33.333 13.83 3.31 45.37 1.98
1400 1977 8.424731 GGCTCGAATTTTATGTTTTAACACTTG 58.575 33.333 0.00 0.00 42.51 3.16
1415 1992 3.164268 ACACTTGATGCAAATGCCCTTA 58.836 40.909 2.46 0.00 41.18 2.69
1423 2000 3.763097 GCAAATGCCCTTAATTTTGCC 57.237 42.857 7.76 0.00 45.01 4.52
1427 2004 3.843893 ATGCCCTTAATTTTGCCATCC 57.156 42.857 0.00 0.00 0.00 3.51
1436 2013 6.407299 CCTTAATTTTGCCATCCTTATGCAGT 60.407 38.462 0.00 0.00 0.00 4.40
1457 2034 9.534565 TGCAGTGATAGATATCTGTTTTAGAAC 57.465 33.333 15.79 2.97 39.30 3.01
1523 2104 9.219603 CAAATCAACTGTAGAGTGAGGAATTTA 57.780 33.333 0.00 0.00 30.61 1.40
1568 2149 4.006989 TCTTGTGTTGGATAAATGTCCCG 58.993 43.478 0.00 0.00 37.48 5.14
1588 2169 9.435688 TGTCCCGATTATTATTATCAATGTCAG 57.564 33.333 0.00 0.00 0.00 3.51
1638 2219 6.749118 CAGCATTAGGTATCTTTGCTTGTTTC 59.251 38.462 9.71 0.00 38.42 2.78
1690 2271 7.040062 TGCTACCTTTACATTGCTATTGTGTTT 60.040 33.333 0.00 0.00 0.00 2.83
1702 2283 5.755861 TGCTATTGTGTTTTAAACCAAAGGC 59.244 36.000 18.96 18.96 31.96 4.35
1721 2302 6.603940 AAGGCAGCCACATATTTTCTTTTA 57.396 33.333 15.80 0.00 0.00 1.52
1744 2325 5.894807 ACAAAACTGAAGTTTCATGACTGG 58.105 37.500 8.80 0.00 46.47 4.00
1746 2327 3.864789 ACTGAAGTTTCATGACTGGGT 57.135 42.857 0.00 0.00 36.46 4.51
1759 2340 4.371624 TGACTGGGTTCAGATCAAATGT 57.628 40.909 0.00 0.00 43.49 2.71
1777 2358 0.321298 GTTGGGGTGTGCATACTCGT 60.321 55.000 13.64 0.00 0.00 4.18
1782 2363 1.636988 GGTGTGCATACTCGTACCAC 58.363 55.000 13.64 1.68 0.00 4.16
1803 2384 1.933853 GCTTCACGTCACAACTCAGTT 59.066 47.619 0.00 0.00 0.00 3.16
1810 2391 3.804325 ACGTCACAACTCAGTTGATTGAG 59.196 43.478 24.73 13.15 45.28 3.02
1848 2429 8.517878 CAAACCTTTGAGATGATATTGTTCACT 58.482 33.333 0.00 0.00 40.55 3.41
1857 2438 7.619050 AGATGATATTGTTCACTCAGTGACTT 58.381 34.615 7.12 0.00 42.60 3.01
1931 2512 6.846350 ACAGTGAAATAAAGCATTCTACTGC 58.154 36.000 0.00 0.00 42.62 4.40
1998 2584 5.789521 AGAGAGAGAAAAGCAAGAGTTACC 58.210 41.667 0.00 0.00 0.00 2.85
2032 2618 9.206870 CACCAGCAAGTTTGTTATTTGAAATAT 57.793 29.630 0.00 0.00 0.00 1.28
2064 2650 9.173021 CTGTAATTGTAACCATGTTCATTAGGA 57.827 33.333 0.00 0.00 0.00 2.94
2142 2911 5.367937 ACCTTGTGAAGTGCTATAGGATCAT 59.632 40.000 1.04 0.00 0.00 2.45
2163 2932 2.376518 TGAAAGAAGGATTGGCTGAGGT 59.623 45.455 0.00 0.00 0.00 3.85
2179 2948 2.307686 TGAGGTGATACCAAGGTTTCCC 59.692 50.000 0.00 3.47 41.95 3.97
2250 3019 6.263168 GGGGATTTGTATCAAGTCATTGGTAG 59.737 42.308 7.16 0.00 32.63 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.124403 GCACCCTCAGCTCCATGG 60.124 66.667 4.97 4.97 0.00 3.66
1 2 2.124403 GGCACCCTCAGCTCCATG 60.124 66.667 0.00 0.00 0.00 3.66
2 3 3.790437 CGGCACCCTCAGCTCCAT 61.790 66.667 0.00 0.00 0.00 3.41
14 15 3.426568 GAAGGACAGCAGCGGCAC 61.427 66.667 12.44 1.84 44.61 5.01
15 16 3.596066 GAGAAGGACAGCAGCGGCA 62.596 63.158 12.44 0.00 44.61 5.69
16 17 1.949847 TAGAGAAGGACAGCAGCGGC 61.950 60.000 0.00 0.00 41.61 6.53
17 18 0.179124 GTAGAGAAGGACAGCAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
18 19 0.814457 AGTAGAGAAGGACAGCAGCG 59.186 55.000 0.00 0.00 0.00 5.18
19 20 1.821753 TCAGTAGAGAAGGACAGCAGC 59.178 52.381 0.00 0.00 0.00 5.25
20 21 2.426738 CCTCAGTAGAGAAGGACAGCAG 59.573 54.545 0.00 0.00 44.98 4.24
21 22 2.041755 TCCTCAGTAGAGAAGGACAGCA 59.958 50.000 0.00 0.00 44.98 4.41
22 23 2.729194 TCCTCAGTAGAGAAGGACAGC 58.271 52.381 0.00 0.00 44.98 4.40
23 24 4.277476 ACATCCTCAGTAGAGAAGGACAG 58.723 47.826 0.00 0.00 44.98 3.51
24 25 4.274147 GACATCCTCAGTAGAGAAGGACA 58.726 47.826 0.00 0.00 44.98 4.02
25 26 3.314080 CGACATCCTCAGTAGAGAAGGAC 59.686 52.174 0.00 0.00 44.98 3.85
26 27 3.546724 CGACATCCTCAGTAGAGAAGGA 58.453 50.000 0.00 0.00 44.98 3.36
27 28 2.034053 GCGACATCCTCAGTAGAGAAGG 59.966 54.545 0.00 0.00 44.98 3.46
28 29 2.034053 GGCGACATCCTCAGTAGAGAAG 59.966 54.545 0.00 0.00 44.98 2.85
29 30 2.025155 GGCGACATCCTCAGTAGAGAA 58.975 52.381 0.00 0.00 44.98 2.87
30 31 1.681538 GGCGACATCCTCAGTAGAGA 58.318 55.000 0.00 0.00 44.98 3.10
31 32 0.309302 CGGCGACATCCTCAGTAGAG 59.691 60.000 0.00 0.00 41.72 2.43
32 33 1.725557 GCGGCGACATCCTCAGTAGA 61.726 60.000 12.98 0.00 0.00 2.59
33 34 1.299468 GCGGCGACATCCTCAGTAG 60.299 63.158 12.98 0.00 0.00 2.57
34 35 2.805546 GCGGCGACATCCTCAGTA 59.194 61.111 12.98 0.00 0.00 2.74
35 36 4.498520 CGCGGCGACATCCTCAGT 62.499 66.667 19.16 0.00 0.00 3.41
57 58 3.782244 GGCTTCGTCTGCGTGCAG 61.782 66.667 15.59 15.59 44.86 4.41
58 59 3.881952 ATGGCTTCGTCTGCGTGCA 62.882 57.895 0.00 0.00 39.09 4.57
59 60 3.088500 GATGGCTTCGTCTGCGTGC 62.089 63.158 0.00 0.00 39.49 5.34
60 61 1.086067 ATGATGGCTTCGTCTGCGTG 61.086 55.000 0.00 0.00 39.49 5.34
61 62 0.807667 GATGATGGCTTCGTCTGCGT 60.808 55.000 13.69 0.00 37.39 5.24
62 63 0.529337 AGATGATGGCTTCGTCTGCG 60.529 55.000 20.63 0.00 46.76 5.18
63 64 3.376218 AGATGATGGCTTCGTCTGC 57.624 52.632 20.63 0.00 46.76 4.26
74 75 3.274586 CGCCGTGCCCAGATGATG 61.275 66.667 0.00 0.00 0.00 3.07
75 76 4.552365 CCGCCGTGCCCAGATGAT 62.552 66.667 0.00 0.00 0.00 2.45
85 86 4.457496 ATGTCCTGAGCCGCCGTG 62.457 66.667 0.00 0.00 0.00 4.94
86 87 4.148825 GATGTCCTGAGCCGCCGT 62.149 66.667 0.00 0.00 0.00 5.68
88 89 3.838271 TCGATGTCCTGAGCCGCC 61.838 66.667 0.00 0.00 0.00 6.13
89 90 2.583593 GTCGATGTCCTGAGCCGC 60.584 66.667 0.00 0.00 0.00 6.53
90 91 2.278206 CGTCGATGTCCTGAGCCG 60.278 66.667 0.00 0.00 0.00 5.52
91 92 2.105128 CCGTCGATGTCCTGAGCC 59.895 66.667 3.52 0.00 0.00 4.70
92 93 2.583593 GCCGTCGATGTCCTGAGC 60.584 66.667 3.52 0.00 0.00 4.26
93 94 2.278206 CGCCGTCGATGTCCTGAG 60.278 66.667 3.52 0.00 38.10 3.35
94 95 2.748647 TCGCCGTCGATGTCCTGA 60.749 61.111 3.52 0.00 40.21 3.86
105 106 2.927580 AACCTGACGATGTCGCCGT 61.928 57.895 1.77 0.00 44.43 5.68
106 107 2.126071 AACCTGACGATGTCGCCG 60.126 61.111 1.77 0.00 44.43 6.46
107 108 2.100631 CCAACCTGACGATGTCGCC 61.101 63.158 1.77 0.00 44.43 5.54
108 109 1.078759 CTCCAACCTGACGATGTCGC 61.079 60.000 1.77 0.00 44.43 5.19
109 110 1.078759 GCTCCAACCTGACGATGTCG 61.079 60.000 0.11 0.11 46.33 4.35
110 111 0.037326 TGCTCCAACCTGACGATGTC 60.037 55.000 0.00 0.00 0.00 3.06
111 112 0.396435 TTGCTCCAACCTGACGATGT 59.604 50.000 0.00 0.00 0.00 3.06
112 113 1.081892 CTTGCTCCAACCTGACGATG 58.918 55.000 0.00 0.00 0.00 3.84
113 114 0.036010 CCTTGCTCCAACCTGACGAT 60.036 55.000 0.00 0.00 0.00 3.73
114 115 1.371183 CCTTGCTCCAACCTGACGA 59.629 57.895 0.00 0.00 0.00 4.20
115 116 2.328099 GCCTTGCTCCAACCTGACG 61.328 63.158 0.00 0.00 0.00 4.35
116 117 1.228245 TGCCTTGCTCCAACCTGAC 60.228 57.895 0.00 0.00 0.00 3.51
117 118 1.228245 GTGCCTTGCTCCAACCTGA 60.228 57.895 0.00 0.00 0.00 3.86
118 119 2.620112 CGTGCCTTGCTCCAACCTG 61.620 63.158 0.00 0.00 0.00 4.00
119 120 2.281761 CGTGCCTTGCTCCAACCT 60.282 61.111 0.00 0.00 0.00 3.50
120 121 3.365265 CCGTGCCTTGCTCCAACC 61.365 66.667 0.00 0.00 0.00 3.77
121 122 4.043200 GCCGTGCCTTGCTCCAAC 62.043 66.667 0.00 0.00 0.00 3.77
153 154 3.774959 CTGTTCTCGATCCCGCCGG 62.775 68.421 0.00 0.00 35.37 6.13
154 155 2.278857 CTGTTCTCGATCCCGCCG 60.279 66.667 0.00 0.00 35.37 6.46
155 156 2.107141 CCTGTTCTCGATCCCGCC 59.893 66.667 0.00 0.00 35.37 6.13
156 157 2.107141 CCCTGTTCTCGATCCCGC 59.893 66.667 0.00 0.00 35.37 6.13
157 158 2.797278 CCCCCTGTTCTCGATCCCG 61.797 68.421 0.00 0.00 37.07 5.14
158 159 0.764752 ATCCCCCTGTTCTCGATCCC 60.765 60.000 0.00 0.00 0.00 3.85
159 160 1.132500 AATCCCCCTGTTCTCGATCC 58.868 55.000 0.00 0.00 0.00 3.36
160 161 1.762957 TCAATCCCCCTGTTCTCGATC 59.237 52.381 0.00 0.00 0.00 3.69
161 162 1.765314 CTCAATCCCCCTGTTCTCGAT 59.235 52.381 0.00 0.00 0.00 3.59
162 163 1.195115 CTCAATCCCCCTGTTCTCGA 58.805 55.000 0.00 0.00 0.00 4.04
163 164 1.137872 CTCTCAATCCCCCTGTTCTCG 59.862 57.143 0.00 0.00 0.00 4.04
164 165 1.134250 GCTCTCAATCCCCCTGTTCTC 60.134 57.143 0.00 0.00 0.00 2.87
165 166 0.915364 GCTCTCAATCCCCCTGTTCT 59.085 55.000 0.00 0.00 0.00 3.01
166 167 0.620556 TGCTCTCAATCCCCCTGTTC 59.379 55.000 0.00 0.00 0.00 3.18
167 168 1.005215 CTTGCTCTCAATCCCCCTGTT 59.995 52.381 0.00 0.00 0.00 3.16
168 169 0.622665 CTTGCTCTCAATCCCCCTGT 59.377 55.000 0.00 0.00 0.00 4.00
169 170 0.106819 CCTTGCTCTCAATCCCCCTG 60.107 60.000 0.00 0.00 0.00 4.45
170 171 1.284841 CCCTTGCTCTCAATCCCCCT 61.285 60.000 0.00 0.00 0.00 4.79
171 172 1.228510 CCCTTGCTCTCAATCCCCC 59.771 63.158 0.00 0.00 0.00 5.40
172 173 1.228510 CCCCTTGCTCTCAATCCCC 59.771 63.158 0.00 0.00 0.00 4.81
173 174 1.228510 CCCCCTTGCTCTCAATCCC 59.771 63.158 0.00 0.00 0.00 3.85
174 175 0.332972 AACCCCCTTGCTCTCAATCC 59.667 55.000 0.00 0.00 0.00 3.01
175 176 1.004745 TCAACCCCCTTGCTCTCAATC 59.995 52.381 0.00 0.00 0.00 2.67
176 177 1.075601 TCAACCCCCTTGCTCTCAAT 58.924 50.000 0.00 0.00 0.00 2.57
177 178 1.075601 ATCAACCCCCTTGCTCTCAA 58.924 50.000 0.00 0.00 0.00 3.02
178 179 1.075601 AATCAACCCCCTTGCTCTCA 58.924 50.000 0.00 0.00 0.00 3.27
179 180 1.467920 CAATCAACCCCCTTGCTCTC 58.532 55.000 0.00 0.00 0.00 3.20
180 181 0.613012 GCAATCAACCCCCTTGCTCT 60.613 55.000 0.00 0.00 41.52 4.09
181 182 1.893062 GCAATCAACCCCCTTGCTC 59.107 57.895 0.00 0.00 41.52 4.26
182 183 4.118584 GCAATCAACCCCCTTGCT 57.881 55.556 0.00 0.00 41.52 3.91
183 184 0.686789 AAAGCAATCAACCCCCTTGC 59.313 50.000 0.00 0.00 44.31 4.01
184 185 3.490439 AAAAAGCAATCAACCCCCTTG 57.510 42.857 0.00 0.00 0.00 3.61
185 186 5.841267 AATAAAAAGCAATCAACCCCCTT 57.159 34.783 0.00 0.00 0.00 3.95
186 187 5.841267 AAATAAAAAGCAATCAACCCCCT 57.159 34.783 0.00 0.00 0.00 4.79
187 188 6.892658 AAAAATAAAAAGCAATCAACCCCC 57.107 33.333 0.00 0.00 0.00 5.40
188 189 8.840833 TCTAAAAATAAAAAGCAATCAACCCC 57.159 30.769 0.00 0.00 0.00 4.95
193 194 9.874205 CCTGGATCTAAAAATAAAAAGCAATCA 57.126 29.630 0.00 0.00 0.00 2.57
194 195 9.317936 CCCTGGATCTAAAAATAAAAAGCAATC 57.682 33.333 0.00 0.00 0.00 2.67
195 196 8.267183 CCCCTGGATCTAAAAATAAAAAGCAAT 58.733 33.333 0.00 0.00 0.00 3.56
196 197 7.236640 ACCCCTGGATCTAAAAATAAAAAGCAA 59.763 33.333 0.00 0.00 0.00 3.91
197 198 6.728632 ACCCCTGGATCTAAAAATAAAAAGCA 59.271 34.615 0.00 0.00 0.00 3.91
198 199 7.041721 CACCCCTGGATCTAAAAATAAAAAGC 58.958 38.462 0.00 0.00 0.00 3.51
199 200 8.034804 CACACCCCTGGATCTAAAAATAAAAAG 58.965 37.037 0.00 0.00 0.00 2.27
200 201 7.511028 ACACACCCCTGGATCTAAAAATAAAAA 59.489 33.333 0.00 0.00 0.00 1.94
201 202 7.013834 ACACACCCCTGGATCTAAAAATAAAA 58.986 34.615 0.00 0.00 0.00 1.52
202 203 6.557568 ACACACCCCTGGATCTAAAAATAAA 58.442 36.000 0.00 0.00 0.00 1.40
203 204 6.147437 ACACACCCCTGGATCTAAAAATAA 57.853 37.500 0.00 0.00 0.00 1.40
204 205 5.789574 ACACACCCCTGGATCTAAAAATA 57.210 39.130 0.00 0.00 0.00 1.40
205 206 4.675063 ACACACCCCTGGATCTAAAAAT 57.325 40.909 0.00 0.00 0.00 1.82
206 207 5.251932 TCATACACACCCCTGGATCTAAAAA 59.748 40.000 0.00 0.00 0.00 1.94
207 208 4.785914 TCATACACACCCCTGGATCTAAAA 59.214 41.667 0.00 0.00 0.00 1.52
208 209 4.163458 GTCATACACACCCCTGGATCTAAA 59.837 45.833 0.00 0.00 0.00 1.85
209 210 3.709653 GTCATACACACCCCTGGATCTAA 59.290 47.826 0.00 0.00 0.00 2.10
210 211 3.305720 GTCATACACACCCCTGGATCTA 58.694 50.000 0.00 0.00 0.00 1.98
211 212 2.119495 GTCATACACACCCCTGGATCT 58.881 52.381 0.00 0.00 0.00 2.75
212 213 1.837439 TGTCATACACACCCCTGGATC 59.163 52.381 0.00 0.00 0.00 3.36
213 214 1.965414 TGTCATACACACCCCTGGAT 58.035 50.000 0.00 0.00 0.00 3.41
214 215 1.965414 ATGTCATACACACCCCTGGA 58.035 50.000 0.00 0.00 38.04 3.86
215 216 2.806945 AATGTCATACACACCCCTGG 57.193 50.000 0.00 0.00 38.04 4.45
216 217 4.487714 ACTAATGTCATACACACCCCTG 57.512 45.455 0.00 0.00 38.04 4.45
217 218 5.253330 CAAACTAATGTCATACACACCCCT 58.747 41.667 0.00 0.00 38.04 4.79
218 219 4.142469 GCAAACTAATGTCATACACACCCC 60.142 45.833 0.00 0.00 38.04 4.95
219 220 4.142469 GGCAAACTAATGTCATACACACCC 60.142 45.833 0.00 0.00 38.04 4.61
220 221 4.457603 TGGCAAACTAATGTCATACACACC 59.542 41.667 0.00 0.00 38.04 4.16
221 222 5.621197 TGGCAAACTAATGTCATACACAC 57.379 39.130 0.00 0.00 38.04 3.82
222 223 5.767665 ACTTGGCAAACTAATGTCATACACA 59.232 36.000 0.00 0.00 40.18 3.72
223 224 6.072728 TGACTTGGCAAACTAATGTCATACAC 60.073 38.462 12.11 0.00 34.38 2.90
224 225 6.000840 TGACTTGGCAAACTAATGTCATACA 58.999 36.000 12.11 0.00 34.38 2.29
225 226 6.494893 TGACTTGGCAAACTAATGTCATAC 57.505 37.500 12.11 0.00 34.38 2.39
226 227 5.123820 GCTGACTTGGCAAACTAATGTCATA 59.876 40.000 15.32 0.00 34.38 2.15
227 228 4.082571 GCTGACTTGGCAAACTAATGTCAT 60.083 41.667 15.32 0.00 34.38 3.06
228 229 3.253188 GCTGACTTGGCAAACTAATGTCA 59.747 43.478 14.50 14.50 31.99 3.58
229 230 3.503748 AGCTGACTTGGCAAACTAATGTC 59.496 43.478 0.00 4.76 0.00 3.06
230 231 3.490348 AGCTGACTTGGCAAACTAATGT 58.510 40.909 0.00 0.00 0.00 2.71
231 232 3.755378 AGAGCTGACTTGGCAAACTAATG 59.245 43.478 0.00 0.00 0.00 1.90
232 233 4.026356 AGAGCTGACTTGGCAAACTAAT 57.974 40.909 0.00 0.00 0.00 1.73
233 234 3.492102 AGAGCTGACTTGGCAAACTAA 57.508 42.857 0.00 0.00 0.00 2.24
234 235 3.141398 CAAGAGCTGACTTGGCAAACTA 58.859 45.455 0.00 0.00 42.17 2.24
235 236 1.952296 CAAGAGCTGACTTGGCAAACT 59.048 47.619 0.00 0.00 42.17 2.66
236 237 1.949525 TCAAGAGCTGACTTGGCAAAC 59.050 47.619 13.54 0.00 44.84 2.93
237 238 2.346766 TCAAGAGCTGACTTGGCAAA 57.653 45.000 13.54 0.00 44.84 3.68
246 247 2.659016 CCGGCTGTCAAGAGCTGA 59.341 61.111 9.40 0.00 46.76 4.26
247 248 2.435586 CCCGGCTGTCAAGAGCTG 60.436 66.667 0.00 1.10 43.90 4.24
248 249 4.400961 GCCCGGCTGTCAAGAGCT 62.401 66.667 0.71 0.00 39.11 4.09
250 251 3.672295 GAGGCCCGGCTGTCAAGAG 62.672 68.421 9.86 0.00 0.00 2.85
251 252 3.706373 GAGGCCCGGCTGTCAAGA 61.706 66.667 9.86 0.00 0.00 3.02
252 253 4.020617 TGAGGCCCGGCTGTCAAG 62.021 66.667 9.86 0.00 0.00 3.02
253 254 4.329545 GTGAGGCCCGGCTGTCAA 62.330 66.667 9.86 0.00 0.00 3.18
255 256 4.021925 AAGTGAGGCCCGGCTGTC 62.022 66.667 9.86 7.34 0.00 3.51
256 257 4.335647 CAAGTGAGGCCCGGCTGT 62.336 66.667 9.86 0.00 0.00 4.40
257 258 4.335647 ACAAGTGAGGCCCGGCTG 62.336 66.667 9.86 0.53 0.00 4.85
258 259 4.021925 GACAAGTGAGGCCCGGCT 62.022 66.667 9.86 0.00 0.00 5.52
259 260 4.329545 TGACAAGTGAGGCCCGGC 62.330 66.667 0.00 0.00 0.00 6.13
260 261 2.046892 CTGACAAGTGAGGCCCGG 60.047 66.667 0.00 0.00 0.00 5.73
261 262 0.250295 TTTCTGACAAGTGAGGCCCG 60.250 55.000 0.00 0.00 0.00 6.13
262 263 1.528129 CTTTCTGACAAGTGAGGCCC 58.472 55.000 0.00 0.00 0.00 5.80
263 264 0.877743 GCTTTCTGACAAGTGAGGCC 59.122 55.000 0.00 0.00 0.00 5.19
264 265 0.514691 CGCTTTCTGACAAGTGAGGC 59.485 55.000 7.09 0.00 36.53 4.70
265 266 2.154854 TCGCTTTCTGACAAGTGAGG 57.845 50.000 9.96 0.00 38.18 3.86
266 267 3.320626 TGATCGCTTTCTGACAAGTGAG 58.679 45.455 15.62 0.00 44.48 3.51
267 268 3.385193 TGATCGCTTTCTGACAAGTGA 57.615 42.857 13.93 13.93 45.16 3.41
268 269 4.461405 CTTTGATCGCTTTCTGACAAGTG 58.539 43.478 6.74 6.74 35.87 3.16
269 270 3.499918 CCTTTGATCGCTTTCTGACAAGT 59.500 43.478 0.00 0.00 0.00 3.16
270 271 3.120060 CCCTTTGATCGCTTTCTGACAAG 60.120 47.826 0.00 0.00 0.00 3.16
271 272 2.813754 CCCTTTGATCGCTTTCTGACAA 59.186 45.455 0.00 0.00 0.00 3.18
272 273 2.038426 TCCCTTTGATCGCTTTCTGACA 59.962 45.455 0.00 0.00 0.00 3.58
273 274 2.416893 GTCCCTTTGATCGCTTTCTGAC 59.583 50.000 0.00 0.00 0.00 3.51
274 275 2.615493 GGTCCCTTTGATCGCTTTCTGA 60.615 50.000 0.00 0.00 0.00 3.27
275 276 1.740025 GGTCCCTTTGATCGCTTTCTG 59.260 52.381 0.00 0.00 0.00 3.02
276 277 1.351017 TGGTCCCTTTGATCGCTTTCT 59.649 47.619 0.00 0.00 0.00 2.52
277 278 1.821216 TGGTCCCTTTGATCGCTTTC 58.179 50.000 0.00 0.00 0.00 2.62
278 279 2.286365 TTGGTCCCTTTGATCGCTTT 57.714 45.000 0.00 0.00 0.00 3.51
279 280 2.286365 TTTGGTCCCTTTGATCGCTT 57.714 45.000 0.00 0.00 0.00 4.68
280 281 2.290896 TGATTTGGTCCCTTTGATCGCT 60.291 45.455 0.00 0.00 0.00 4.93
281 282 2.091541 TGATTTGGTCCCTTTGATCGC 58.908 47.619 0.00 0.00 0.00 4.58
282 283 2.423538 GGTGATTTGGTCCCTTTGATCG 59.576 50.000 0.00 0.00 0.00 3.69
283 284 2.760650 GGGTGATTTGGTCCCTTTGATC 59.239 50.000 0.00 0.00 38.29 2.92
284 285 2.820178 GGGTGATTTGGTCCCTTTGAT 58.180 47.619 0.00 0.00 38.29 2.57
285 286 1.546773 CGGGTGATTTGGTCCCTTTGA 60.547 52.381 0.00 0.00 39.10 2.69
286 287 0.887933 CGGGTGATTTGGTCCCTTTG 59.112 55.000 0.00 0.00 39.10 2.77
287 288 0.774908 TCGGGTGATTTGGTCCCTTT 59.225 50.000 0.00 0.00 39.10 3.11
288 289 0.999712 ATCGGGTGATTTGGTCCCTT 59.000 50.000 0.00 0.00 39.10 3.95
289 290 0.546598 GATCGGGTGATTTGGTCCCT 59.453 55.000 0.00 0.00 39.10 4.20
290 291 0.254747 TGATCGGGTGATTTGGTCCC 59.745 55.000 0.00 0.00 34.09 4.46
291 292 1.065418 ACTGATCGGGTGATTTGGTCC 60.065 52.381 6.47 0.00 34.09 4.46
292 293 2.009774 CACTGATCGGGTGATTTGGTC 58.990 52.381 6.47 0.00 36.89 4.02
293 294 1.950484 GCACTGATCGGGTGATTTGGT 60.950 52.381 18.69 0.00 36.89 3.67
294 295 0.734889 GCACTGATCGGGTGATTTGG 59.265 55.000 18.69 0.00 36.89 3.28
295 296 1.742761 AGCACTGATCGGGTGATTTG 58.257 50.000 18.69 3.53 36.89 2.32
296 297 2.496899 AAGCACTGATCGGGTGATTT 57.503 45.000 18.69 10.90 39.77 2.17
297 298 2.496899 AAAGCACTGATCGGGTGATT 57.503 45.000 18.69 16.21 43.67 2.57
298 299 2.489329 CAAAAAGCACTGATCGGGTGAT 59.511 45.455 18.69 11.87 36.89 3.06
299 300 1.879380 CAAAAAGCACTGATCGGGTGA 59.121 47.619 18.69 0.00 36.89 4.02
300 301 1.666888 GCAAAAAGCACTGATCGGGTG 60.667 52.381 6.47 10.07 44.79 4.61
301 302 0.598065 GCAAAAAGCACTGATCGGGT 59.402 50.000 6.47 0.00 44.79 5.28
302 303 3.406682 GCAAAAAGCACTGATCGGG 57.593 52.632 6.47 0.00 44.79 5.14
317 318 9.391006 ACCGTAAAATCTCTAATCTTATTGCAA 57.609 29.630 0.00 0.00 0.00 4.08
318 319 8.826710 CACCGTAAAATCTCTAATCTTATTGCA 58.173 33.333 0.00 0.00 0.00 4.08
319 320 8.827677 ACACCGTAAAATCTCTAATCTTATTGC 58.172 33.333 0.00 0.00 0.00 3.56
346 347 5.277825 CAAGTCACTAATCCGTTGCAAAAA 58.722 37.500 0.00 0.00 0.00 1.94
347 348 4.261405 CCAAGTCACTAATCCGTTGCAAAA 60.261 41.667 0.00 0.00 0.00 2.44
348 349 3.252215 CCAAGTCACTAATCCGTTGCAAA 59.748 43.478 0.00 0.00 0.00 3.68
349 350 2.811431 CCAAGTCACTAATCCGTTGCAA 59.189 45.455 0.00 0.00 0.00 4.08
350 351 2.224426 ACCAAGTCACTAATCCGTTGCA 60.224 45.455 0.00 0.00 0.00 4.08
351 352 2.159627 CACCAAGTCACTAATCCGTTGC 59.840 50.000 0.00 0.00 0.00 4.17
352 353 2.742053 CCACCAAGTCACTAATCCGTTG 59.258 50.000 0.00 0.00 0.00 4.10
353 354 2.370849 ACCACCAAGTCACTAATCCGTT 59.629 45.455 0.00 0.00 0.00 4.44
354 355 1.975680 ACCACCAAGTCACTAATCCGT 59.024 47.619 0.00 0.00 0.00 4.69
355 356 2.762535 ACCACCAAGTCACTAATCCG 57.237 50.000 0.00 0.00 0.00 4.18
356 357 5.048713 CAGAAAACCACCAAGTCACTAATCC 60.049 44.000 0.00 0.00 0.00 3.01
357 358 5.562890 GCAGAAAACCACCAAGTCACTAATC 60.563 44.000 0.00 0.00 0.00 1.75
358 359 4.278419 GCAGAAAACCACCAAGTCACTAAT 59.722 41.667 0.00 0.00 0.00 1.73
359 360 3.630312 GCAGAAAACCACCAAGTCACTAA 59.370 43.478 0.00 0.00 0.00 2.24
360 361 3.211045 GCAGAAAACCACCAAGTCACTA 58.789 45.455 0.00 0.00 0.00 2.74
361 362 2.024414 GCAGAAAACCACCAAGTCACT 58.976 47.619 0.00 0.00 0.00 3.41
362 363 1.748493 TGCAGAAAACCACCAAGTCAC 59.252 47.619 0.00 0.00 0.00 3.67
363 364 2.136298 TGCAGAAAACCACCAAGTCA 57.864 45.000 0.00 0.00 0.00 3.41
364 365 3.186909 GTTTGCAGAAAACCACCAAGTC 58.813 45.455 0.00 0.00 42.06 3.01
365 366 3.245518 GTTTGCAGAAAACCACCAAGT 57.754 42.857 0.00 0.00 42.06 3.16
373 374 1.666023 GCGGCTAGGTTTGCAGAAAAC 60.666 52.381 0.00 0.00 46.32 2.43
374 375 0.596082 GCGGCTAGGTTTGCAGAAAA 59.404 50.000 0.00 0.00 0.00 2.29
375 376 0.536233 TGCGGCTAGGTTTGCAGAAA 60.536 50.000 0.00 0.00 32.73 2.52
376 377 0.536233 TTGCGGCTAGGTTTGCAGAA 60.536 50.000 0.00 0.00 38.75 3.02
377 378 0.536233 TTTGCGGCTAGGTTTGCAGA 60.536 50.000 0.00 0.00 38.75 4.26
378 379 0.527565 ATTTGCGGCTAGGTTTGCAG 59.472 50.000 0.00 0.00 38.75 4.41
379 380 0.243365 CATTTGCGGCTAGGTTTGCA 59.757 50.000 0.00 0.00 35.15 4.08
380 381 0.243636 ACATTTGCGGCTAGGTTTGC 59.756 50.000 0.00 0.00 0.00 3.68
381 382 1.402720 CCACATTTGCGGCTAGGTTTG 60.403 52.381 0.00 0.00 0.00 2.93
382 383 0.887933 CCACATTTGCGGCTAGGTTT 59.112 50.000 0.00 0.00 0.00 3.27
383 384 0.251165 ACCACATTTGCGGCTAGGTT 60.251 50.000 0.00 0.00 0.00 3.50
384 385 0.616371 TACCACATTTGCGGCTAGGT 59.384 50.000 0.00 0.00 0.00 3.08
385 386 1.299541 CTACCACATTTGCGGCTAGG 58.700 55.000 0.00 0.00 0.00 3.02
386 387 2.024176 ACTACCACATTTGCGGCTAG 57.976 50.000 0.00 0.00 0.00 3.42
387 388 2.483014 AACTACCACATTTGCGGCTA 57.517 45.000 0.00 0.00 0.00 3.93
388 389 1.539827 GAAACTACCACATTTGCGGCT 59.460 47.619 0.00 0.00 0.00 5.52
389 390 1.539827 AGAAACTACCACATTTGCGGC 59.460 47.619 0.00 0.00 0.00 6.53
390 391 3.564511 CAAGAAACTACCACATTTGCGG 58.435 45.455 0.00 0.00 0.00 5.69
391 392 2.979813 GCAAGAAACTACCACATTTGCG 59.020 45.455 0.00 0.00 31.52 4.85
392 393 3.976169 TGCAAGAAACTACCACATTTGC 58.024 40.909 0.00 0.00 39.72 3.68
393 394 6.700960 TCAATTGCAAGAAACTACCACATTTG 59.299 34.615 4.94 0.00 0.00 2.32
394 395 6.701400 GTCAATTGCAAGAAACTACCACATTT 59.299 34.615 4.94 0.00 0.00 2.32
395 396 6.040842 AGTCAATTGCAAGAAACTACCACATT 59.959 34.615 4.94 0.00 0.00 2.71
396 397 5.536161 AGTCAATTGCAAGAAACTACCACAT 59.464 36.000 4.94 0.00 0.00 3.21
397 398 4.887071 AGTCAATTGCAAGAAACTACCACA 59.113 37.500 4.94 0.00 0.00 4.17
398 399 5.438761 AGTCAATTGCAAGAAACTACCAC 57.561 39.130 4.94 0.00 0.00 4.16
399 400 4.213270 CGAGTCAATTGCAAGAAACTACCA 59.787 41.667 4.94 0.00 0.00 3.25
400 401 4.213482 ACGAGTCAATTGCAAGAAACTACC 59.787 41.667 4.94 0.00 0.00 3.18
401 402 5.344207 ACGAGTCAATTGCAAGAAACTAC 57.656 39.130 4.94 0.00 0.00 2.73
402 403 6.145534 CACTACGAGTCAATTGCAAGAAACTA 59.854 38.462 4.94 0.00 0.00 2.24
403 404 5.050091 CACTACGAGTCAATTGCAAGAAACT 60.050 40.000 4.94 7.67 0.00 2.66
404 405 5.140177 CACTACGAGTCAATTGCAAGAAAC 58.860 41.667 4.94 2.49 0.00 2.78
405 406 4.213270 CCACTACGAGTCAATTGCAAGAAA 59.787 41.667 4.94 0.00 0.00 2.52
406 407 3.745975 CCACTACGAGTCAATTGCAAGAA 59.254 43.478 4.94 0.00 0.00 2.52
407 408 3.006430 TCCACTACGAGTCAATTGCAAGA 59.994 43.478 4.94 0.00 0.00 3.02
408 409 3.325870 TCCACTACGAGTCAATTGCAAG 58.674 45.455 4.94 0.00 0.00 4.01
409 410 3.394674 TCCACTACGAGTCAATTGCAA 57.605 42.857 0.00 0.00 0.00 4.08
410 411 3.261580 CATCCACTACGAGTCAATTGCA 58.738 45.455 0.00 0.00 0.00 4.08
411 412 2.609459 CCATCCACTACGAGTCAATTGC 59.391 50.000 0.00 0.00 0.00 3.56
412 413 4.123497 TCCATCCACTACGAGTCAATTG 57.877 45.455 0.00 0.00 0.00 2.32
413 414 4.697514 CATCCATCCACTACGAGTCAATT 58.302 43.478 0.00 0.00 0.00 2.32
414 415 3.493350 GCATCCATCCACTACGAGTCAAT 60.493 47.826 0.00 0.00 0.00 2.57
415 416 2.159099 GCATCCATCCACTACGAGTCAA 60.159 50.000 0.00 0.00 0.00 3.18
416 417 1.409064 GCATCCATCCACTACGAGTCA 59.591 52.381 0.00 0.00 0.00 3.41
417 418 1.683917 AGCATCCATCCACTACGAGTC 59.316 52.381 0.00 0.00 0.00 3.36
418 419 1.781786 AGCATCCATCCACTACGAGT 58.218 50.000 0.00 0.00 0.00 4.18
419 420 2.159043 ACAAGCATCCATCCACTACGAG 60.159 50.000 0.00 0.00 0.00 4.18
420 421 1.831106 ACAAGCATCCATCCACTACGA 59.169 47.619 0.00 0.00 0.00 3.43
421 422 2.315925 ACAAGCATCCATCCACTACG 57.684 50.000 0.00 0.00 0.00 3.51
465 466 1.066002 GCTGACACATGCACACAGTTT 59.934 47.619 0.00 0.00 0.00 2.66
583 584 4.561938 CCCCAATGCATTATGCCTTATGTG 60.562 45.833 12.53 0.20 44.23 3.21
584 585 3.579586 CCCCAATGCATTATGCCTTATGT 59.420 43.478 12.53 0.00 44.23 2.29
585 586 3.579586 ACCCCAATGCATTATGCCTTATG 59.420 43.478 12.53 7.96 44.23 1.90
639 1213 2.793790 GCATCATCTCTTAGTGCAGTCG 59.206 50.000 0.00 0.00 35.93 4.18
640 1214 3.790091 TGCATCATCTCTTAGTGCAGTC 58.210 45.455 0.00 0.00 40.51 3.51
705 1279 5.834204 GTCCCCAGTCACTATACAAGAGTAT 59.166 44.000 0.00 0.00 43.23 2.12
749 1323 6.363357 GCTGTTAATTTGCAGTAAACTGAAGG 59.637 38.462 14.21 0.00 46.59 3.46
758 1332 2.095466 GGCACGCTGTTAATTTGCAGTA 60.095 45.455 9.64 0.00 34.76 2.74
774 1348 2.930385 ATCAATGGAGGCGAGGCACG 62.930 60.000 0.00 0.00 45.66 5.34
776 1350 0.749091 CAATCAATGGAGGCGAGGCA 60.749 55.000 0.00 0.00 0.00 4.75
777 1351 0.749454 ACAATCAATGGAGGCGAGGC 60.749 55.000 0.00 0.00 0.00 4.70
778 1352 1.019673 CACAATCAATGGAGGCGAGG 58.980 55.000 0.00 0.00 0.00 4.63
779 1353 0.379669 GCACAATCAATGGAGGCGAG 59.620 55.000 0.00 0.00 0.00 5.03
780 1354 1.031571 GGCACAATCAATGGAGGCGA 61.032 55.000 0.00 0.00 0.00 5.54
781 1355 1.033746 AGGCACAATCAATGGAGGCG 61.034 55.000 0.00 0.00 38.30 5.52
782 1356 2.057137 TAGGCACAATCAATGGAGGC 57.943 50.000 0.00 0.00 35.07 4.70
790 1364 2.877097 TGGAGCTTTAGGCACAATCA 57.123 45.000 0.00 0.00 44.79 2.57
833 1407 7.860373 CACCTGAATATTTTTCTTCGTTTGACA 59.140 33.333 0.00 0.00 0.00 3.58
834 1408 7.148967 GCACCTGAATATTTTTCTTCGTTTGAC 60.149 37.037 0.00 0.00 0.00 3.18
838 1412 6.016276 ACTGCACCTGAATATTTTTCTTCGTT 60.016 34.615 0.00 0.00 0.00 3.85
859 1433 0.813821 GGCCAGGAAGATGAAACTGC 59.186 55.000 0.00 0.00 0.00 4.40
863 1437 0.332632 CCAGGGCCAGGAAGATGAAA 59.667 55.000 9.87 0.00 0.00 2.69
950 1526 4.650754 AGATTATTACTATAGCCGCCCG 57.349 45.455 0.00 0.00 0.00 6.13
954 1530 8.827177 TGGAAACAAGATTATTACTATAGCCG 57.173 34.615 0.00 0.00 37.44 5.52
977 1553 0.250901 CTGGGGACACCTGAAACTGG 60.251 60.000 0.00 0.00 40.42 4.00
989 1565 0.392595 GACGTCCATTTCCTGGGGAC 60.393 60.000 3.51 9.16 45.98 4.46
1060 1636 6.441604 AGATTGGCAAAAATTGAATAGAGGGT 59.558 34.615 3.01 0.00 0.00 4.34
1079 1655 2.700897 AGATCAACGACCCCTAGATTGG 59.299 50.000 0.00 0.00 0.00 3.16
1080 1656 4.100189 AGAAGATCAACGACCCCTAGATTG 59.900 45.833 0.00 0.00 0.00 2.67
1104 1680 2.433646 AAACAAGGCCCGCACCCATA 62.434 55.000 0.00 0.00 0.00 2.74
1160 1736 0.936600 CATGTGCACGATTCGCCATA 59.063 50.000 13.13 2.78 0.00 2.74
1204 1780 1.336702 TGCCCGCAAATCATTTGTGTC 60.337 47.619 19.85 12.63 46.77 3.67
1207 1783 2.289569 ACATTGCCCGCAAATCATTTGT 60.290 40.909 11.80 2.42 42.56 2.83
1237 1813 2.808543 GCCCATCAGAACGGTCAATATC 59.191 50.000 1.87 0.00 0.00 1.63
1238 1814 2.806745 CGCCCATCAGAACGGTCAATAT 60.807 50.000 1.87 0.00 0.00 1.28
1242 1818 2.264480 CGCCCATCAGAACGGTCA 59.736 61.111 1.87 0.00 0.00 4.02
1254 1830 2.534396 AAACACCTCCATCCGCCCA 61.534 57.895 0.00 0.00 0.00 5.36
1283 1859 8.325046 ACTTGAGGAGCTTATCAGTAAGAAAAT 58.675 33.333 0.00 0.00 39.77 1.82
1284 1860 7.680730 ACTTGAGGAGCTTATCAGTAAGAAAA 58.319 34.615 0.00 0.00 39.77 2.29
1313 1889 4.038042 TGAGATAAGATTACCTGTCCGCTG 59.962 45.833 0.00 0.00 0.00 5.18
1378 1954 9.726034 GCATCAAGTGTTAAAACATAAAATTCG 57.274 29.630 0.00 0.00 41.59 3.34
1409 1986 3.912496 AAGGATGGCAAAATTAAGGGC 57.088 42.857 0.00 0.00 0.00 5.19
1415 1992 4.467082 TCACTGCATAAGGATGGCAAAATT 59.533 37.500 0.00 0.00 33.26 1.82
1423 2000 8.476447 ACAGATATCTATCACTGCATAAGGATG 58.524 37.037 4.54 0.00 35.17 3.51
1534 2115 9.753674 TTATCCAACACAAGAAGAATTATCCTT 57.246 29.630 0.00 0.00 0.00 3.36
1535 2116 9.753674 TTTATCCAACACAAGAAGAATTATCCT 57.246 29.630 0.00 0.00 0.00 3.24
1608 2189 8.623903 CAAGCAAAGATACCTAATGCTGAAATA 58.376 33.333 0.00 0.00 41.77 1.40
1618 2199 8.512138 GCTTTAGAAACAAGCAAAGATACCTAA 58.488 33.333 0.00 0.00 45.19 2.69
1645 2226 6.753744 GGTAGCATCAAGAAGCCTTTTATTTG 59.246 38.462 0.00 0.00 0.00 2.32
1648 2229 5.760131 AGGTAGCATCAAGAAGCCTTTTAT 58.240 37.500 0.00 0.00 0.00 1.40
1662 2243 7.134815 CACAATAGCAATGTAAAGGTAGCATC 58.865 38.462 0.00 0.00 0.00 3.91
1690 2271 1.781786 TGTGGCTGCCTTTGGTTTAA 58.218 45.000 21.03 0.00 0.00 1.52
1702 2283 9.260002 AGTTTTGTAAAAGAAAATATGTGGCTG 57.740 29.630 0.00 0.00 0.00 4.85
1734 2315 4.639078 TTGATCTGAACCCAGTCATGAA 57.361 40.909 0.00 0.00 41.16 2.57
1736 2317 4.703575 ACATTTGATCTGAACCCAGTCATG 59.296 41.667 0.00 0.00 41.16 3.07
1737 2318 4.927049 ACATTTGATCTGAACCCAGTCAT 58.073 39.130 0.00 0.00 41.16 3.06
1744 2325 3.056607 CACCCCAACATTTGATCTGAACC 60.057 47.826 0.00 0.00 0.00 3.62
1746 2327 3.573538 CACACCCCAACATTTGATCTGAA 59.426 43.478 0.00 0.00 0.00 3.02
1759 2340 1.066716 GTACGAGTATGCACACCCCAA 60.067 52.381 0.00 0.00 0.00 4.12
1782 2363 5.635599 CAACTGAGTTGTGACGTGAAGCG 62.636 52.174 16.84 0.00 41.27 4.68
1803 2384 6.944290 AGGTTTGATGATGAAAGACTCAATCA 59.056 34.615 0.00 0.00 37.67 2.57
1810 2391 7.206981 TCTCAAAGGTTTGATGATGAAAGAC 57.793 36.000 5.63 0.00 45.26 3.01
1841 2422 5.368145 AGCAATAAAGTCACTGAGTGAACA 58.632 37.500 18.01 3.10 44.49 3.18
1883 2464 5.682943 TCCGTGAAAAGAAACATTAGTGG 57.317 39.130 0.00 0.00 0.00 4.00
1917 2498 6.830873 AAAAGAGATGCAGTAGAATGCTTT 57.169 33.333 3.41 0.00 46.63 3.51
1980 2561 6.963049 TTATCGGTAACTCTTGCTTTTCTC 57.037 37.500 0.00 0.00 0.00 2.87
1982 2563 5.965918 GCATTATCGGTAACTCTTGCTTTTC 59.034 40.000 4.81 0.00 0.00 2.29
2032 2618 5.804639 ACATGGTTACAATTACAGAGCTCA 58.195 37.500 17.77 0.00 0.00 4.26
2064 2650 1.986413 CACCTGCCTCTTAGCACCT 59.014 57.895 0.00 0.00 38.00 4.00
2142 2911 2.376518 ACCTCAGCCAATCCTTCTTTCA 59.623 45.455 0.00 0.00 0.00 2.69
2179 2948 0.809241 GCACGATCTTCTCCAGCAGG 60.809 60.000 0.00 0.00 0.00 4.85
2250 3019 3.740590 CACTCGAGTTGATTGCATGTTC 58.259 45.455 17.26 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.