Multiple sequence alignment - TraesCS7D01G319500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G319500 chr7D 100.000 4036 0 0 1 4036 408717300 408721335 0.000000e+00 7454
1 TraesCS7D01G319500 chr7D 93.333 135 5 1 3598 3728 548483692 548483826 3.180000e-46 196
2 TraesCS7D01G319500 chr7B 95.592 3267 117 12 350 3601 423138638 423141892 0.000000e+00 5210
3 TraesCS7D01G319500 chr7B 97.059 306 5 3 1 303 423138329 423138633 2.780000e-141 512
4 TraesCS7D01G319500 chr7B 90.476 147 8 3 3580 3720 109932972 109932826 5.330000e-44 189
5 TraesCS7D01G319500 chr7B 98.333 60 1 0 3719 3778 423141892 423141951 5.520000e-19 106
6 TraesCS7D01G319500 chr7A 94.682 3253 139 19 350 3600 468831389 468834609 0.000000e+00 5018
7 TraesCS7D01G319500 chr7A 97.598 333 5 2 1 330 468831067 468831399 5.850000e-158 568
8 TraesCS7D01G319500 chr7A 98.077 104 2 0 3718 3821 468834606 468834709 8.910000e-42 182
9 TraesCS7D01G319500 chr7A 85.714 119 16 1 3214 3332 222578230 222578113 1.520000e-24 124
10 TraesCS7D01G319500 chr4B 81.818 726 103 20 1590 2296 671813893 671814608 2.090000e-162 582
11 TraesCS7D01G319500 chr4B 80.247 810 125 22 1954 2736 671732614 671731813 9.730000e-161 577
12 TraesCS7D01G319500 chr4B 80.776 541 69 20 717 1248 671734187 671733673 1.360000e-104 390
13 TraesCS7D01G319500 chr4B 87.500 168 15 5 1083 1250 671813613 671813774 5.330000e-44 189
14 TraesCS7D01G319500 chr4B 95.522 67 3 0 1589 1655 671733556 671733490 1.530000e-19 108
15 TraesCS7D01G319500 chr5A 79.433 812 128 25 1954 2736 659202405 659203206 4.590000e-149 538
16 TraesCS7D01G319500 chr5A 83.768 499 63 8 1698 2178 659186291 659186789 1.320000e-124 457
17 TraesCS7D01G319500 chr5A 82.037 540 68 20 717 1247 659184788 659185307 2.230000e-117 433
18 TraesCS7D01G319500 chr5A 83.164 493 57 14 1695 2177 659185498 659185974 1.040000e-115 427
19 TraesCS7D01G319500 chr5A 86.010 193 27 0 2343 2535 659187093 659187285 1.470000e-49 207
20 TraesCS7D01G319500 chr5A 92.079 101 5 2 2440 2539 709723645 709723547 5.440000e-29 139
21 TraesCS7D01G319500 chr5A 87.619 105 10 2 1147 1248 659201296 659201400 7.090000e-23 119
22 TraesCS7D01G319500 chr5A 95.522 67 3 0 1589 1655 659186218 659186284 1.530000e-19 108
23 TraesCS7D01G319500 chrUn 79.894 756 117 22 1954 2682 30340873 30340126 4.620000e-144 521
24 TraesCS7D01G319500 chrUn 83.897 503 64 8 1698 2187 30346827 30346329 7.900000e-127 464
25 TraesCS7D01G319500 chrUn 82.234 546 66 27 717 1248 30347546 30347018 3.700000e-120 442
26 TraesCS7D01G319500 chrUn 80.978 368 48 10 901 1248 30342243 30341878 5.140000e-69 272
27 TraesCS7D01G319500 chrUn 87.565 193 24 0 2343 2535 30344848 30344656 1.460000e-54 224
28 TraesCS7D01G319500 chrUn 94.030 134 4 1 3598 3727 322720536 322720403 2.460000e-47 200
29 TraesCS7D01G319500 chrUn 85.366 123 18 0 3207 3329 472409320 472409442 1.180000e-25 128
30 TraesCS7D01G319500 chrUn 95.522 67 3 0 1589 1655 30346900 30346834 1.530000e-19 108
31 TraesCS7D01G319500 chr4A 96.226 212 6 2 3823 4034 690275636 690275427 2.990000e-91 346
32 TraesCS7D01G319500 chr4A 86.555 119 15 1 3214 3332 736230834 736230717 3.270000e-26 130
33 TraesCS7D01G319500 chr3B 93.269 208 14 0 3827 4034 727159577 727159784 1.410000e-79 307
34 TraesCS7D01G319500 chr3B 93.431 137 5 1 3596 3728 581966355 581966219 2.460000e-47 200
35 TraesCS7D01G319500 chr3B 86.555 119 15 1 3214 3332 814646926 814646809 3.270000e-26 130
36 TraesCS7D01G319500 chr2A 91.080 213 18 1 3824 4036 43220336 43220547 1.840000e-73 287
37 TraesCS7D01G319500 chr3A 86.730 211 16 1 3824 4034 1644315 1644513 1.460000e-54 224
38 TraesCS7D01G319500 chr2B 94.697 132 3 1 3598 3725 597587 597456 6.840000e-48 202
39 TraesCS7D01G319500 chr2D 92.806 139 4 3 3591 3725 384557184 384557320 3.180000e-46 196
40 TraesCS7D01G319500 chr2D 89.172 157 9 4 3579 3727 148059534 148059690 5.330000e-44 189
41 TraesCS7D01G319500 chr1D 93.333 135 5 1 3598 3728 324991040 324990906 3.180000e-46 196
42 TraesCS7D01G319500 chr5B 91.429 140 8 1 3598 3733 681081203 681081064 5.330000e-44 189
43 TraesCS7D01G319500 chr5D 80.702 171 23 6 1637 1798 503148865 503149034 1.520000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G319500 chr7D 408717300 408721335 4035 False 7454.000000 7454 100.000000 1 4036 1 chr7D.!!$F1 4035
1 TraesCS7D01G319500 chr7B 423138329 423141951 3622 False 1942.666667 5210 96.994667 1 3778 3 chr7B.!!$F1 3777
2 TraesCS7D01G319500 chr7A 468831067 468834709 3642 False 1922.666667 5018 96.785667 1 3821 3 chr7A.!!$F1 3820
3 TraesCS7D01G319500 chr4B 671813613 671814608 995 False 385.500000 582 84.659000 1083 2296 2 chr4B.!!$F1 1213
4 TraesCS7D01G319500 chr4B 671731813 671734187 2374 True 358.333333 577 85.515000 717 2736 3 chr4B.!!$R1 2019
5 TraesCS7D01G319500 chr5A 659201296 659203206 1910 False 328.500000 538 83.526000 1147 2736 2 chr5A.!!$F2 1589
6 TraesCS7D01G319500 chr5A 659184788 659187285 2497 False 326.400000 457 86.100200 717 2535 5 chr5A.!!$F1 1818
7 TraesCS7D01G319500 chrUn 30340126 30347546 7420 True 338.500000 521 85.015000 717 2682 6 chrUn.!!$R2 1965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 537 0.107993 TGATTTCTCAGGGAGCAGCG 60.108 55.000 0.00 0.0 0.00 5.18 F
840 849 0.537188 ACGAAGCCCACACATCCTAG 59.463 55.000 0.00 0.0 0.00 3.02 F
1038 1053 0.622665 AGCCAGATGCCAAGCTAAGT 59.377 50.000 0.00 0.0 42.71 2.24 F
2032 3962 2.796031 GTGTCATGAAACACGTTCGGTA 59.204 45.455 11.36 0.0 40.09 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 3789 1.064825 TGGTCTTCTTTGAGGTCCCC 58.935 55.0 0.00 0.0 0.00 4.81 R
2809 10468 0.771755 AAGGGAGTCTGGAACCAACC 59.228 55.0 0.00 0.0 0.00 3.77 R
2960 10619 2.093973 AGAAATACTGCGAGTCACAGGG 60.094 50.0 12.62 0.0 39.55 4.45 R
3703 11376 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 184 7.848128 ACTAGATGATGACATGCATGATGATA 58.152 34.615 32.75 15.51 37.34 2.15
184 185 6.986904 AGATGATGACATGCATGATGATAC 57.013 37.500 32.75 17.16 37.34 2.24
332 336 6.151817 GCAGGAGAAATGAACACCTCTTATTT 59.848 38.462 0.00 0.00 0.00 1.40
333 337 7.336931 GCAGGAGAAATGAACACCTCTTATTTA 59.663 37.037 0.00 0.00 0.00 1.40
334 338 9.401058 CAGGAGAAATGAACACCTCTTATTTAT 57.599 33.333 0.00 0.00 0.00 1.40
335 339 9.981460 AGGAGAAATGAACACCTCTTATTTATT 57.019 29.630 0.00 0.00 0.00 1.40
357 361 7.898014 ATTCTTTTTCCAAACTAACACCTCT 57.102 32.000 0.00 0.00 0.00 3.69
358 362 7.712204 TTCTTTTTCCAAACTAACACCTCTT 57.288 32.000 0.00 0.00 0.00 2.85
359 363 8.810990 TTCTTTTTCCAAACTAACACCTCTTA 57.189 30.769 0.00 0.00 0.00 2.10
360 364 8.990163 TCTTTTTCCAAACTAACACCTCTTAT 57.010 30.769 0.00 0.00 0.00 1.73
361 365 9.416284 TCTTTTTCCAAACTAACACCTCTTATT 57.584 29.630 0.00 0.00 0.00 1.40
362 366 9.463443 CTTTTTCCAAACTAACACCTCTTATTG 57.537 33.333 0.00 0.00 0.00 1.90
404 408 4.467795 AGAAGATACAGCTGCAAGAAGGTA 59.532 41.667 15.27 0.00 34.07 3.08
442 446 0.739462 TAAGAAGATGCACGCACCCG 60.739 55.000 0.00 0.00 41.14 5.28
505 509 2.637872 TCACCTCGAGATGGGTTCTTTT 59.362 45.455 15.71 0.00 33.74 2.27
533 537 0.107993 TGATTTCTCAGGGAGCAGCG 60.108 55.000 0.00 0.00 0.00 5.18
840 849 0.537188 ACGAAGCCCACACATCCTAG 59.463 55.000 0.00 0.00 0.00 3.02
990 1001 4.088634 AGAAATGGCAGCAAATGAGGTTA 58.911 39.130 0.00 0.00 0.00 2.85
1038 1053 0.622665 AGCCAGATGCCAAGCTAAGT 59.377 50.000 0.00 0.00 42.71 2.24
1660 3560 4.627035 GCAAAATGTTCAGGTAATTGCTCC 59.373 41.667 0.00 0.00 38.79 4.70
1686 3586 8.746052 TTGTACGAAATCATCTTATTCCCATT 57.254 30.769 0.00 0.00 0.00 3.16
1692 3592 7.427989 AAATCATCTTATTCCCATTGTTGCT 57.572 32.000 0.00 0.00 0.00 3.91
1839 3762 3.001330 CCTCGAAATATGCGACTTTGACC 59.999 47.826 0.00 0.00 33.71 4.02
1866 3789 3.636679 TGTGATAGAGGAAGTGGAGGAG 58.363 50.000 0.00 0.00 0.00 3.69
1924 3847 5.280011 GCTATTATCTGGCTGGCTAGGTAAA 60.280 44.000 13.90 4.16 34.59 2.01
1938 3861 7.853299 TGGCTAGGTAAATTAACTGTACATGA 58.147 34.615 0.00 0.00 0.00 3.07
2016 3943 5.875910 TCAAAACCTTCGTTCTTAAGTGTCA 59.124 36.000 1.63 0.00 0.00 3.58
2017 3945 6.540914 TCAAAACCTTCGTTCTTAAGTGTCAT 59.459 34.615 1.63 0.00 0.00 3.06
2032 3962 2.796031 GTGTCATGAAACACGTTCGGTA 59.204 45.455 11.36 0.00 40.09 4.02
2042 3972 3.466836 ACACGTTCGGTATAGGTCGATA 58.533 45.455 0.00 0.00 35.25 2.92
2087 4017 6.388100 TGGAGAGATTAATGAAGAACCCAGAT 59.612 38.462 0.00 0.00 0.00 2.90
2100 4030 3.243359 ACCCAGATTCAAGCCTGAAAA 57.757 42.857 1.04 0.00 44.64 2.29
2123 4053 4.265073 AGATGGTGGAAGAAGCATACAAC 58.735 43.478 0.00 0.00 38.35 3.32
2213 4165 5.944599 ACTGCTTTCATGATCATGACTTCTT 59.055 36.000 33.02 15.98 46.49 2.52
2221 4173 8.803397 TCATGATCATGACTTCTTCAGAATTT 57.197 30.769 30.27 0.00 42.42 1.82
2224 5433 8.625786 TGATCATGACTTCTTCAGAATTTGAA 57.374 30.769 0.00 3.95 43.40 2.69
2616 10271 8.206189 TGCATGAGAGATATGTGTTTTCTGATA 58.794 33.333 0.00 0.00 0.00 2.15
2986 10645 6.401153 CCTGTGACTCGCAGTATTTCTTTAAC 60.401 42.308 16.65 0.00 39.99 2.01
3280 10939 3.167485 ACAACACCATTCATGCCTTCAT 58.833 40.909 0.00 0.00 0.00 2.57
3455 11114 4.318949 TCGGCTCAGCTGCTTGCA 62.319 61.111 20.89 0.00 45.94 4.08
3478 11149 6.204359 CAATTTCACAGCTATATGACCAAGC 58.796 40.000 0.00 0.00 36.48 4.01
3603 11276 8.671384 TTAATACAAACATATGCTGTACTCCC 57.329 34.615 16.49 0.00 36.98 4.30
3604 11277 4.844349 ACAAACATATGCTGTACTCCCT 57.156 40.909 1.58 0.00 36.98 4.20
3605 11278 4.770795 ACAAACATATGCTGTACTCCCTC 58.229 43.478 1.58 0.00 36.98 4.30
3606 11279 4.130118 CAAACATATGCTGTACTCCCTCC 58.870 47.826 1.58 0.00 36.98 4.30
3607 11280 1.964223 ACATATGCTGTACTCCCTCCG 59.036 52.381 1.58 0.00 35.91 4.63
3608 11281 1.964223 CATATGCTGTACTCCCTCCGT 59.036 52.381 0.00 0.00 0.00 4.69
3609 11282 1.688772 TATGCTGTACTCCCTCCGTC 58.311 55.000 0.00 0.00 0.00 4.79
3610 11283 1.043673 ATGCTGTACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
3611 11284 2.772691 GCTGTACTCCCTCCGTCCG 61.773 68.421 0.00 0.00 0.00 4.79
3612 11285 2.044650 TGTACTCCCTCCGTCCGG 60.045 66.667 0.00 0.00 0.00 5.14
3613 11286 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
3614 11287 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3615 11288 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3616 11289 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3617 11290 1.144057 CTCCCTCCGTCCGGAAATG 59.856 63.158 5.23 0.00 44.66 2.32
3618 11291 1.611261 TCCCTCCGTCCGGAAATGT 60.611 57.895 5.23 0.00 44.66 2.71
3619 11292 1.153429 CCCTCCGTCCGGAAATGTC 60.153 63.158 5.23 0.00 44.66 3.06
3620 11293 1.594833 CCTCCGTCCGGAAATGTCA 59.405 57.895 5.23 0.00 44.66 3.58
3621 11294 0.178068 CCTCCGTCCGGAAATGTCAT 59.822 55.000 5.23 0.00 44.66 3.06
3622 11295 1.571919 CTCCGTCCGGAAATGTCATC 58.428 55.000 5.23 0.00 44.66 2.92
3623 11296 0.899019 TCCGTCCGGAAATGTCATCA 59.101 50.000 5.23 0.00 42.05 3.07
3624 11297 1.276705 TCCGTCCGGAAATGTCATCAA 59.723 47.619 5.23 0.00 42.05 2.57
3625 11298 2.080693 CCGTCCGGAAATGTCATCAAA 58.919 47.619 5.23 0.00 37.50 2.69
3626 11299 2.486203 CCGTCCGGAAATGTCATCAAAA 59.514 45.455 5.23 0.00 37.50 2.44
3627 11300 3.128589 CCGTCCGGAAATGTCATCAAAAT 59.871 43.478 5.23 0.00 37.50 1.82
3628 11301 4.097714 CGTCCGGAAATGTCATCAAAATG 58.902 43.478 5.23 0.00 0.00 2.32
3629 11302 4.142708 CGTCCGGAAATGTCATCAAAATGA 60.143 41.667 5.23 0.00 39.63 2.57
3630 11303 5.618863 CGTCCGGAAATGTCATCAAAATGAA 60.619 40.000 5.23 0.00 43.42 2.57
3631 11304 6.332630 GTCCGGAAATGTCATCAAAATGAAT 58.667 36.000 5.23 0.00 43.42 2.57
3632 11305 7.479980 GTCCGGAAATGTCATCAAAATGAATA 58.520 34.615 5.23 0.00 43.42 1.75
3633 11306 7.973388 GTCCGGAAATGTCATCAAAATGAATAA 59.027 33.333 5.23 0.00 43.42 1.40
3634 11307 8.526978 TCCGGAAATGTCATCAAAATGAATAAA 58.473 29.630 0.00 0.00 43.42 1.40
3635 11308 9.149225 CCGGAAATGTCATCAAAATGAATAAAA 57.851 29.630 0.00 0.00 43.42 1.52
3639 11312 9.452287 AAATGTCATCAAAATGAATAAAAGGGG 57.548 29.630 0.00 0.00 43.42 4.79
3640 11313 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
3641 11314 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
3642 11315 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
3643 11316 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
3644 11317 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
3647 11320 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
3653 11326 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
3661 11334 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
3673 11346 8.438676 AGATGTATTTTAGTTCTGCATACACC 57.561 34.615 0.00 0.00 34.09 4.16
3674 11347 6.995511 TGTATTTTAGTTCTGCATACACCC 57.004 37.500 0.00 0.00 0.00 4.61
3675 11348 5.883673 TGTATTTTAGTTCTGCATACACCCC 59.116 40.000 0.00 0.00 0.00 4.95
3676 11349 4.650972 TTTTAGTTCTGCATACACCCCT 57.349 40.909 0.00 0.00 0.00 4.79
3677 11350 4.650972 TTTAGTTCTGCATACACCCCTT 57.349 40.909 0.00 0.00 0.00 3.95
3678 11351 4.650972 TTAGTTCTGCATACACCCCTTT 57.349 40.909 0.00 0.00 0.00 3.11
3679 11352 3.525800 AGTTCTGCATACACCCCTTTT 57.474 42.857 0.00 0.00 0.00 2.27
3680 11353 3.844640 AGTTCTGCATACACCCCTTTTT 58.155 40.909 0.00 0.00 0.00 1.94
3681 11354 3.573967 AGTTCTGCATACACCCCTTTTTG 59.426 43.478 0.00 0.00 0.00 2.44
3682 11355 3.237268 TCTGCATACACCCCTTTTTGT 57.763 42.857 0.00 0.00 0.00 2.83
3683 11356 3.153919 TCTGCATACACCCCTTTTTGTC 58.846 45.455 0.00 0.00 0.00 3.18
3684 11357 2.231235 CTGCATACACCCCTTTTTGTCC 59.769 50.000 0.00 0.00 0.00 4.02
3685 11358 2.243810 GCATACACCCCTTTTTGTCCA 58.756 47.619 0.00 0.00 0.00 4.02
3686 11359 2.831526 GCATACACCCCTTTTTGTCCAT 59.168 45.455 0.00 0.00 0.00 3.41
3687 11360 3.260632 GCATACACCCCTTTTTGTCCATT 59.739 43.478 0.00 0.00 0.00 3.16
3688 11361 4.262851 GCATACACCCCTTTTTGTCCATTT 60.263 41.667 0.00 0.00 0.00 2.32
3689 11362 5.744594 GCATACACCCCTTTTTGTCCATTTT 60.745 40.000 0.00 0.00 0.00 1.82
3690 11363 4.149511 ACACCCCTTTTTGTCCATTTTG 57.850 40.909 0.00 0.00 0.00 2.44
3691 11364 3.777522 ACACCCCTTTTTGTCCATTTTGA 59.222 39.130 0.00 0.00 0.00 2.69
3692 11365 4.411869 ACACCCCTTTTTGTCCATTTTGAT 59.588 37.500 0.00 0.00 0.00 2.57
3693 11366 4.756135 CACCCCTTTTTGTCCATTTTGATG 59.244 41.667 0.00 0.00 0.00 3.07
3694 11367 4.657969 ACCCCTTTTTGTCCATTTTGATGA 59.342 37.500 0.00 0.00 0.00 2.92
3695 11368 4.996758 CCCCTTTTTGTCCATTTTGATGAC 59.003 41.667 0.00 0.00 0.00 3.06
3696 11369 5.454471 CCCCTTTTTGTCCATTTTGATGACA 60.454 40.000 0.00 0.00 0.00 3.58
3697 11370 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
3698 11371 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
3699 11372 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
3700 11373 7.280652 CCTTTTTGTCCATTTTGATGACAAGTT 59.719 33.333 0.00 0.00 37.13 2.66
3701 11374 8.558973 TTTTTGTCCATTTTGATGACAAGTTT 57.441 26.923 0.00 0.00 37.13 2.66
3702 11375 8.558973 TTTTGTCCATTTTGATGACAAGTTTT 57.441 26.923 0.00 0.00 37.13 2.43
3703 11376 8.558973 TTTGTCCATTTTGATGACAAGTTTTT 57.441 26.923 0.00 0.00 37.13 1.94
3751 11424 4.277672 GCTCTACATGATCCATTGTGCAAT 59.722 41.667 0.00 0.00 0.00 3.56
3859 11532 4.752661 TTCGTCCCTTAATTTTTGACGG 57.247 40.909 14.99 0.00 46.36 4.79
3860 11533 4.005487 TCGTCCCTTAATTTTTGACGGA 57.995 40.909 14.99 0.00 46.36 4.69
3861 11534 3.998341 TCGTCCCTTAATTTTTGACGGAG 59.002 43.478 14.99 0.00 46.36 4.63
3875 11548 1.677942 ACGGAGTCTAGATTCGGTCC 58.322 55.000 18.82 9.36 29.74 4.46
3876 11549 0.953003 CGGAGTCTAGATTCGGTCCC 59.047 60.000 12.86 0.00 0.00 4.46
3877 11550 1.477195 CGGAGTCTAGATTCGGTCCCT 60.477 57.143 12.86 0.00 0.00 4.20
3878 11551 2.232399 GGAGTCTAGATTCGGTCCCTC 58.768 57.143 8.95 2.25 0.00 4.30
3879 11552 2.423088 GGAGTCTAGATTCGGTCCCTCA 60.423 54.545 8.95 0.00 0.00 3.86
3880 11553 3.288964 GAGTCTAGATTCGGTCCCTCAA 58.711 50.000 0.00 0.00 0.00 3.02
3881 11554 3.025262 AGTCTAGATTCGGTCCCTCAAC 58.975 50.000 0.00 0.00 0.00 3.18
3882 11555 3.025262 GTCTAGATTCGGTCCCTCAACT 58.975 50.000 0.00 0.00 0.00 3.16
3883 11556 4.079901 AGTCTAGATTCGGTCCCTCAACTA 60.080 45.833 0.00 0.00 0.00 2.24
3884 11557 4.828387 GTCTAGATTCGGTCCCTCAACTAT 59.172 45.833 0.00 0.00 0.00 2.12
3885 11558 4.827835 TCTAGATTCGGTCCCTCAACTATG 59.172 45.833 0.00 0.00 0.00 2.23
3886 11559 3.643237 AGATTCGGTCCCTCAACTATGA 58.357 45.455 0.00 0.00 0.00 2.15
3887 11560 4.030913 AGATTCGGTCCCTCAACTATGAA 58.969 43.478 0.00 0.00 34.49 2.57
3888 11561 4.469945 AGATTCGGTCCCTCAACTATGAAA 59.530 41.667 0.00 0.00 34.49 2.69
3889 11562 3.604875 TCGGTCCCTCAACTATGAAAC 57.395 47.619 0.00 0.00 34.49 2.78
3890 11563 2.235402 TCGGTCCCTCAACTATGAAACC 59.765 50.000 0.00 0.00 34.49 3.27
3891 11564 2.027561 CGGTCCCTCAACTATGAAACCA 60.028 50.000 0.00 0.00 34.61 3.67
3892 11565 3.610911 GGTCCCTCAACTATGAAACCAG 58.389 50.000 0.00 0.00 34.86 4.00
3893 11566 3.263425 GGTCCCTCAACTATGAAACCAGA 59.737 47.826 0.00 0.00 34.86 3.86
3894 11567 4.254492 GTCCCTCAACTATGAAACCAGAC 58.746 47.826 0.00 0.00 34.49 3.51
3895 11568 3.907474 TCCCTCAACTATGAAACCAGACA 59.093 43.478 0.00 0.00 34.49 3.41
3896 11569 4.349636 TCCCTCAACTATGAAACCAGACAA 59.650 41.667 0.00 0.00 34.49 3.18
3897 11570 4.455877 CCCTCAACTATGAAACCAGACAAC 59.544 45.833 0.00 0.00 34.49 3.32
3898 11571 5.063204 CCTCAACTATGAAACCAGACAACA 58.937 41.667 0.00 0.00 34.49 3.33
3899 11572 5.707298 CCTCAACTATGAAACCAGACAACAT 59.293 40.000 0.00 0.00 34.49 2.71
3900 11573 6.348786 CCTCAACTATGAAACCAGACAACATG 60.349 42.308 0.00 0.00 34.49 3.21
3901 11574 5.048782 TCAACTATGAAACCAGACAACATGC 60.049 40.000 0.00 0.00 30.99 4.06
3902 11575 4.397420 ACTATGAAACCAGACAACATGCA 58.603 39.130 0.00 0.00 0.00 3.96
3903 11576 3.648339 ATGAAACCAGACAACATGCAC 57.352 42.857 0.00 0.00 0.00 4.57
3904 11577 1.680735 TGAAACCAGACAACATGCACC 59.319 47.619 0.00 0.00 0.00 5.01
3905 11578 1.956477 GAAACCAGACAACATGCACCT 59.044 47.619 0.00 0.00 0.00 4.00
3906 11579 1.609208 AACCAGACAACATGCACCTC 58.391 50.000 0.00 0.00 0.00 3.85
3907 11580 0.250901 ACCAGACAACATGCACCTCC 60.251 55.000 0.00 0.00 0.00 4.30
3908 11581 0.250858 CCAGACAACATGCACCTCCA 60.251 55.000 0.00 0.00 0.00 3.86
3909 11582 1.608055 CAGACAACATGCACCTCCAA 58.392 50.000 0.00 0.00 0.00 3.53
3910 11583 1.267806 CAGACAACATGCACCTCCAAC 59.732 52.381 0.00 0.00 0.00 3.77
3911 11584 1.143684 AGACAACATGCACCTCCAACT 59.856 47.619 0.00 0.00 0.00 3.16
3912 11585 1.537202 GACAACATGCACCTCCAACTC 59.463 52.381 0.00 0.00 0.00 3.01
3913 11586 1.143684 ACAACATGCACCTCCAACTCT 59.856 47.619 0.00 0.00 0.00 3.24
3914 11587 2.233271 CAACATGCACCTCCAACTCTT 58.767 47.619 0.00 0.00 0.00 2.85
3915 11588 3.181445 ACAACATGCACCTCCAACTCTTA 60.181 43.478 0.00 0.00 0.00 2.10
3916 11589 3.788227 ACATGCACCTCCAACTCTTAA 57.212 42.857 0.00 0.00 0.00 1.85
3917 11590 4.098914 ACATGCACCTCCAACTCTTAAA 57.901 40.909 0.00 0.00 0.00 1.52
3918 11591 4.469657 ACATGCACCTCCAACTCTTAAAA 58.530 39.130 0.00 0.00 0.00 1.52
3919 11592 4.278419 ACATGCACCTCCAACTCTTAAAAC 59.722 41.667 0.00 0.00 0.00 2.43
3920 11593 3.219281 TGCACCTCCAACTCTTAAAACC 58.781 45.455 0.00 0.00 0.00 3.27
3921 11594 2.225727 GCACCTCCAACTCTTAAAACCG 59.774 50.000 0.00 0.00 0.00 4.44
3922 11595 2.812011 CACCTCCAACTCTTAAAACCGG 59.188 50.000 0.00 0.00 0.00 5.28
3923 11596 2.707257 ACCTCCAACTCTTAAAACCGGA 59.293 45.455 9.46 0.00 0.00 5.14
3924 11597 3.072211 CCTCCAACTCTTAAAACCGGAC 58.928 50.000 9.46 0.00 0.00 4.79
3925 11598 3.495453 CCTCCAACTCTTAAAACCGGACA 60.495 47.826 9.46 0.00 0.00 4.02
3926 11599 4.131596 CTCCAACTCTTAAAACCGGACAA 58.868 43.478 9.46 0.00 0.00 3.18
3927 11600 4.131596 TCCAACTCTTAAAACCGGACAAG 58.868 43.478 9.46 5.59 0.00 3.16
3928 11601 3.881089 CCAACTCTTAAAACCGGACAAGT 59.119 43.478 9.46 0.00 0.00 3.16
3929 11602 4.337274 CCAACTCTTAAAACCGGACAAGTT 59.663 41.667 9.46 4.92 0.00 2.66
3930 11603 5.163591 CCAACTCTTAAAACCGGACAAGTTT 60.164 40.000 9.46 2.76 39.07 2.66
3931 11604 5.746307 ACTCTTAAAACCGGACAAGTTTC 57.254 39.130 9.46 0.00 36.44 2.78
3932 11605 5.187687 ACTCTTAAAACCGGACAAGTTTCA 58.812 37.500 9.46 0.00 36.44 2.69
3933 11606 5.826208 ACTCTTAAAACCGGACAAGTTTCAT 59.174 36.000 9.46 0.00 36.44 2.57
3934 11607 6.017357 ACTCTTAAAACCGGACAAGTTTCATC 60.017 38.462 9.46 0.00 36.44 2.92
3935 11608 5.239963 TCTTAAAACCGGACAAGTTTCATCC 59.760 40.000 9.46 0.00 36.44 3.51
3936 11609 2.951229 AACCGGACAAGTTTCATCCT 57.049 45.000 9.46 0.00 0.00 3.24
3937 11610 2.474410 ACCGGACAAGTTTCATCCTC 57.526 50.000 9.46 0.00 0.00 3.71
3938 11611 1.003233 ACCGGACAAGTTTCATCCTCC 59.997 52.381 9.46 0.00 0.00 4.30
3939 11612 1.279271 CCGGACAAGTTTCATCCTCCT 59.721 52.381 0.00 0.00 0.00 3.69
3940 11613 2.622436 CGGACAAGTTTCATCCTCCTC 58.378 52.381 0.00 0.00 0.00 3.71
3941 11614 2.678190 CGGACAAGTTTCATCCTCCTCC 60.678 54.545 0.00 0.00 0.00 4.30
3942 11615 2.356227 GGACAAGTTTCATCCTCCTCCC 60.356 54.545 0.00 0.00 0.00 4.30
3943 11616 1.279271 ACAAGTTTCATCCTCCTCCCG 59.721 52.381 0.00 0.00 0.00 5.14
3944 11617 0.912486 AAGTTTCATCCTCCTCCCGG 59.088 55.000 0.00 0.00 0.00 5.73
3945 11618 0.252742 AGTTTCATCCTCCTCCCGGT 60.253 55.000 0.00 0.00 0.00 5.28
3946 11619 0.618981 GTTTCATCCTCCTCCCGGTT 59.381 55.000 0.00 0.00 0.00 4.44
3947 11620 1.004394 GTTTCATCCTCCTCCCGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
3948 11621 1.368374 TTCATCCTCCTCCCGGTTTT 58.632 50.000 0.00 0.00 0.00 2.43
3949 11622 0.618458 TCATCCTCCTCCCGGTTTTG 59.382 55.000 0.00 0.00 0.00 2.44
3950 11623 0.394352 CATCCTCCTCCCGGTTTTGG 60.394 60.000 0.00 0.00 0.00 3.28
3951 11624 2.211468 ATCCTCCTCCCGGTTTTGGC 62.211 60.000 0.00 0.00 0.00 4.52
3952 11625 2.361230 CTCCTCCCGGTTTTGGCC 60.361 66.667 0.00 0.00 0.00 5.36
3960 11633 4.167597 GGTTTTGGCCGGTCTTGA 57.832 55.556 7.97 0.00 0.00 3.02
3961 11634 2.653557 GGTTTTGGCCGGTCTTGAT 58.346 52.632 7.97 0.00 0.00 2.57
3962 11635 0.243636 GGTTTTGGCCGGTCTTGATG 59.756 55.000 7.97 0.00 0.00 3.07
3963 11636 0.388520 GTTTTGGCCGGTCTTGATGC 60.389 55.000 7.97 0.00 0.00 3.91
3964 11637 0.539438 TTTTGGCCGGTCTTGATGCT 60.539 50.000 7.97 0.00 0.00 3.79
3965 11638 1.243342 TTTGGCCGGTCTTGATGCTG 61.243 55.000 7.97 0.00 0.00 4.41
3966 11639 2.825836 GGCCGGTCTTGATGCTGG 60.826 66.667 1.90 0.00 0.00 4.85
3968 11641 2.270205 CCGGTCTTGATGCTGGCT 59.730 61.111 0.00 0.00 0.00 4.75
3969 11642 1.817099 CCGGTCTTGATGCTGGCTC 60.817 63.158 0.00 0.00 0.00 4.70
3970 11643 1.078918 CGGTCTTGATGCTGGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
3971 11644 0.463295 CGGTCTTGATGCTGGCTCAT 60.463 55.000 0.00 0.00 0.00 2.90
3972 11645 1.307097 GGTCTTGATGCTGGCTCATC 58.693 55.000 11.58 11.58 42.33 2.92
3973 11646 1.307097 GTCTTGATGCTGGCTCATCC 58.693 55.000 14.51 0.51 41.54 3.51
3974 11647 0.182061 TCTTGATGCTGGCTCATCCC 59.818 55.000 14.51 0.00 41.54 3.85
3975 11648 1.153107 TTGATGCTGGCTCATCCCG 60.153 57.895 14.51 0.00 41.54 5.14
3976 11649 2.281345 GATGCTGGCTCATCCCGG 60.281 66.667 0.00 0.00 37.47 5.73
3977 11650 3.092511 ATGCTGGCTCATCCCGGT 61.093 61.111 0.00 0.00 33.60 5.28
3978 11651 2.615227 GATGCTGGCTCATCCCGGTT 62.615 60.000 0.00 0.00 37.47 4.44
3979 11652 2.044946 GCTGGCTCATCCCGGTTT 60.045 61.111 0.00 0.00 33.60 3.27
3980 11653 1.678970 GCTGGCTCATCCCGGTTTT 60.679 57.895 0.00 0.00 33.60 2.43
3981 11654 1.937546 GCTGGCTCATCCCGGTTTTG 61.938 60.000 0.00 0.00 33.60 2.44
3982 11655 0.322456 CTGGCTCATCCCGGTTTTGA 60.322 55.000 0.00 0.00 0.00 2.69
3983 11656 0.608035 TGGCTCATCCCGGTTTTGAC 60.608 55.000 0.00 0.00 0.00 3.18
3984 11657 1.313091 GGCTCATCCCGGTTTTGACC 61.313 60.000 0.00 1.71 0.00 4.02
3994 11667 1.463674 GGTTTTGACCGATCCATGCT 58.536 50.000 0.00 0.00 0.00 3.79
3995 11668 1.133025 GGTTTTGACCGATCCATGCTG 59.867 52.381 0.00 0.00 0.00 4.41
3996 11669 2.083774 GTTTTGACCGATCCATGCTGA 58.916 47.619 0.00 0.00 0.00 4.26
3997 11670 1.737838 TTTGACCGATCCATGCTGAC 58.262 50.000 0.00 0.00 0.00 3.51
3998 11671 0.460109 TTGACCGATCCATGCTGACG 60.460 55.000 0.00 0.00 0.00 4.35
3999 11672 1.141881 GACCGATCCATGCTGACGT 59.858 57.895 0.00 0.00 0.00 4.34
4000 11673 1.148157 GACCGATCCATGCTGACGTG 61.148 60.000 0.00 0.00 0.00 4.49
4005 11678 3.353600 CCATGCTGACGTGGCAAA 58.646 55.556 15.18 0.00 45.83 3.68
4006 11679 1.210931 CCATGCTGACGTGGCAAAG 59.789 57.895 15.18 11.20 45.83 2.77
4007 11680 1.236616 CCATGCTGACGTGGCAAAGA 61.237 55.000 15.18 0.00 45.83 2.52
4008 11681 0.592637 CATGCTGACGTGGCAAAGAA 59.407 50.000 15.18 0.00 43.14 2.52
4009 11682 1.001487 CATGCTGACGTGGCAAAGAAA 60.001 47.619 15.18 0.00 43.14 2.52
4010 11683 0.380378 TGCTGACGTGGCAAAGAAAC 59.620 50.000 9.89 0.00 36.71 2.78
4011 11684 0.317854 GCTGACGTGGCAAAGAAACC 60.318 55.000 0.00 0.00 0.00 3.27
4012 11685 0.310854 CTGACGTGGCAAAGAAACCC 59.689 55.000 0.00 0.00 0.00 4.11
4013 11686 1.104577 TGACGTGGCAAAGAAACCCC 61.105 55.000 0.00 0.00 0.00 4.95
4014 11687 1.802337 GACGTGGCAAAGAAACCCCC 61.802 60.000 0.00 0.00 0.00 5.40
4015 11688 2.914908 CGTGGCAAAGAAACCCCCG 61.915 63.158 0.00 0.00 0.00 5.73
4016 11689 1.529713 GTGGCAAAGAAACCCCCGA 60.530 57.895 0.00 0.00 0.00 5.14
4017 11690 1.110518 GTGGCAAAGAAACCCCCGAA 61.111 55.000 0.00 0.00 0.00 4.30
4018 11691 0.178947 TGGCAAAGAAACCCCCGAAT 60.179 50.000 0.00 0.00 0.00 3.34
4019 11692 0.973632 GGCAAAGAAACCCCCGAATT 59.026 50.000 0.00 0.00 0.00 2.17
4020 11693 1.337728 GGCAAAGAAACCCCCGAATTG 60.338 52.381 0.00 0.00 0.00 2.32
4021 11694 1.616374 GCAAAGAAACCCCCGAATTGA 59.384 47.619 0.00 0.00 0.00 2.57
4022 11695 2.609491 GCAAAGAAACCCCCGAATTGAC 60.609 50.000 0.00 0.00 0.00 3.18
4023 11696 2.890945 CAAAGAAACCCCCGAATTGACT 59.109 45.455 0.00 0.00 0.00 3.41
4024 11697 2.971901 AGAAACCCCCGAATTGACTT 57.028 45.000 0.00 0.00 0.00 3.01
4025 11698 2.791655 AGAAACCCCCGAATTGACTTC 58.208 47.619 0.00 0.00 0.00 3.01
4026 11699 1.816835 GAAACCCCCGAATTGACTTCC 59.183 52.381 0.00 0.00 0.00 3.46
4027 11700 0.039180 AACCCCCGAATTGACTTCCC 59.961 55.000 0.00 0.00 0.00 3.97
4028 11701 1.451387 CCCCCGAATTGACTTCCCG 60.451 63.158 0.00 0.00 0.00 5.14
4029 11702 1.451387 CCCCGAATTGACTTCCCGG 60.451 63.158 0.00 0.00 39.85 5.73
4030 11703 1.298667 CCCGAATTGACTTCCCGGT 59.701 57.895 0.00 0.00 38.61 5.28
4031 11704 0.322187 CCCGAATTGACTTCCCGGTT 60.322 55.000 0.00 0.00 38.61 4.44
4032 11705 1.084289 CCGAATTGACTTCCCGGTTC 58.916 55.000 0.00 0.00 35.83 3.62
4033 11706 1.084289 CGAATTGACTTCCCGGTTCC 58.916 55.000 0.00 0.00 0.00 3.62
4034 11707 1.338769 CGAATTGACTTCCCGGTTCCT 60.339 52.381 0.00 0.00 0.00 3.36
4035 11708 2.357075 GAATTGACTTCCCGGTTCCTC 58.643 52.381 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 184 7.880195 AGAGATTACTTGTGTTCTGCTTTATGT 59.120 33.333 0.00 0.00 0.00 2.29
184 185 8.261492 AGAGATTACTTGTGTTCTGCTTTATG 57.739 34.615 0.00 0.00 0.00 1.90
332 336 8.990163 AGAGGTGTTAGTTTGGAAAAAGAATA 57.010 30.769 0.00 0.00 0.00 1.75
333 337 7.898014 AGAGGTGTTAGTTTGGAAAAAGAAT 57.102 32.000 0.00 0.00 0.00 2.40
334 338 7.712204 AAGAGGTGTTAGTTTGGAAAAAGAA 57.288 32.000 0.00 0.00 0.00 2.52
335 339 8.990163 ATAAGAGGTGTTAGTTTGGAAAAAGA 57.010 30.769 0.00 0.00 0.00 2.52
336 340 9.463443 CAATAAGAGGTGTTAGTTTGGAAAAAG 57.537 33.333 0.00 0.00 0.00 2.27
337 341 9.191479 TCAATAAGAGGTGTTAGTTTGGAAAAA 57.809 29.630 0.00 0.00 0.00 1.94
338 342 8.754991 TCAATAAGAGGTGTTAGTTTGGAAAA 57.245 30.769 0.00 0.00 0.00 2.29
339 343 8.934023 ATCAATAAGAGGTGTTAGTTTGGAAA 57.066 30.769 0.00 0.00 0.00 3.13
340 344 8.383175 AGATCAATAAGAGGTGTTAGTTTGGAA 58.617 33.333 0.00 0.00 0.00 3.53
341 345 7.918076 AGATCAATAAGAGGTGTTAGTTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
342 346 8.567285 AAGATCAATAAGAGGTGTTAGTTTGG 57.433 34.615 0.00 0.00 0.00 3.28
343 347 9.219603 TGAAGATCAATAAGAGGTGTTAGTTTG 57.780 33.333 0.00 0.00 0.00 2.93
344 348 9.965902 ATGAAGATCAATAAGAGGTGTTAGTTT 57.034 29.630 0.00 0.00 0.00 2.66
345 349 9.965902 AATGAAGATCAATAAGAGGTGTTAGTT 57.034 29.630 0.00 0.00 0.00 2.24
346 350 9.388506 CAATGAAGATCAATAAGAGGTGTTAGT 57.611 33.333 0.00 0.00 0.00 2.24
347 351 9.388506 ACAATGAAGATCAATAAGAGGTGTTAG 57.611 33.333 0.00 0.00 0.00 2.34
348 352 9.383519 GACAATGAAGATCAATAAGAGGTGTTA 57.616 33.333 0.00 0.00 0.00 2.41
349 353 7.065085 CGACAATGAAGATCAATAAGAGGTGTT 59.935 37.037 0.00 0.00 0.00 3.32
350 354 6.536582 CGACAATGAAGATCAATAAGAGGTGT 59.463 38.462 0.00 0.00 0.00 4.16
351 355 6.536582 ACGACAATGAAGATCAATAAGAGGTG 59.463 38.462 0.00 0.00 0.00 4.00
352 356 6.644347 ACGACAATGAAGATCAATAAGAGGT 58.356 36.000 0.00 0.00 0.00 3.85
353 357 8.824159 ATACGACAATGAAGATCAATAAGAGG 57.176 34.615 0.00 0.00 0.00 3.69
354 358 9.468532 TGATACGACAATGAAGATCAATAAGAG 57.531 33.333 0.00 0.00 0.00 2.85
355 359 9.816354 TTGATACGACAATGAAGATCAATAAGA 57.184 29.630 0.00 0.00 30.45 2.10
357 361 9.816354 TCTTGATACGACAATGAAGATCAATAA 57.184 29.630 0.00 0.00 33.96 1.40
358 362 9.816354 TTCTTGATACGACAATGAAGATCAATA 57.184 29.630 0.00 0.00 33.96 1.90
359 363 8.722480 TTCTTGATACGACAATGAAGATCAAT 57.278 30.769 0.00 0.00 33.96 2.57
360 364 8.034804 TCTTCTTGATACGACAATGAAGATCAA 58.965 33.333 18.47 0.00 38.07 2.57
361 365 7.547227 TCTTCTTGATACGACAATGAAGATCA 58.453 34.615 18.47 0.00 38.07 2.92
362 366 7.993821 TCTTCTTGATACGACAATGAAGATC 57.006 36.000 18.47 0.00 38.07 2.75
398 402 4.938226 GCATAGGCCAGTGATTATACCTTC 59.062 45.833 5.01 0.00 0.00 3.46
404 408 6.378661 TCTTATGCATAGGCCAGTGATTAT 57.621 37.500 10.85 1.96 40.13 1.28
505 509 3.394274 TCCCTGAGAAATCACCTGACAAA 59.606 43.478 0.00 0.00 0.00 2.83
507 511 2.568956 CTCCCTGAGAAATCACCTGACA 59.431 50.000 0.00 0.00 0.00 3.58
533 537 4.201920 GGATGGAAAACGAACTATTCTGCC 60.202 45.833 0.00 0.00 0.00 4.85
700 705 0.035915 TGGCCATTAAGCTACACGCA 60.036 50.000 0.00 0.00 42.61 5.24
840 849 8.456471 GGAAATGGTGTATTGTTAGGAGTAAAC 58.544 37.037 0.00 0.00 0.00 2.01
990 1001 7.511268 TCCCCTAGTTATATACGCACAAATTT 58.489 34.615 0.00 0.00 0.00 1.82
1038 1053 8.507582 TCCATCTCTCCTAGATAGTGTACTAA 57.492 38.462 0.00 0.00 43.42 2.24
1660 3560 7.786178 TGGGAATAAGATGATTTCGTACAAG 57.214 36.000 0.00 0.00 0.00 3.16
1839 3762 2.791560 CACTTCCTCTATCACAATCGCG 59.208 50.000 0.00 0.00 0.00 5.87
1866 3789 1.064825 TGGTCTTCTTTGAGGTCCCC 58.935 55.000 0.00 0.00 0.00 4.81
1924 3847 7.661437 TGAGCAGAAAGTTCATGTACAGTTAAT 59.339 33.333 0.33 0.00 32.06 1.40
1938 3861 8.798859 AACATATGTTAGATGAGCAGAAAGTT 57.201 30.769 19.51 0.00 36.32 2.66
1980 3907 5.238650 ACGAAGGTTTTGAAACAGAATCGAT 59.761 36.000 19.42 0.00 40.63 3.59
1983 3910 6.495706 AGAACGAAGGTTTTGAAACAGAATC 58.504 36.000 8.68 1.17 40.63 2.52
2002 3929 5.130519 CGTGTTTCATGACACTTAAGAACG 58.869 41.667 10.09 9.19 45.96 3.95
2016 3943 4.427312 GACCTATACCGAACGTGTTTCAT 58.573 43.478 0.00 0.00 33.24 2.57
2017 3945 3.670359 CGACCTATACCGAACGTGTTTCA 60.670 47.826 0.00 0.00 33.24 2.69
2042 3972 6.716628 TCTCCAGCAAATGTACTGAGAAATTT 59.283 34.615 0.00 0.00 35.90 1.82
2087 4017 3.321682 CCACCATCTTTTTCAGGCTTGAA 59.678 43.478 7.24 7.24 41.44 2.69
2100 4030 4.574674 TGTATGCTTCTTCCACCATCTT 57.425 40.909 0.00 0.00 0.00 2.40
2123 4053 1.318158 GGAATGGCTTCAGGGTGCTG 61.318 60.000 0.00 0.00 32.70 4.41
2255 5464 5.674148 CGTGAACAATCTTCAGATAATTGCG 59.326 40.000 5.55 0.00 34.47 4.85
2616 10271 4.224370 ACCTGTAGATTAACCATGAACGGT 59.776 41.667 0.00 0.00 42.71 4.83
2809 10468 0.771755 AAGGGAGTCTGGAACCAACC 59.228 55.000 0.00 0.00 0.00 3.77
2960 10619 2.093973 AGAAATACTGCGAGTCACAGGG 60.094 50.000 12.62 0.00 39.55 4.45
2986 10645 6.127619 GGTTGATGGAAATCAAAAGGTAGAGG 60.128 42.308 2.86 0.00 41.61 3.69
3280 10939 4.098914 AGATTCTTGGTGGTTGCTGTTA 57.901 40.909 0.00 0.00 0.00 2.41
3455 11114 6.125029 AGCTTGGTCATATAGCTGTGAAATT 58.875 36.000 0.00 0.00 43.25 1.82
3478 11149 3.860641 AGAAACAAAACTGGCCAAACAG 58.139 40.909 7.01 0.00 44.03 3.16
3600 11273 1.610554 GACATTTCCGGACGGAGGGA 61.611 60.000 13.64 4.95 46.06 4.20
3601 11274 1.153429 GACATTTCCGGACGGAGGG 60.153 63.158 13.64 9.67 46.06 4.30
3602 11275 0.178068 ATGACATTTCCGGACGGAGG 59.822 55.000 13.64 10.00 46.06 4.30
3603 11276 1.134818 TGATGACATTTCCGGACGGAG 60.135 52.381 13.64 5.31 46.06 4.63
3604 11277 0.899019 TGATGACATTTCCGGACGGA 59.101 50.000 1.83 9.76 43.52 4.69
3605 11278 1.732941 TTGATGACATTTCCGGACGG 58.267 50.000 1.83 3.96 0.00 4.79
3606 11279 3.822594 TTTTGATGACATTTCCGGACG 57.177 42.857 1.83 0.00 0.00 4.79
3607 11280 5.309323 TCATTTTGATGACATTTCCGGAC 57.691 39.130 1.83 0.00 0.00 4.79
3608 11281 5.973899 TTCATTTTGATGACATTTCCGGA 57.026 34.783 0.00 0.00 0.00 5.14
3609 11282 8.700722 TTTATTCATTTTGATGACATTTCCGG 57.299 30.769 0.00 0.00 0.00 5.14
3613 11286 9.452287 CCCCTTTTATTCATTTTGATGACATTT 57.548 29.630 0.00 0.00 0.00 2.32
3614 11287 8.824783 TCCCCTTTTATTCATTTTGATGACATT 58.175 29.630 0.00 0.00 0.00 2.71
3615 11288 8.378115 TCCCCTTTTATTCATTTTGATGACAT 57.622 30.769 0.00 0.00 0.00 3.06
3616 11289 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
3617 11290 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
3618 11291 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
3621 11294 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
3627 11300 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
3635 11308 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
3647 11320 9.542462 GGTGTATGCAGAACTAAAATACATCTA 57.458 33.333 0.00 0.00 36.44 1.98
3648 11321 7.499232 GGGTGTATGCAGAACTAAAATACATCT 59.501 37.037 0.00 0.00 35.88 2.90
3649 11322 7.255139 GGGGTGTATGCAGAACTAAAATACATC 60.255 40.741 0.00 0.00 36.44 3.06
3650 11323 6.546034 GGGGTGTATGCAGAACTAAAATACAT 59.454 38.462 0.00 0.00 36.44 2.29
3651 11324 5.883673 GGGGTGTATGCAGAACTAAAATACA 59.116 40.000 0.00 0.00 32.71 2.29
3652 11325 6.120220 AGGGGTGTATGCAGAACTAAAATAC 58.880 40.000 0.00 0.00 0.00 1.89
3653 11326 6.321821 AGGGGTGTATGCAGAACTAAAATA 57.678 37.500 0.00 0.00 0.00 1.40
3654 11327 5.193099 AGGGGTGTATGCAGAACTAAAAT 57.807 39.130 0.00 0.00 0.00 1.82
3655 11328 4.650972 AGGGGTGTATGCAGAACTAAAA 57.349 40.909 0.00 0.00 0.00 1.52
3656 11329 4.650972 AAGGGGTGTATGCAGAACTAAA 57.349 40.909 0.00 0.00 0.00 1.85
3657 11330 4.650972 AAAGGGGTGTATGCAGAACTAA 57.349 40.909 0.00 0.00 0.00 2.24
3658 11331 4.650972 AAAAGGGGTGTATGCAGAACTA 57.349 40.909 0.00 0.00 0.00 2.24
3659 11332 3.525800 AAAAGGGGTGTATGCAGAACT 57.474 42.857 0.00 0.00 0.00 3.01
3660 11333 3.320826 ACAAAAAGGGGTGTATGCAGAAC 59.679 43.478 0.00 0.00 0.00 3.01
3661 11334 3.571590 ACAAAAAGGGGTGTATGCAGAA 58.428 40.909 0.00 0.00 0.00 3.02
3662 11335 3.153919 GACAAAAAGGGGTGTATGCAGA 58.846 45.455 0.00 0.00 0.00 4.26
3663 11336 2.231235 GGACAAAAAGGGGTGTATGCAG 59.769 50.000 0.00 0.00 0.00 4.41
3664 11337 2.243810 GGACAAAAAGGGGTGTATGCA 58.756 47.619 0.00 0.00 0.00 3.96
3665 11338 2.243810 TGGACAAAAAGGGGTGTATGC 58.756 47.619 0.00 0.00 0.00 3.14
3666 11339 5.482163 AAATGGACAAAAAGGGGTGTATG 57.518 39.130 0.00 0.00 0.00 2.39
3667 11340 5.604650 TCAAAATGGACAAAAAGGGGTGTAT 59.395 36.000 0.00 0.00 0.00 2.29
3668 11341 4.962995 TCAAAATGGACAAAAAGGGGTGTA 59.037 37.500 0.00 0.00 0.00 2.90
3669 11342 3.777522 TCAAAATGGACAAAAAGGGGTGT 59.222 39.130 0.00 0.00 0.00 4.16
3670 11343 4.414337 TCAAAATGGACAAAAAGGGGTG 57.586 40.909 0.00 0.00 0.00 4.61
3671 11344 4.657969 TCATCAAAATGGACAAAAAGGGGT 59.342 37.500 0.00 0.00 33.42 4.95
3672 11345 4.996758 GTCATCAAAATGGACAAAAAGGGG 59.003 41.667 0.00 0.00 33.42 4.79
3673 11346 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
3674 11347 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
3675 11348 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
3676 11349 8.558973 AAACTTGTCATCAAAATGGACAAAAA 57.441 26.923 7.70 0.00 34.98 1.94
3677 11350 8.558973 AAAACTTGTCATCAAAATGGACAAAA 57.441 26.923 7.70 0.00 34.98 2.44
3678 11351 8.558973 AAAAACTTGTCATCAAAATGGACAAA 57.441 26.923 7.70 0.00 34.98 2.83
3700 11373 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
3701 11374 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3702 11375 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
3703 11376 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
3704 11377 0.465097 GATGTACTCCCTCCGTCCGA 60.465 60.000 0.00 0.00 0.00 4.55
3705 11378 0.465824 AGATGTACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
3706 11379 1.777941 AAGATGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3707 11380 3.243468 GCTTAAGATGTACTCCCTCCGTC 60.243 52.174 6.67 0.00 0.00 4.79
3708 11381 2.694109 GCTTAAGATGTACTCCCTCCGT 59.306 50.000 6.67 0.00 0.00 4.69
3709 11382 2.959707 AGCTTAAGATGTACTCCCTCCG 59.040 50.000 6.67 0.00 0.00 4.63
3710 11383 4.219919 AGAGCTTAAGATGTACTCCCTCC 58.780 47.826 6.67 0.00 0.00 4.30
3711 11384 5.828859 TGTAGAGCTTAAGATGTACTCCCTC 59.171 44.000 23.48 10.17 32.33 4.30
3712 11385 5.767670 TGTAGAGCTTAAGATGTACTCCCT 58.232 41.667 23.48 5.54 32.33 4.20
3713 11386 6.265649 TCATGTAGAGCTTAAGATGTACTCCC 59.734 42.308 23.48 3.60 32.33 4.30
3714 11387 7.278461 TCATGTAGAGCTTAAGATGTACTCC 57.722 40.000 23.48 3.91 32.33 3.85
3715 11388 8.026607 GGATCATGTAGAGCTTAAGATGTACTC 58.973 40.741 23.48 14.76 32.33 2.59
3716 11389 7.507277 TGGATCATGTAGAGCTTAAGATGTACT 59.493 37.037 23.48 8.07 32.33 2.73
3717 11390 7.661968 TGGATCATGTAGAGCTTAAGATGTAC 58.338 38.462 18.33 18.33 31.81 2.90
3751 11424 5.049474 GCTGGATGCGTCATATGTTATCAAA 60.049 40.000 8.47 0.00 0.00 2.69
3841 11514 5.001874 AGACTCCGTCAAAAATTAAGGGAC 58.998 41.667 0.00 0.00 34.60 4.46
3842 11515 5.237236 AGACTCCGTCAAAAATTAAGGGA 57.763 39.130 0.00 0.00 34.60 4.20
3843 11516 6.403878 TCTAGACTCCGTCAAAAATTAAGGG 58.596 40.000 0.00 0.00 34.60 3.95
3844 11517 8.494016 AATCTAGACTCCGTCAAAAATTAAGG 57.506 34.615 0.00 0.00 34.60 2.69
3845 11518 8.321716 CGAATCTAGACTCCGTCAAAAATTAAG 58.678 37.037 0.00 0.00 34.60 1.85
3846 11519 7.277098 CCGAATCTAGACTCCGTCAAAAATTAA 59.723 37.037 0.00 0.00 34.60 1.40
3847 11520 6.755141 CCGAATCTAGACTCCGTCAAAAATTA 59.245 38.462 0.00 0.00 34.60 1.40
3848 11521 5.581085 CCGAATCTAGACTCCGTCAAAAATT 59.419 40.000 0.00 0.00 34.60 1.82
3849 11522 5.109903 CCGAATCTAGACTCCGTCAAAAAT 58.890 41.667 0.00 0.00 34.60 1.82
3850 11523 4.021719 ACCGAATCTAGACTCCGTCAAAAA 60.022 41.667 0.00 0.00 34.60 1.94
3851 11524 3.508793 ACCGAATCTAGACTCCGTCAAAA 59.491 43.478 0.00 0.00 34.60 2.44
3852 11525 3.087031 ACCGAATCTAGACTCCGTCAAA 58.913 45.455 0.00 0.00 34.60 2.69
3853 11526 2.681848 GACCGAATCTAGACTCCGTCAA 59.318 50.000 14.96 0.00 34.60 3.18
3854 11527 2.286872 GACCGAATCTAGACTCCGTCA 58.713 52.381 14.96 0.00 34.60 4.35
3855 11528 1.603326 GGACCGAATCTAGACTCCGTC 59.397 57.143 12.43 12.43 0.00 4.79
3856 11529 1.677942 GGACCGAATCTAGACTCCGT 58.322 55.000 0.00 0.00 0.00 4.69
3857 11530 0.953003 GGGACCGAATCTAGACTCCG 59.047 60.000 0.00 0.00 0.00 4.63
3858 11531 2.232399 GAGGGACCGAATCTAGACTCC 58.768 57.143 0.00 0.00 0.00 3.85
3859 11532 2.933573 TGAGGGACCGAATCTAGACTC 58.066 52.381 0.00 0.00 0.00 3.36
3860 11533 3.025262 GTTGAGGGACCGAATCTAGACT 58.975 50.000 0.00 0.00 0.00 3.24
3861 11534 3.025262 AGTTGAGGGACCGAATCTAGAC 58.975 50.000 0.00 0.00 0.00 2.59
3862 11535 3.383698 AGTTGAGGGACCGAATCTAGA 57.616 47.619 0.00 0.00 0.00 2.43
3863 11536 4.827835 TCATAGTTGAGGGACCGAATCTAG 59.172 45.833 0.00 0.00 0.00 2.43
3864 11537 4.800023 TCATAGTTGAGGGACCGAATCTA 58.200 43.478 0.00 0.00 0.00 1.98
3865 11538 3.643237 TCATAGTTGAGGGACCGAATCT 58.357 45.455 0.00 0.00 0.00 2.40
3866 11539 4.402056 TTCATAGTTGAGGGACCGAATC 57.598 45.455 0.00 0.00 32.27 2.52
3867 11540 4.514401 GTTTCATAGTTGAGGGACCGAAT 58.486 43.478 0.00 0.00 32.27 3.34
3868 11541 3.307199 GGTTTCATAGTTGAGGGACCGAA 60.307 47.826 0.00 0.00 32.27 4.30
3869 11542 2.235402 GGTTTCATAGTTGAGGGACCGA 59.765 50.000 0.00 0.00 32.27 4.69
3870 11543 2.027561 TGGTTTCATAGTTGAGGGACCG 60.028 50.000 0.00 0.00 35.54 4.79
3871 11544 3.263425 TCTGGTTTCATAGTTGAGGGACC 59.737 47.826 0.00 0.00 34.39 4.46
3872 11545 4.254492 GTCTGGTTTCATAGTTGAGGGAC 58.746 47.826 0.00 0.00 32.27 4.46
3873 11546 3.907474 TGTCTGGTTTCATAGTTGAGGGA 59.093 43.478 0.00 0.00 32.27 4.20
3874 11547 4.286297 TGTCTGGTTTCATAGTTGAGGG 57.714 45.455 0.00 0.00 32.27 4.30
3875 11548 5.063204 TGTTGTCTGGTTTCATAGTTGAGG 58.937 41.667 0.00 0.00 32.27 3.86
3876 11549 6.605849 CATGTTGTCTGGTTTCATAGTTGAG 58.394 40.000 0.00 0.00 32.27 3.02
3877 11550 5.048782 GCATGTTGTCTGGTTTCATAGTTGA 60.049 40.000 0.00 0.00 0.00 3.18
3878 11551 5.156355 GCATGTTGTCTGGTTTCATAGTTG 58.844 41.667 0.00 0.00 0.00 3.16
3879 11552 4.826733 TGCATGTTGTCTGGTTTCATAGTT 59.173 37.500 0.00 0.00 0.00 2.24
3880 11553 4.216257 GTGCATGTTGTCTGGTTTCATAGT 59.784 41.667 0.00 0.00 0.00 2.12
3881 11554 4.379813 GGTGCATGTTGTCTGGTTTCATAG 60.380 45.833 0.00 0.00 0.00 2.23
3882 11555 3.505680 GGTGCATGTTGTCTGGTTTCATA 59.494 43.478 0.00 0.00 0.00 2.15
3883 11556 2.297033 GGTGCATGTTGTCTGGTTTCAT 59.703 45.455 0.00 0.00 0.00 2.57
3884 11557 1.680735 GGTGCATGTTGTCTGGTTTCA 59.319 47.619 0.00 0.00 0.00 2.69
3885 11558 1.956477 AGGTGCATGTTGTCTGGTTTC 59.044 47.619 0.00 0.00 0.00 2.78
3886 11559 1.956477 GAGGTGCATGTTGTCTGGTTT 59.044 47.619 0.00 0.00 0.00 3.27
3887 11560 1.609208 GAGGTGCATGTTGTCTGGTT 58.391 50.000 0.00 0.00 0.00 3.67
3888 11561 0.250901 GGAGGTGCATGTTGTCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
3889 11562 0.250858 TGGAGGTGCATGTTGTCTGG 60.251 55.000 0.00 0.00 0.00 3.86
3890 11563 1.267806 GTTGGAGGTGCATGTTGTCTG 59.732 52.381 0.00 0.00 0.00 3.51
3891 11564 1.143684 AGTTGGAGGTGCATGTTGTCT 59.856 47.619 0.00 0.00 0.00 3.41
3892 11565 1.537202 GAGTTGGAGGTGCATGTTGTC 59.463 52.381 0.00 0.00 0.00 3.18
3893 11566 1.143684 AGAGTTGGAGGTGCATGTTGT 59.856 47.619 0.00 0.00 0.00 3.32
3894 11567 1.901591 AGAGTTGGAGGTGCATGTTG 58.098 50.000 0.00 0.00 0.00 3.33
3895 11568 2.664402 AAGAGTTGGAGGTGCATGTT 57.336 45.000 0.00 0.00 0.00 2.71
3896 11569 3.788227 TTAAGAGTTGGAGGTGCATGT 57.212 42.857 0.00 0.00 0.00 3.21
3897 11570 4.321230 GGTTTTAAGAGTTGGAGGTGCATG 60.321 45.833 0.00 0.00 0.00 4.06
3898 11571 3.826729 GGTTTTAAGAGTTGGAGGTGCAT 59.173 43.478 0.00 0.00 0.00 3.96
3899 11572 3.219281 GGTTTTAAGAGTTGGAGGTGCA 58.781 45.455 0.00 0.00 0.00 4.57
3900 11573 2.225727 CGGTTTTAAGAGTTGGAGGTGC 59.774 50.000 0.00 0.00 0.00 5.01
3901 11574 2.812011 CCGGTTTTAAGAGTTGGAGGTG 59.188 50.000 0.00 0.00 0.00 4.00
3902 11575 2.707257 TCCGGTTTTAAGAGTTGGAGGT 59.293 45.455 0.00 0.00 0.00 3.85
3903 11576 3.072211 GTCCGGTTTTAAGAGTTGGAGG 58.928 50.000 0.00 0.00 0.00 4.30
3904 11577 3.735591 TGTCCGGTTTTAAGAGTTGGAG 58.264 45.455 0.00 0.00 0.00 3.86
3905 11578 3.842007 TGTCCGGTTTTAAGAGTTGGA 57.158 42.857 0.00 0.00 0.00 3.53
3906 11579 3.881089 ACTTGTCCGGTTTTAAGAGTTGG 59.119 43.478 0.00 0.00 0.00 3.77
3907 11580 5.494632 AACTTGTCCGGTTTTAAGAGTTG 57.505 39.130 0.00 0.00 0.00 3.16
3908 11581 5.648960 TGAAACTTGTCCGGTTTTAAGAGTT 59.351 36.000 0.00 1.07 37.07 3.01
3909 11582 5.187687 TGAAACTTGTCCGGTTTTAAGAGT 58.812 37.500 0.00 0.00 37.07 3.24
3910 11583 5.744666 TGAAACTTGTCCGGTTTTAAGAG 57.255 39.130 0.00 0.00 37.07 2.85
3911 11584 5.239963 GGATGAAACTTGTCCGGTTTTAAGA 59.760 40.000 0.00 0.00 37.07 2.10
3912 11585 5.240844 AGGATGAAACTTGTCCGGTTTTAAG 59.759 40.000 0.00 4.84 37.07 1.85
3913 11586 5.134661 AGGATGAAACTTGTCCGGTTTTAA 58.865 37.500 0.00 0.00 37.07 1.52
3914 11587 4.721132 AGGATGAAACTTGTCCGGTTTTA 58.279 39.130 0.00 0.00 37.07 1.52
3915 11588 3.562182 AGGATGAAACTTGTCCGGTTTT 58.438 40.909 0.00 0.00 37.07 2.43
3916 11589 3.146847 GAGGATGAAACTTGTCCGGTTT 58.853 45.455 0.00 0.00 39.25 3.27
3917 11590 2.552373 GGAGGATGAAACTTGTCCGGTT 60.552 50.000 0.00 0.00 37.12 4.44
3918 11591 1.003233 GGAGGATGAAACTTGTCCGGT 59.997 52.381 0.00 0.00 37.12 5.28
3919 11592 1.279271 AGGAGGATGAAACTTGTCCGG 59.721 52.381 0.00 0.00 37.12 5.14
3920 11593 2.622436 GAGGAGGATGAAACTTGTCCG 58.378 52.381 0.00 0.00 37.12 4.79
3921 11594 2.356227 GGGAGGAGGATGAAACTTGTCC 60.356 54.545 0.00 0.00 0.00 4.02
3922 11595 2.678190 CGGGAGGAGGATGAAACTTGTC 60.678 54.545 0.00 0.00 0.00 3.18
3923 11596 1.279271 CGGGAGGAGGATGAAACTTGT 59.721 52.381 0.00 0.00 0.00 3.16
3924 11597 2.029838 CGGGAGGAGGATGAAACTTG 57.970 55.000 0.00 0.00 0.00 3.16
3943 11616 0.243636 CATCAAGACCGGCCAAAACC 59.756 55.000 0.00 0.00 0.00 3.27
3944 11617 0.388520 GCATCAAGACCGGCCAAAAC 60.389 55.000 0.00 0.00 0.00 2.43
3945 11618 0.539438 AGCATCAAGACCGGCCAAAA 60.539 50.000 0.00 0.00 0.00 2.44
3946 11619 1.074775 AGCATCAAGACCGGCCAAA 59.925 52.632 0.00 0.00 0.00 3.28
3947 11620 1.675310 CAGCATCAAGACCGGCCAA 60.675 57.895 0.00 0.00 0.00 4.52
3948 11621 2.046023 CAGCATCAAGACCGGCCA 60.046 61.111 0.00 0.00 0.00 5.36
3949 11622 2.825836 CCAGCATCAAGACCGGCC 60.826 66.667 0.00 0.00 0.00 6.13
3950 11623 3.512516 GCCAGCATCAAGACCGGC 61.513 66.667 0.00 0.00 0.00 6.13
3951 11624 1.817099 GAGCCAGCATCAAGACCGG 60.817 63.158 0.00 0.00 0.00 5.28
3952 11625 0.463295 ATGAGCCAGCATCAAGACCG 60.463 55.000 0.00 0.00 0.00 4.79
3953 11626 1.307097 GATGAGCCAGCATCAAGACC 58.693 55.000 6.87 0.00 43.21 3.85
3954 11627 1.307097 GGATGAGCCAGCATCAAGAC 58.693 55.000 12.19 0.00 45.03 3.01
3955 11628 0.182061 GGGATGAGCCAGCATCAAGA 59.818 55.000 12.19 0.00 45.03 3.02
3956 11629 1.164662 CGGGATGAGCCAGCATCAAG 61.165 60.000 12.19 3.84 45.03 3.02
3957 11630 1.153107 CGGGATGAGCCAGCATCAA 60.153 57.895 12.19 0.00 45.03 2.57
3958 11631 2.507452 CGGGATGAGCCAGCATCA 59.493 61.111 12.19 0.00 45.03 3.07
3959 11632 2.281345 CCGGGATGAGCCAGCATC 60.281 66.667 0.00 0.00 43.04 3.91
3960 11633 2.215451 AAACCGGGATGAGCCAGCAT 62.215 55.000 6.32 0.00 38.95 3.79
3961 11634 2.424842 AAAACCGGGATGAGCCAGCA 62.425 55.000 6.32 0.00 38.95 4.41
3962 11635 1.678970 AAAACCGGGATGAGCCAGC 60.679 57.895 6.32 0.00 38.95 4.85
3963 11636 0.322456 TCAAAACCGGGATGAGCCAG 60.322 55.000 6.32 0.00 38.95 4.85
3964 11637 0.608035 GTCAAAACCGGGATGAGCCA 60.608 55.000 6.32 0.00 38.95 4.75
3965 11638 1.313091 GGTCAAAACCGGGATGAGCC 61.313 60.000 19.00 13.27 35.99 4.70
3966 11639 2.180674 GGTCAAAACCGGGATGAGC 58.819 57.895 16.28 16.28 35.36 4.26
3975 11648 1.133025 CAGCATGGATCGGTCAAAACC 59.867 52.381 0.00 0.00 42.66 3.27
3976 11649 2.083774 TCAGCATGGATCGGTCAAAAC 58.916 47.619 0.00 0.00 36.16 2.43
3977 11650 2.083774 GTCAGCATGGATCGGTCAAAA 58.916 47.619 0.00 0.00 36.16 2.44
3978 11651 1.737838 GTCAGCATGGATCGGTCAAA 58.262 50.000 0.00 0.00 36.16 2.69
3979 11652 0.460109 CGTCAGCATGGATCGGTCAA 60.460 55.000 0.00 0.00 36.16 3.18
3980 11653 1.141665 CGTCAGCATGGATCGGTCA 59.858 57.895 0.00 0.00 36.16 4.02
3981 11654 1.141881 ACGTCAGCATGGATCGGTC 59.858 57.895 0.00 0.00 36.16 4.79
3982 11655 1.153568 CACGTCAGCATGGATCGGT 60.154 57.895 0.00 0.00 36.16 4.69
3983 11656 1.884464 CCACGTCAGCATGGATCGG 60.884 63.158 0.00 0.00 38.34 4.18
3984 11657 2.528743 GCCACGTCAGCATGGATCG 61.529 63.158 2.25 0.00 38.34 3.69
3985 11658 1.026182 TTGCCACGTCAGCATGGATC 61.026 55.000 10.39 0.00 40.59 3.36
3986 11659 0.608856 TTTGCCACGTCAGCATGGAT 60.609 50.000 10.39 0.00 40.59 3.41
3987 11660 1.228094 TTTGCCACGTCAGCATGGA 60.228 52.632 10.39 0.00 40.59 3.41
3988 11661 1.210931 CTTTGCCACGTCAGCATGG 59.789 57.895 10.39 0.00 40.59 3.66
3989 11662 0.592637 TTCTTTGCCACGTCAGCATG 59.407 50.000 10.39 7.27 40.59 4.06
3990 11663 1.001378 GTTTCTTTGCCACGTCAGCAT 60.001 47.619 10.39 0.00 40.59 3.79
3991 11664 0.380378 GTTTCTTTGCCACGTCAGCA 59.620 50.000 5.70 5.70 38.81 4.41
3992 11665 0.317854 GGTTTCTTTGCCACGTCAGC 60.318 55.000 0.04 0.04 0.00 4.26
3993 11666 0.310854 GGGTTTCTTTGCCACGTCAG 59.689 55.000 0.00 0.00 0.00 3.51
3994 11667 1.104577 GGGGTTTCTTTGCCACGTCA 61.105 55.000 0.00 0.00 0.00 4.35
3995 11668 1.658114 GGGGTTTCTTTGCCACGTC 59.342 57.895 0.00 0.00 0.00 4.34
3996 11669 1.830847 GGGGGTTTCTTTGCCACGT 60.831 57.895 0.00 0.00 0.00 4.49
3997 11670 2.914908 CGGGGGTTTCTTTGCCACG 61.915 63.158 0.00 0.00 0.00 4.94
3998 11671 1.110518 TTCGGGGGTTTCTTTGCCAC 61.111 55.000 0.00 0.00 0.00 5.01
3999 11672 0.178947 ATTCGGGGGTTTCTTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
4000 11673 0.973632 AATTCGGGGGTTTCTTTGCC 59.026 50.000 0.00 0.00 0.00 4.52
4001 11674 1.616374 TCAATTCGGGGGTTTCTTTGC 59.384 47.619 0.00 0.00 0.00 3.68
4002 11675 2.890945 AGTCAATTCGGGGGTTTCTTTG 59.109 45.455 0.00 0.00 0.00 2.77
4003 11676 3.238788 AGTCAATTCGGGGGTTTCTTT 57.761 42.857 0.00 0.00 0.00 2.52
4004 11677 2.971901 AGTCAATTCGGGGGTTTCTT 57.028 45.000 0.00 0.00 0.00 2.52
4005 11678 2.554564 GGAAGTCAATTCGGGGGTTTCT 60.555 50.000 0.00 0.00 38.95 2.52
4006 11679 1.816835 GGAAGTCAATTCGGGGGTTTC 59.183 52.381 0.00 0.00 38.95 2.78
4007 11680 1.549265 GGGAAGTCAATTCGGGGGTTT 60.549 52.381 0.00 0.00 38.95 3.27
4008 11681 0.039180 GGGAAGTCAATTCGGGGGTT 59.961 55.000 0.00 0.00 38.95 4.11
4009 11682 1.689412 GGGAAGTCAATTCGGGGGT 59.311 57.895 0.00 0.00 38.95 4.95
4010 11683 1.451387 CGGGAAGTCAATTCGGGGG 60.451 63.158 0.00 0.00 38.95 5.40
4011 11684 1.451387 CCGGGAAGTCAATTCGGGG 60.451 63.158 0.00 0.00 38.95 5.73
4012 11685 0.322187 AACCGGGAAGTCAATTCGGG 60.322 55.000 6.32 0.00 44.36 5.14
4013 11686 1.084289 GAACCGGGAAGTCAATTCGG 58.916 55.000 6.32 0.00 45.42 4.30
4014 11687 1.084289 GGAACCGGGAAGTCAATTCG 58.916 55.000 6.32 0.00 38.95 3.34
4015 11688 2.357075 GAGGAACCGGGAAGTCAATTC 58.643 52.381 6.32 0.00 37.17 2.17
4016 11689 2.491675 GAGGAACCGGGAAGTCAATT 57.508 50.000 6.32 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.