Multiple sequence alignment - TraesCS7D01G319300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G319300 chr7D 100.000 4796 0 0 779 5574 408370920 408366125 0.000000e+00 8857.0
1 TraesCS7D01G319300 chr7D 100.000 221 0 0 1 221 408371698 408371478 5.200000e-110 409.0
2 TraesCS7D01G319300 chr7D 87.383 214 24 2 5360 5573 119901743 119901953 5.580000e-60 243.0
3 TraesCS7D01G319300 chr7D 83.784 148 24 0 5106 5253 408366126 408366273 2.090000e-29 141.0
4 TraesCS7D01G319300 chr7B 95.695 2741 96 11 2374 5105 422933130 422930403 0.000000e+00 4388.0
5 TraesCS7D01G319300 chr7B 97.143 1610 26 9 779 2369 422934855 422933247 0.000000e+00 2700.0
6 TraesCS7D01G319300 chr7B 87.550 249 3 8 1 221 422935176 422934928 4.280000e-66 263.0
7 TraesCS7D01G319300 chr7B 82.081 173 18 4 3168 3327 382607707 382607535 9.740000e-28 135.0
8 TraesCS7D01G319300 chr7A 94.907 2749 87 22 2369 5105 468463288 468460581 0.000000e+00 4252.0
9 TraesCS7D01G319300 chr7A 95.692 1625 31 17 779 2369 468465027 468463408 0.000000e+00 2577.0
10 TraesCS7D01G319300 chr7A 94.795 365 19 0 4741 5105 467652134 467651770 2.250000e-158 569.0
11 TraesCS7D01G319300 chr7A 90.123 243 2 1 1 221 468465341 468465099 4.220000e-76 296.0
12 TraesCS7D01G319300 chr7A 84.868 152 23 0 5108 5259 287497758 287497607 2.690000e-33 154.0
13 TraesCS7D01G319300 chr7A 83.019 159 25 2 5102 5259 722081655 722081498 5.820000e-30 143.0
14 TraesCS7D01G319300 chr3D 89.706 204 21 0 5371 5574 485233846 485233643 1.540000e-65 261.0
15 TraesCS7D01G319300 chr3D 79.355 155 26 4 3173 3326 100224989 100224840 2.750000e-18 104.0
16 TraesCS7D01G319300 chr5D 87.923 207 25 0 5367 5573 112339707 112339501 1.550000e-60 244.0
17 TraesCS7D01G319300 chr5A 88.235 204 23 1 5372 5574 54466999 54467202 5.580000e-60 243.0
18 TraesCS7D01G319300 chr5A 86.916 214 26 1 5360 5573 616921375 616921586 7.220000e-59 239.0
19 TraesCS7D01G319300 chr5A 81.410 156 29 0 5104 5259 641054084 641053929 1.630000e-25 128.0
20 TraesCS7D01G319300 chr2B 88.832 197 20 2 5378 5573 785623217 785623412 2.010000e-59 241.0
21 TraesCS7D01G319300 chr2B 87.037 54 7 0 3207 3260 373707638 373707585 1.680000e-05 62.1
22 TraesCS7D01G319300 chr6B 87.805 205 23 2 5371 5574 666040016 666039813 7.220000e-59 239.0
23 TraesCS7D01G319300 chr6B 81.944 144 26 0 5110 5253 666039818 666039961 7.580000e-24 122.0
24 TraesCS7D01G319300 chr5B 86.512 215 27 1 5360 5574 565897043 565897255 9.340000e-58 235.0
25 TraesCS7D01G319300 chr5B 90.909 55 5 0 3164 3218 566681398 566681452 2.150000e-09 75.0
26 TraesCS7D01G319300 chr2D 86.957 207 27 0 5368 5574 61788851 61789057 3.360000e-57 233.0
27 TraesCS7D01G319300 chr1A 83.871 155 23 2 5106 5259 407113492 407113645 4.500000e-31 147.0
28 TraesCS7D01G319300 chr1A 83.333 156 22 4 5106 5259 571922451 571922298 2.090000e-29 141.0
29 TraesCS7D01G319300 chr4A 81.212 165 29 2 5105 5268 4285741 4285578 1.260000e-26 132.0
30 TraesCS7D01G319300 chr2A 81.212 165 28 2 5104 5268 471257231 471257070 4.530000e-26 130.0
31 TraesCS7D01G319300 chr2A 83.673 98 9 3 3165 3262 42399367 42399457 9.950000e-13 86.1
32 TraesCS7D01G319300 chr6A 89.831 59 6 0 3204 3262 169207951 169208009 5.990000e-10 76.8
33 TraesCS7D01G319300 chr4B 91.837 49 4 0 3170 3218 398558004 398558052 1.000000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G319300 chr7D 408366125 408371698 5573 True 4633.000000 8857 100.000000 1 5574 2 chr7D.!!$R1 5573
1 TraesCS7D01G319300 chr7B 422930403 422935176 4773 True 2450.333333 4388 93.462667 1 5105 3 chr7B.!!$R2 5104
2 TraesCS7D01G319300 chr7A 468460581 468465341 4760 True 2375.000000 4252 93.574000 1 5105 3 chr7A.!!$R4 5104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1384 2.638744 GCATCCATGGCTCTTAGGC 58.361 57.895 6.96 0.0 41.77 3.93 F
2628 2822 1.656587 TCTGCAACCTGTATCCCACT 58.343 50.000 0.00 0.0 0.00 4.00 F
4417 4647 1.003580 GACCCTGCTGTCTTGATTCCA 59.996 52.381 0.00 0.0 32.39 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2981 3179 1.985473 AGTCAGAAATGCAACAGCCA 58.015 45.000 0.0 0.0 0.00 4.75 R
4438 4668 1.617263 CGGAAGAACCTCTCCCTCTCA 60.617 57.143 0.0 0.0 36.31 3.27 R
5404 5636 0.035820 GACATCCCTACCGCCAAACA 60.036 55.000 0.0 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1351 1384 2.638744 GCATCCATGGCTCTTAGGC 58.361 57.895 6.96 0.00 41.77 3.93
1575 1616 6.766467 GGTGTTTGGGGTTATAGATTAGTCAG 59.234 42.308 0.00 0.00 0.00 3.51
1783 1852 4.156739 TGCGGCAATTGTGTGATGTTAATA 59.843 37.500 7.40 0.00 0.00 0.98
2062 2132 9.988350 CTAACTGATGTTGACATAACAAATACC 57.012 33.333 0.00 0.00 36.57 2.73
2369 2441 4.128925 TGAGTCCTTAAGTATGCTGCAG 57.871 45.455 10.11 10.11 0.00 4.41
2370 2442 3.769300 TGAGTCCTTAAGTATGCTGCAGA 59.231 43.478 20.43 0.00 0.00 4.26
2371 2443 4.142071 TGAGTCCTTAAGTATGCTGCAGAG 60.142 45.833 20.43 2.50 0.00 3.35
2438 2632 3.838244 AGTCTGCTGGTGTGAAGTTTA 57.162 42.857 0.00 0.00 0.00 2.01
2439 2633 4.357918 AGTCTGCTGGTGTGAAGTTTAT 57.642 40.909 0.00 0.00 0.00 1.40
2628 2822 1.656587 TCTGCAACCTGTATCCCACT 58.343 50.000 0.00 0.00 0.00 4.00
2955 3153 9.667107 TTTCAATTAGGACTAAGGACATGTAAG 57.333 33.333 0.00 0.00 0.00 2.34
2963 3161 2.496899 AGGACATGTAAGCACTTGGG 57.503 50.000 0.00 0.00 34.84 4.12
2981 3179 2.306847 GGGTGTCAAGGTGTGTTTGAT 58.693 47.619 0.00 0.00 36.96 2.57
3147 3345 2.030185 CGTAGTTATGAGTAGCGCCCAT 60.030 50.000 2.29 5.58 0.00 4.00
3166 3364 2.924757 TATGGAGCAGCAAGGATCAG 57.075 50.000 0.00 0.00 0.00 2.90
3171 3369 1.467734 GAGCAGCAAGGATCAGTGTTG 59.532 52.381 0.00 7.18 0.00 3.33
3185 3383 3.441222 TCAGTGTTGCAAATATCAGCCAG 59.559 43.478 0.00 0.00 0.00 4.85
3186 3384 3.192001 CAGTGTTGCAAATATCAGCCAGT 59.808 43.478 0.00 0.00 0.00 4.00
3187 3385 3.828451 AGTGTTGCAAATATCAGCCAGTT 59.172 39.130 0.00 0.00 0.00 3.16
3188 3386 5.009631 AGTGTTGCAAATATCAGCCAGTTA 58.990 37.500 0.00 0.00 0.00 2.24
3189 3387 5.476599 AGTGTTGCAAATATCAGCCAGTTAA 59.523 36.000 0.00 0.00 0.00 2.01
3190 3388 6.153340 AGTGTTGCAAATATCAGCCAGTTAAT 59.847 34.615 0.00 0.00 0.00 1.40
3191 3389 6.473455 GTGTTGCAAATATCAGCCAGTTAATC 59.527 38.462 0.00 0.00 0.00 1.75
3192 3390 5.422666 TGCAAATATCAGCCAGTTAATCG 57.577 39.130 0.00 0.00 0.00 3.34
3193 3391 4.275689 TGCAAATATCAGCCAGTTAATCGG 59.724 41.667 0.00 0.00 0.00 4.18
3202 3400 3.185246 CCAGTTAATCGGCATCTCTGT 57.815 47.619 0.00 0.00 0.00 3.41
3203 3401 3.126831 CCAGTTAATCGGCATCTCTGTC 58.873 50.000 0.00 0.00 0.00 3.51
3204 3402 3.430790 CCAGTTAATCGGCATCTCTGTCA 60.431 47.826 0.00 0.00 0.00 3.58
3333 3551 6.203723 GCTATATCCTGAACATTGACAAGGAC 59.796 42.308 6.88 1.31 0.00 3.85
3353 3571 5.637387 AGGACAAAAACACATGTTTCAACAC 59.363 36.000 10.30 2.79 46.47 3.32
3409 3634 3.705072 AGGGAGCAAGTACCAGTATGTAC 59.295 47.826 0.00 0.00 41.13 2.90
3491 3716 7.283127 TCCTGTGTTGATTATCTAATTGCCTTC 59.717 37.037 0.00 0.00 0.00 3.46
3643 3873 8.786826 TTAACCATTACTTACATCCTCAACTG 57.213 34.615 0.00 0.00 0.00 3.16
3742 3972 5.411781 AGATAAACCTACTGCGAACTCTTG 58.588 41.667 0.00 0.00 0.00 3.02
3922 4152 2.363306 TGCAAGTGTGGACATTTCCT 57.637 45.000 0.00 0.00 43.31 3.36
3998 4228 3.828875 ACTACTTGCTAGGGATGAAGC 57.171 47.619 0.00 0.00 0.00 3.86
4171 4401 7.490962 CGGAGGTATGATCTATCACTCTATC 57.509 44.000 0.00 0.00 40.03 2.08
4271 4501 1.380524 AGACCACATAGACGAGTCCG 58.619 55.000 0.00 0.00 42.50 4.79
4313 4543 4.880537 AGGAGAAGATGCGCCGCG 62.881 66.667 8.83 8.83 32.50 6.46
4417 4647 1.003580 GACCCTGCTGTCTTGATTCCA 59.996 52.381 0.00 0.00 32.39 3.53
4480 4710 3.665675 GAAGAGCATGGACGGCGGT 62.666 63.158 13.24 0.00 36.08 5.68
4605 4835 6.099701 AGGCAGTGATTGGTATATACAGTTCA 59.900 38.462 14.70 10.13 0.00 3.18
4658 4890 4.802051 GATGCTTGCCTGGCGGGA 62.802 66.667 18.84 11.04 37.23 5.14
4659 4891 4.809496 ATGCTTGCCTGGCGGGAG 62.809 66.667 18.84 12.61 37.23 4.30
4667 4899 1.686325 GCCTGGCGGGAGAGATACAA 61.686 60.000 18.84 0.00 37.23 2.41
4756 4988 3.181445 ACACAGACTTGGTTGGCTTGATA 60.181 43.478 0.00 0.00 0.00 2.15
4879 5111 7.921745 AGTTAATCTGTTTTAGGCGAGAGATAC 59.078 37.037 0.00 0.00 0.00 2.24
4929 5161 3.720526 AGTGATCCACCATTCCATGAGAT 59.279 43.478 0.00 0.00 34.49 2.75
4945 5177 2.224597 TGAGATTTGCACTTGCCTCTGA 60.225 45.455 0.00 0.00 41.18 3.27
4997 5229 4.234574 TGTATCAGCAGTACTTTGTGTCG 58.765 43.478 0.00 0.00 0.00 4.35
5052 5284 2.292794 TAGTCGGCGGTCAATGGAGC 62.293 60.000 7.21 0.00 38.17 4.70
5105 5337 2.490509 TGAGCAATTGAGCATGTTGGAG 59.509 45.455 10.34 0.00 36.85 3.86
5106 5338 1.822990 AGCAATTGAGCATGTTGGAGG 59.177 47.619 10.34 0.00 36.85 4.30
5107 5339 1.738030 GCAATTGAGCATGTTGGAGGC 60.738 52.381 10.34 0.00 0.00 4.70
5108 5340 1.822990 CAATTGAGCATGTTGGAGGCT 59.177 47.619 0.00 0.00 46.87 4.58
5109 5341 3.018856 CAATTGAGCATGTTGGAGGCTA 58.981 45.455 0.00 0.00 43.32 3.93
5110 5342 2.877097 TTGAGCATGTTGGAGGCTAA 57.123 45.000 0.00 0.00 43.32 3.09
5111 5343 2.877097 TGAGCATGTTGGAGGCTAAA 57.123 45.000 0.00 0.00 43.32 1.85
5112 5344 3.370840 TGAGCATGTTGGAGGCTAAAT 57.629 42.857 0.00 0.00 43.32 1.40
5113 5345 3.700538 TGAGCATGTTGGAGGCTAAATT 58.299 40.909 0.00 0.00 43.32 1.82
5114 5346 4.088634 TGAGCATGTTGGAGGCTAAATTT 58.911 39.130 0.00 0.00 43.32 1.82
5115 5347 4.158394 TGAGCATGTTGGAGGCTAAATTTC 59.842 41.667 0.00 0.00 43.32 2.17
5116 5348 3.129287 AGCATGTTGGAGGCTAAATTTCG 59.871 43.478 0.00 0.00 40.84 3.46
5117 5349 3.119495 GCATGTTGGAGGCTAAATTTCGT 60.119 43.478 0.00 0.00 0.00 3.85
5118 5350 4.414852 CATGTTGGAGGCTAAATTTCGTG 58.585 43.478 0.00 0.00 0.00 4.35
5119 5351 3.482436 TGTTGGAGGCTAAATTTCGTGT 58.518 40.909 0.00 0.00 0.00 4.49
5120 5352 3.886505 TGTTGGAGGCTAAATTTCGTGTT 59.113 39.130 0.00 0.00 0.00 3.32
5121 5353 4.339814 TGTTGGAGGCTAAATTTCGTGTTT 59.660 37.500 0.00 0.00 0.00 2.83
5122 5354 5.163499 TGTTGGAGGCTAAATTTCGTGTTTT 60.163 36.000 0.00 0.00 0.00 2.43
5123 5355 4.865776 TGGAGGCTAAATTTCGTGTTTTG 58.134 39.130 0.00 0.00 0.00 2.44
5124 5356 4.580995 TGGAGGCTAAATTTCGTGTTTTGA 59.419 37.500 0.00 0.00 0.00 2.69
5125 5357 4.915667 GGAGGCTAAATTTCGTGTTTTGAC 59.084 41.667 0.00 0.00 0.00 3.18
5126 5358 4.866921 AGGCTAAATTTCGTGTTTTGACC 58.133 39.130 0.00 0.00 0.00 4.02
5127 5359 4.583073 AGGCTAAATTTCGTGTTTTGACCT 59.417 37.500 0.00 0.00 0.00 3.85
5128 5360 5.068591 AGGCTAAATTTCGTGTTTTGACCTT 59.931 36.000 0.00 0.00 0.00 3.50
5129 5361 5.751509 GGCTAAATTTCGTGTTTTGACCTTT 59.248 36.000 0.00 0.00 0.00 3.11
5130 5362 6.256975 GGCTAAATTTCGTGTTTTGACCTTTT 59.743 34.615 0.00 0.00 0.00 2.27
5131 5363 7.201574 GGCTAAATTTCGTGTTTTGACCTTTTT 60.202 33.333 0.00 0.00 0.00 1.94
5132 5364 7.844169 GCTAAATTTCGTGTTTTGACCTTTTTC 59.156 33.333 0.00 0.00 0.00 2.29
5133 5365 7.899178 AAATTTCGTGTTTTGACCTTTTTCT 57.101 28.000 0.00 0.00 0.00 2.52
5134 5366 6.885735 ATTTCGTGTTTTGACCTTTTTCTG 57.114 33.333 0.00 0.00 0.00 3.02
5135 5367 5.630661 TTCGTGTTTTGACCTTTTTCTGA 57.369 34.783 0.00 0.00 0.00 3.27
5136 5368 5.630661 TCGTGTTTTGACCTTTTTCTGAA 57.369 34.783 0.00 0.00 0.00 3.02
5137 5369 6.015027 TCGTGTTTTGACCTTTTTCTGAAA 57.985 33.333 0.00 0.00 0.00 2.69
5138 5370 5.859648 TCGTGTTTTGACCTTTTTCTGAAAC 59.140 36.000 1.58 0.00 0.00 2.78
5139 5371 5.861787 CGTGTTTTGACCTTTTTCTGAAACT 59.138 36.000 1.58 0.00 0.00 2.66
5140 5372 6.364976 CGTGTTTTGACCTTTTTCTGAAACTT 59.635 34.615 1.58 0.00 0.00 2.66
5141 5373 7.509797 GTGTTTTGACCTTTTTCTGAAACTTG 58.490 34.615 1.58 0.00 0.00 3.16
5142 5374 7.170828 GTGTTTTGACCTTTTTCTGAAACTTGT 59.829 33.333 1.58 0.16 0.00 3.16
5143 5375 7.713073 TGTTTTGACCTTTTTCTGAAACTTGTT 59.287 29.630 1.58 0.00 0.00 2.83
5144 5376 7.883229 TTTGACCTTTTTCTGAAACTTGTTC 57.117 32.000 1.58 0.00 0.00 3.18
5145 5377 5.636837 TGACCTTTTTCTGAAACTTGTTCG 58.363 37.500 1.58 0.00 0.00 3.95
5146 5378 5.413213 TGACCTTTTTCTGAAACTTGTTCGA 59.587 36.000 1.58 0.00 0.00 3.71
5147 5379 5.880341 ACCTTTTTCTGAAACTTGTTCGAG 58.120 37.500 1.58 0.00 0.00 4.04
5148 5380 5.646360 ACCTTTTTCTGAAACTTGTTCGAGA 59.354 36.000 1.58 0.00 0.00 4.04
5149 5381 6.318900 ACCTTTTTCTGAAACTTGTTCGAGAT 59.681 34.615 1.58 0.00 0.00 2.75
5150 5382 6.853362 CCTTTTTCTGAAACTTGTTCGAGATC 59.147 38.462 1.58 0.00 0.00 2.75
5151 5383 7.254932 CCTTTTTCTGAAACTTGTTCGAGATCT 60.255 37.037 1.58 0.00 0.00 2.75
5152 5384 6.530913 TTTCTGAAACTTGTTCGAGATCTG 57.469 37.500 0.00 0.00 0.00 2.90
5153 5385 5.453567 TCTGAAACTTGTTCGAGATCTGA 57.546 39.130 0.00 0.00 0.00 3.27
5154 5386 5.223382 TCTGAAACTTGTTCGAGATCTGAC 58.777 41.667 0.00 0.00 0.00 3.51
5155 5387 4.307432 TGAAACTTGTTCGAGATCTGACC 58.693 43.478 0.00 0.00 0.00 4.02
5156 5388 4.039245 TGAAACTTGTTCGAGATCTGACCT 59.961 41.667 0.00 0.00 0.00 3.85
5157 5389 4.608948 AACTTGTTCGAGATCTGACCTT 57.391 40.909 0.00 0.00 0.00 3.50
5158 5390 5.723672 AACTTGTTCGAGATCTGACCTTA 57.276 39.130 0.00 0.00 0.00 2.69
5159 5391 5.317733 ACTTGTTCGAGATCTGACCTTAG 57.682 43.478 0.00 0.00 0.00 2.18
5160 5392 4.767928 ACTTGTTCGAGATCTGACCTTAGT 59.232 41.667 0.00 0.00 0.00 2.24
5161 5393 5.244178 ACTTGTTCGAGATCTGACCTTAGTT 59.756 40.000 0.00 0.00 0.00 2.24
5162 5394 5.723672 TGTTCGAGATCTGACCTTAGTTT 57.276 39.130 0.00 0.00 0.00 2.66
5163 5395 5.470368 TGTTCGAGATCTGACCTTAGTTTG 58.530 41.667 0.00 0.00 0.00 2.93
5164 5396 5.010719 TGTTCGAGATCTGACCTTAGTTTGT 59.989 40.000 0.00 0.00 0.00 2.83
5165 5397 6.208007 TGTTCGAGATCTGACCTTAGTTTGTA 59.792 38.462 0.00 0.00 0.00 2.41
5166 5398 6.829229 TCGAGATCTGACCTTAGTTTGTAA 57.171 37.500 0.00 0.00 0.00 2.41
5167 5399 7.223260 TCGAGATCTGACCTTAGTTTGTAAA 57.777 36.000 0.00 0.00 0.00 2.01
5168 5400 7.663827 TCGAGATCTGACCTTAGTTTGTAAAA 58.336 34.615 0.00 0.00 0.00 1.52
5169 5401 8.145767 TCGAGATCTGACCTTAGTTTGTAAAAA 58.854 33.333 0.00 0.00 0.00 1.94
5191 5423 8.727100 AAAAATTCAGGATCTTACCCTTTTCT 57.273 30.769 0.00 0.00 0.00 2.52
5192 5424 8.727100 AAAATTCAGGATCTTACCCTTTTCTT 57.273 30.769 0.00 0.00 0.00 2.52
5193 5425 9.822727 AAAATTCAGGATCTTACCCTTTTCTTA 57.177 29.630 0.00 0.00 0.00 2.10
5194 5426 8.809468 AATTCAGGATCTTACCCTTTTCTTAC 57.191 34.615 0.00 0.00 0.00 2.34
5195 5427 7.569599 TTCAGGATCTTACCCTTTTCTTACT 57.430 36.000 0.00 0.00 0.00 2.24
5196 5428 6.947464 TCAGGATCTTACCCTTTTCTTACTG 58.053 40.000 0.00 0.00 0.00 2.74
5197 5429 5.586643 CAGGATCTTACCCTTTTCTTACTGC 59.413 44.000 0.00 0.00 0.00 4.40
5198 5430 4.882427 GGATCTTACCCTTTTCTTACTGCC 59.118 45.833 0.00 0.00 0.00 4.85
5199 5431 4.986054 TCTTACCCTTTTCTTACTGCCA 57.014 40.909 0.00 0.00 0.00 4.92
5200 5432 4.906618 TCTTACCCTTTTCTTACTGCCAG 58.093 43.478 0.00 0.00 0.00 4.85
5201 5433 2.586648 ACCCTTTTCTTACTGCCAGG 57.413 50.000 0.00 0.00 0.00 4.45
5202 5434 1.075536 ACCCTTTTCTTACTGCCAGGG 59.924 52.381 0.00 0.20 45.85 4.45
5203 5435 1.354368 CCCTTTTCTTACTGCCAGGGA 59.646 52.381 0.00 0.00 43.45 4.20
5204 5436 2.437413 CCTTTTCTTACTGCCAGGGAC 58.563 52.381 0.00 0.00 0.00 4.46
5205 5437 2.437413 CTTTTCTTACTGCCAGGGACC 58.563 52.381 0.00 0.00 0.00 4.46
5206 5438 1.742308 TTTCTTACTGCCAGGGACCT 58.258 50.000 0.00 0.00 0.00 3.85
5207 5439 1.276622 TTCTTACTGCCAGGGACCTC 58.723 55.000 0.00 0.00 0.00 3.85
5208 5440 0.970937 TCTTACTGCCAGGGACCTCG 60.971 60.000 0.00 0.00 0.00 4.63
5209 5441 0.970937 CTTACTGCCAGGGACCTCGA 60.971 60.000 0.00 0.00 0.00 4.04
5210 5442 1.255667 TTACTGCCAGGGACCTCGAC 61.256 60.000 0.00 0.00 0.00 4.20
5211 5443 4.135153 CTGCCAGGGACCTCGACG 62.135 72.222 0.00 0.00 0.00 5.12
5236 5468 2.902705 CTGTTATAGCCTACCGCCAA 57.097 50.000 0.00 0.00 38.78 4.52
5237 5469 2.755650 CTGTTATAGCCTACCGCCAAG 58.244 52.381 0.00 0.00 38.78 3.61
5251 5483 2.854522 CCAAGGTTCTTGGCGGTAG 58.145 57.895 12.96 0.00 32.18 3.18
5252 5484 0.676782 CCAAGGTTCTTGGCGGTAGG 60.677 60.000 12.96 0.00 32.18 3.18
5253 5485 0.676782 CAAGGTTCTTGGCGGTAGGG 60.677 60.000 0.05 0.00 0.00 3.53
5254 5486 1.131928 AAGGTTCTTGGCGGTAGGGT 61.132 55.000 0.00 0.00 0.00 4.34
5255 5487 1.131928 AGGTTCTTGGCGGTAGGGTT 61.132 55.000 0.00 0.00 0.00 4.11
5256 5488 0.958876 GGTTCTTGGCGGTAGGGTTG 60.959 60.000 0.00 0.00 0.00 3.77
5257 5489 1.302993 TTCTTGGCGGTAGGGTTGC 60.303 57.895 0.00 0.00 0.00 4.17
5258 5490 2.033448 CTTGGCGGTAGGGTTGCA 59.967 61.111 0.00 0.00 0.00 4.08
5259 5491 2.281900 TTGGCGGTAGGGTTGCAC 60.282 61.111 0.00 0.00 0.00 4.57
5260 5492 4.690719 TGGCGGTAGGGTTGCACG 62.691 66.667 0.00 0.00 0.00 5.34
5261 5493 4.692475 GGCGGTAGGGTTGCACGT 62.692 66.667 0.00 0.00 0.00 4.49
5262 5494 2.667199 GCGGTAGGGTTGCACGTT 60.667 61.111 0.00 0.00 0.00 3.99
5263 5495 2.674084 GCGGTAGGGTTGCACGTTC 61.674 63.158 0.00 0.00 0.00 3.95
5264 5496 1.005394 CGGTAGGGTTGCACGTTCT 60.005 57.895 0.00 0.00 0.00 3.01
5265 5497 0.244450 CGGTAGGGTTGCACGTTCTA 59.756 55.000 0.00 0.00 0.00 2.10
5266 5498 1.134907 CGGTAGGGTTGCACGTTCTAT 60.135 52.381 0.00 0.00 0.00 1.98
5267 5499 2.547826 GGTAGGGTTGCACGTTCTATC 58.452 52.381 0.00 0.00 0.00 2.08
5268 5500 2.093869 GGTAGGGTTGCACGTTCTATCA 60.094 50.000 0.00 0.00 0.00 2.15
5269 5501 2.094762 AGGGTTGCACGTTCTATCAC 57.905 50.000 0.00 0.00 0.00 3.06
5270 5502 1.346395 AGGGTTGCACGTTCTATCACA 59.654 47.619 0.00 0.00 0.00 3.58
5271 5503 2.147958 GGGTTGCACGTTCTATCACAA 58.852 47.619 0.00 0.00 0.00 3.33
5272 5504 2.550606 GGGTTGCACGTTCTATCACAAA 59.449 45.455 0.00 0.00 0.00 2.83
5273 5505 3.190535 GGGTTGCACGTTCTATCACAAAT 59.809 43.478 0.00 0.00 0.00 2.32
5274 5506 4.320935 GGGTTGCACGTTCTATCACAAATT 60.321 41.667 0.00 0.00 0.00 1.82
5275 5507 4.616802 GGTTGCACGTTCTATCACAAATTG 59.383 41.667 0.00 0.00 0.00 2.32
5276 5508 3.820689 TGCACGTTCTATCACAAATTGC 58.179 40.909 0.00 0.00 0.00 3.56
5277 5509 2.840176 GCACGTTCTATCACAAATTGCG 59.160 45.455 0.00 0.00 0.00 4.85
5278 5510 3.416277 CACGTTCTATCACAAATTGCGG 58.584 45.455 0.00 0.00 0.00 5.69
5279 5511 3.071479 ACGTTCTATCACAAATTGCGGT 58.929 40.909 0.00 0.00 0.00 5.68
5280 5512 4.092237 CACGTTCTATCACAAATTGCGGTA 59.908 41.667 0.00 0.00 0.00 4.02
5281 5513 4.328983 ACGTTCTATCACAAATTGCGGTAG 59.671 41.667 0.00 0.00 0.00 3.18
5282 5514 4.260212 CGTTCTATCACAAATTGCGGTAGG 60.260 45.833 1.96 0.00 0.00 3.18
5283 5515 3.804036 TCTATCACAAATTGCGGTAGGG 58.196 45.455 1.96 0.00 0.00 3.53
5284 5516 2.507407 ATCACAAATTGCGGTAGGGT 57.493 45.000 0.00 0.00 0.00 4.34
5285 5517 2.279935 TCACAAATTGCGGTAGGGTT 57.720 45.000 0.00 0.00 0.00 4.11
5286 5518 1.883275 TCACAAATTGCGGTAGGGTTG 59.117 47.619 0.00 0.00 0.00 3.77
5287 5519 0.601057 ACAAATTGCGGTAGGGTTGC 59.399 50.000 0.00 0.00 0.00 4.17
5288 5520 0.600557 CAAATTGCGGTAGGGTTGCA 59.399 50.000 0.00 0.00 36.72 4.08
5289 5521 0.601057 AAATTGCGGTAGGGTTGCAC 59.399 50.000 0.00 0.00 38.55 4.57
5290 5522 1.582610 AATTGCGGTAGGGTTGCACG 61.583 55.000 0.00 0.00 38.55 5.34
5291 5523 2.741486 ATTGCGGTAGGGTTGCACGT 62.741 55.000 0.00 0.00 38.55 4.49
5292 5524 2.097201 TTGCGGTAGGGTTGCACGTA 62.097 55.000 0.00 0.00 38.55 3.57
5293 5525 1.808390 GCGGTAGGGTTGCACGTAG 60.808 63.158 0.00 0.00 0.00 3.51
5294 5526 1.885157 CGGTAGGGTTGCACGTAGA 59.115 57.895 0.00 0.00 0.00 2.59
5295 5527 0.244450 CGGTAGGGTTGCACGTAGAA 59.756 55.000 0.00 0.00 0.00 2.10
5296 5528 1.718396 GGTAGGGTTGCACGTAGAAC 58.282 55.000 0.00 0.00 0.00 3.01
5297 5529 1.001181 GGTAGGGTTGCACGTAGAACA 59.999 52.381 10.17 0.00 0.00 3.18
5298 5530 2.064014 GTAGGGTTGCACGTAGAACAC 58.936 52.381 10.17 7.01 0.00 3.32
5299 5531 0.466543 AGGGTTGCACGTAGAACACA 59.533 50.000 12.30 0.00 0.00 3.72
5300 5532 0.865769 GGGTTGCACGTAGAACACAG 59.134 55.000 10.17 0.00 0.00 3.66
5301 5533 1.578583 GGTTGCACGTAGAACACAGT 58.421 50.000 10.17 0.00 0.00 3.55
5302 5534 1.260561 GGTTGCACGTAGAACACAGTG 59.739 52.381 0.00 0.00 35.86 3.66
5307 5539 3.972706 CACGTAGAACACAGTGCATAC 57.027 47.619 0.00 0.64 0.00 2.39
5308 5540 3.575630 CACGTAGAACACAGTGCATACT 58.424 45.455 0.00 0.00 37.75 2.12
5309 5541 3.608506 CACGTAGAACACAGTGCATACTC 59.391 47.826 0.00 0.00 34.07 2.59
5310 5542 2.846550 CGTAGAACACAGTGCATACTCG 59.153 50.000 0.00 0.00 34.07 4.18
5311 5543 1.714794 AGAACACAGTGCATACTCGC 58.285 50.000 0.00 0.00 34.07 5.03
5312 5544 1.000843 AGAACACAGTGCATACTCGCA 59.999 47.619 0.00 0.00 40.32 5.10
5320 5552 2.979814 TGCATACTCGCACCTATTGT 57.020 45.000 0.00 0.00 36.86 2.71
5321 5553 3.260475 TGCATACTCGCACCTATTGTT 57.740 42.857 0.00 0.00 36.86 2.83
5322 5554 2.935849 TGCATACTCGCACCTATTGTTG 59.064 45.455 0.00 0.00 36.86 3.33
5323 5555 2.287915 GCATACTCGCACCTATTGTTGG 59.712 50.000 0.00 0.00 0.00 3.77
5324 5556 3.792401 CATACTCGCACCTATTGTTGGA 58.208 45.455 0.00 0.00 0.00 3.53
5325 5557 2.094762 ACTCGCACCTATTGTTGGAC 57.905 50.000 0.00 0.00 0.00 4.02
5326 5558 1.346395 ACTCGCACCTATTGTTGGACA 59.654 47.619 0.00 0.00 0.00 4.02
5327 5559 1.732259 CTCGCACCTATTGTTGGACAC 59.268 52.381 0.00 0.00 0.00 3.67
5328 5560 0.802494 CGCACCTATTGTTGGACACC 59.198 55.000 0.00 0.00 0.00 4.16
5329 5561 1.610624 CGCACCTATTGTTGGACACCT 60.611 52.381 0.00 0.00 0.00 4.00
5330 5562 2.514803 GCACCTATTGTTGGACACCTT 58.485 47.619 0.00 0.00 0.00 3.50
5331 5563 2.228822 GCACCTATTGTTGGACACCTTG 59.771 50.000 0.00 0.00 0.00 3.61
5332 5564 2.819608 CACCTATTGTTGGACACCTTGG 59.180 50.000 0.00 0.00 0.00 3.61
5333 5565 1.818674 CCTATTGTTGGACACCTTGGC 59.181 52.381 0.00 0.00 0.00 4.52
5334 5566 1.468520 CTATTGTTGGACACCTTGGCG 59.531 52.381 0.00 0.00 0.00 5.69
5335 5567 1.178534 ATTGTTGGACACCTTGGCGG 61.179 55.000 0.00 0.00 39.35 6.13
5337 5569 1.071814 GTTGGACACCTTGGCGGTA 59.928 57.895 0.00 0.00 46.94 4.02
5338 5570 0.953960 GTTGGACACCTTGGCGGTAG 60.954 60.000 0.00 0.00 46.94 3.18
5339 5571 1.412453 TTGGACACCTTGGCGGTAGT 61.412 55.000 0.00 0.00 46.94 2.73
5340 5572 1.375523 GGACACCTTGGCGGTAGTG 60.376 63.158 0.00 0.00 46.94 2.74
5341 5573 1.370064 GACACCTTGGCGGTAGTGT 59.630 57.895 2.61 2.61 46.94 3.55
5342 5574 0.250166 GACACCTTGGCGGTAGTGTT 60.250 55.000 4.30 0.00 46.94 3.32
5343 5575 1.001181 GACACCTTGGCGGTAGTGTTA 59.999 52.381 4.30 0.00 46.94 2.41
5344 5576 1.270465 ACACCTTGGCGGTAGTGTTAC 60.270 52.381 0.00 0.00 46.94 2.50
5345 5577 1.050204 ACCTTGGCGGTAGTGTTACA 58.950 50.000 0.00 0.00 46.73 2.41
5346 5578 1.270465 ACCTTGGCGGTAGTGTTACAC 60.270 52.381 7.50 7.50 46.73 2.90
5347 5579 1.270412 CCTTGGCGGTAGTGTTACACA 60.270 52.381 18.19 1.00 36.74 3.72
5348 5580 2.614481 CCTTGGCGGTAGTGTTACACAT 60.614 50.000 18.19 5.58 36.74 3.21
5349 5581 2.087501 TGGCGGTAGTGTTACACATG 57.912 50.000 18.19 5.24 36.74 3.21
5350 5582 0.725117 GGCGGTAGTGTTACACATGC 59.275 55.000 18.19 14.01 36.74 4.06
5351 5583 1.674817 GGCGGTAGTGTTACACATGCT 60.675 52.381 18.19 0.00 36.74 3.79
5352 5584 2.417651 GGCGGTAGTGTTACACATGCTA 60.418 50.000 18.19 0.00 36.74 3.49
5353 5585 3.454375 GCGGTAGTGTTACACATGCTAT 58.546 45.455 18.19 0.00 36.74 2.97
5354 5586 3.489785 GCGGTAGTGTTACACATGCTATC 59.510 47.826 18.19 0.76 36.74 2.08
5355 5587 3.729217 CGGTAGTGTTACACATGCTATCG 59.271 47.826 18.19 9.21 36.74 2.92
5356 5588 3.489785 GGTAGTGTTACACATGCTATCGC 59.510 47.826 18.19 0.00 36.74 4.58
5357 5589 2.550978 AGTGTTACACATGCTATCGCC 58.449 47.619 18.19 0.00 36.74 5.54
5358 5590 2.093711 AGTGTTACACATGCTATCGCCA 60.094 45.455 18.19 0.00 36.74 5.69
5359 5591 2.285220 GTGTTACACATGCTATCGCCAG 59.715 50.000 10.96 0.00 34.08 4.85
5360 5592 1.261619 GTTACACATGCTATCGCCAGC 59.738 52.381 0.00 1.52 42.15 4.85
5361 5593 0.249868 TACACATGCTATCGCCAGCC 60.250 55.000 5.74 0.00 41.04 4.85
5362 5594 1.524393 CACATGCTATCGCCAGCCA 60.524 57.895 5.74 0.00 41.04 4.75
5363 5595 1.096967 CACATGCTATCGCCAGCCAA 61.097 55.000 5.74 0.00 41.04 4.52
5364 5596 0.394216 ACATGCTATCGCCAGCCAAA 60.394 50.000 5.74 0.00 41.04 3.28
5365 5597 0.029834 CATGCTATCGCCAGCCAAAC 59.970 55.000 5.74 0.00 41.04 2.93
5366 5598 0.394216 ATGCTATCGCCAGCCAAACA 60.394 50.000 5.74 0.00 41.04 2.83
5367 5599 1.305219 TGCTATCGCCAGCCAAACAC 61.305 55.000 5.74 0.00 41.04 3.32
5368 5600 1.305219 GCTATCGCCAGCCAAACACA 61.305 55.000 0.00 0.00 35.40 3.72
5369 5601 1.382522 CTATCGCCAGCCAAACACAT 58.617 50.000 0.00 0.00 0.00 3.21
5370 5602 1.331756 CTATCGCCAGCCAAACACATC 59.668 52.381 0.00 0.00 0.00 3.06
5371 5603 0.322816 ATCGCCAGCCAAACACATCT 60.323 50.000 0.00 0.00 0.00 2.90
5372 5604 0.537143 TCGCCAGCCAAACACATCTT 60.537 50.000 0.00 0.00 0.00 2.40
5373 5605 0.387622 CGCCAGCCAAACACATCTTG 60.388 55.000 0.00 0.00 0.00 3.02
5374 5606 0.037975 GCCAGCCAAACACATCTTGG 60.038 55.000 0.00 0.00 45.26 3.61
5380 5612 3.837213 CCAAACACATCTTGGCAGTAG 57.163 47.619 0.00 0.00 37.14 2.57
5381 5613 2.489329 CCAAACACATCTTGGCAGTAGG 59.511 50.000 0.00 0.00 37.14 3.18
5382 5614 2.489329 CAAACACATCTTGGCAGTAGGG 59.511 50.000 0.00 0.00 0.00 3.53
5383 5615 1.362224 ACACATCTTGGCAGTAGGGT 58.638 50.000 0.00 0.00 0.00 4.34
5384 5616 1.705186 ACACATCTTGGCAGTAGGGTT 59.295 47.619 0.00 0.00 0.00 4.11
5385 5617 2.086869 CACATCTTGGCAGTAGGGTTG 58.913 52.381 0.00 0.00 0.00 3.77
5386 5618 1.098050 CATCTTGGCAGTAGGGTTGC 58.902 55.000 0.00 0.00 40.80 4.17
5387 5619 0.698238 ATCTTGGCAGTAGGGTTGCA 59.302 50.000 0.00 0.00 43.28 4.08
5388 5620 0.698238 TCTTGGCAGTAGGGTTGCAT 59.302 50.000 0.00 0.00 43.28 3.96
5389 5621 1.912731 TCTTGGCAGTAGGGTTGCATA 59.087 47.619 0.00 0.00 43.28 3.14
5390 5622 2.092968 TCTTGGCAGTAGGGTTGCATAG 60.093 50.000 0.00 0.00 43.28 2.23
5391 5623 0.546122 TGGCAGTAGGGTTGCATAGG 59.454 55.000 0.00 0.00 43.28 2.57
5392 5624 0.819666 GGCAGTAGGGTTGCATAGGC 60.820 60.000 0.00 0.00 43.28 3.93
5393 5625 0.181350 GCAGTAGGGTTGCATAGGCT 59.819 55.000 0.00 0.00 41.17 4.58
5394 5626 1.416401 GCAGTAGGGTTGCATAGGCTA 59.584 52.381 0.00 0.00 41.17 3.93
5395 5627 2.807108 GCAGTAGGGTTGCATAGGCTAC 60.807 54.545 5.37 5.37 43.69 3.58
5408 5640 3.668386 GCTACCGCCAGCTTGTTT 58.332 55.556 0.00 0.00 38.57 2.83
5409 5641 1.210155 GCTACCGCCAGCTTGTTTG 59.790 57.895 0.00 0.00 38.57 2.93
5410 5642 1.875963 CTACCGCCAGCTTGTTTGG 59.124 57.895 0.00 0.00 38.78 3.28
5415 5647 4.073052 CCAGCTTGTTTGGCGGTA 57.927 55.556 0.00 0.00 34.52 4.02
5416 5648 1.875963 CCAGCTTGTTTGGCGGTAG 59.124 57.895 0.00 0.00 34.52 3.18
5417 5649 1.586154 CCAGCTTGTTTGGCGGTAGG 61.586 60.000 0.00 0.00 34.52 3.18
5418 5650 1.303317 AGCTTGTTTGGCGGTAGGG 60.303 57.895 0.00 0.00 34.52 3.53
5419 5651 1.302993 GCTTGTTTGGCGGTAGGGA 60.303 57.895 0.00 0.00 0.00 4.20
5420 5652 0.679960 GCTTGTTTGGCGGTAGGGAT 60.680 55.000 0.00 0.00 0.00 3.85
5421 5653 1.094785 CTTGTTTGGCGGTAGGGATG 58.905 55.000 0.00 0.00 0.00 3.51
5422 5654 0.402504 TTGTTTGGCGGTAGGGATGT 59.597 50.000 0.00 0.00 0.00 3.06
5423 5655 0.035820 TGTTTGGCGGTAGGGATGTC 60.036 55.000 0.00 0.00 0.00 3.06
5424 5656 0.252197 GTTTGGCGGTAGGGATGTCT 59.748 55.000 0.00 0.00 0.00 3.41
5425 5657 0.539986 TTTGGCGGTAGGGATGTCTC 59.460 55.000 0.00 0.00 0.00 3.36
5426 5658 1.335132 TTGGCGGTAGGGATGTCTCC 61.335 60.000 0.00 0.00 41.26 3.71
5427 5659 1.457831 GGCGGTAGGGATGTCTCCT 60.458 63.158 0.00 0.00 41.74 3.69
5428 5660 0.178970 GGCGGTAGGGATGTCTCCTA 60.179 60.000 0.00 0.00 41.74 2.94
5432 5664 0.960286 GTAGGGATGTCTCCTACCGC 59.040 60.000 8.64 0.00 46.75 5.68
5433 5665 0.178970 TAGGGATGTCTCCTACCGCC 60.179 60.000 0.00 0.00 41.74 6.13
5434 5666 1.760875 GGGATGTCTCCTACCGCCA 60.761 63.158 0.00 0.00 41.74 5.69
5435 5667 1.335132 GGGATGTCTCCTACCGCCAA 61.335 60.000 0.00 0.00 41.74 4.52
5436 5668 0.105039 GGATGTCTCCTACCGCCAAG 59.895 60.000 0.00 0.00 38.65 3.61
5437 5669 3.243966 GGATGTCTCCTACCGCCAAGG 62.244 61.905 0.00 0.00 41.55 3.61
5450 5682 4.617875 CAAGGTCCTTGGCGGTAG 57.382 61.111 22.23 0.00 37.77 3.18
5451 5683 1.078426 CAAGGTCCTTGGCGGTAGG 60.078 63.158 22.23 0.00 37.77 3.18
5452 5684 2.967946 AAGGTCCTTGGCGGTAGGC 61.968 63.158 2.38 0.00 44.11 3.93
5453 5685 3.400054 GGTCCTTGGCGGTAGGCT 61.400 66.667 0.00 0.00 44.18 4.58
5454 5686 2.125106 GTCCTTGGCGGTAGGCTG 60.125 66.667 0.00 0.00 44.18 4.85
5455 5687 2.606519 TCCTTGGCGGTAGGCTGT 60.607 61.111 0.00 0.00 44.18 4.40
5456 5688 2.221299 TCCTTGGCGGTAGGCTGTT 61.221 57.895 0.00 0.00 44.18 3.16
5457 5689 0.905809 TCCTTGGCGGTAGGCTGTTA 60.906 55.000 0.00 0.00 44.18 2.41
5458 5690 0.743345 CCTTGGCGGTAGGCTGTTAC 60.743 60.000 0.00 0.00 44.18 2.50
5459 5691 0.036765 CTTGGCGGTAGGCTGTTACA 60.037 55.000 0.00 0.00 44.18 2.41
5460 5692 0.320946 TTGGCGGTAGGCTGTTACAC 60.321 55.000 0.00 0.00 44.18 2.90
5461 5693 1.449070 GGCGGTAGGCTGTTACACC 60.449 63.158 0.00 0.00 42.94 4.16
5462 5694 1.449070 GCGGTAGGCTGTTACACCC 60.449 63.158 0.00 0.00 39.11 4.61
5463 5695 1.896122 GCGGTAGGCTGTTACACCCT 61.896 60.000 4.50 4.50 39.11 4.34
5464 5696 1.477553 CGGTAGGCTGTTACACCCTA 58.522 55.000 2.49 2.49 0.00 3.53
5465 5697 1.135721 CGGTAGGCTGTTACACCCTAC 59.864 57.143 22.28 22.28 46.60 3.18
5466 5698 2.464782 GGTAGGCTGTTACACCCTACT 58.535 52.381 26.59 5.99 46.54 2.57
5467 5699 2.167900 GGTAGGCTGTTACACCCTACTG 59.832 54.545 26.59 0.00 46.54 2.74
5468 5700 0.613777 AGGCTGTTACACCCTACTGC 59.386 55.000 0.00 0.00 38.16 4.40
5469 5701 3.154589 GCTGTTACACCCTACTGCC 57.845 57.895 0.00 0.00 34.38 4.85
5470 5702 0.323629 GCTGTTACACCCTACTGCCA 59.676 55.000 0.00 0.00 34.38 4.92
5471 5703 1.676014 GCTGTTACACCCTACTGCCAG 60.676 57.143 0.00 0.00 34.38 4.85
5472 5704 0.981183 TGTTACACCCTACTGCCAGG 59.019 55.000 0.00 0.00 35.26 4.45
5478 5710 4.737346 CCTACTGCCAGGGATCCT 57.263 61.111 12.58 0.00 31.47 3.24
5490 5722 3.502051 AGGGATCCTGGTGGTAGTAAA 57.498 47.619 12.58 0.00 29.57 2.01
5491 5723 3.810623 AGGGATCCTGGTGGTAGTAAAA 58.189 45.455 12.58 0.00 29.57 1.52
5492 5724 3.780850 AGGGATCCTGGTGGTAGTAAAAG 59.219 47.826 12.58 0.00 29.57 2.27
5493 5725 3.118000 GGGATCCTGGTGGTAGTAAAAGG 60.118 52.174 12.58 0.00 34.23 3.11
5494 5726 3.118000 GGATCCTGGTGGTAGTAAAAGGG 60.118 52.174 3.84 0.00 34.23 3.95
5495 5727 1.631898 TCCTGGTGGTAGTAAAAGGGC 59.368 52.381 0.00 0.00 34.23 5.19
5496 5728 1.340697 CCTGGTGGTAGTAAAAGGGCC 60.341 57.143 0.00 0.00 0.00 5.80
5497 5729 1.353022 CTGGTGGTAGTAAAAGGGCCA 59.647 52.381 6.18 0.00 0.00 5.36
5498 5730 1.353022 TGGTGGTAGTAAAAGGGCCAG 59.647 52.381 6.18 0.00 0.00 4.85
5499 5731 1.631898 GGTGGTAGTAAAAGGGCCAGA 59.368 52.381 6.18 0.00 0.00 3.86
5500 5732 2.241430 GGTGGTAGTAAAAGGGCCAGAT 59.759 50.000 6.18 0.00 0.00 2.90
5501 5733 3.542648 GTGGTAGTAAAAGGGCCAGATC 58.457 50.000 6.18 0.00 0.00 2.75
5502 5734 2.508300 TGGTAGTAAAAGGGCCAGATCC 59.492 50.000 6.18 0.00 0.00 3.36
5503 5735 2.158652 GGTAGTAAAAGGGCCAGATCCC 60.159 54.545 6.18 0.00 46.93 3.85
5510 5742 3.207452 GGGCCAGATCCCGAAATTT 57.793 52.632 4.39 0.00 36.38 1.82
5511 5743 1.485124 GGGCCAGATCCCGAAATTTT 58.515 50.000 4.39 0.00 36.38 1.82
5512 5744 1.831106 GGGCCAGATCCCGAAATTTTT 59.169 47.619 4.39 0.00 36.38 1.94
5513 5745 3.028130 GGGCCAGATCCCGAAATTTTTA 58.972 45.455 4.39 0.00 36.38 1.52
5514 5746 3.181479 GGGCCAGATCCCGAAATTTTTAC 60.181 47.826 4.39 0.00 36.38 2.01
5515 5747 3.488553 GGCCAGATCCCGAAATTTTTACG 60.489 47.826 0.00 0.00 0.00 3.18
5516 5748 3.375922 GCCAGATCCCGAAATTTTTACGA 59.624 43.478 0.00 0.00 0.00 3.43
5517 5749 4.142556 GCCAGATCCCGAAATTTTTACGAA 60.143 41.667 0.00 0.00 0.00 3.85
5518 5750 5.329493 CCAGATCCCGAAATTTTTACGAAC 58.671 41.667 0.00 0.00 0.00 3.95
5519 5751 5.123344 CCAGATCCCGAAATTTTTACGAACT 59.877 40.000 0.00 0.00 0.00 3.01
5520 5752 6.314400 CCAGATCCCGAAATTTTTACGAACTA 59.686 38.462 0.00 0.00 0.00 2.24
5521 5753 7.399523 CAGATCCCGAAATTTTTACGAACTAG 58.600 38.462 0.00 0.00 0.00 2.57
5522 5754 6.537660 AGATCCCGAAATTTTTACGAACTAGG 59.462 38.462 0.00 0.00 0.00 3.02
5523 5755 4.937015 TCCCGAAATTTTTACGAACTAGGG 59.063 41.667 0.00 0.00 35.47 3.53
5524 5756 4.696877 CCCGAAATTTTTACGAACTAGGGT 59.303 41.667 0.00 0.00 0.00 4.34
5525 5757 5.163824 CCCGAAATTTTTACGAACTAGGGTC 60.164 44.000 0.00 0.00 0.00 4.46
5526 5758 5.409214 CCGAAATTTTTACGAACTAGGGTCA 59.591 40.000 0.00 0.00 0.00 4.02
5527 5759 6.401796 CCGAAATTTTTACGAACTAGGGTCAG 60.402 42.308 0.00 0.00 0.00 3.51
5528 5760 6.366877 CGAAATTTTTACGAACTAGGGTCAGA 59.633 38.462 0.00 0.00 0.00 3.27
5529 5761 7.064253 CGAAATTTTTACGAACTAGGGTCAGAT 59.936 37.037 0.00 0.00 0.00 2.90
5530 5762 7.845066 AATTTTTACGAACTAGGGTCAGATC 57.155 36.000 0.00 0.00 0.00 2.75
5531 5763 6.600882 TTTTTACGAACTAGGGTCAGATCT 57.399 37.500 0.00 0.00 0.00 2.75
5532 5764 5.831702 TTTACGAACTAGGGTCAGATCTC 57.168 43.478 0.00 0.00 0.00 2.75
5533 5765 2.290464 ACGAACTAGGGTCAGATCTCG 58.710 52.381 0.00 0.00 0.00 4.04
5534 5766 2.093075 ACGAACTAGGGTCAGATCTCGA 60.093 50.000 0.00 0.00 0.00 4.04
5535 5767 2.943690 CGAACTAGGGTCAGATCTCGAA 59.056 50.000 0.00 0.00 0.00 3.71
5536 5768 3.242804 CGAACTAGGGTCAGATCTCGAAC 60.243 52.174 0.00 0.00 0.00 3.95
5537 5769 3.367646 ACTAGGGTCAGATCTCGAACA 57.632 47.619 10.92 0.00 0.00 3.18
5538 5770 3.698289 ACTAGGGTCAGATCTCGAACAA 58.302 45.455 10.92 0.78 0.00 2.83
5539 5771 3.697045 ACTAGGGTCAGATCTCGAACAAG 59.303 47.826 10.92 9.72 0.00 3.16
5540 5772 2.530701 AGGGTCAGATCTCGAACAAGT 58.469 47.619 10.92 0.00 0.00 3.16
5541 5773 2.900546 AGGGTCAGATCTCGAACAAGTT 59.099 45.455 10.92 0.00 0.00 2.66
5542 5774 3.325135 AGGGTCAGATCTCGAACAAGTTT 59.675 43.478 10.92 0.00 0.00 2.66
5543 5775 3.680458 GGGTCAGATCTCGAACAAGTTTC 59.320 47.826 10.92 0.00 0.00 2.78
5544 5776 4.307432 GGTCAGATCTCGAACAAGTTTCA 58.693 43.478 0.00 0.00 0.00 2.69
5545 5777 4.387256 GGTCAGATCTCGAACAAGTTTCAG 59.613 45.833 0.00 0.00 0.00 3.02
5546 5778 5.223382 GTCAGATCTCGAACAAGTTTCAGA 58.777 41.667 0.00 0.00 0.00 3.27
5547 5779 5.692204 GTCAGATCTCGAACAAGTTTCAGAA 59.308 40.000 0.00 0.00 0.00 3.02
5548 5780 6.201044 GTCAGATCTCGAACAAGTTTCAGAAA 59.799 38.462 0.00 0.00 0.00 2.52
5549 5781 6.761242 TCAGATCTCGAACAAGTTTCAGAAAA 59.239 34.615 0.00 0.00 0.00 2.29
5550 5782 7.042456 TCAGATCTCGAACAAGTTTCAGAAAAG 60.042 37.037 0.00 0.00 0.00 2.27
5551 5783 5.734855 TCTCGAACAAGTTTCAGAAAAGG 57.265 39.130 0.00 0.00 0.00 3.11
5552 5784 4.574828 TCTCGAACAAGTTTCAGAAAAGGG 59.425 41.667 0.00 0.00 0.00 3.95
5553 5785 4.266714 TCGAACAAGTTTCAGAAAAGGGT 58.733 39.130 0.00 0.00 0.00 4.34
5554 5786 4.334481 TCGAACAAGTTTCAGAAAAGGGTC 59.666 41.667 0.00 0.00 0.00 4.46
5555 5787 4.095782 CGAACAAGTTTCAGAAAAGGGTCA 59.904 41.667 0.00 0.00 0.00 4.02
5556 5788 5.392595 CGAACAAGTTTCAGAAAAGGGTCAA 60.393 40.000 0.00 0.00 0.00 3.18
5557 5789 5.993748 ACAAGTTTCAGAAAAGGGTCAAA 57.006 34.783 0.00 0.00 0.00 2.69
5558 5790 6.353404 ACAAGTTTCAGAAAAGGGTCAAAA 57.647 33.333 0.00 0.00 0.00 2.44
5559 5791 6.163476 ACAAGTTTCAGAAAAGGGTCAAAAC 58.837 36.000 0.00 0.00 0.00 2.43
5560 5792 5.993748 AGTTTCAGAAAAGGGTCAAAACA 57.006 34.783 0.00 0.00 32.28 2.83
5561 5793 5.720202 AGTTTCAGAAAAGGGTCAAAACAC 58.280 37.500 0.00 0.00 32.28 3.32
5562 5794 4.364415 TTCAGAAAAGGGTCAAAACACG 57.636 40.909 0.00 0.00 32.44 4.49
5563 5795 3.611970 TCAGAAAAGGGTCAAAACACGA 58.388 40.909 0.00 0.00 32.44 4.35
5564 5796 4.011023 TCAGAAAAGGGTCAAAACACGAA 58.989 39.130 0.00 0.00 32.44 3.85
5565 5797 4.459685 TCAGAAAAGGGTCAAAACACGAAA 59.540 37.500 0.00 0.00 32.44 3.46
5566 5798 5.126384 TCAGAAAAGGGTCAAAACACGAAAT 59.874 36.000 0.00 0.00 32.44 2.17
5567 5799 5.810074 CAGAAAAGGGTCAAAACACGAAATT 59.190 36.000 0.00 0.00 32.44 1.82
5568 5800 6.312672 CAGAAAAGGGTCAAAACACGAAATTT 59.687 34.615 0.00 0.00 32.44 1.82
5569 5801 6.876789 AGAAAAGGGTCAAAACACGAAATTTT 59.123 30.769 0.00 0.00 32.44 1.82
5570 5802 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
5571 5803 3.868661 AGGGTCAAAACACGAAATTTTGC 59.131 39.130 5.27 11.02 43.62 3.68
5572 5804 3.001838 GGGTCAAAACACGAAATTTTGCC 59.998 43.478 5.27 16.17 43.62 4.52
5573 5805 3.001838 GGTCAAAACACGAAATTTTGCCC 59.998 43.478 5.27 11.08 43.62 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1302 1335 1.202915 TCAGCATGCCAAGAAGAACCA 60.203 47.619 15.66 0.00 34.76 3.67
1333 1366 0.110104 AGCCTAAGAGCCATGGATGC 59.890 55.000 18.40 8.76 0.00 3.91
1351 1384 0.179129 GCCGTCATTCCAAATGGCAG 60.179 55.000 5.26 0.00 45.21 4.85
1681 1729 2.036256 CCAGGGAGGCTGGTTTGG 59.964 66.667 0.00 0.00 37.22 3.28
2062 2132 3.308530 GCAATTCCGTCTGAAACAAAGG 58.691 45.455 0.00 0.00 36.33 3.11
2370 2442 9.369672 AGCTATATACCAAAAAGAGTAGCTACT 57.630 33.333 26.35 26.35 41.10 2.57
2371 2443 9.413048 CAGCTATATACCAAAAAGAGTAGCTAC 57.587 37.037 16.43 16.43 40.99 3.58
2438 2632 5.902613 ATGACAACATTTGGACGATTCAT 57.097 34.783 0.00 0.00 32.21 2.57
2439 2633 5.703978 AATGACAACATTTGGACGATTCA 57.296 34.783 0.00 0.00 43.17 2.57
2497 2691 7.604657 AGATAGATTGTCCTTATTCGGTTCT 57.395 36.000 0.00 0.00 0.00 3.01
2915 3113 8.573035 GTCCTAATTGAAACCATTGAGTAACAA 58.427 33.333 0.00 0.00 42.95 2.83
2963 3161 2.543653 GCCATCAAACACACCTTGACAC 60.544 50.000 0.00 0.00 35.70 3.67
2981 3179 1.985473 AGTCAGAAATGCAACAGCCA 58.015 45.000 0.00 0.00 0.00 4.75
3147 3345 2.121948 ACTGATCCTTGCTGCTCCATA 58.878 47.619 0.00 0.00 0.00 2.74
3166 3364 3.855689 ACTGGCTGATATTTGCAACAC 57.144 42.857 0.00 0.00 0.00 3.32
3171 3369 4.787598 CCGATTAACTGGCTGATATTTGC 58.212 43.478 0.00 0.00 0.00 3.68
3185 3383 3.786635 ACTGACAGAGATGCCGATTAAC 58.213 45.455 10.08 0.00 0.00 2.01
3186 3384 4.471904 AACTGACAGAGATGCCGATTAA 57.528 40.909 10.08 0.00 0.00 1.40
3187 3385 5.592104 TTAACTGACAGAGATGCCGATTA 57.408 39.130 10.08 0.00 0.00 1.75
3188 3386 4.471904 TTAACTGACAGAGATGCCGATT 57.528 40.909 10.08 0.00 0.00 3.34
3189 3387 4.626042 GATTAACTGACAGAGATGCCGAT 58.374 43.478 10.08 0.00 0.00 4.18
3190 3388 3.489229 CGATTAACTGACAGAGATGCCGA 60.489 47.826 10.08 0.00 0.00 5.54
3191 3389 2.791560 CGATTAACTGACAGAGATGCCG 59.208 50.000 10.08 1.88 0.00 5.69
3192 3390 2.541762 GCGATTAACTGACAGAGATGCC 59.458 50.000 10.08 0.00 0.00 4.40
3193 3391 3.452474 AGCGATTAACTGACAGAGATGC 58.548 45.455 10.08 5.37 0.00 3.91
3194 3392 5.826586 AGTAGCGATTAACTGACAGAGATG 58.173 41.667 10.08 0.00 0.00 2.90
3195 3393 6.205853 CCTAGTAGCGATTAACTGACAGAGAT 59.794 42.308 10.08 0.00 0.00 2.75
3196 3394 5.527951 CCTAGTAGCGATTAACTGACAGAGA 59.472 44.000 10.08 0.00 0.00 3.10
3197 3395 5.297278 ACCTAGTAGCGATTAACTGACAGAG 59.703 44.000 10.08 0.00 0.00 3.35
3198 3396 5.066117 CACCTAGTAGCGATTAACTGACAGA 59.934 44.000 10.08 0.00 0.00 3.41
3199 3397 5.274718 CACCTAGTAGCGATTAACTGACAG 58.725 45.833 0.00 0.00 0.00 3.51
3200 3398 4.097437 CCACCTAGTAGCGATTAACTGACA 59.903 45.833 0.00 0.00 0.00 3.58
3201 3399 4.499357 CCCACCTAGTAGCGATTAACTGAC 60.499 50.000 0.00 0.00 0.00 3.51
3202 3400 3.635373 CCCACCTAGTAGCGATTAACTGA 59.365 47.826 0.00 0.00 0.00 3.41
3203 3401 3.383825 ACCCACCTAGTAGCGATTAACTG 59.616 47.826 0.00 0.00 0.00 3.16
3204 3402 3.635836 GACCCACCTAGTAGCGATTAACT 59.364 47.826 0.00 0.00 0.00 2.24
3262 3480 4.842380 GTGCTGGGTAGGGATAAATAGGTA 59.158 45.833 0.00 0.00 0.00 3.08
3353 3571 9.307121 CCTGCTACTAAATCTGGAATAATATCG 57.693 37.037 0.00 0.00 0.00 2.92
3409 3634 5.068234 TGTCAATAAGTAACAGAGGACCG 57.932 43.478 0.00 0.00 0.00 4.79
3742 3972 5.121454 CCTACAGAACAGAAAACTCTGATGC 59.879 44.000 9.06 0.00 39.15 3.91
3922 4152 6.959639 ATACTGAAGGAGCAAACTCAAAAA 57.040 33.333 0.00 0.00 45.42 1.94
3970 4200 8.492415 TCATCCCTAGCAAGTAGTTATAACAT 57.508 34.615 17.65 5.73 0.00 2.71
3998 4228 4.168922 TCTATACATTGCGATACCACCG 57.831 45.455 0.00 0.00 0.00 4.94
4271 4501 3.673809 GGTATAGATCGAAACGATGGCAC 59.326 47.826 11.26 4.42 47.00 5.01
4313 4543 3.869272 CGGCTGAATGGTGAGCGC 61.869 66.667 0.00 0.00 35.95 5.92
4324 4554 4.382541 TCAGGGAGAGGCGGCTGA 62.383 66.667 19.63 3.79 0.00 4.26
4438 4668 1.617263 CGGAAGAACCTCTCCCTCTCA 60.617 57.143 0.00 0.00 36.31 3.27
4480 4710 3.497115 TGGCCAGGCAGGTTGACA 61.497 61.111 15.19 0.00 40.61 3.58
4580 4810 6.099701 TGAACTGTATATACCAATCACTGCCT 59.900 38.462 10.38 0.00 0.00 4.75
4624 4856 6.181190 CAAGCATCAAGAGGATCATCCATAT 58.819 40.000 6.42 0.00 39.61 1.78
4658 4890 5.830457 TCTCCGAACAGATCATTGTATCTCT 59.170 40.000 0.00 0.00 33.87 3.10
4659 4891 6.078202 TCTCCGAACAGATCATTGTATCTC 57.922 41.667 0.00 0.00 33.87 2.75
4660 4892 5.010516 CCTCTCCGAACAGATCATTGTATCT 59.989 44.000 0.00 0.00 36.64 1.98
4667 4899 1.418334 CCCCTCTCCGAACAGATCAT 58.582 55.000 0.00 0.00 0.00 2.45
4756 4988 6.643388 ACAAGCAAGAAACTGGAAAAGAATT 58.357 32.000 0.00 0.00 0.00 2.17
4879 5111 4.398319 ACTCCACTTGTTACCCATGAAAG 58.602 43.478 0.00 0.00 0.00 2.62
4929 5161 3.493002 CCAAAATCAGAGGCAAGTGCAAA 60.493 43.478 5.52 0.00 44.36 3.68
4945 5177 7.049754 ACTCAAAAGAACAAAGCATCCAAAAT 58.950 30.769 0.00 0.00 0.00 1.82
4997 5229 4.400961 AGAGCACGCCAAGCCTCC 62.401 66.667 0.00 0.00 0.00 4.30
5052 5284 0.036164 TTTCCAGTGGACATGACCCG 59.964 55.000 12.69 0.52 0.00 5.28
5055 5287 1.541588 GCCTTTTCCAGTGGACATGAC 59.458 52.381 12.69 0.00 0.00 3.06
5105 5337 4.866921 AGGTCAAAACACGAAATTTAGCC 58.133 39.130 0.00 0.00 0.00 3.93
5106 5338 6.822073 AAAGGTCAAAACACGAAATTTAGC 57.178 33.333 0.00 0.00 0.00 3.09
5107 5339 9.083080 AGAAAAAGGTCAAAACACGAAATTTAG 57.917 29.630 0.00 0.00 0.00 1.85
5108 5340 8.865001 CAGAAAAAGGTCAAAACACGAAATTTA 58.135 29.630 0.00 0.00 0.00 1.40
5109 5341 7.600752 TCAGAAAAAGGTCAAAACACGAAATTT 59.399 29.630 0.00 0.00 0.00 1.82
5110 5342 7.093992 TCAGAAAAAGGTCAAAACACGAAATT 58.906 30.769 0.00 0.00 0.00 1.82
5111 5343 6.626302 TCAGAAAAAGGTCAAAACACGAAAT 58.374 32.000 0.00 0.00 0.00 2.17
5112 5344 6.015027 TCAGAAAAAGGTCAAAACACGAAA 57.985 33.333 0.00 0.00 0.00 3.46
5113 5345 5.630661 TCAGAAAAAGGTCAAAACACGAA 57.369 34.783 0.00 0.00 0.00 3.85
5114 5346 5.630661 TTCAGAAAAAGGTCAAAACACGA 57.369 34.783 0.00 0.00 0.00 4.35
5115 5347 5.861787 AGTTTCAGAAAAAGGTCAAAACACG 59.138 36.000 0.00 0.00 32.28 4.49
5116 5348 7.170828 ACAAGTTTCAGAAAAAGGTCAAAACAC 59.829 33.333 0.00 0.00 32.28 3.32
5117 5349 7.213678 ACAAGTTTCAGAAAAAGGTCAAAACA 58.786 30.769 0.00 0.00 32.28 2.83
5118 5350 7.652300 ACAAGTTTCAGAAAAAGGTCAAAAC 57.348 32.000 0.00 0.00 0.00 2.43
5119 5351 7.115663 CGAACAAGTTTCAGAAAAAGGTCAAAA 59.884 33.333 0.00 0.00 0.00 2.44
5120 5352 6.584563 CGAACAAGTTTCAGAAAAAGGTCAAA 59.415 34.615 0.00 0.00 0.00 2.69
5121 5353 6.072397 TCGAACAAGTTTCAGAAAAAGGTCAA 60.072 34.615 0.00 0.00 0.00 3.18
5122 5354 5.413213 TCGAACAAGTTTCAGAAAAAGGTCA 59.587 36.000 0.00 0.00 0.00 4.02
5123 5355 5.875930 TCGAACAAGTTTCAGAAAAAGGTC 58.124 37.500 0.00 0.00 0.00 3.85
5124 5356 5.646360 TCTCGAACAAGTTTCAGAAAAAGGT 59.354 36.000 0.00 0.00 0.00 3.50
5125 5357 6.119144 TCTCGAACAAGTTTCAGAAAAAGG 57.881 37.500 0.00 0.00 0.00 3.11
5126 5358 7.585573 CAGATCTCGAACAAGTTTCAGAAAAAG 59.414 37.037 0.00 0.00 0.00 2.27
5127 5359 7.279981 TCAGATCTCGAACAAGTTTCAGAAAAA 59.720 33.333 0.00 0.00 0.00 1.94
5128 5360 6.761242 TCAGATCTCGAACAAGTTTCAGAAAA 59.239 34.615 0.00 0.00 0.00 2.29
5129 5361 6.201044 GTCAGATCTCGAACAAGTTTCAGAAA 59.799 38.462 0.00 0.00 0.00 2.52
5130 5362 5.692204 GTCAGATCTCGAACAAGTTTCAGAA 59.308 40.000 0.00 0.00 0.00 3.02
5131 5363 5.223382 GTCAGATCTCGAACAAGTTTCAGA 58.777 41.667 0.00 0.00 0.00 3.27
5132 5364 4.387256 GGTCAGATCTCGAACAAGTTTCAG 59.613 45.833 0.00 0.00 0.00 3.02
5133 5365 4.039245 AGGTCAGATCTCGAACAAGTTTCA 59.961 41.667 11.27 0.00 0.00 2.69
5134 5366 4.561105 AGGTCAGATCTCGAACAAGTTTC 58.439 43.478 11.27 0.00 0.00 2.78
5135 5367 4.608948 AGGTCAGATCTCGAACAAGTTT 57.391 40.909 11.27 0.00 0.00 2.66
5136 5368 4.608948 AAGGTCAGATCTCGAACAAGTT 57.391 40.909 11.27 0.00 0.00 2.66
5137 5369 4.767928 ACTAAGGTCAGATCTCGAACAAGT 59.232 41.667 11.27 10.57 0.00 3.16
5138 5370 5.317733 ACTAAGGTCAGATCTCGAACAAG 57.682 43.478 11.27 10.11 0.00 3.16
5139 5371 5.723672 AACTAAGGTCAGATCTCGAACAA 57.276 39.130 11.27 1.22 0.00 2.83
5140 5372 5.010719 ACAAACTAAGGTCAGATCTCGAACA 59.989 40.000 11.27 0.00 0.00 3.18
5141 5373 5.471257 ACAAACTAAGGTCAGATCTCGAAC 58.529 41.667 0.00 0.00 0.00 3.95
5142 5374 5.723672 ACAAACTAAGGTCAGATCTCGAA 57.276 39.130 0.00 0.00 0.00 3.71
5143 5375 6.829229 TTACAAACTAAGGTCAGATCTCGA 57.171 37.500 0.00 0.00 0.00 4.04
5144 5376 7.884816 TTTTACAAACTAAGGTCAGATCTCG 57.115 36.000 0.00 0.00 0.00 4.04
5166 5398 8.727100 AGAAAAGGGTAAGATCCTGAATTTTT 57.273 30.769 0.00 0.00 34.34 1.94
5167 5399 8.727100 AAGAAAAGGGTAAGATCCTGAATTTT 57.273 30.769 0.00 0.00 34.34 1.82
5168 5400 9.244292 GTAAGAAAAGGGTAAGATCCTGAATTT 57.756 33.333 0.00 0.00 34.34 1.82
5169 5401 8.615705 AGTAAGAAAAGGGTAAGATCCTGAATT 58.384 33.333 0.00 0.00 34.34 2.17
5170 5402 8.049721 CAGTAAGAAAAGGGTAAGATCCTGAAT 58.950 37.037 0.00 0.00 34.34 2.57
5171 5403 7.394816 CAGTAAGAAAAGGGTAAGATCCTGAA 58.605 38.462 0.00 0.00 34.34 3.02
5172 5404 6.576442 GCAGTAAGAAAAGGGTAAGATCCTGA 60.576 42.308 0.00 0.00 34.34 3.86
5173 5405 5.586643 GCAGTAAGAAAAGGGTAAGATCCTG 59.413 44.000 0.00 0.00 34.34 3.86
5174 5406 5.339282 GGCAGTAAGAAAAGGGTAAGATCCT 60.339 44.000 0.00 0.00 35.88 3.24
5175 5407 4.882427 GGCAGTAAGAAAAGGGTAAGATCC 59.118 45.833 0.00 0.00 0.00 3.36
5176 5408 5.497474 TGGCAGTAAGAAAAGGGTAAGATC 58.503 41.667 0.00 0.00 0.00 2.75
5177 5409 5.501156 CTGGCAGTAAGAAAAGGGTAAGAT 58.499 41.667 6.28 0.00 0.00 2.40
5178 5410 4.263331 CCTGGCAGTAAGAAAAGGGTAAGA 60.263 45.833 14.43 0.00 0.00 2.10
5179 5411 4.010349 CCTGGCAGTAAGAAAAGGGTAAG 58.990 47.826 14.43 0.00 0.00 2.34
5180 5412 3.245122 CCCTGGCAGTAAGAAAAGGGTAA 60.245 47.826 14.43 0.00 39.68 2.85
5181 5413 2.307686 CCCTGGCAGTAAGAAAAGGGTA 59.692 50.000 14.43 0.00 39.68 3.69
5182 5414 1.075536 CCCTGGCAGTAAGAAAAGGGT 59.924 52.381 14.43 0.00 39.68 4.34
5183 5415 1.354368 TCCCTGGCAGTAAGAAAAGGG 59.646 52.381 14.43 4.98 44.91 3.95
5184 5416 2.437413 GTCCCTGGCAGTAAGAAAAGG 58.563 52.381 14.43 4.78 0.00 3.11
5185 5417 2.040412 AGGTCCCTGGCAGTAAGAAAAG 59.960 50.000 14.43 0.00 0.00 2.27
5186 5418 2.039879 GAGGTCCCTGGCAGTAAGAAAA 59.960 50.000 14.43 0.00 0.00 2.29
5187 5419 1.628846 GAGGTCCCTGGCAGTAAGAAA 59.371 52.381 14.43 0.00 0.00 2.52
5188 5420 1.276622 GAGGTCCCTGGCAGTAAGAA 58.723 55.000 14.43 0.00 0.00 2.52
5189 5421 0.970937 CGAGGTCCCTGGCAGTAAGA 60.971 60.000 14.43 4.37 0.00 2.10
5190 5422 0.970937 TCGAGGTCCCTGGCAGTAAG 60.971 60.000 14.43 1.77 0.00 2.34
5191 5423 1.077805 TCGAGGTCCCTGGCAGTAA 59.922 57.895 14.43 0.00 0.00 2.24
5192 5424 1.681327 GTCGAGGTCCCTGGCAGTA 60.681 63.158 14.43 0.00 0.00 2.74
5193 5425 2.997897 GTCGAGGTCCCTGGCAGT 60.998 66.667 14.43 0.00 0.00 4.40
5194 5426 4.135153 CGTCGAGGTCCCTGGCAG 62.135 72.222 7.75 7.75 0.00 4.85
5204 5436 5.955280 GCTATAACAGCGTACCGTCGAGG 62.955 56.522 0.00 0.00 43.19 4.63
5205 5437 2.901209 CTATAACAGCGTACCGTCGAG 58.099 52.381 0.00 0.00 0.00 4.04
5206 5438 1.003545 GCTATAACAGCGTACCGTCGA 60.004 52.381 0.00 0.00 41.37 4.20
5207 5439 1.392756 GCTATAACAGCGTACCGTCG 58.607 55.000 0.00 0.00 41.37 5.12
5217 5449 2.548067 CCTTGGCGGTAGGCTATAACAG 60.548 54.545 0.00 0.00 44.18 3.16
5218 5450 1.414919 CCTTGGCGGTAGGCTATAACA 59.585 52.381 0.00 0.00 44.18 2.41
5219 5451 1.415289 ACCTTGGCGGTAGGCTATAAC 59.585 52.381 0.00 0.00 46.73 1.89
5220 5452 1.797320 ACCTTGGCGGTAGGCTATAA 58.203 50.000 0.00 0.00 46.73 0.98
5221 5453 3.545003 ACCTTGGCGGTAGGCTATA 57.455 52.632 0.00 0.00 46.73 1.31
5222 5454 4.394102 ACCTTGGCGGTAGGCTAT 57.606 55.556 0.00 0.00 46.73 2.97
5233 5465 0.676782 CCTACCGCCAAGAACCTTGG 60.677 60.000 18.66 18.66 42.37 3.61
5234 5466 0.676782 CCCTACCGCCAAGAACCTTG 60.677 60.000 0.00 0.00 0.00 3.61
5235 5467 1.131928 ACCCTACCGCCAAGAACCTT 61.132 55.000 0.00 0.00 0.00 3.50
5236 5468 1.131928 AACCCTACCGCCAAGAACCT 61.132 55.000 0.00 0.00 0.00 3.50
5237 5469 0.958876 CAACCCTACCGCCAAGAACC 60.959 60.000 0.00 0.00 0.00 3.62
5238 5470 1.583495 GCAACCCTACCGCCAAGAAC 61.583 60.000 0.00 0.00 0.00 3.01
5239 5471 1.302993 GCAACCCTACCGCCAAGAA 60.303 57.895 0.00 0.00 0.00 2.52
5240 5472 2.349755 GCAACCCTACCGCCAAGA 59.650 61.111 0.00 0.00 0.00 3.02
5241 5473 2.033448 TGCAACCCTACCGCCAAG 59.967 61.111 0.00 0.00 0.00 3.61
5242 5474 2.281900 GTGCAACCCTACCGCCAA 60.282 61.111 0.00 0.00 0.00 4.52
5243 5475 4.690719 CGTGCAACCCTACCGCCA 62.691 66.667 0.00 0.00 0.00 5.69
5244 5476 4.692475 ACGTGCAACCCTACCGCC 62.692 66.667 0.00 0.00 0.00 6.13
5245 5477 2.667199 AACGTGCAACCCTACCGC 60.667 61.111 0.00 0.00 0.00 5.68
5246 5478 0.244450 TAGAACGTGCAACCCTACCG 59.756 55.000 0.00 0.00 0.00 4.02
5247 5479 2.093869 TGATAGAACGTGCAACCCTACC 60.094 50.000 0.00 0.00 0.00 3.18
5248 5480 2.928116 GTGATAGAACGTGCAACCCTAC 59.072 50.000 0.00 0.00 0.00 3.18
5249 5481 2.563620 TGTGATAGAACGTGCAACCCTA 59.436 45.455 0.00 0.00 0.00 3.53
5250 5482 1.346395 TGTGATAGAACGTGCAACCCT 59.654 47.619 0.00 0.00 0.00 4.34
5251 5483 1.803334 TGTGATAGAACGTGCAACCC 58.197 50.000 0.00 0.00 0.00 4.11
5252 5484 3.889196 TTTGTGATAGAACGTGCAACC 57.111 42.857 0.00 0.00 0.00 3.77
5253 5485 4.088496 GCAATTTGTGATAGAACGTGCAAC 59.912 41.667 0.00 0.00 0.00 4.17
5254 5486 4.225984 GCAATTTGTGATAGAACGTGCAA 58.774 39.130 0.00 0.00 0.00 4.08
5255 5487 3.666638 CGCAATTTGTGATAGAACGTGCA 60.667 43.478 3.85 0.00 0.00 4.57
5256 5488 2.840176 CGCAATTTGTGATAGAACGTGC 59.160 45.455 3.85 0.00 0.00 5.34
5257 5489 3.120338 ACCGCAATTTGTGATAGAACGTG 60.120 43.478 11.46 0.00 0.00 4.49
5258 5490 3.071479 ACCGCAATTTGTGATAGAACGT 58.929 40.909 11.46 0.00 0.00 3.99
5259 5491 3.740044 ACCGCAATTTGTGATAGAACG 57.260 42.857 11.46 0.00 0.00 3.95
5260 5492 4.035208 CCCTACCGCAATTTGTGATAGAAC 59.965 45.833 12.12 0.00 0.00 3.01
5261 5493 4.196193 CCCTACCGCAATTTGTGATAGAA 58.804 43.478 12.12 0.00 0.00 2.10
5262 5494 3.199071 ACCCTACCGCAATTTGTGATAGA 59.801 43.478 12.12 0.00 0.00 1.98
5263 5495 3.541632 ACCCTACCGCAATTTGTGATAG 58.458 45.455 11.46 7.87 0.00 2.08
5264 5496 3.637911 ACCCTACCGCAATTTGTGATA 57.362 42.857 11.46 0.00 0.00 2.15
5265 5497 2.491693 CAACCCTACCGCAATTTGTGAT 59.508 45.455 11.46 0.00 0.00 3.06
5266 5498 1.883275 CAACCCTACCGCAATTTGTGA 59.117 47.619 11.46 0.00 0.00 3.58
5267 5499 1.668628 GCAACCCTACCGCAATTTGTG 60.669 52.381 2.89 2.89 0.00 3.33
5268 5500 0.601057 GCAACCCTACCGCAATTTGT 59.399 50.000 0.00 0.00 0.00 2.83
5269 5501 0.600557 TGCAACCCTACCGCAATTTG 59.399 50.000 0.00 0.00 31.46 2.32
5270 5502 0.601057 GTGCAACCCTACCGCAATTT 59.399 50.000 0.00 0.00 37.41 1.82
5271 5503 1.582610 CGTGCAACCCTACCGCAATT 61.583 55.000 0.00 0.00 37.41 2.32
5272 5504 2.038269 CGTGCAACCCTACCGCAAT 61.038 57.895 0.00 0.00 37.41 3.56
5273 5505 2.097201 TACGTGCAACCCTACCGCAA 62.097 55.000 0.00 0.00 37.41 4.85
5274 5506 2.495366 CTACGTGCAACCCTACCGCA 62.495 60.000 0.00 0.00 0.00 5.69
5275 5507 1.808390 CTACGTGCAACCCTACCGC 60.808 63.158 0.00 0.00 0.00 5.68
5276 5508 0.244450 TTCTACGTGCAACCCTACCG 59.756 55.000 0.00 0.00 0.00 4.02
5277 5509 1.001181 TGTTCTACGTGCAACCCTACC 59.999 52.381 0.00 0.00 0.00 3.18
5278 5510 2.064014 GTGTTCTACGTGCAACCCTAC 58.936 52.381 0.00 0.00 0.00 3.18
5279 5511 1.687660 TGTGTTCTACGTGCAACCCTA 59.312 47.619 0.00 0.00 0.00 3.53
5280 5512 0.466543 TGTGTTCTACGTGCAACCCT 59.533 50.000 0.00 0.00 0.00 4.34
5281 5513 0.865769 CTGTGTTCTACGTGCAACCC 59.134 55.000 0.00 0.00 0.00 4.11
5282 5514 1.260561 CACTGTGTTCTACGTGCAACC 59.739 52.381 0.00 0.00 31.05 3.77
5283 5515 2.645628 CACTGTGTTCTACGTGCAAC 57.354 50.000 0.00 0.94 31.05 4.17
5287 5519 3.575630 AGTATGCACTGTGTTCTACGTG 58.424 45.455 9.86 0.00 37.09 4.49
5288 5520 3.669824 CGAGTATGCACTGTGTTCTACGT 60.670 47.826 9.86 0.00 34.21 3.57
5289 5521 2.846550 CGAGTATGCACTGTGTTCTACG 59.153 50.000 9.86 5.54 34.21 3.51
5290 5522 2.599082 GCGAGTATGCACTGTGTTCTAC 59.401 50.000 9.86 8.62 34.21 2.59
5291 5523 2.230266 TGCGAGTATGCACTGTGTTCTA 59.770 45.455 9.86 0.00 40.62 2.10
5292 5524 1.000843 TGCGAGTATGCACTGTGTTCT 59.999 47.619 9.86 3.18 40.62 3.01
5293 5525 1.428448 TGCGAGTATGCACTGTGTTC 58.572 50.000 9.86 0.00 40.62 3.18
5294 5526 3.605013 TGCGAGTATGCACTGTGTT 57.395 47.368 9.86 0.29 40.62 3.32
5301 5533 2.935849 CAACAATAGGTGCGAGTATGCA 59.064 45.455 0.00 0.00 43.95 3.96
5302 5534 2.287915 CCAACAATAGGTGCGAGTATGC 59.712 50.000 0.00 0.00 0.00 3.14
5303 5535 3.555956 GTCCAACAATAGGTGCGAGTATG 59.444 47.826 0.00 0.00 0.00 2.39
5304 5536 3.196901 TGTCCAACAATAGGTGCGAGTAT 59.803 43.478 0.00 0.00 0.00 2.12
5305 5537 2.563620 TGTCCAACAATAGGTGCGAGTA 59.436 45.455 0.00 0.00 0.00 2.59
5306 5538 1.346395 TGTCCAACAATAGGTGCGAGT 59.654 47.619 0.00 0.00 0.00 4.18
5307 5539 1.732259 GTGTCCAACAATAGGTGCGAG 59.268 52.381 0.00 0.00 0.00 5.03
5308 5540 1.609580 GGTGTCCAACAATAGGTGCGA 60.610 52.381 0.00 0.00 0.00 5.10
5309 5541 0.802494 GGTGTCCAACAATAGGTGCG 59.198 55.000 0.00 0.00 0.00 5.34
5310 5542 2.200373 AGGTGTCCAACAATAGGTGC 57.800 50.000 0.00 0.00 0.00 5.01
5311 5543 2.819608 CCAAGGTGTCCAACAATAGGTG 59.180 50.000 0.00 0.00 0.00 4.00
5312 5544 2.817839 GCCAAGGTGTCCAACAATAGGT 60.818 50.000 0.00 0.00 0.00 3.08
5313 5545 1.818674 GCCAAGGTGTCCAACAATAGG 59.181 52.381 0.00 0.00 0.00 2.57
5314 5546 1.468520 CGCCAAGGTGTCCAACAATAG 59.531 52.381 0.00 0.00 0.00 1.73
5315 5547 1.529226 CGCCAAGGTGTCCAACAATA 58.471 50.000 0.00 0.00 0.00 1.90
5316 5548 1.178534 CCGCCAAGGTGTCCAACAAT 61.179 55.000 0.00 0.00 34.51 2.71
5317 5549 1.826054 CCGCCAAGGTGTCCAACAA 60.826 57.895 0.00 0.00 34.51 2.83
5318 5550 2.203280 CCGCCAAGGTGTCCAACA 60.203 61.111 0.00 0.00 34.51 3.33
5324 5556 5.910661 GTGTAACACTACCGCCAAGGTGT 62.911 52.174 0.00 0.00 46.39 4.16
5325 5557 3.438475 GTGTAACACTACCGCCAAGGTG 61.438 54.545 0.00 0.00 46.39 4.00
5327 5559 1.270412 TGTGTAACACTACCGCCAAGG 60.270 52.381 0.00 0.00 45.67 3.61
5328 5560 2.157834 TGTGTAACACTACCGCCAAG 57.842 50.000 0.00 0.00 45.67 3.61
5350 5582 1.331756 GATGTGTTTGGCTGGCGATAG 59.668 52.381 0.00 0.00 0.00 2.08
5351 5583 1.065491 AGATGTGTTTGGCTGGCGATA 60.065 47.619 0.00 0.00 0.00 2.92
5352 5584 0.322816 AGATGTGTTTGGCTGGCGAT 60.323 50.000 0.00 0.00 0.00 4.58
5353 5585 0.537143 AAGATGTGTTTGGCTGGCGA 60.537 50.000 0.00 0.00 0.00 5.54
5354 5586 0.387622 CAAGATGTGTTTGGCTGGCG 60.388 55.000 0.00 0.00 0.00 5.69
5355 5587 0.037975 CCAAGATGTGTTTGGCTGGC 60.038 55.000 0.00 0.00 38.73 4.85
5360 5592 2.489329 CCTACTGCCAAGATGTGTTTGG 59.511 50.000 0.00 0.00 46.28 3.28
5361 5593 2.489329 CCCTACTGCCAAGATGTGTTTG 59.511 50.000 0.00 0.00 0.00 2.93
5362 5594 2.108250 ACCCTACTGCCAAGATGTGTTT 59.892 45.455 0.00 0.00 0.00 2.83
5363 5595 1.705186 ACCCTACTGCCAAGATGTGTT 59.295 47.619 0.00 0.00 0.00 3.32
5364 5596 1.362224 ACCCTACTGCCAAGATGTGT 58.638 50.000 0.00 0.00 0.00 3.72
5365 5597 2.086869 CAACCCTACTGCCAAGATGTG 58.913 52.381 0.00 0.00 0.00 3.21
5366 5598 1.614317 GCAACCCTACTGCCAAGATGT 60.614 52.381 0.00 0.00 33.51 3.06
5367 5599 1.098050 GCAACCCTACTGCCAAGATG 58.902 55.000 0.00 0.00 33.51 2.90
5368 5600 0.698238 TGCAACCCTACTGCCAAGAT 59.302 50.000 0.00 0.00 39.13 2.40
5369 5601 0.698238 ATGCAACCCTACTGCCAAGA 59.302 50.000 0.00 0.00 39.13 3.02
5370 5602 2.292267 CTATGCAACCCTACTGCCAAG 58.708 52.381 0.00 0.00 39.13 3.61
5371 5603 1.064758 CCTATGCAACCCTACTGCCAA 60.065 52.381 0.00 0.00 39.13 4.52
5372 5604 0.546122 CCTATGCAACCCTACTGCCA 59.454 55.000 0.00 0.00 39.13 4.92
5373 5605 0.819666 GCCTATGCAACCCTACTGCC 60.820 60.000 0.00 0.00 39.13 4.85
5374 5606 0.181350 AGCCTATGCAACCCTACTGC 59.819 55.000 0.00 0.00 41.13 4.40
5375 5607 2.224305 GGTAGCCTATGCAACCCTACTG 60.224 54.545 13.36 0.00 41.13 2.74
5376 5608 2.047830 GGTAGCCTATGCAACCCTACT 58.952 52.381 13.36 1.45 41.13 2.57
5377 5609 1.270147 CGGTAGCCTATGCAACCCTAC 60.270 57.143 0.00 0.00 41.13 3.18
5378 5610 1.045407 CGGTAGCCTATGCAACCCTA 58.955 55.000 0.00 0.00 41.13 3.53
5379 5611 1.830145 CGGTAGCCTATGCAACCCT 59.170 57.895 0.00 0.00 41.13 4.34
5380 5612 1.892391 GCGGTAGCCTATGCAACCC 60.892 63.158 0.00 0.00 41.13 4.11
5381 5613 3.732470 GCGGTAGCCTATGCAACC 58.268 61.111 0.00 0.00 41.13 3.77
5391 5623 1.210155 CAAACAAGCTGGCGGTAGC 59.790 57.895 0.00 0.00 44.01 3.58
5392 5624 1.875963 CCAAACAAGCTGGCGGTAG 59.124 57.895 0.00 0.00 0.00 3.18
5393 5625 4.073052 CCAAACAAGCTGGCGGTA 57.927 55.556 0.00 0.00 0.00 4.02
5398 5630 1.586154 CCTACCGCCAAACAAGCTGG 61.586 60.000 0.00 0.00 36.99 4.85
5399 5631 1.586154 CCCTACCGCCAAACAAGCTG 61.586 60.000 0.00 0.00 0.00 4.24
5400 5632 1.303317 CCCTACCGCCAAACAAGCT 60.303 57.895 0.00 0.00 0.00 3.74
5401 5633 0.679960 ATCCCTACCGCCAAACAAGC 60.680 55.000 0.00 0.00 0.00 4.01
5402 5634 1.094785 CATCCCTACCGCCAAACAAG 58.905 55.000 0.00 0.00 0.00 3.16
5403 5635 0.402504 ACATCCCTACCGCCAAACAA 59.597 50.000 0.00 0.00 0.00 2.83
5404 5636 0.035820 GACATCCCTACCGCCAAACA 60.036 55.000 0.00 0.00 0.00 2.83
5405 5637 0.252197 AGACATCCCTACCGCCAAAC 59.748 55.000 0.00 0.00 0.00 2.93
5406 5638 0.539986 GAGACATCCCTACCGCCAAA 59.460 55.000 0.00 0.00 0.00 3.28
5407 5639 1.335132 GGAGACATCCCTACCGCCAA 61.335 60.000 0.00 0.00 40.03 4.52
5408 5640 1.760875 GGAGACATCCCTACCGCCA 60.761 63.158 0.00 0.00 40.03 5.69
5409 5641 3.139565 GGAGACATCCCTACCGCC 58.860 66.667 0.00 0.00 40.03 6.13
5418 5650 0.105039 CCTTGGCGGTAGGAGACATC 59.895 60.000 0.00 0.00 34.56 3.06
5419 5651 0.617820 ACCTTGGCGGTAGGAGACAT 60.618 55.000 7.07 0.00 46.73 3.06
5420 5652 1.229082 ACCTTGGCGGTAGGAGACA 60.229 57.895 7.07 0.00 46.73 3.41
5421 5653 3.709567 ACCTTGGCGGTAGGAGAC 58.290 61.111 7.07 0.00 46.73 3.36
5433 5665 1.078426 CCTACCGCCAAGGACCTTG 60.078 63.158 25.05 25.05 45.00 3.61
5434 5666 2.967946 GCCTACCGCCAAGGACCTT 61.968 63.158 0.00 0.00 45.00 3.50
5435 5667 3.400054 GCCTACCGCCAAGGACCT 61.400 66.667 0.00 0.00 45.00 3.85
5436 5668 3.400054 AGCCTACCGCCAAGGACC 61.400 66.667 0.54 0.00 45.00 4.46
5437 5669 2.125106 CAGCCTACCGCCAAGGAC 60.125 66.667 0.54 0.00 45.00 3.85
5438 5670 0.905809 TAACAGCCTACCGCCAAGGA 60.906 55.000 0.54 0.00 45.00 3.36
5440 5672 0.036765 TGTAACAGCCTACCGCCAAG 60.037 55.000 0.00 0.00 38.78 3.61
5441 5673 0.320946 GTGTAACAGCCTACCGCCAA 60.321 55.000 0.00 0.00 38.78 4.52
5442 5674 1.294138 GTGTAACAGCCTACCGCCA 59.706 57.895 0.00 0.00 38.78 5.69
5443 5675 1.449070 GGTGTAACAGCCTACCGCC 60.449 63.158 0.00 0.00 39.98 6.13
5444 5676 4.196965 GGTGTAACAGCCTACCGC 57.803 61.111 0.00 0.00 39.98 5.68
5451 5683 0.323629 TGGCAGTAGGGTGTAACAGC 59.676 55.000 0.00 0.00 39.98 4.40
5452 5684 1.066143 CCTGGCAGTAGGGTGTAACAG 60.066 57.143 14.43 0.00 39.98 3.16
5453 5685 0.981183 CCTGGCAGTAGGGTGTAACA 59.019 55.000 14.43 0.00 39.98 2.41
5454 5686 3.855159 CCTGGCAGTAGGGTGTAAC 57.145 57.895 14.43 0.00 34.06 2.50
5461 5693 4.737346 AGGATCCCTGGCAGTAGG 57.263 61.111 14.43 8.65 37.59 3.18
5470 5702 3.502051 TTTACTACCACCAGGATCCCT 57.498 47.619 8.55 0.00 38.69 4.20
5471 5703 3.118000 CCTTTTACTACCACCAGGATCCC 60.118 52.174 8.55 0.00 38.69 3.85
5472 5704 3.118000 CCCTTTTACTACCACCAGGATCC 60.118 52.174 2.48 2.48 38.69 3.36
5473 5705 3.684697 GCCCTTTTACTACCACCAGGATC 60.685 52.174 0.00 0.00 38.69 3.36
5474 5706 2.241430 GCCCTTTTACTACCACCAGGAT 59.759 50.000 0.00 0.00 38.69 3.24
5475 5707 1.631898 GCCCTTTTACTACCACCAGGA 59.368 52.381 0.00 0.00 38.69 3.86
5476 5708 1.340697 GGCCCTTTTACTACCACCAGG 60.341 57.143 0.00 0.00 42.21 4.45
5477 5709 1.353022 TGGCCCTTTTACTACCACCAG 59.647 52.381 0.00 0.00 0.00 4.00
5478 5710 1.353022 CTGGCCCTTTTACTACCACCA 59.647 52.381 0.00 0.00 0.00 4.17
5479 5711 1.631898 TCTGGCCCTTTTACTACCACC 59.368 52.381 0.00 0.00 0.00 4.61
5480 5712 3.542648 GATCTGGCCCTTTTACTACCAC 58.457 50.000 0.00 0.00 0.00 4.16
5481 5713 2.508300 GGATCTGGCCCTTTTACTACCA 59.492 50.000 0.00 0.00 0.00 3.25
5482 5714 2.158652 GGGATCTGGCCCTTTTACTACC 60.159 54.545 0.00 0.00 45.12 3.18
5483 5715 2.484947 CGGGATCTGGCCCTTTTACTAC 60.485 54.545 0.00 0.00 46.44 2.73
5484 5716 1.766496 CGGGATCTGGCCCTTTTACTA 59.234 52.381 0.00 0.00 46.44 1.82
5485 5717 0.546598 CGGGATCTGGCCCTTTTACT 59.453 55.000 0.00 0.00 46.44 2.24
5486 5718 0.544697 TCGGGATCTGGCCCTTTTAC 59.455 55.000 0.00 0.00 46.44 2.01
5487 5719 1.291109 TTCGGGATCTGGCCCTTTTA 58.709 50.000 0.00 0.00 46.44 1.52
5488 5720 0.407918 TTTCGGGATCTGGCCCTTTT 59.592 50.000 0.00 0.00 46.44 2.27
5489 5721 0.631212 ATTTCGGGATCTGGCCCTTT 59.369 50.000 0.00 0.00 46.44 3.11
5490 5722 0.631212 AATTTCGGGATCTGGCCCTT 59.369 50.000 0.00 0.00 46.44 3.95
5491 5723 0.631212 AAATTTCGGGATCTGGCCCT 59.369 50.000 0.00 0.00 46.44 5.19
5492 5724 1.485124 AAAATTTCGGGATCTGGCCC 58.515 50.000 0.00 0.00 45.10 5.80
5493 5725 3.488553 CGTAAAAATTTCGGGATCTGGCC 60.489 47.826 0.00 0.00 0.00 5.36
5494 5726 3.375922 TCGTAAAAATTTCGGGATCTGGC 59.624 43.478 0.00 0.00 0.00 4.85
5495 5727 5.123344 AGTTCGTAAAAATTTCGGGATCTGG 59.877 40.000 0.00 0.00 0.00 3.86
5496 5728 6.178239 AGTTCGTAAAAATTTCGGGATCTG 57.822 37.500 0.00 0.00 0.00 2.90
5497 5729 6.537660 CCTAGTTCGTAAAAATTTCGGGATCT 59.462 38.462 0.00 0.00 0.00 2.75
5498 5730 6.238293 CCCTAGTTCGTAAAAATTTCGGGATC 60.238 42.308 0.00 0.00 0.00 3.36
5499 5731 5.587443 CCCTAGTTCGTAAAAATTTCGGGAT 59.413 40.000 0.00 0.00 0.00 3.85
5500 5732 4.937015 CCCTAGTTCGTAAAAATTTCGGGA 59.063 41.667 0.00 0.00 0.00 5.14
5501 5733 4.696877 ACCCTAGTTCGTAAAAATTTCGGG 59.303 41.667 0.00 0.00 0.00 5.14
5502 5734 5.409214 TGACCCTAGTTCGTAAAAATTTCGG 59.591 40.000 0.00 0.00 0.00 4.30
5503 5735 6.366877 TCTGACCCTAGTTCGTAAAAATTTCG 59.633 38.462 0.00 0.00 0.00 3.46
5504 5736 7.662604 TCTGACCCTAGTTCGTAAAAATTTC 57.337 36.000 0.00 0.00 0.00 2.17
5505 5737 8.101419 AGATCTGACCCTAGTTCGTAAAAATTT 58.899 33.333 0.00 0.00 0.00 1.82
5506 5738 7.621796 AGATCTGACCCTAGTTCGTAAAAATT 58.378 34.615 0.00 0.00 0.00 1.82
5507 5739 7.184067 AGATCTGACCCTAGTTCGTAAAAAT 57.816 36.000 0.00 0.00 0.00 1.82
5508 5740 6.600882 AGATCTGACCCTAGTTCGTAAAAA 57.399 37.500 0.00 0.00 0.00 1.94
5509 5741 5.163683 CGAGATCTGACCCTAGTTCGTAAAA 60.164 44.000 0.00 0.00 0.00 1.52
5510 5742 4.334759 CGAGATCTGACCCTAGTTCGTAAA 59.665 45.833 0.00 0.00 0.00 2.01
5511 5743 3.875727 CGAGATCTGACCCTAGTTCGTAA 59.124 47.826 0.00 0.00 0.00 3.18
5512 5744 3.133542 TCGAGATCTGACCCTAGTTCGTA 59.866 47.826 0.00 0.00 0.00 3.43
5513 5745 2.093075 TCGAGATCTGACCCTAGTTCGT 60.093 50.000 0.00 0.00 0.00 3.85
5514 5746 2.562635 TCGAGATCTGACCCTAGTTCG 58.437 52.381 0.00 0.00 0.00 3.95
5515 5747 3.695060 TGTTCGAGATCTGACCCTAGTTC 59.305 47.826 0.00 0.00 0.00 3.01
5516 5748 3.698289 TGTTCGAGATCTGACCCTAGTT 58.302 45.455 0.00 0.00 0.00 2.24
5517 5749 3.367646 TGTTCGAGATCTGACCCTAGT 57.632 47.619 0.00 0.00 0.00 2.57
5518 5750 3.697045 ACTTGTTCGAGATCTGACCCTAG 59.303 47.826 0.00 1.55 0.00 3.02
5519 5751 3.698289 ACTTGTTCGAGATCTGACCCTA 58.302 45.455 0.00 0.00 0.00 3.53
5520 5752 2.530701 ACTTGTTCGAGATCTGACCCT 58.469 47.619 0.00 0.00 0.00 4.34
5521 5753 3.320673 AACTTGTTCGAGATCTGACCC 57.679 47.619 0.00 0.00 0.00 4.46
5522 5754 4.307432 TGAAACTTGTTCGAGATCTGACC 58.693 43.478 0.00 0.00 0.00 4.02
5523 5755 5.223382 TCTGAAACTTGTTCGAGATCTGAC 58.777 41.667 0.00 0.00 0.00 3.51
5524 5756 5.453567 TCTGAAACTTGTTCGAGATCTGA 57.546 39.130 0.00 0.00 0.00 3.27
5525 5757 6.530913 TTTCTGAAACTTGTTCGAGATCTG 57.469 37.500 0.00 0.00 0.00 2.90
5526 5758 6.203723 CCTTTTCTGAAACTTGTTCGAGATCT 59.796 38.462 1.58 0.00 0.00 2.75
5527 5759 6.366630 CCTTTTCTGAAACTTGTTCGAGATC 58.633 40.000 1.58 0.00 0.00 2.75
5528 5760 5.239525 CCCTTTTCTGAAACTTGTTCGAGAT 59.760 40.000 1.58 0.00 0.00 2.75
5529 5761 4.574828 CCCTTTTCTGAAACTTGTTCGAGA 59.425 41.667 1.58 0.00 0.00 4.04
5530 5762 4.335594 ACCCTTTTCTGAAACTTGTTCGAG 59.664 41.667 1.58 0.00 0.00 4.04
5531 5763 4.266714 ACCCTTTTCTGAAACTTGTTCGA 58.733 39.130 1.58 0.00 0.00 3.71
5532 5764 4.095782 TGACCCTTTTCTGAAACTTGTTCG 59.904 41.667 1.58 0.00 0.00 3.95
5533 5765 5.576447 TGACCCTTTTCTGAAACTTGTTC 57.424 39.130 1.58 0.00 0.00 3.18
5534 5766 5.993748 TTGACCCTTTTCTGAAACTTGTT 57.006 34.783 1.58 0.00 0.00 2.83
5535 5767 5.993748 TTTGACCCTTTTCTGAAACTTGT 57.006 34.783 1.58 0.16 0.00 3.16
5536 5768 6.090763 GTGTTTTGACCCTTTTCTGAAACTTG 59.909 38.462 1.58 0.00 0.00 3.16
5537 5769 6.163476 GTGTTTTGACCCTTTTCTGAAACTT 58.837 36.000 1.58 0.00 0.00 2.66
5538 5770 5.621329 CGTGTTTTGACCCTTTTCTGAAACT 60.621 40.000 1.58 0.00 0.00 2.66
5539 5771 4.561213 CGTGTTTTGACCCTTTTCTGAAAC 59.439 41.667 1.58 0.00 0.00 2.78
5540 5772 4.459685 TCGTGTTTTGACCCTTTTCTGAAA 59.540 37.500 0.00 0.00 0.00 2.69
5541 5773 4.011023 TCGTGTTTTGACCCTTTTCTGAA 58.989 39.130 0.00 0.00 0.00 3.02
5542 5774 3.611970 TCGTGTTTTGACCCTTTTCTGA 58.388 40.909 0.00 0.00 0.00 3.27
5543 5775 4.364415 TTCGTGTTTTGACCCTTTTCTG 57.636 40.909 0.00 0.00 0.00 3.02
5544 5776 5.592104 ATTTCGTGTTTTGACCCTTTTCT 57.408 34.783 0.00 0.00 0.00 2.52
5545 5777 6.656314 AAATTTCGTGTTTTGACCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
5546 5778 6.621812 GCAAAATTTCGTGTTTTGACCCTTTT 60.622 34.615 19.19 0.00 45.02 2.27
5547 5779 5.163804 GCAAAATTTCGTGTTTTGACCCTTT 60.164 36.000 19.19 0.00 45.02 3.11
5548 5780 4.331443 GCAAAATTTCGTGTTTTGACCCTT 59.669 37.500 19.19 0.00 45.02 3.95
5549 5781 3.868661 GCAAAATTTCGTGTTTTGACCCT 59.131 39.130 19.19 0.00 45.02 4.34
5550 5782 3.001838 GGCAAAATTTCGTGTTTTGACCC 59.998 43.478 19.19 11.78 44.81 4.46
5551 5783 4.190304 GGCAAAATTTCGTGTTTTGACC 57.810 40.909 19.19 16.15 44.81 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.