Multiple sequence alignment - TraesCS7D01G319700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G319700 chr7D 100.000 2602 0 0 1 2602 409455908 409458509 0.000000e+00 4806
1 TraesCS7D01G319700 chr7D 95.402 87 3 1 1820 1906 409457641 409457726 1.260000e-28 137
2 TraesCS7D01G319700 chr7D 95.402 87 3 1 1734 1819 409457727 409457813 1.260000e-28 137
3 TraesCS7D01G319700 chr7A 96.807 1754 33 7 865 2602 469984002 469985748 0.000000e+00 2907
4 TraesCS7D01G319700 chr7A 97.167 706 14 3 116 817 469982948 469983651 0.000000e+00 1188
5 TraesCS7D01G319700 chr7A 92.188 128 9 1 1 127 116528910 116529037 2.060000e-41 180
6 TraesCS7D01G319700 chr7A 91.765 85 2 3 1734 1817 469984961 469985041 2.120000e-21 113
7 TraesCS7D01G319700 chr7B 95.101 939 17 5 912 1824 423766157 423767092 0.000000e+00 1452
8 TraesCS7D01G319700 chr7B 96.645 775 20 2 123 891 423764988 423765762 0.000000e+00 1282
9 TraesCS7D01G319700 chr7B 95.208 793 24 2 1824 2602 423767198 423767990 0.000000e+00 1242
10 TraesCS7D01G319700 chr7B 96.522 115 4 0 1 115 470847442 470847556 9.500000e-45 191
11 TraesCS7D01G319700 chr7B 97.333 75 1 1 1820 1894 423767005 423767078 2.720000e-25 126
12 TraesCS7D01G319700 chr7B 93.976 83 5 0 1737 1819 423767198 423767280 2.720000e-25 126
13 TraesCS7D01G319700 chr1B 97.345 113 2 1 1 113 520364481 520364370 9.500000e-45 191
14 TraesCS7D01G319700 chr6B 96.491 114 4 0 1 114 653218593 653218480 3.420000e-44 189
15 TraesCS7D01G319700 chr6D 95.690 116 3 1 1 116 84239397 84239284 4.420000e-43 185
16 TraesCS7D01G319700 chr5D 94.828 116 6 0 1 116 9407164 9407279 5.720000e-42 182
17 TraesCS7D01G319700 chr1D 94.872 117 5 1 1 116 19004219 19004335 5.720000e-42 182
18 TraesCS7D01G319700 chr1A 94.783 115 6 0 1 115 418067650 418067536 2.060000e-41 180
19 TraesCS7D01G319700 chr1A 94.068 118 5 1 1 118 568523882 568523997 7.400000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G319700 chr7D 409455908 409458509 2601 False 1693.333333 4806 96.934667 1 2602 3 chr7D.!!$F1 2601
1 TraesCS7D01G319700 chr7A 469982948 469985748 2800 False 1402.666667 2907 95.246333 116 2602 3 chr7A.!!$F2 2486
2 TraesCS7D01G319700 chr7B 423764988 423767990 3002 False 845.600000 1452 95.652600 123 2602 5 chr7B.!!$F2 2479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.178981 AATAAGAGGGCCGCATGCAT 60.179 50.0 19.57 0.0 43.89 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 2825 1.000938 CTGCTGTTTTCACCTTCTGCC 60.001 52.381 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.207474 TCCGTTTACGAGCTGTAAGAC 57.793 47.619 3.46 2.05 43.63 3.01
21 22 2.095059 TCCGTTTACGAGCTGTAAGACC 60.095 50.000 3.46 0.00 43.63 3.85
22 23 2.094854 CCGTTTACGAGCTGTAAGACCT 60.095 50.000 3.46 0.00 43.63 3.85
23 24 3.572584 CGTTTACGAGCTGTAAGACCTT 58.427 45.455 0.00 0.00 43.63 3.50
24 25 3.985925 CGTTTACGAGCTGTAAGACCTTT 59.014 43.478 0.00 0.00 43.63 3.11
25 26 5.156355 CGTTTACGAGCTGTAAGACCTTTA 58.844 41.667 0.00 0.00 43.63 1.85
26 27 5.060200 CGTTTACGAGCTGTAAGACCTTTAC 59.940 44.000 0.00 0.00 43.63 2.01
27 28 3.213249 ACGAGCTGTAAGACCTTTACG 57.787 47.619 0.00 0.00 34.07 3.18
28 29 2.555757 ACGAGCTGTAAGACCTTTACGT 59.444 45.455 0.00 0.00 34.07 3.57
29 30 3.005155 ACGAGCTGTAAGACCTTTACGTT 59.995 43.478 0.00 0.00 34.07 3.99
30 31 4.216257 ACGAGCTGTAAGACCTTTACGTTA 59.784 41.667 0.00 0.00 34.07 3.18
31 32 5.156355 CGAGCTGTAAGACCTTTACGTTAA 58.844 41.667 0.00 0.00 34.07 2.01
32 33 5.803967 CGAGCTGTAAGACCTTTACGTTAAT 59.196 40.000 0.00 0.00 34.07 1.40
33 34 6.968904 CGAGCTGTAAGACCTTTACGTTAATA 59.031 38.462 0.00 0.00 34.07 0.98
34 35 7.044445 CGAGCTGTAAGACCTTTACGTTAATAC 60.044 40.741 0.00 0.00 34.07 1.89
35 36 7.834803 AGCTGTAAGACCTTTACGTTAATACT 58.165 34.615 0.00 0.00 34.07 2.12
36 37 8.309656 AGCTGTAAGACCTTTACGTTAATACTT 58.690 33.333 0.00 0.00 34.07 2.24
37 38 8.929746 GCTGTAAGACCTTTACGTTAATACTTT 58.070 33.333 0.00 0.00 34.07 2.66
41 42 8.543862 AAGACCTTTACGTTAATACTTTCTGG 57.456 34.615 0.00 0.00 0.00 3.86
42 43 7.899973 AGACCTTTACGTTAATACTTTCTGGA 58.100 34.615 0.00 0.00 0.00 3.86
43 44 8.537858 AGACCTTTACGTTAATACTTTCTGGAT 58.462 33.333 0.00 0.00 0.00 3.41
44 45 9.159364 GACCTTTACGTTAATACTTTCTGGATT 57.841 33.333 0.00 0.00 0.00 3.01
45 46 9.511272 ACCTTTACGTTAATACTTTCTGGATTT 57.489 29.630 0.00 0.00 0.00 2.17
58 59 8.067751 ACTTTCTGGATTTTTAATAAGAGGGC 57.932 34.615 0.00 0.00 0.00 5.19
59 60 7.124298 ACTTTCTGGATTTTTAATAAGAGGGCC 59.876 37.037 0.00 0.00 0.00 5.80
60 61 5.130350 TCTGGATTTTTAATAAGAGGGCCG 58.870 41.667 0.00 0.00 0.00 6.13
61 62 3.634910 TGGATTTTTAATAAGAGGGCCGC 59.365 43.478 0.00 0.00 0.00 6.53
62 63 3.634910 GGATTTTTAATAAGAGGGCCGCA 59.365 43.478 10.70 0.00 0.00 5.69
63 64 4.280929 GGATTTTTAATAAGAGGGCCGCAT 59.719 41.667 10.70 0.00 0.00 4.73
64 65 4.647424 TTTTTAATAAGAGGGCCGCATG 57.353 40.909 10.70 0.00 0.00 4.06
65 66 1.604604 TTAATAAGAGGGCCGCATGC 58.395 50.000 10.70 7.91 40.16 4.06
66 67 0.472044 TAATAAGAGGGCCGCATGCA 59.528 50.000 19.57 0.00 43.89 3.96
67 68 0.178981 AATAAGAGGGCCGCATGCAT 60.179 50.000 19.57 0.00 43.89 3.96
68 69 0.607489 ATAAGAGGGCCGCATGCATC 60.607 55.000 19.57 8.10 43.89 3.91
69 70 1.981951 TAAGAGGGCCGCATGCATCA 61.982 55.000 19.57 0.00 43.89 3.07
70 71 2.596631 GAGGGCCGCATGCATCAT 60.597 61.111 19.57 3.49 43.89 2.45
71 72 2.596631 AGGGCCGCATGCATCATC 60.597 61.111 19.57 2.74 43.89 2.92
72 73 2.908428 GGGCCGCATGCATCATCA 60.908 61.111 19.57 0.00 43.89 3.07
73 74 2.273179 GGGCCGCATGCATCATCAT 61.273 57.895 19.57 0.00 43.89 2.45
74 75 1.080772 GGCCGCATGCATCATCATG 60.081 57.895 19.57 0.00 44.93 3.07
75 76 1.520600 GGCCGCATGCATCATCATGA 61.521 55.000 19.57 0.00 44.94 3.07
76 77 0.526211 GCCGCATGCATCATCATGAT 59.474 50.000 19.57 1.18 44.94 2.45
84 85 2.596263 CATCATCATGATGCAGACGC 57.404 50.000 27.68 0.00 46.37 5.19
85 86 1.197036 CATCATCATGATGCAGACGCC 59.803 52.381 27.68 0.00 46.37 5.68
86 87 0.877213 TCATCATGATGCAGACGCCG 60.877 55.000 27.68 4.34 38.65 6.46
87 88 1.596203 ATCATGATGCAGACGCCGG 60.596 57.895 7.59 0.00 37.32 6.13
88 89 3.274586 CATGATGCAGACGCCGGG 61.275 66.667 2.18 0.00 37.32 5.73
89 90 4.552365 ATGATGCAGACGCCGGGG 62.552 66.667 18.33 18.33 37.32 5.73
91 92 4.241555 GATGCAGACGCCGGGGAT 62.242 66.667 27.23 10.46 37.32 3.85
92 93 2.842462 ATGCAGACGCCGGGGATA 60.842 61.111 27.23 6.46 37.32 2.59
93 94 2.172483 GATGCAGACGCCGGGGATAT 62.172 60.000 27.23 10.98 37.32 1.63
94 95 0.902984 ATGCAGACGCCGGGGATATA 60.903 55.000 27.23 7.57 37.32 0.86
95 96 1.080025 GCAGACGCCGGGGATATAC 60.080 63.158 27.23 10.38 0.00 1.47
96 97 1.590147 CAGACGCCGGGGATATACC 59.410 63.158 27.23 0.00 38.08 2.73
97 98 0.898789 CAGACGCCGGGGATATACCT 60.899 60.000 27.23 8.72 38.98 3.08
98 99 0.611340 AGACGCCGGGGATATACCTC 60.611 60.000 27.23 10.25 38.98 3.85
99 100 1.602327 GACGCCGGGGATATACCTCC 61.602 65.000 27.23 0.00 35.24 4.30
100 101 1.608336 CGCCGGGGATATACCTCCA 60.608 63.158 14.46 0.00 37.01 3.86
101 102 0.976073 CGCCGGGGATATACCTCCAT 60.976 60.000 14.46 0.00 37.01 3.41
102 103 1.286248 GCCGGGGATATACCTCCATT 58.714 55.000 2.18 0.00 37.01 3.16
103 104 1.633945 GCCGGGGATATACCTCCATTT 59.366 52.381 2.18 0.00 37.01 2.32
104 105 2.355818 GCCGGGGATATACCTCCATTTC 60.356 54.545 2.18 0.00 37.01 2.17
105 106 2.238898 CCGGGGATATACCTCCATTTCC 59.761 54.545 3.33 0.00 37.01 3.13
106 107 2.910319 CGGGGATATACCTCCATTTCCA 59.090 50.000 3.33 0.00 37.01 3.53
107 108 3.329520 CGGGGATATACCTCCATTTCCAA 59.670 47.826 3.33 0.00 37.01 3.53
108 109 4.202524 CGGGGATATACCTCCATTTCCAAA 60.203 45.833 3.33 0.00 37.01 3.28
109 110 5.691704 CGGGGATATACCTCCATTTCCAAAA 60.692 44.000 3.33 0.00 37.01 2.44
110 111 6.140377 GGGGATATACCTCCATTTCCAAAAA 58.860 40.000 3.33 0.00 37.01 1.94
223 228 7.800300 AGGTAGGATTTCATTAGGATCTACC 57.200 40.000 0.00 0.00 39.35 3.18
430 437 5.106594 CGCACATATATAACCACATGCATGT 60.107 40.000 26.61 26.61 42.84 3.21
450 457 0.182299 TCATGCTCACCACCACAACA 59.818 50.000 0.00 0.00 0.00 3.33
565 572 4.658786 AACCCTCCAGGCCTCGGT 62.659 66.667 17.55 11.63 40.58 4.69
646 653 2.917227 CCGCCACCAAGCCCTTTT 60.917 61.111 0.00 0.00 0.00 2.27
823 830 3.194025 AACCCAGCCTCCTCCTCCA 62.194 63.158 0.00 0.00 0.00 3.86
826 833 2.681778 CAGCCTCCTCCTCCACGT 60.682 66.667 0.00 0.00 0.00 4.49
841 848 3.680786 CGTCGTGCTCCACCTCCA 61.681 66.667 0.00 0.00 0.00 3.86
853 860 1.770110 ACCTCCACCAACTCAGCCA 60.770 57.895 0.00 0.00 0.00 4.75
1012 1696 2.043604 CTCCGCCACATATCAGCCCA 62.044 60.000 0.00 0.00 0.00 5.36
1404 2088 1.078497 TCACCGGACACATCCATGC 60.078 57.895 9.46 0.00 46.67 4.06
1618 2308 4.557296 GCAATGATCAAATCCATACCCACG 60.557 45.833 0.00 0.00 0.00 4.94
1687 2400 3.438781 GTGTGATTGAAATAAGGGCGTCA 59.561 43.478 0.00 0.00 0.00 4.35
1731 2444 7.371126 TCGATATGCAAACTATTGTTGTCAA 57.629 32.000 0.00 0.00 38.85 3.18
2003 2825 2.761208 AGAGTGGATTTCTGGGACTACG 59.239 50.000 0.00 0.00 0.00 3.51
2043 2865 4.672801 GCAGCAGGCTACATTTCTTTACAC 60.673 45.833 0.00 0.00 40.25 2.90
2380 3202 3.243839 GGAAAGTGCATGCAAGAAGGAAA 60.244 43.478 24.58 0.00 0.00 3.13
2426 3250 4.564041 TGCAGATTCAGACTGAAACTCTC 58.436 43.478 21.41 16.72 37.39 3.20
2427 3251 4.282957 TGCAGATTCAGACTGAAACTCTCT 59.717 41.667 21.41 16.34 37.39 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.095059 GGTCTTACAGCTCGTAAACGGA 60.095 50.000 2.24 2.98 39.59 4.69
1 2 2.094854 AGGTCTTACAGCTCGTAAACGG 60.095 50.000 2.24 0.00 39.59 4.44
2 3 3.213249 AGGTCTTACAGCTCGTAAACG 57.787 47.619 9.16 0.00 39.59 3.60
3 4 5.060200 CGTAAAGGTCTTACAGCTCGTAAAC 59.940 44.000 9.16 9.54 39.59 2.01
4 5 5.156355 CGTAAAGGTCTTACAGCTCGTAAA 58.844 41.667 9.16 1.23 39.59 2.01
5 6 4.216257 ACGTAAAGGTCTTACAGCTCGTAA 59.784 41.667 8.02 8.02 37.76 3.18
6 7 3.753272 ACGTAAAGGTCTTACAGCTCGTA 59.247 43.478 0.00 0.00 31.03 3.43
7 8 2.555757 ACGTAAAGGTCTTACAGCTCGT 59.444 45.455 0.00 0.00 30.18 4.18
8 9 3.213249 ACGTAAAGGTCTTACAGCTCG 57.787 47.619 0.00 0.00 30.18 5.03
9 10 7.972832 AGTATTAACGTAAAGGTCTTACAGCTC 59.027 37.037 0.00 0.00 30.18 4.09
10 11 7.834803 AGTATTAACGTAAAGGTCTTACAGCT 58.165 34.615 0.00 0.00 0.00 4.24
11 12 8.471361 AAGTATTAACGTAAAGGTCTTACAGC 57.529 34.615 0.00 0.00 0.00 4.40
15 16 9.643693 CCAGAAAGTATTAACGTAAAGGTCTTA 57.356 33.333 0.00 0.00 0.00 2.10
16 17 8.370182 TCCAGAAAGTATTAACGTAAAGGTCTT 58.630 33.333 0.00 0.00 0.00 3.01
17 18 7.899973 TCCAGAAAGTATTAACGTAAAGGTCT 58.100 34.615 0.00 0.00 0.00 3.85
18 19 8.713737 ATCCAGAAAGTATTAACGTAAAGGTC 57.286 34.615 0.00 0.00 0.00 3.85
19 20 9.511272 AAATCCAGAAAGTATTAACGTAAAGGT 57.489 29.630 0.00 0.00 0.00 3.50
32 33 9.185680 GCCCTCTTATTAAAAATCCAGAAAGTA 57.814 33.333 0.00 0.00 0.00 2.24
33 34 7.124298 GGCCCTCTTATTAAAAATCCAGAAAGT 59.876 37.037 0.00 0.00 0.00 2.66
34 35 7.492524 GGCCCTCTTATTAAAAATCCAGAAAG 58.507 38.462 0.00 0.00 0.00 2.62
35 36 6.096282 CGGCCCTCTTATTAAAAATCCAGAAA 59.904 38.462 0.00 0.00 0.00 2.52
36 37 5.592688 CGGCCCTCTTATTAAAAATCCAGAA 59.407 40.000 0.00 0.00 0.00 3.02
37 38 5.130350 CGGCCCTCTTATTAAAAATCCAGA 58.870 41.667 0.00 0.00 0.00 3.86
38 39 4.261614 GCGGCCCTCTTATTAAAAATCCAG 60.262 45.833 0.00 0.00 0.00 3.86
39 40 3.634910 GCGGCCCTCTTATTAAAAATCCA 59.365 43.478 0.00 0.00 0.00 3.41
40 41 3.634910 TGCGGCCCTCTTATTAAAAATCC 59.365 43.478 0.00 0.00 0.00 3.01
41 42 4.911514 TGCGGCCCTCTTATTAAAAATC 57.088 40.909 0.00 0.00 0.00 2.17
42 43 4.501400 GCATGCGGCCCTCTTATTAAAAAT 60.501 41.667 0.00 0.00 36.11 1.82
43 44 3.181480 GCATGCGGCCCTCTTATTAAAAA 60.181 43.478 0.00 0.00 36.11 1.94
44 45 2.360801 GCATGCGGCCCTCTTATTAAAA 59.639 45.455 0.00 0.00 36.11 1.52
45 46 1.953686 GCATGCGGCCCTCTTATTAAA 59.046 47.619 0.00 0.00 36.11 1.52
46 47 1.133945 TGCATGCGGCCCTCTTATTAA 60.134 47.619 14.09 0.00 43.89 1.40
47 48 0.472044 TGCATGCGGCCCTCTTATTA 59.528 50.000 14.09 0.00 43.89 0.98
48 49 0.178981 ATGCATGCGGCCCTCTTATT 60.179 50.000 14.09 0.00 43.89 1.40
49 50 0.607489 GATGCATGCGGCCCTCTTAT 60.607 55.000 14.09 0.00 43.89 1.73
50 51 1.227943 GATGCATGCGGCCCTCTTA 60.228 57.895 14.09 0.00 43.89 2.10
51 52 2.517875 GATGCATGCGGCCCTCTT 60.518 61.111 14.09 0.00 43.89 2.85
52 53 3.129362 ATGATGCATGCGGCCCTCT 62.129 57.895 14.09 0.00 43.89 3.69
53 54 2.596631 ATGATGCATGCGGCCCTC 60.597 61.111 14.09 5.25 43.89 4.30
54 55 2.596631 GATGATGCATGCGGCCCT 60.597 61.111 14.09 0.00 43.89 5.19
55 56 2.273179 ATGATGATGCATGCGGCCC 61.273 57.895 14.09 2.37 43.89 5.80
56 57 1.080772 CATGATGATGCATGCGGCC 60.081 57.895 14.09 5.01 43.89 6.13
57 58 0.526211 ATCATGATGATGCATGCGGC 59.474 50.000 14.09 7.96 44.08 6.53
58 59 2.262572 CATCATGATGATGCATGCGG 57.737 50.000 28.37 0.00 46.37 5.69
66 67 1.520494 GGCGTCTGCATCATGATGAT 58.480 50.000 34.65 1.25 45.35 2.45
67 68 0.877213 CGGCGTCTGCATCATGATGA 60.877 55.000 34.65 19.93 45.35 2.92
68 69 1.568025 CGGCGTCTGCATCATGATG 59.432 57.895 28.04 28.04 45.35 3.07
69 70 1.596203 CCGGCGTCTGCATCATGAT 60.596 57.895 6.01 1.18 45.35 2.45
70 71 2.202919 CCGGCGTCTGCATCATGA 60.203 61.111 6.01 0.00 45.35 3.07
71 72 3.274586 CCCGGCGTCTGCATCATG 61.275 66.667 6.01 0.00 45.35 3.07
72 73 4.552365 CCCCGGCGTCTGCATCAT 62.552 66.667 6.01 0.00 45.35 2.45
74 75 2.172483 ATATCCCCGGCGTCTGCATC 62.172 60.000 6.01 0.00 45.35 3.91
75 76 0.902984 TATATCCCCGGCGTCTGCAT 60.903 55.000 6.01 0.00 45.35 3.96
76 77 1.532078 TATATCCCCGGCGTCTGCA 60.532 57.895 6.01 0.00 45.35 4.41
77 78 1.080025 GTATATCCCCGGCGTCTGC 60.080 63.158 6.01 0.00 41.71 4.26
78 79 0.898789 AGGTATATCCCCGGCGTCTG 60.899 60.000 6.01 0.00 36.75 3.51
79 80 0.611340 GAGGTATATCCCCGGCGTCT 60.611 60.000 6.01 0.00 36.75 4.18
80 81 1.602327 GGAGGTATATCCCCGGCGTC 61.602 65.000 6.01 0.00 36.75 5.19
81 82 1.608627 GGAGGTATATCCCCGGCGT 60.609 63.158 6.01 0.00 36.75 5.68
82 83 0.976073 ATGGAGGTATATCCCCGGCG 60.976 60.000 0.00 0.00 38.72 6.46
83 84 1.286248 AATGGAGGTATATCCCCGGC 58.714 55.000 0.00 0.00 38.72 6.13
84 85 2.238898 GGAAATGGAGGTATATCCCCGG 59.761 54.545 0.00 0.00 38.72 5.73
85 86 2.910319 TGGAAATGGAGGTATATCCCCG 59.090 50.000 0.00 0.00 38.72 5.73
86 87 5.333566 TTTGGAAATGGAGGTATATCCCC 57.666 43.478 0.00 0.00 38.72 4.81
113 114 9.961264 AGCATATAGATCATCATCATCTTGTTT 57.039 29.630 0.00 0.00 32.61 2.83
223 228 1.619654 TGCCACTTTGGTCCTCATTG 58.380 50.000 0.00 0.00 40.46 2.82
430 437 1.317613 GTTGTGGTGGTGAGCATGAA 58.682 50.000 0.00 0.00 30.75 2.57
450 457 0.901124 GAGAGGAGATGGTGCAGTGT 59.099 55.000 0.00 0.00 0.00 3.55
565 572 1.081481 GGAAGAAGGGGAAGGGGAAA 58.919 55.000 0.00 0.00 0.00 3.13
803 810 1.613630 GAGGAGGAGGCTGGGTTGA 60.614 63.158 0.00 0.00 0.00 3.18
823 830 3.681835 GGAGGTGGAGCACGACGT 61.682 66.667 0.00 0.00 34.83 4.34
826 833 3.311110 GGTGGAGGTGGAGCACGA 61.311 66.667 0.00 0.00 34.83 4.35
841 848 2.056906 GAGGTGGTGGCTGAGTTGGT 62.057 60.000 0.00 0.00 0.00 3.67
1012 1696 1.489560 GGCTAGGTGGAGGTGTTGGT 61.490 60.000 0.00 0.00 0.00 3.67
1404 2088 3.004629 CCCTGACTCGATCTTCTCATCAG 59.995 52.174 0.00 0.00 33.45 2.90
1687 2400 5.500234 TCGATTCAATCAAATTGGGTCTCT 58.500 37.500 0.00 0.00 40.61 3.10
1731 2444 9.618890 AGACATAAATTGCTCATATGTAACTGT 57.381 29.630 1.90 1.16 39.64 3.55
2003 2825 1.000938 CTGCTGTTTTCACCTTCTGCC 60.001 52.381 0.00 0.00 0.00 4.85
2043 2865 8.617290 ACTGGAAACTACAAATTAGGTTACTG 57.383 34.615 0.00 0.00 32.38 2.74
2380 3202 5.448654 TCCTGCATACATTGGCTATCTTTT 58.551 37.500 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.