Multiple sequence alignment - TraesCS7D01G319000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G319000 chr7D 100.000 6163 0 0 1 6163 407843942 407850104 0.000000e+00 11382.0
1 TraesCS7D01G319000 chr7D 87.258 361 36 9 1427 1784 497967596 497967243 2.680000e-108 403.0
2 TraesCS7D01G319000 chr7A 95.411 3683 115 26 2434 6087 466243870 466247527 0.000000e+00 5816.0
3 TraesCS7D01G319000 chr7A 93.394 1983 79 13 474 2450 466241918 466243854 0.000000e+00 2889.0
4 TraesCS7D01G319000 chr7A 83.286 353 41 15 1436 1784 32763902 32764240 6.000000e-80 309.0
5 TraesCS7D01G319000 chr7A 98.507 67 1 0 6097 6163 466247573 466247639 1.090000e-22 119.0
6 TraesCS7D01G319000 chr7B 95.458 3545 105 25 2532 6048 419032264 419035780 0.000000e+00 5603.0
7 TraesCS7D01G319000 chr7B 92.966 1777 101 19 766 2534 419030435 419032195 0.000000e+00 2567.0
8 TraesCS7D01G319000 chr7B 79.310 232 31 8 115 338 742584321 742584099 4.980000e-31 147.0
9 TraesCS7D01G319000 chr7B 95.522 67 3 0 6097 6163 419035880 419035946 2.350000e-19 108.0
10 TraesCS7D01G319000 chr6A 92.974 427 24 5 4961 5383 265993685 265993261 8.780000e-173 617.0
11 TraesCS7D01G319000 chr6A 87.273 330 33 6 2587 2910 265994442 265994116 9.760000e-98 368.0
12 TraesCS7D01G319000 chr6A 89.447 199 16 2 4513 4706 265994119 265993921 4.770000e-61 246.0
13 TraesCS7D01G319000 chr6A 93.204 103 7 0 4854 4956 265993879 265993777 1.070000e-32 152.0
14 TraesCS7D01G319000 chr2D 82.865 356 49 10 1427 1779 524329681 524330027 6.000000e-80 309.0
15 TraesCS7D01G319000 chr2A 82.768 354 52 7 1427 1779 669882525 669882870 2.160000e-79 307.0
16 TraesCS7D01G319000 chr2A 80.966 352 54 9 1430 1779 600903149 600903489 3.660000e-67 267.0
17 TraesCS7D01G319000 chr5A 80.899 356 62 5 1428 1783 413228608 413228259 6.090000e-70 276.0
18 TraesCS7D01G319000 chr5A 77.083 336 39 21 31 341 438856237 438856559 6.390000e-35 159.0
19 TraesCS7D01G319000 chr6B 83.721 301 37 9 1486 1783 578097813 578098104 2.190000e-69 274.0
20 TraesCS7D01G319000 chr2B 77.679 336 37 21 31 341 392866636 392866958 2.950000e-38 171.0
21 TraesCS7D01G319000 chr5B 100.000 31 0 0 1 31 446806096 446806066 2.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G319000 chr7D 407843942 407850104 6162 False 11382.000000 11382 100.000000 1 6163 1 chr7D.!!$F1 6162
1 TraesCS7D01G319000 chr7A 466241918 466247639 5721 False 2941.333333 5816 95.770667 474 6163 3 chr7A.!!$F2 5689
2 TraesCS7D01G319000 chr7B 419030435 419035946 5511 False 2759.333333 5603 94.648667 766 6163 3 chr7B.!!$F1 5397
3 TraesCS7D01G319000 chr6A 265993261 265994442 1181 True 345.750000 617 90.724500 2587 5383 4 chr6A.!!$R1 2796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 0.035739 GTGGTTTTCGCCTCCCACTA 59.964 55.0 0.00 0.00 43.21 2.74 F
412 413 0.247301 CAGCGGTTTCGAGCGAAATC 60.247 55.0 19.28 17.76 44.52 2.17 F
1389 1405 0.394899 GGGAATCTGGGTTCAGCCTG 60.395 60.0 0.00 0.00 40.69 4.85 F
1397 1413 0.618458 GGGTTCAGCCTGGTACATGA 59.382 55.0 0.00 0.00 38.20 3.07 F
3208 3349 1.157870 AACGTGTGTCGCCCAAAGAG 61.158 55.0 0.00 0.00 44.19 2.85 F
3567 3708 0.038166 TTGCCTTGGTCCAGGATGTC 59.962 55.0 1.73 0.00 35.71 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1376 1392 0.620556 ATGTACCAGGCTGAACCCAG 59.379 55.000 17.94 0.00 43.22 4.45 R
1980 2001 1.304381 GGCCTGCTTCCCATTGTCA 60.304 57.895 0.00 0.00 0.00 3.58 R
3180 3321 0.313043 CGACACACGTTAGACCAGGT 59.687 55.000 0.00 0.00 37.22 4.00 R
3245 3386 0.590195 CTTCATAAGCATGGCCTCGC 59.410 55.000 3.32 6.57 32.61 5.03 R
4216 4364 0.998145 AGAGGGATGGCAAGCTCTTT 59.002 50.000 0.00 0.00 0.00 2.52 R
5184 5435 1.003355 AGCCACATGTCTGGTTCGG 60.003 57.895 0.00 0.00 33.30 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.551760 AAATTCCATAGAAGCAAGACACG 57.448 39.130 0.00 0.00 34.86 4.49
25 26 3.678056 TTCCATAGAAGCAAGACACGT 57.322 42.857 0.00 0.00 0.00 4.49
26 27 4.794278 TTCCATAGAAGCAAGACACGTA 57.206 40.909 0.00 0.00 0.00 3.57
27 28 4.106029 TCCATAGAAGCAAGACACGTAC 57.894 45.455 0.00 0.00 0.00 3.67
28 29 3.119245 TCCATAGAAGCAAGACACGTACC 60.119 47.826 0.00 0.00 0.00 3.34
29 30 3.368013 CCATAGAAGCAAGACACGTACCA 60.368 47.826 0.00 0.00 0.00 3.25
30 31 4.433615 CATAGAAGCAAGACACGTACCAT 58.566 43.478 0.00 0.00 0.00 3.55
31 32 5.451381 CCATAGAAGCAAGACACGTACCATA 60.451 44.000 0.00 0.00 0.00 2.74
32 33 4.111375 AGAAGCAAGACACGTACCATAG 57.889 45.455 0.00 0.00 0.00 2.23
33 34 3.762288 AGAAGCAAGACACGTACCATAGA 59.238 43.478 0.00 0.00 0.00 1.98
34 35 3.784701 AGCAAGACACGTACCATAGAG 57.215 47.619 0.00 0.00 0.00 2.43
35 36 3.090037 AGCAAGACACGTACCATAGAGT 58.910 45.455 0.00 0.00 0.00 3.24
36 37 3.119459 AGCAAGACACGTACCATAGAGTG 60.119 47.826 0.00 0.00 40.17 3.51
37 38 3.119602 GCAAGACACGTACCATAGAGTGA 60.120 47.826 3.73 0.00 37.95 3.41
38 39 4.663166 CAAGACACGTACCATAGAGTGAG 58.337 47.826 3.73 0.00 37.95 3.51
39 40 3.952931 AGACACGTACCATAGAGTGAGT 58.047 45.455 3.73 0.00 37.95 3.41
40 41 3.690139 AGACACGTACCATAGAGTGAGTG 59.310 47.826 3.73 0.00 37.95 3.51
41 42 2.163815 ACACGTACCATAGAGTGAGTGC 59.836 50.000 3.73 0.00 37.95 4.40
42 43 2.423892 CACGTACCATAGAGTGAGTGCT 59.576 50.000 0.00 0.00 36.79 4.40
43 44 3.090037 ACGTACCATAGAGTGAGTGCTT 58.910 45.455 0.00 0.00 0.00 3.91
44 45 3.119459 ACGTACCATAGAGTGAGTGCTTG 60.119 47.826 0.00 0.00 0.00 4.01
45 46 2.393271 ACCATAGAGTGAGTGCTTGC 57.607 50.000 0.00 0.00 0.00 4.01
46 47 1.905215 ACCATAGAGTGAGTGCTTGCT 59.095 47.619 0.00 0.00 0.00 3.91
47 48 2.277969 CCATAGAGTGAGTGCTTGCTG 58.722 52.381 0.00 0.00 0.00 4.41
48 49 2.093816 CCATAGAGTGAGTGCTTGCTGA 60.094 50.000 0.00 0.00 0.00 4.26
49 50 3.593096 CATAGAGTGAGTGCTTGCTGAA 58.407 45.455 0.00 0.00 0.00 3.02
50 51 2.166821 AGAGTGAGTGCTTGCTGAAG 57.833 50.000 0.00 0.00 0.00 3.02
63 64 1.009829 GCTGAAGCAACGTGGATAGG 58.990 55.000 0.00 0.00 41.59 2.57
64 65 1.656652 CTGAAGCAACGTGGATAGGG 58.343 55.000 0.00 0.00 0.00 3.53
65 66 1.207089 CTGAAGCAACGTGGATAGGGA 59.793 52.381 0.00 0.00 0.00 4.20
66 67 1.626321 TGAAGCAACGTGGATAGGGAA 59.374 47.619 0.00 0.00 0.00 3.97
67 68 2.280628 GAAGCAACGTGGATAGGGAAG 58.719 52.381 0.00 0.00 0.00 3.46
68 69 1.568504 AGCAACGTGGATAGGGAAGA 58.431 50.000 0.00 0.00 0.00 2.87
69 70 1.207329 AGCAACGTGGATAGGGAAGAC 59.793 52.381 0.00 0.00 0.00 3.01
70 71 1.066430 GCAACGTGGATAGGGAAGACA 60.066 52.381 0.00 0.00 0.00 3.41
71 72 2.618053 CAACGTGGATAGGGAAGACAC 58.382 52.381 0.00 0.00 0.00 3.67
72 73 1.192428 ACGTGGATAGGGAAGACACC 58.808 55.000 0.00 0.00 0.00 4.16
73 74 1.273098 ACGTGGATAGGGAAGACACCT 60.273 52.381 0.00 0.00 42.15 4.00
74 75 1.831736 CGTGGATAGGGAAGACACCTT 59.168 52.381 0.00 0.00 39.54 3.50
75 76 2.159085 CGTGGATAGGGAAGACACCTTC 60.159 54.545 0.00 0.00 46.19 3.46
84 85 3.655276 GAAGACACCTTCCGTGAGTAA 57.345 47.619 0.00 0.00 46.20 2.24
85 86 4.189639 GAAGACACCTTCCGTGAGTAAT 57.810 45.455 0.00 0.00 46.20 1.89
86 87 4.566987 GAAGACACCTTCCGTGAGTAATT 58.433 43.478 0.00 0.00 46.20 1.40
87 88 5.717119 GAAGACACCTTCCGTGAGTAATTA 58.283 41.667 0.00 0.00 46.20 1.40
88 89 5.733620 AGACACCTTCCGTGAGTAATTAA 57.266 39.130 0.00 0.00 46.20 1.40
89 90 5.476614 AGACACCTTCCGTGAGTAATTAAC 58.523 41.667 0.00 0.00 46.20 2.01
90 91 4.240096 ACACCTTCCGTGAGTAATTAACG 58.760 43.478 1.94 1.94 46.20 3.18
91 92 4.022068 ACACCTTCCGTGAGTAATTAACGA 60.022 41.667 9.25 0.00 46.20 3.85
92 93 4.561606 CACCTTCCGTGAGTAATTAACGAG 59.438 45.833 9.25 1.31 46.20 4.18
93 94 4.110482 CCTTCCGTGAGTAATTAACGAGG 58.890 47.826 9.25 5.87 39.64 4.63
94 95 3.155093 TCCGTGAGTAATTAACGAGGC 57.845 47.619 9.25 0.00 39.64 4.70
95 96 1.850441 CCGTGAGTAATTAACGAGGCG 59.150 52.381 9.25 0.00 39.64 5.52
96 97 2.478370 CCGTGAGTAATTAACGAGGCGA 60.478 50.000 9.25 0.00 39.64 5.54
97 98 2.782192 CGTGAGTAATTAACGAGGCGAG 59.218 50.000 2.67 0.00 39.64 5.03
98 99 3.114065 GTGAGTAATTAACGAGGCGAGG 58.886 50.000 0.00 0.00 0.00 4.63
99 100 2.100252 TGAGTAATTAACGAGGCGAGGG 59.900 50.000 0.00 0.00 0.00 4.30
100 101 2.360165 GAGTAATTAACGAGGCGAGGGA 59.640 50.000 0.00 0.00 0.00 4.20
101 102 2.361438 AGTAATTAACGAGGCGAGGGAG 59.639 50.000 0.00 0.00 0.00 4.30
102 103 1.481871 AATTAACGAGGCGAGGGAGA 58.518 50.000 0.00 0.00 0.00 3.71
103 104 1.033574 ATTAACGAGGCGAGGGAGAG 58.966 55.000 0.00 0.00 0.00 3.20
104 105 1.664321 TTAACGAGGCGAGGGAGAGC 61.664 60.000 0.00 0.00 0.00 4.09
107 108 3.894947 GAGGCGAGGGAGAGCGTC 61.895 72.222 0.00 0.00 40.29 5.19
127 128 3.474570 GGCAGAGGACCGATGGCT 61.475 66.667 15.45 0.00 36.63 4.75
128 129 2.107953 GCAGAGGACCGATGGCTC 59.892 66.667 1.76 0.00 0.00 4.70
129 130 2.725312 GCAGAGGACCGATGGCTCA 61.725 63.158 1.76 0.00 0.00 4.26
130 131 1.900351 CAGAGGACCGATGGCTCAA 59.100 57.895 0.00 0.00 0.00 3.02
131 132 0.467384 CAGAGGACCGATGGCTCAAT 59.533 55.000 0.00 0.00 0.00 2.57
132 133 1.134280 CAGAGGACCGATGGCTCAATT 60.134 52.381 0.00 0.00 0.00 2.32
133 134 1.139853 AGAGGACCGATGGCTCAATTC 59.860 52.381 0.00 0.00 0.00 2.17
134 135 0.911769 AGGACCGATGGCTCAATTCA 59.088 50.000 0.00 0.00 0.00 2.57
135 136 1.017387 GGACCGATGGCTCAATTCAC 58.983 55.000 0.00 0.00 0.00 3.18
136 137 1.678728 GGACCGATGGCTCAATTCACA 60.679 52.381 0.00 0.00 0.00 3.58
137 138 1.667724 GACCGATGGCTCAATTCACAG 59.332 52.381 0.00 0.00 0.00 3.66
138 139 1.019673 CCGATGGCTCAATTCACAGG 58.980 55.000 0.00 0.00 0.00 4.00
139 140 1.407299 CCGATGGCTCAATTCACAGGA 60.407 52.381 0.00 0.00 0.00 3.86
140 141 1.938577 CGATGGCTCAATTCACAGGAG 59.061 52.381 0.00 0.00 0.00 3.69
141 142 2.419159 CGATGGCTCAATTCACAGGAGA 60.419 50.000 0.00 0.00 0.00 3.71
142 143 3.614092 GATGGCTCAATTCACAGGAGAA 58.386 45.455 0.00 0.00 0.00 2.87
143 144 3.726557 TGGCTCAATTCACAGGAGAAT 57.273 42.857 0.00 0.00 39.81 2.40
144 145 3.349927 TGGCTCAATTCACAGGAGAATG 58.650 45.455 0.00 0.00 38.21 2.67
145 146 2.098770 GGCTCAATTCACAGGAGAATGC 59.901 50.000 0.00 0.00 38.21 3.56
146 147 2.223203 GCTCAATTCACAGGAGAATGCG 60.223 50.000 0.00 0.00 38.21 4.73
147 148 3.264947 CTCAATTCACAGGAGAATGCGA 58.735 45.455 0.00 0.00 38.21 5.10
148 149 3.264947 TCAATTCACAGGAGAATGCGAG 58.735 45.455 0.00 0.00 38.21 5.03
149 150 2.322355 ATTCACAGGAGAATGCGAGG 57.678 50.000 0.00 0.00 36.88 4.63
150 151 0.976641 TTCACAGGAGAATGCGAGGT 59.023 50.000 0.00 0.00 0.00 3.85
151 152 0.247460 TCACAGGAGAATGCGAGGTG 59.753 55.000 0.00 0.00 31.59 4.00
152 153 0.742281 CACAGGAGAATGCGAGGTGG 60.742 60.000 0.00 0.00 0.00 4.61
153 154 1.817099 CAGGAGAATGCGAGGTGGC 60.817 63.158 0.00 0.00 0.00 5.01
154 155 2.892425 GGAGAATGCGAGGTGGCG 60.892 66.667 0.00 0.00 35.06 5.69
155 156 2.892425 GAGAATGCGAGGTGGCGG 60.892 66.667 0.00 0.00 35.06 6.13
156 157 3.371097 GAGAATGCGAGGTGGCGGA 62.371 63.158 0.00 0.00 35.70 5.54
157 158 3.195698 GAATGCGAGGTGGCGGAC 61.196 66.667 0.00 0.00 33.56 4.79
231 232 2.413351 CATCGGTCGATGCGAGGT 59.587 61.111 18.40 0.00 44.27 3.85
232 233 1.946156 CATCGGTCGATGCGAGGTG 60.946 63.158 18.40 0.00 44.27 4.00
233 234 3.138930 ATCGGTCGATGCGAGGTGG 62.139 63.158 4.97 0.00 36.23 4.61
234 235 4.873129 CGGTCGATGCGAGGTGGG 62.873 72.222 0.00 0.00 36.23 4.61
235 236 3.771160 GGTCGATGCGAGGTGGGT 61.771 66.667 0.00 0.00 36.23 4.51
236 237 2.202756 GTCGATGCGAGGTGGGTC 60.203 66.667 0.00 0.00 36.23 4.46
237 238 3.822192 TCGATGCGAGGTGGGTCG 61.822 66.667 0.00 0.00 43.08 4.79
238 239 4.873129 CGATGCGAGGTGGGTCGG 62.873 72.222 0.00 0.00 40.44 4.79
284 285 3.439540 CGGGGGTGGCGACAAATG 61.440 66.667 0.00 0.00 46.06 2.32
285 286 3.758931 GGGGGTGGCGACAAATGC 61.759 66.667 0.00 0.00 46.06 3.56
286 287 4.114997 GGGGTGGCGACAAATGCG 62.115 66.667 0.00 0.00 46.06 4.73
287 288 3.053291 GGGTGGCGACAAATGCGA 61.053 61.111 0.00 0.00 46.06 5.10
288 289 2.480555 GGTGGCGACAAATGCGAG 59.519 61.111 0.00 0.00 46.06 5.03
289 290 2.480555 GTGGCGACAAATGCGAGG 59.519 61.111 0.00 0.00 46.06 4.63
290 291 2.745884 TGGCGACAAATGCGAGGG 60.746 61.111 0.00 0.00 37.44 4.30
291 292 3.508840 GGCGACAAATGCGAGGGG 61.509 66.667 0.00 0.00 0.00 4.79
292 293 2.435938 GCGACAAATGCGAGGGGA 60.436 61.111 0.00 0.00 0.00 4.81
293 294 1.819632 GCGACAAATGCGAGGGGAT 60.820 57.895 0.00 0.00 0.00 3.85
294 295 2.016961 CGACAAATGCGAGGGGATG 58.983 57.895 0.00 0.00 0.00 3.51
295 296 1.439353 CGACAAATGCGAGGGGATGG 61.439 60.000 0.00 0.00 0.00 3.51
296 297 1.076777 ACAAATGCGAGGGGATGGG 60.077 57.895 0.00 0.00 0.00 4.00
297 298 1.829533 CAAATGCGAGGGGATGGGG 60.830 63.158 0.00 0.00 0.00 4.96
298 299 2.006415 AAATGCGAGGGGATGGGGA 61.006 57.895 0.00 0.00 0.00 4.81
299 300 1.363530 AAATGCGAGGGGATGGGGAT 61.364 55.000 0.00 0.00 0.00 3.85
300 301 2.072874 AATGCGAGGGGATGGGGATG 62.073 60.000 0.00 0.00 0.00 3.51
301 302 3.958860 GCGAGGGGATGGGGATGG 61.959 72.222 0.00 0.00 0.00 3.51
302 303 3.252284 CGAGGGGATGGGGATGGG 61.252 72.222 0.00 0.00 0.00 4.00
303 304 2.860971 GAGGGGATGGGGATGGGG 60.861 72.222 0.00 0.00 0.00 4.96
304 305 3.394792 AGGGGATGGGGATGGGGA 61.395 66.667 0.00 0.00 0.00 4.81
305 306 3.185941 GGGGATGGGGATGGGGAC 61.186 72.222 0.00 0.00 0.00 4.46
306 307 3.570212 GGGATGGGGATGGGGACG 61.570 72.222 0.00 0.00 0.00 4.79
307 308 4.271016 GGATGGGGATGGGGACGC 62.271 72.222 0.00 0.00 0.00 5.19
308 309 4.626081 GATGGGGATGGGGACGCG 62.626 72.222 3.53 3.53 0.00 6.01
317 318 4.344474 GGGGACGCGAGCGGATAG 62.344 72.222 21.69 0.00 44.69 2.08
327 328 3.025176 GCGGATAGCGACGAGTGC 61.025 66.667 0.00 0.00 35.41 4.40
328 329 2.722548 CGGATAGCGACGAGTGCG 60.723 66.667 0.00 0.00 44.79 5.34
329 330 2.353607 GGATAGCGACGAGTGCGG 60.354 66.667 0.00 0.00 43.17 5.69
330 331 2.713770 GATAGCGACGAGTGCGGA 59.286 61.111 0.00 0.00 43.17 5.54
331 332 1.654743 GATAGCGACGAGTGCGGAC 60.655 63.158 0.00 0.00 43.17 4.79
332 333 3.450559 ATAGCGACGAGTGCGGACG 62.451 63.158 0.00 0.00 43.17 4.79
335 336 4.379143 CGACGAGTGCGGACGTGA 62.379 66.667 0.00 0.00 42.74 4.35
336 337 2.502080 GACGAGTGCGGACGTGAG 60.502 66.667 0.00 0.00 42.74 3.51
337 338 3.251318 GACGAGTGCGGACGTGAGT 62.251 63.158 0.00 0.21 45.02 3.41
338 339 3.538028 ACGAGTGCGGACGTGAGTG 62.538 63.158 0.00 0.00 43.13 3.51
347 348 3.727146 ACGTGAGTGGTTTTCGCC 58.273 55.556 0.00 0.00 46.97 5.54
348 349 1.145377 ACGTGAGTGGTTTTCGCCT 59.855 52.632 0.00 0.00 46.97 5.52
349 350 0.878961 ACGTGAGTGGTTTTCGCCTC 60.879 55.000 0.00 0.00 46.97 4.70
350 351 1.566018 CGTGAGTGGTTTTCGCCTCC 61.566 60.000 0.00 0.00 0.00 4.30
351 352 1.072505 TGAGTGGTTTTCGCCTCCC 59.927 57.895 0.00 0.00 0.00 4.30
352 353 1.072505 GAGTGGTTTTCGCCTCCCA 59.927 57.895 0.00 0.00 0.00 4.37
353 354 1.228154 AGTGGTTTTCGCCTCCCAC 60.228 57.895 0.00 0.00 46.17 4.61
354 355 1.228154 GTGGTTTTCGCCTCCCACT 60.228 57.895 0.00 0.00 43.21 4.00
355 356 0.035739 GTGGTTTTCGCCTCCCACTA 59.964 55.000 0.00 0.00 43.21 2.74
356 357 0.766131 TGGTTTTCGCCTCCCACTAA 59.234 50.000 0.00 0.00 0.00 2.24
357 358 1.143277 TGGTTTTCGCCTCCCACTAAA 59.857 47.619 0.00 0.00 0.00 1.85
358 359 1.538512 GGTTTTCGCCTCCCACTAAAC 59.461 52.381 0.00 0.00 0.00 2.01
359 360 1.196127 GTTTTCGCCTCCCACTAAACG 59.804 52.381 0.00 0.00 0.00 3.60
360 361 0.952010 TTTCGCCTCCCACTAAACGC 60.952 55.000 0.00 0.00 0.00 4.84
361 362 1.823169 TTCGCCTCCCACTAAACGCT 61.823 55.000 0.00 0.00 0.00 5.07
362 363 0.966875 TCGCCTCCCACTAAACGCTA 60.967 55.000 0.00 0.00 0.00 4.26
363 364 0.527817 CGCCTCCCACTAAACGCTAG 60.528 60.000 0.00 0.00 0.00 3.42
364 365 0.535797 GCCTCCCACTAAACGCTAGT 59.464 55.000 0.00 0.00 0.00 2.57
365 366 1.471153 GCCTCCCACTAAACGCTAGTC 60.471 57.143 0.00 0.00 0.00 2.59
366 367 1.202268 CCTCCCACTAAACGCTAGTCG 60.202 57.143 5.24 5.24 45.38 4.18
375 376 2.874780 CGCTAGTCGTGTCCGCAC 60.875 66.667 0.00 0.00 41.97 5.34
376 377 2.506438 GCTAGTCGTGTCCGCACC 60.506 66.667 0.00 0.00 42.39 5.01
377 378 2.202440 CTAGTCGTGTCCGCACCG 60.202 66.667 0.00 0.00 42.39 4.94
378 379 4.409218 TAGTCGTGTCCGCACCGC 62.409 66.667 0.00 0.00 42.39 5.68
407 408 4.430423 GCACAGCGGTTTCGAGCG 62.430 66.667 0.00 0.00 39.00 5.03
408 409 2.733218 CACAGCGGTTTCGAGCGA 60.733 61.111 1.89 0.00 39.00 4.93
409 410 2.028484 ACAGCGGTTTCGAGCGAA 59.972 55.556 0.55 0.55 39.00 4.70
410 411 1.593209 ACAGCGGTTTCGAGCGAAA 60.593 52.632 13.40 13.40 41.22 3.46
411 412 0.949105 ACAGCGGTTTCGAGCGAAAT 60.949 50.000 19.28 2.77 44.52 2.17
412 413 0.247301 CAGCGGTTTCGAGCGAAATC 60.247 55.000 19.28 17.76 44.52 2.17
415 416 3.562869 GGTTTCGAGCGAAATCGTG 57.437 52.632 19.28 0.00 44.52 4.35
416 417 0.518559 GGTTTCGAGCGAAATCGTGC 60.519 55.000 19.28 7.63 44.52 5.34
417 418 0.847983 GTTTCGAGCGAAATCGTGCG 60.848 55.000 19.28 8.56 44.52 5.34
418 419 1.951181 TTTCGAGCGAAATCGTGCGG 61.951 55.000 13.40 1.10 43.20 5.69
419 420 3.179265 CGAGCGAAATCGTGCGGT 61.179 61.111 4.59 0.00 42.22 5.68
420 421 2.695646 GAGCGAAATCGTGCGGTC 59.304 61.111 4.59 0.00 45.69 4.79
421 422 2.048597 AGCGAAATCGTGCGGTCA 60.049 55.556 4.59 0.00 42.22 4.02
422 423 2.094659 AGCGAAATCGTGCGGTCAG 61.095 57.895 4.59 0.00 42.22 3.51
423 424 3.081133 CGAAATCGTGCGGTCAGG 58.919 61.111 0.00 0.00 34.11 3.86
424 425 1.445410 CGAAATCGTGCGGTCAGGA 60.445 57.895 0.00 0.00 40.80 3.86
425 426 1.011968 CGAAATCGTGCGGTCAGGAA 61.012 55.000 0.00 0.00 40.07 3.36
426 427 0.442699 GAAATCGTGCGGTCAGGAAC 59.557 55.000 0.00 0.00 40.07 3.62
427 428 1.289109 AAATCGTGCGGTCAGGAACG 61.289 55.000 1.66 1.66 45.82 3.95
428 429 3.642778 ATCGTGCGGTCAGGAACGG 62.643 63.158 8.98 0.00 42.74 4.44
437 438 4.473520 CAGGAACGGGCCGCTCAT 62.474 66.667 28.41 20.80 0.00 2.90
438 439 4.162690 AGGAACGGGCCGCTCATC 62.163 66.667 28.41 19.61 0.00 2.92
439 440 4.162690 GGAACGGGCCGCTCATCT 62.163 66.667 28.41 5.05 0.00 2.90
440 441 2.892425 GAACGGGCCGCTCATCTG 60.892 66.667 28.71 0.00 0.00 2.90
443 444 4.845580 CGGGCCGCTCATCTGCTT 62.846 66.667 15.42 0.00 0.00 3.91
444 445 2.899339 GGGCCGCTCATCTGCTTC 60.899 66.667 0.00 0.00 0.00 3.86
445 446 2.124983 GGCCGCTCATCTGCTTCA 60.125 61.111 0.00 0.00 0.00 3.02
446 447 1.746615 GGCCGCTCATCTGCTTCAA 60.747 57.895 0.00 0.00 0.00 2.69
447 448 1.308069 GGCCGCTCATCTGCTTCAAA 61.308 55.000 0.00 0.00 0.00 2.69
448 449 0.737219 GCCGCTCATCTGCTTCAAAT 59.263 50.000 0.00 0.00 0.00 2.32
449 450 1.942657 GCCGCTCATCTGCTTCAAATA 59.057 47.619 0.00 0.00 0.00 1.40
450 451 2.032204 GCCGCTCATCTGCTTCAAATAG 60.032 50.000 0.00 0.00 0.00 1.73
451 452 2.032204 CCGCTCATCTGCTTCAAATAGC 60.032 50.000 0.00 0.00 41.59 2.97
452 453 2.348311 CGCTCATCTGCTTCAAATAGCG 60.348 50.000 0.00 0.00 44.18 4.26
453 454 2.611292 GCTCATCTGCTTCAAATAGCGT 59.389 45.455 0.00 0.00 44.18 5.07
454 455 3.545624 GCTCATCTGCTTCAAATAGCGTG 60.546 47.826 0.00 0.00 44.18 5.34
455 456 2.352651 TCATCTGCTTCAAATAGCGTGC 59.647 45.455 0.00 0.00 44.18 5.34
456 457 1.807139 TCTGCTTCAAATAGCGTGCA 58.193 45.000 0.00 0.00 44.18 4.57
457 458 1.464608 TCTGCTTCAAATAGCGTGCAC 59.535 47.619 6.82 6.82 44.18 4.57
458 459 1.466167 CTGCTTCAAATAGCGTGCACT 59.534 47.619 16.19 0.00 44.18 4.40
459 460 1.879380 TGCTTCAAATAGCGTGCACTT 59.121 42.857 16.19 5.60 44.18 3.16
460 461 2.293122 TGCTTCAAATAGCGTGCACTTT 59.707 40.909 16.19 5.60 44.18 2.66
461 462 3.243367 TGCTTCAAATAGCGTGCACTTTT 60.243 39.130 16.19 6.69 44.18 2.27
462 463 4.023622 TGCTTCAAATAGCGTGCACTTTTA 60.024 37.500 16.19 4.83 44.18 1.52
463 464 4.915085 GCTTCAAATAGCGTGCACTTTTAA 59.085 37.500 16.19 5.63 0.00 1.52
464 465 5.059710 GCTTCAAATAGCGTGCACTTTTAAG 59.940 40.000 16.19 15.00 0.00 1.85
465 466 5.933187 TCAAATAGCGTGCACTTTTAAGA 57.067 34.783 16.19 2.04 0.00 2.10
466 467 6.307031 TCAAATAGCGTGCACTTTTAAGAA 57.693 33.333 16.19 0.00 0.00 2.52
467 468 6.908825 TCAAATAGCGTGCACTTTTAAGAAT 58.091 32.000 16.19 0.00 0.00 2.40
468 469 7.367285 TCAAATAGCGTGCACTTTTAAGAATT 58.633 30.769 16.19 0.88 0.00 2.17
469 470 7.865385 TCAAATAGCGTGCACTTTTAAGAATTT 59.135 29.630 16.19 6.61 0.00 1.82
470 471 9.123709 CAAATAGCGTGCACTTTTAAGAATTTA 57.876 29.630 16.19 0.00 0.00 1.40
471 472 8.895932 AATAGCGTGCACTTTTAAGAATTTAG 57.104 30.769 16.19 0.00 0.00 1.85
472 473 5.699839 AGCGTGCACTTTTAAGAATTTAGG 58.300 37.500 16.19 0.00 0.00 2.69
497 498 7.275341 GGTTCAATTTAATGCATTCGATTCACA 59.725 33.333 16.86 0.00 0.00 3.58
514 515 7.065803 TCGATTCACACTTTAGATTGGATTTCC 59.934 37.037 0.00 0.00 0.00 3.13
529 530 4.141937 TGGATTTCCAGAATCGATTCGAGT 60.142 41.667 27.69 12.07 42.01 4.18
532 533 1.751351 TCCAGAATCGATTCGAGTGCT 59.249 47.619 27.69 10.48 39.91 4.40
535 536 3.243234 CCAGAATCGATTCGAGTGCTAGT 60.243 47.826 27.69 8.45 39.91 2.57
538 539 4.096532 AGAATCGATTCGAGTGCTAGTGAA 59.903 41.667 27.69 0.00 39.91 3.18
541 542 4.744570 TCGATTCGAGTGCTAGTGAAAAT 58.255 39.130 4.29 0.00 0.00 1.82
563 564 1.388174 TGAATACATGGGTTGGGGGT 58.612 50.000 0.00 0.00 0.00 4.95
565 566 2.107366 GAATACATGGGTTGGGGGTTG 58.893 52.381 0.00 0.00 0.00 3.77
568 569 2.789920 ATGGGTTGGGGGTTGGGT 60.790 61.111 0.00 0.00 0.00 4.51
585 587 0.672401 GGTTTGCCCACTCGATTCGA 60.672 55.000 8.70 8.70 0.00 3.71
592 594 1.340658 CCACTCGATTCGACACAGTG 58.659 55.000 15.41 15.41 31.38 3.66
624 626 3.306472 ACTAGGCCCAACTGAAACAAA 57.694 42.857 0.00 0.00 0.00 2.83
629 631 2.158971 GGCCCAACTGAAACAAACATGT 60.159 45.455 0.00 0.00 0.00 3.21
633 635 5.757808 GCCCAACTGAAACAAACATGTAATT 59.242 36.000 0.00 0.00 0.00 1.40
638 640 8.663911 CAACTGAAACAAACATGTAATTTTGGT 58.336 29.630 11.61 3.23 37.08 3.67
650 652 6.576662 TGTAATTTTGGTAAAATCCGAGCA 57.423 33.333 0.53 0.00 40.05 4.26
657 659 5.913137 TGGTAAAATCCGAGCAATCAAAT 57.087 34.783 0.00 0.00 0.00 2.32
659 661 6.791303 TGGTAAAATCCGAGCAATCAAATAC 58.209 36.000 0.00 0.00 0.00 1.89
660 662 6.375736 TGGTAAAATCCGAGCAATCAAATACA 59.624 34.615 0.00 0.00 0.00 2.29
661 663 6.691388 GGTAAAATCCGAGCAATCAAATACAC 59.309 38.462 0.00 0.00 0.00 2.90
662 664 4.900635 AATCCGAGCAATCAAATACACC 57.099 40.909 0.00 0.00 0.00 4.16
663 665 3.627395 TCCGAGCAATCAAATACACCT 57.373 42.857 0.00 0.00 0.00 4.00
664 666 3.950397 TCCGAGCAATCAAATACACCTT 58.050 40.909 0.00 0.00 0.00 3.50
665 667 3.689161 TCCGAGCAATCAAATACACCTTG 59.311 43.478 0.00 0.00 0.00 3.61
666 668 3.440173 CCGAGCAATCAAATACACCTTGT 59.560 43.478 0.00 0.00 0.00 3.16
667 669 4.634004 CCGAGCAATCAAATACACCTTGTA 59.366 41.667 0.00 0.00 37.24 2.41
668 670 5.296780 CCGAGCAATCAAATACACCTTGTAT 59.703 40.000 0.00 0.00 44.79 2.29
723 725 1.133025 CAATGCACATTCCGGTCCTTC 59.867 52.381 0.00 0.00 0.00 3.46
839 852 7.078228 AGAGTTTGTTATTTCTCGCAACAATC 58.922 34.615 0.00 0.00 40.68 2.67
906 919 0.854218 TCCGCCTCTCCCTCTCTATT 59.146 55.000 0.00 0.00 0.00 1.73
1233 1249 2.727916 GCACAATTTTACGGCCTTCTCG 60.728 50.000 0.00 0.00 0.00 4.04
1287 1303 3.650950 GGCAGGGAAGGCTGACCA 61.651 66.667 10.01 0.00 39.06 4.02
1365 1381 5.775195 AGCTAATCAAGGCCAAAGTAAGTTT 59.225 36.000 5.01 0.00 0.00 2.66
1366 1382 6.267699 AGCTAATCAAGGCCAAAGTAAGTTTT 59.732 34.615 5.01 0.00 0.00 2.43
1389 1405 0.394899 GGGAATCTGGGTTCAGCCTG 60.395 60.000 0.00 0.00 40.69 4.85
1397 1413 0.618458 GGGTTCAGCCTGGTACATGA 59.382 55.000 0.00 0.00 38.20 3.07
1406 1422 2.689983 GCCTGGTACATGATTCCCTTTG 59.310 50.000 0.00 0.00 38.20 2.77
1431 1451 8.400186 TGTTTCATGATGCATTATGTGAACTAG 58.600 33.333 29.68 11.89 30.54 2.57
1441 1461 7.016563 TGCATTATGTGAACTAGATGATACCCT 59.983 37.037 0.00 0.00 0.00 4.34
1720 1741 7.837202 AATGGTTACAGCAATTTTGATGATG 57.163 32.000 14.85 0.00 46.84 3.07
1806 1827 8.917414 ATATAAGATTGGGATCTAGCCTTGTA 57.083 34.615 0.00 0.00 41.78 2.41
2066 2088 9.849166 CGTTGTTAATGTGGGTATATTTTCTTT 57.151 29.630 0.00 0.00 0.00 2.52
2402 2426 3.217626 CTCCAGACCTTGAAAACTGCTT 58.782 45.455 0.00 0.00 0.00 3.91
2683 2814 3.490348 ACTGGCTGCAATTCAGTAAACT 58.510 40.909 12.66 0.00 44.66 2.66
2685 2816 5.256474 ACTGGCTGCAATTCAGTAAACTAT 58.744 37.500 12.66 0.00 44.66 2.12
2711 2842 6.925211 TCTGAAATGGAGAGTGTAAGTACTG 58.075 40.000 0.00 0.00 0.00 2.74
2713 2844 5.542635 TGAAATGGAGAGTGTAAGTACTGGT 59.457 40.000 0.00 0.00 0.00 4.00
2750 2882 3.753294 AGGAATATTAGCTCACCCGTG 57.247 47.619 0.00 0.00 0.00 4.94
3180 3321 2.963101 AGTATATGGAAGGCACGTGCTA 59.037 45.455 36.84 21.97 41.70 3.49
3208 3349 1.157870 AACGTGTGTCGCCCAAAGAG 61.158 55.000 0.00 0.00 44.19 2.85
3245 3386 3.902881 ATCCTTAACCTGACTGCAGAG 57.097 47.619 23.35 8.22 45.17 3.35
3327 3468 7.330720 GTGAAACTAGTTTGGAACTACTACG 57.669 40.000 25.17 0.00 42.81 3.51
3349 3490 2.639065 TGCTTCCTGGCGGTTTATAAG 58.361 47.619 0.00 0.00 34.52 1.73
3481 3622 6.043243 AGGAGACACTGTTCTTTTCTGGAATA 59.957 38.462 0.00 0.00 0.00 1.75
3567 3708 0.038166 TTGCCTTGGTCCAGGATGTC 59.962 55.000 1.73 0.00 35.71 3.06
3603 3751 6.763355 TGAGCCCTTACATCTCTTTCATATC 58.237 40.000 0.00 0.00 0.00 1.63
3827 3975 1.205417 CAAATGCACCCTTAAGCCCAG 59.795 52.381 0.00 0.00 0.00 4.45
3938 4086 3.023832 GTGCCCTTTGTAACCTGCATAT 58.976 45.455 0.00 0.00 0.00 1.78
3941 4089 3.447229 GCCCTTTGTAACCTGCATATGTT 59.553 43.478 4.29 0.00 0.00 2.71
4107 4255 3.695606 TCCTGACGGTGGCTGCTC 61.696 66.667 0.00 0.00 0.00 4.26
4192 4340 5.010282 TGTTTAGCTTCAAAAGGGATCTCC 58.990 41.667 0.00 0.00 0.00 3.71
4237 4385 1.885049 AGAGCTTGCCATCCCTCTTA 58.115 50.000 0.00 0.00 30.91 2.10
4500 4648 9.991906 ATCAAAAGAATCTGATTTTCATGTGTT 57.008 25.926 4.11 0.00 0.00 3.32
4667 4823 7.493499 AGGCTGATATGCTATTCTACTTCAT 57.507 36.000 0.00 0.00 0.00 2.57
4706 4867 6.420903 CGTCGAATTACCACATCACAGATTAT 59.579 38.462 0.00 0.00 0.00 1.28
4707 4868 7.593644 CGTCGAATTACCACATCACAGATTATA 59.406 37.037 0.00 0.00 0.00 0.98
4708 4869 8.916654 GTCGAATTACCACATCACAGATTATAG 58.083 37.037 0.00 0.00 0.00 1.31
4709 4870 8.856103 TCGAATTACCACATCACAGATTATAGA 58.144 33.333 0.00 0.00 0.00 1.98
4710 4871 8.916654 CGAATTACCACATCACAGATTATAGAC 58.083 37.037 0.00 0.00 0.00 2.59
4713 4874 8.942338 TTACCACATCACAGATTATAGACAAC 57.058 34.615 0.00 0.00 0.00 3.32
4714 4875 6.946340 ACCACATCACAGATTATAGACAACA 58.054 36.000 0.00 0.00 0.00 3.33
4716 4877 8.704668 ACCACATCACAGATTATAGACAACATA 58.295 33.333 0.00 0.00 0.00 2.29
4717 4878 9.546428 CCACATCACAGATTATAGACAACATAA 57.454 33.333 0.00 0.00 0.00 1.90
5092 5343 1.003812 TGGAAATACCACGGTGGAAGG 59.996 52.381 32.72 7.47 44.64 3.46
5155 5406 6.588719 TGATAAGAAAACAGAAATGGTGGG 57.411 37.500 0.00 0.00 0.00 4.61
5384 5637 3.118542 CCTTGAGTTTGCACTTTTCAGC 58.881 45.455 0.00 0.00 31.22 4.26
5394 5647 3.005684 TGCACTTTTCAGCCTACATTTGG 59.994 43.478 0.00 0.00 0.00 3.28
5425 5678 7.651304 CACAACTTCATTGCCTGTATTTTGTTA 59.349 33.333 0.00 0.00 42.62 2.41
5426 5679 7.651704 ACAACTTCATTGCCTGTATTTTGTTAC 59.348 33.333 0.00 0.00 42.62 2.50
5427 5680 7.524717 ACTTCATTGCCTGTATTTTGTTACT 57.475 32.000 0.00 0.00 0.00 2.24
5430 5683 7.144722 TCATTGCCTGTATTTTGTTACTCTG 57.855 36.000 0.00 0.00 0.00 3.35
5431 5684 5.957842 TTGCCTGTATTTTGTTACTCTGG 57.042 39.130 0.00 0.00 0.00 3.86
5432 5685 5.235850 TGCCTGTATTTTGTTACTCTGGA 57.764 39.130 0.00 0.00 0.00 3.86
5519 5774 3.603532 CAGAAATCTGGCTGCAGAACTA 58.396 45.455 20.43 0.00 40.20 2.24
5530 5785 5.528690 TGGCTGCAGAACTATATAAGCAAAG 59.471 40.000 20.43 0.00 0.00 2.77
5550 5805 7.613801 AGCAAAGTGTATACCCAATATTCACAA 59.386 33.333 0.00 0.00 41.63 3.33
5574 5829 9.941664 CAATATGTATCATGGAAAGAAGAACAC 57.058 33.333 0.00 0.00 0.00 3.32
5582 5837 4.442706 TGGAAAGAAGAACACACTGAGAC 58.557 43.478 0.00 0.00 0.00 3.36
5623 5878 9.195411 GAGCACAATAATCTTTCAATCAACAAA 57.805 29.630 0.00 0.00 0.00 2.83
5624 5879 9.715121 AGCACAATAATCTTTCAATCAACAAAT 57.285 25.926 0.00 0.00 0.00 2.32
5653 5908 1.909700 TCCAACACAAATCAGGGAGC 58.090 50.000 0.00 0.00 0.00 4.70
5669 5924 1.975363 GAGCGAGACCATGCTGCAAC 61.975 60.000 6.36 0.00 42.60 4.17
5685 5940 0.653323 CAACACAAACCGAGTTCGCG 60.653 55.000 0.00 0.00 38.18 5.87
5723 5978 8.416329 GCATATTCTTATTTGTTTGACCCAGAT 58.584 33.333 0.00 0.00 0.00 2.90
5728 5983 8.243961 TCTTATTTGTTTGACCCAGATTTTCA 57.756 30.769 0.00 0.00 0.00 2.69
5745 6000 5.550232 TTTTCAACCACATGATCATCTCG 57.450 39.130 4.86 0.00 0.00 4.04
5746 6001 3.893326 TCAACCACATGATCATCTCGT 57.107 42.857 4.86 0.00 0.00 4.18
5747 6002 3.785486 TCAACCACATGATCATCTCGTC 58.215 45.455 4.86 0.00 0.00 4.20
5748 6003 3.195396 TCAACCACATGATCATCTCGTCA 59.805 43.478 4.86 0.00 0.00 4.35
5749 6004 3.449528 ACCACATGATCATCTCGTCAG 57.550 47.619 4.86 0.00 0.00 3.51
5750 6005 2.133553 CCACATGATCATCTCGTCAGC 58.866 52.381 4.86 0.00 0.00 4.26
5751 6006 2.482490 CCACATGATCATCTCGTCAGCA 60.482 50.000 4.86 0.00 0.00 4.41
6005 6260 2.100584 TGTTACACAAAGCAAGCAAGGG 59.899 45.455 0.00 0.00 0.00 3.95
6019 6274 5.569428 GCAAGCAAGGGAATCCAAGTAAAAT 60.569 40.000 0.09 0.00 34.83 1.82
6020 6275 6.466812 CAAGCAAGGGAATCCAAGTAAAATT 58.533 36.000 0.09 0.00 34.83 1.82
6021 6276 7.610865 CAAGCAAGGGAATCCAAGTAAAATTA 58.389 34.615 0.09 0.00 34.83 1.40
6025 6282 8.914011 GCAAGGGAATCCAAGTAAAATTATAGT 58.086 33.333 0.09 0.00 34.83 2.12
6089 6362 3.971032 GCCTATATGTGCCAAGACAAC 57.029 47.619 0.00 0.00 0.00 3.32
6091 6364 3.792401 CCTATATGTGCCAAGACAACGA 58.208 45.455 0.00 0.00 0.00 3.85
6093 6366 4.034048 CCTATATGTGCCAAGACAACGAAC 59.966 45.833 0.00 0.00 0.00 3.95
6094 6367 1.674359 ATGTGCCAAGACAACGAACA 58.326 45.000 0.00 0.00 0.00 3.18
6107 6416 4.339429 ACAACGAACATCAACAAACGAAG 58.661 39.130 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.313905 ACGTGTCTTGCTTCTATGGAATTTAG 59.686 38.462 0.00 0.00 0.00 1.85
1 2 6.170506 ACGTGTCTTGCTTCTATGGAATTTA 58.829 36.000 0.00 0.00 0.00 1.40
2 3 5.003804 ACGTGTCTTGCTTCTATGGAATTT 58.996 37.500 0.00 0.00 0.00 1.82
3 4 4.579869 ACGTGTCTTGCTTCTATGGAATT 58.420 39.130 0.00 0.00 0.00 2.17
4 5 4.207891 ACGTGTCTTGCTTCTATGGAAT 57.792 40.909 0.00 0.00 0.00 3.01
5 6 3.678056 ACGTGTCTTGCTTCTATGGAA 57.322 42.857 0.00 0.00 0.00 3.53
6 7 3.119245 GGTACGTGTCTTGCTTCTATGGA 60.119 47.826 0.00 0.00 0.00 3.41
7 8 3.187700 GGTACGTGTCTTGCTTCTATGG 58.812 50.000 0.00 0.00 0.00 2.74
8 9 3.845178 TGGTACGTGTCTTGCTTCTATG 58.155 45.455 0.00 0.00 0.00 2.23
9 10 4.737855 ATGGTACGTGTCTTGCTTCTAT 57.262 40.909 0.00 0.00 0.00 1.98
10 11 4.945543 TCTATGGTACGTGTCTTGCTTCTA 59.054 41.667 0.00 0.00 0.00 2.10
11 12 3.762288 TCTATGGTACGTGTCTTGCTTCT 59.238 43.478 0.00 0.00 0.00 2.85
12 13 4.106029 TCTATGGTACGTGTCTTGCTTC 57.894 45.455 0.00 0.00 0.00 3.86
13 14 3.510360 ACTCTATGGTACGTGTCTTGCTT 59.490 43.478 0.00 0.00 0.00 3.91
14 15 3.090037 ACTCTATGGTACGTGTCTTGCT 58.910 45.455 0.00 0.00 0.00 3.91
15 16 3.119602 TCACTCTATGGTACGTGTCTTGC 60.120 47.826 0.00 0.00 0.00 4.01
16 17 4.156190 ACTCACTCTATGGTACGTGTCTTG 59.844 45.833 0.00 0.00 0.00 3.02
17 18 4.156190 CACTCACTCTATGGTACGTGTCTT 59.844 45.833 0.00 0.00 0.00 3.01
18 19 3.690139 CACTCACTCTATGGTACGTGTCT 59.310 47.826 0.00 0.00 0.00 3.41
19 20 3.731264 GCACTCACTCTATGGTACGTGTC 60.731 52.174 0.00 0.00 0.00 3.67
20 21 2.163815 GCACTCACTCTATGGTACGTGT 59.836 50.000 0.00 0.00 0.00 4.49
21 22 2.423892 AGCACTCACTCTATGGTACGTG 59.576 50.000 0.00 0.00 0.00 4.49
22 23 2.724454 AGCACTCACTCTATGGTACGT 58.276 47.619 0.00 0.00 0.00 3.57
23 24 3.439293 CAAGCACTCACTCTATGGTACG 58.561 50.000 0.00 0.00 0.00 3.67
24 25 3.118956 AGCAAGCACTCACTCTATGGTAC 60.119 47.826 0.00 0.00 0.00 3.34
25 26 3.099905 AGCAAGCACTCACTCTATGGTA 58.900 45.455 0.00 0.00 0.00 3.25
26 27 1.905215 AGCAAGCACTCACTCTATGGT 59.095 47.619 0.00 0.00 0.00 3.55
27 28 2.093816 TCAGCAAGCACTCACTCTATGG 60.094 50.000 0.00 0.00 0.00 2.74
28 29 3.242549 TCAGCAAGCACTCACTCTATG 57.757 47.619 0.00 0.00 0.00 2.23
29 30 3.859443 CTTCAGCAAGCACTCACTCTAT 58.141 45.455 0.00 0.00 0.00 1.98
30 31 3.309961 CTTCAGCAAGCACTCACTCTA 57.690 47.619 0.00 0.00 0.00 2.43
31 32 2.166821 CTTCAGCAAGCACTCACTCT 57.833 50.000 0.00 0.00 0.00 3.24
44 45 1.009829 CCTATCCACGTTGCTTCAGC 58.990 55.000 0.00 0.00 42.50 4.26
45 46 1.207089 TCCCTATCCACGTTGCTTCAG 59.793 52.381 0.00 0.00 0.00 3.02
46 47 1.271856 TCCCTATCCACGTTGCTTCA 58.728 50.000 0.00 0.00 0.00 3.02
47 48 2.093658 TCTTCCCTATCCACGTTGCTTC 60.094 50.000 0.00 0.00 0.00 3.86
48 49 1.906574 TCTTCCCTATCCACGTTGCTT 59.093 47.619 0.00 0.00 0.00 3.91
49 50 1.207329 GTCTTCCCTATCCACGTTGCT 59.793 52.381 0.00 0.00 0.00 3.91
50 51 1.066430 TGTCTTCCCTATCCACGTTGC 60.066 52.381 0.00 0.00 0.00 4.17
51 52 2.618053 GTGTCTTCCCTATCCACGTTG 58.382 52.381 0.00 0.00 0.00 4.10
52 53 1.553704 GGTGTCTTCCCTATCCACGTT 59.446 52.381 0.00 0.00 0.00 3.99
53 54 1.192428 GGTGTCTTCCCTATCCACGT 58.808 55.000 0.00 0.00 0.00 4.49
54 55 1.486211 AGGTGTCTTCCCTATCCACG 58.514 55.000 0.00 0.00 0.00 4.94
55 56 3.545366 GAAGGTGTCTTCCCTATCCAC 57.455 52.381 0.00 0.00 42.61 4.02
70 71 4.381292 CCTCGTTAATTACTCACGGAAGGT 60.381 45.833 8.01 0.00 34.61 3.50
71 72 4.110482 CCTCGTTAATTACTCACGGAAGG 58.890 47.826 8.01 5.36 34.61 3.46
72 73 3.550678 GCCTCGTTAATTACTCACGGAAG 59.449 47.826 8.01 0.87 34.61 3.46
73 74 3.514645 GCCTCGTTAATTACTCACGGAA 58.485 45.455 8.01 0.00 34.61 4.30
74 75 2.478370 CGCCTCGTTAATTACTCACGGA 60.478 50.000 8.01 0.00 34.61 4.69
75 76 1.850441 CGCCTCGTTAATTACTCACGG 59.150 52.381 8.01 0.94 34.61 4.94
76 77 2.782192 CTCGCCTCGTTAATTACTCACG 59.218 50.000 2.44 2.44 35.18 4.35
77 78 3.114065 CCTCGCCTCGTTAATTACTCAC 58.886 50.000 0.00 0.00 0.00 3.51
78 79 2.100252 CCCTCGCCTCGTTAATTACTCA 59.900 50.000 0.00 0.00 0.00 3.41
79 80 2.360165 TCCCTCGCCTCGTTAATTACTC 59.640 50.000 0.00 0.00 0.00 2.59
80 81 2.361438 CTCCCTCGCCTCGTTAATTACT 59.639 50.000 0.00 0.00 0.00 2.24
81 82 2.360165 TCTCCCTCGCCTCGTTAATTAC 59.640 50.000 0.00 0.00 0.00 1.89
82 83 2.621998 CTCTCCCTCGCCTCGTTAATTA 59.378 50.000 0.00 0.00 0.00 1.40
83 84 1.409427 CTCTCCCTCGCCTCGTTAATT 59.591 52.381 0.00 0.00 0.00 1.40
84 85 1.033574 CTCTCCCTCGCCTCGTTAAT 58.966 55.000 0.00 0.00 0.00 1.40
85 86 1.664321 GCTCTCCCTCGCCTCGTTAA 61.664 60.000 0.00 0.00 0.00 2.01
86 87 2.119655 GCTCTCCCTCGCCTCGTTA 61.120 63.158 0.00 0.00 0.00 3.18
87 88 3.453679 GCTCTCCCTCGCCTCGTT 61.454 66.667 0.00 0.00 0.00 3.85
90 91 3.894947 GACGCTCTCCCTCGCCTC 61.895 72.222 0.00 0.00 0.00 4.70
110 111 3.453070 GAGCCATCGGTCCTCTGCC 62.453 68.421 0.00 0.00 0.00 4.85
111 112 2.107953 GAGCCATCGGTCCTCTGC 59.892 66.667 0.00 0.00 0.00 4.26
112 113 0.467384 ATTGAGCCATCGGTCCTCTG 59.533 55.000 0.00 0.00 35.55 3.35
113 114 1.139853 GAATTGAGCCATCGGTCCTCT 59.860 52.381 0.00 0.00 35.55 3.69
114 115 1.134401 TGAATTGAGCCATCGGTCCTC 60.134 52.381 0.00 0.00 35.55 3.71
115 116 0.911769 TGAATTGAGCCATCGGTCCT 59.088 50.000 0.00 0.00 35.55 3.85
116 117 1.017387 GTGAATTGAGCCATCGGTCC 58.983 55.000 0.00 0.00 35.55 4.46
117 118 1.667724 CTGTGAATTGAGCCATCGGTC 59.332 52.381 0.00 0.00 37.01 4.79
118 119 1.679944 CCTGTGAATTGAGCCATCGGT 60.680 52.381 0.00 0.00 0.00 4.69
119 120 1.019673 CCTGTGAATTGAGCCATCGG 58.980 55.000 0.00 0.00 0.00 4.18
120 121 1.938577 CTCCTGTGAATTGAGCCATCG 59.061 52.381 0.00 0.00 0.00 3.84
121 122 3.272574 TCTCCTGTGAATTGAGCCATC 57.727 47.619 0.00 0.00 0.00 3.51
122 123 3.726557 TTCTCCTGTGAATTGAGCCAT 57.273 42.857 0.00 0.00 0.00 4.40
123 124 3.349927 CATTCTCCTGTGAATTGAGCCA 58.650 45.455 0.00 0.00 34.77 4.75
124 125 2.098770 GCATTCTCCTGTGAATTGAGCC 59.901 50.000 0.00 0.00 34.77 4.70
125 126 2.223203 CGCATTCTCCTGTGAATTGAGC 60.223 50.000 0.00 0.00 34.77 4.26
126 127 3.264947 TCGCATTCTCCTGTGAATTGAG 58.735 45.455 0.00 0.00 34.77 3.02
127 128 3.264947 CTCGCATTCTCCTGTGAATTGA 58.735 45.455 0.00 0.00 35.38 2.57
128 129 2.353889 CCTCGCATTCTCCTGTGAATTG 59.646 50.000 0.00 0.00 35.38 2.32
129 130 2.026822 ACCTCGCATTCTCCTGTGAATT 60.027 45.455 0.00 0.00 35.38 2.17
130 131 1.556911 ACCTCGCATTCTCCTGTGAAT 59.443 47.619 0.00 0.00 35.38 2.57
131 132 0.976641 ACCTCGCATTCTCCTGTGAA 59.023 50.000 0.00 0.00 35.38 3.18
132 133 0.247460 CACCTCGCATTCTCCTGTGA 59.753 55.000 0.00 0.00 34.63 3.58
133 134 0.742281 CCACCTCGCATTCTCCTGTG 60.742 60.000 0.00 0.00 0.00 3.66
134 135 1.599047 CCACCTCGCATTCTCCTGT 59.401 57.895 0.00 0.00 0.00 4.00
135 136 1.817099 GCCACCTCGCATTCTCCTG 60.817 63.158 0.00 0.00 0.00 3.86
136 137 2.586792 GCCACCTCGCATTCTCCT 59.413 61.111 0.00 0.00 0.00 3.69
137 138 2.892425 CGCCACCTCGCATTCTCC 60.892 66.667 0.00 0.00 0.00 3.71
138 139 2.892425 CCGCCACCTCGCATTCTC 60.892 66.667 0.00 0.00 0.00 2.87
139 140 3.390521 TCCGCCACCTCGCATTCT 61.391 61.111 0.00 0.00 0.00 2.40
140 141 3.195698 GTCCGCCACCTCGCATTC 61.196 66.667 0.00 0.00 0.00 2.67
215 216 2.413351 CACCTCGCATCGACCGAT 59.587 61.111 10.00 0.00 33.83 4.18
216 217 3.822192 CCACCTCGCATCGACCGA 61.822 66.667 9.31 9.31 0.00 4.69
217 218 4.873129 CCCACCTCGCATCGACCG 62.873 72.222 0.00 0.00 0.00 4.79
218 219 3.718210 GACCCACCTCGCATCGACC 62.718 68.421 0.00 0.00 0.00 4.79
219 220 2.202756 GACCCACCTCGCATCGAC 60.203 66.667 0.00 0.00 0.00 4.20
220 221 3.822192 CGACCCACCTCGCATCGA 61.822 66.667 0.00 0.00 34.77 3.59
221 222 4.873129 CCGACCCACCTCGCATCG 62.873 72.222 0.00 0.00 31.98 3.84
267 268 3.439540 CATTTGTCGCCACCCCCG 61.440 66.667 0.00 0.00 0.00 5.73
268 269 3.758931 GCATTTGTCGCCACCCCC 61.759 66.667 0.00 0.00 0.00 5.40
269 270 4.114997 CGCATTTGTCGCCACCCC 62.115 66.667 0.00 0.00 0.00 4.95
270 271 3.039202 CTCGCATTTGTCGCCACCC 62.039 63.158 0.00 0.00 0.00 4.61
271 272 2.480555 CTCGCATTTGTCGCCACC 59.519 61.111 0.00 0.00 0.00 4.61
272 273 2.480555 CCTCGCATTTGTCGCCAC 59.519 61.111 0.00 0.00 0.00 5.01
273 274 2.745884 CCCTCGCATTTGTCGCCA 60.746 61.111 0.00 0.00 0.00 5.69
274 275 3.508840 CCCCTCGCATTTGTCGCC 61.509 66.667 0.00 0.00 0.00 5.54
275 276 1.819632 ATCCCCTCGCATTTGTCGC 60.820 57.895 0.00 0.00 0.00 5.19
276 277 1.439353 CCATCCCCTCGCATTTGTCG 61.439 60.000 0.00 0.00 0.00 4.35
277 278 1.103398 CCCATCCCCTCGCATTTGTC 61.103 60.000 0.00 0.00 0.00 3.18
278 279 1.076777 CCCATCCCCTCGCATTTGT 60.077 57.895 0.00 0.00 0.00 2.83
279 280 1.829533 CCCCATCCCCTCGCATTTG 60.830 63.158 0.00 0.00 0.00 2.32
280 281 1.363530 ATCCCCATCCCCTCGCATTT 61.364 55.000 0.00 0.00 0.00 2.32
281 282 1.775877 ATCCCCATCCCCTCGCATT 60.776 57.895 0.00 0.00 0.00 3.56
282 283 2.121781 ATCCCCATCCCCTCGCAT 60.122 61.111 0.00 0.00 0.00 4.73
283 284 3.170672 CATCCCCATCCCCTCGCA 61.171 66.667 0.00 0.00 0.00 5.10
284 285 3.958860 CCATCCCCATCCCCTCGC 61.959 72.222 0.00 0.00 0.00 5.03
285 286 3.252284 CCCATCCCCATCCCCTCG 61.252 72.222 0.00 0.00 0.00 4.63
286 287 2.860971 CCCCATCCCCATCCCCTC 60.861 72.222 0.00 0.00 0.00 4.30
287 288 3.394792 TCCCCATCCCCATCCCCT 61.395 66.667 0.00 0.00 0.00 4.79
288 289 3.185941 GTCCCCATCCCCATCCCC 61.186 72.222 0.00 0.00 0.00 4.81
289 290 3.570212 CGTCCCCATCCCCATCCC 61.570 72.222 0.00 0.00 0.00 3.85
290 291 4.271016 GCGTCCCCATCCCCATCC 62.271 72.222 0.00 0.00 0.00 3.51
291 292 4.626081 CGCGTCCCCATCCCCATC 62.626 72.222 0.00 0.00 0.00 3.51
300 301 4.344474 CTATCCGCTCGCGTCCCC 62.344 72.222 5.77 0.00 37.81 4.81
303 304 4.309347 TCGCTATCCGCTCGCGTC 62.309 66.667 5.77 0.00 46.31 5.19
304 305 4.609247 GTCGCTATCCGCTCGCGT 62.609 66.667 5.77 0.00 46.31 6.01
306 307 4.309347 TCGTCGCTATCCGCTCGC 62.309 66.667 0.00 0.00 36.73 5.03
307 308 2.127571 CTCGTCGCTATCCGCTCG 60.128 66.667 0.00 0.00 36.73 5.03
308 309 1.369448 CACTCGTCGCTATCCGCTC 60.369 63.158 0.00 0.00 36.73 5.03
309 310 2.716244 CACTCGTCGCTATCCGCT 59.284 61.111 0.00 0.00 36.73 5.52
310 311 3.025176 GCACTCGTCGCTATCCGC 61.025 66.667 0.00 0.00 36.73 5.54
311 312 2.722548 CGCACTCGTCGCTATCCG 60.723 66.667 0.00 0.00 38.61 4.18
312 313 2.353607 CCGCACTCGTCGCTATCC 60.354 66.667 0.00 0.00 0.00 2.59
313 314 1.654743 GTCCGCACTCGTCGCTATC 60.655 63.158 0.00 0.00 0.00 2.08
314 315 2.408022 GTCCGCACTCGTCGCTAT 59.592 61.111 0.00 0.00 0.00 2.97
315 316 4.156622 CGTCCGCACTCGTCGCTA 62.157 66.667 0.00 0.00 0.00 4.26
318 319 4.379143 TCACGTCCGCACTCGTCG 62.379 66.667 0.00 0.00 38.23 5.12
319 320 2.502080 CTCACGTCCGCACTCGTC 60.502 66.667 0.00 0.00 38.23 4.20
320 321 3.285215 ACTCACGTCCGCACTCGT 61.285 61.111 0.00 0.00 40.99 4.18
321 322 2.801162 CACTCACGTCCGCACTCG 60.801 66.667 0.00 0.00 0.00 4.18
322 323 2.430921 CCACTCACGTCCGCACTC 60.431 66.667 0.00 0.00 0.00 3.51
323 324 2.306255 AAACCACTCACGTCCGCACT 62.306 55.000 0.00 0.00 0.00 4.40
324 325 1.433837 AAAACCACTCACGTCCGCAC 61.434 55.000 0.00 0.00 0.00 5.34
325 326 1.153329 AAAACCACTCACGTCCGCA 60.153 52.632 0.00 0.00 0.00 5.69
326 327 1.568025 GAAAACCACTCACGTCCGC 59.432 57.895 0.00 0.00 0.00 5.54
327 328 1.850640 CGAAAACCACTCACGTCCG 59.149 57.895 0.00 0.00 0.00 4.79
328 329 1.568025 GCGAAAACCACTCACGTCC 59.432 57.895 0.00 0.00 0.00 4.79
329 330 0.878961 AGGCGAAAACCACTCACGTC 60.879 55.000 0.00 0.00 0.00 4.34
330 331 0.878961 GAGGCGAAAACCACTCACGT 60.879 55.000 0.00 0.00 0.00 4.49
331 332 1.566018 GGAGGCGAAAACCACTCACG 61.566 60.000 0.00 0.00 0.00 4.35
332 333 1.235281 GGGAGGCGAAAACCACTCAC 61.235 60.000 0.00 0.00 0.00 3.51
333 334 1.072505 GGGAGGCGAAAACCACTCA 59.927 57.895 0.00 0.00 0.00 3.41
334 335 1.072505 TGGGAGGCGAAAACCACTC 59.927 57.895 0.00 0.00 0.00 3.51
335 336 3.246687 TGGGAGGCGAAAACCACT 58.753 55.556 0.00 0.00 0.00 4.00
336 337 3.351450 GTGGGAGGCGAAAACCAC 58.649 61.111 0.00 0.00 45.56 4.16
337 338 0.766131 TTAGTGGGAGGCGAAAACCA 59.234 50.000 0.00 0.00 0.00 3.67
338 339 1.538512 GTTTAGTGGGAGGCGAAAACC 59.461 52.381 0.00 0.00 0.00 3.27
339 340 1.196127 CGTTTAGTGGGAGGCGAAAAC 59.804 52.381 0.00 0.00 0.00 2.43
340 341 1.515081 CGTTTAGTGGGAGGCGAAAA 58.485 50.000 0.00 0.00 0.00 2.29
341 342 0.952010 GCGTTTAGTGGGAGGCGAAA 60.952 55.000 0.00 0.00 0.00 3.46
342 343 1.375013 GCGTTTAGTGGGAGGCGAA 60.375 57.895 0.00 0.00 0.00 4.70
343 344 0.966875 TAGCGTTTAGTGGGAGGCGA 60.967 55.000 0.00 0.00 0.00 5.54
344 345 0.527817 CTAGCGTTTAGTGGGAGGCG 60.528 60.000 0.00 0.00 0.00 5.52
345 346 0.535797 ACTAGCGTTTAGTGGGAGGC 59.464 55.000 1.66 0.00 0.00 4.70
346 347 1.202268 CGACTAGCGTTTAGTGGGAGG 60.202 57.143 6.49 0.00 34.64 4.30
347 348 2.190325 CGACTAGCGTTTAGTGGGAG 57.810 55.000 6.49 0.00 34.64 4.30
358 359 2.874780 GTGCGGACACGACTAGCG 60.875 66.667 0.63 5.24 44.60 4.26
390 391 4.430423 CGCTCGAAACCGCTGTGC 62.430 66.667 0.00 0.00 0.00 4.57
391 392 1.827315 TTTCGCTCGAAACCGCTGTG 61.827 55.000 12.73 0.00 38.95 3.66
392 393 0.949105 ATTTCGCTCGAAACCGCTGT 60.949 50.000 18.05 0.69 45.34 4.40
393 394 0.247301 GATTTCGCTCGAAACCGCTG 60.247 55.000 18.05 0.00 45.34 5.18
394 395 1.683790 CGATTTCGCTCGAAACCGCT 61.684 55.000 16.93 3.79 42.99 5.52
395 396 1.295930 CGATTTCGCTCGAAACCGC 60.296 57.895 16.93 10.13 42.99 5.68
396 397 4.925786 CGATTTCGCTCGAAACCG 57.074 55.556 15.68 15.68 43.41 4.44
397 398 0.518559 GCACGATTTCGCTCGAAACC 60.519 55.000 18.05 9.12 45.34 3.27
398 399 0.847983 CGCACGATTTCGCTCGAAAC 60.848 55.000 18.05 11.66 45.34 2.78
399 400 1.414514 CGCACGATTTCGCTCGAAA 59.585 52.632 18.01 18.01 46.37 3.46
400 401 2.441378 CCGCACGATTTCGCTCGAA 61.441 57.895 13.49 0.02 44.43 3.71
401 402 2.878991 CCGCACGATTTCGCTCGA 60.879 61.111 13.49 0.00 44.43 4.04
402 403 3.126722 GACCGCACGATTTCGCTCG 62.127 63.158 0.00 3.94 44.43 5.03
403 404 2.014093 CTGACCGCACGATTTCGCTC 62.014 60.000 0.00 0.00 44.43 5.03
404 405 2.048597 TGACCGCACGATTTCGCT 60.049 55.556 0.00 0.00 44.43 4.93
405 406 2.395690 CTGACCGCACGATTTCGC 59.604 61.111 0.00 0.00 44.43 4.70
406 407 1.011968 TTCCTGACCGCACGATTTCG 61.012 55.000 0.00 0.00 46.33 3.46
407 408 0.442699 GTTCCTGACCGCACGATTTC 59.557 55.000 0.00 0.00 0.00 2.17
408 409 1.289109 CGTTCCTGACCGCACGATTT 61.289 55.000 0.00 0.00 34.49 2.17
409 410 1.736645 CGTTCCTGACCGCACGATT 60.737 57.895 0.00 0.00 34.49 3.34
410 411 2.126071 CGTTCCTGACCGCACGAT 60.126 61.111 0.00 0.00 34.49 3.73
411 412 4.351938 CCGTTCCTGACCGCACGA 62.352 66.667 0.00 0.00 34.49 4.35
420 421 4.473520 ATGAGCGGCCCGTTCCTG 62.474 66.667 17.63 0.00 36.32 3.86
421 422 4.162690 GATGAGCGGCCCGTTCCT 62.163 66.667 17.63 7.58 36.32 3.36
422 423 4.162690 AGATGAGCGGCCCGTTCC 62.163 66.667 17.63 2.78 36.32 3.62
423 424 2.892425 CAGATGAGCGGCCCGTTC 60.892 66.667 13.54 13.54 37.59 3.95
426 427 4.845580 AAGCAGATGAGCGGCCCG 62.846 66.667 0.00 0.00 38.57 6.13
427 428 2.899339 GAAGCAGATGAGCGGCCC 60.899 66.667 0.00 0.00 38.57 5.80
428 429 1.308069 TTTGAAGCAGATGAGCGGCC 61.308 55.000 0.00 0.00 38.57 6.13
429 430 0.737219 ATTTGAAGCAGATGAGCGGC 59.263 50.000 0.00 0.00 40.15 6.53
430 431 2.032204 GCTATTTGAAGCAGATGAGCGG 60.032 50.000 0.00 0.00 42.30 5.52
431 432 2.348311 CGCTATTTGAAGCAGATGAGCG 60.348 50.000 0.00 0.00 44.51 5.03
432 433 2.611292 ACGCTATTTGAAGCAGATGAGC 59.389 45.455 0.00 0.00 42.91 4.26
433 434 3.545624 GCACGCTATTTGAAGCAGATGAG 60.546 47.826 0.00 0.00 42.91 2.90
434 435 2.352651 GCACGCTATTTGAAGCAGATGA 59.647 45.455 0.00 0.00 42.91 2.92
435 436 2.096335 TGCACGCTATTTGAAGCAGATG 59.904 45.455 0.00 0.00 42.91 2.90
436 437 2.096496 GTGCACGCTATTTGAAGCAGAT 59.904 45.455 0.00 0.00 42.91 2.90
437 438 1.464608 GTGCACGCTATTTGAAGCAGA 59.535 47.619 0.00 0.00 42.91 4.26
438 439 1.466167 AGTGCACGCTATTTGAAGCAG 59.534 47.619 12.01 0.00 42.91 4.24
439 440 1.522668 AGTGCACGCTATTTGAAGCA 58.477 45.000 12.01 0.00 42.91 3.91
440 441 2.619013 AAGTGCACGCTATTTGAAGC 57.381 45.000 12.01 0.00 39.21 3.86
441 442 6.370593 TCTTAAAAGTGCACGCTATTTGAAG 58.629 36.000 12.01 14.27 0.00 3.02
442 443 6.307031 TCTTAAAAGTGCACGCTATTTGAA 57.693 33.333 12.01 5.15 0.00 2.69
443 444 5.933187 TCTTAAAAGTGCACGCTATTTGA 57.067 34.783 12.01 7.76 0.00 2.69
444 445 7.566858 AATTCTTAAAAGTGCACGCTATTTG 57.433 32.000 12.01 0.92 0.00 2.32
445 446 9.341899 CTAAATTCTTAAAAGTGCACGCTATTT 57.658 29.630 12.01 13.46 0.00 1.40
446 447 7.968405 CCTAAATTCTTAAAAGTGCACGCTATT 59.032 33.333 12.01 7.84 0.00 1.73
447 448 7.120726 ACCTAAATTCTTAAAAGTGCACGCTAT 59.879 33.333 12.01 1.89 0.00 2.97
448 449 6.428771 ACCTAAATTCTTAAAAGTGCACGCTA 59.571 34.615 12.01 1.19 0.00 4.26
449 450 5.240844 ACCTAAATTCTTAAAAGTGCACGCT 59.759 36.000 12.01 0.00 0.00 5.07
450 451 5.458015 ACCTAAATTCTTAAAAGTGCACGC 58.542 37.500 12.01 0.00 0.00 5.34
451 452 7.136119 TGAACCTAAATTCTTAAAAGTGCACG 58.864 34.615 12.01 0.00 0.00 5.34
452 453 8.865590 TTGAACCTAAATTCTTAAAAGTGCAC 57.134 30.769 9.40 9.40 0.00 4.57
465 466 9.868277 TCGAATGCATTAAATTGAACCTAAATT 57.132 25.926 12.97 0.00 0.00 1.82
467 468 9.868277 AATCGAATGCATTAAATTGAACCTAAA 57.132 25.926 12.97 0.00 0.00 1.85
468 469 9.515020 GAATCGAATGCATTAAATTGAACCTAA 57.485 29.630 12.97 0.00 0.00 2.69
469 470 8.681806 TGAATCGAATGCATTAAATTGAACCTA 58.318 29.630 12.97 0.00 0.00 3.08
470 471 7.489113 GTGAATCGAATGCATTAAATTGAACCT 59.511 33.333 12.97 0.00 0.00 3.50
471 472 7.275341 TGTGAATCGAATGCATTAAATTGAACC 59.725 33.333 12.97 4.30 0.00 3.62
472 473 8.103924 GTGTGAATCGAATGCATTAAATTGAAC 58.896 33.333 12.97 14.04 0.00 3.18
482 483 6.932356 ATCTAAAGTGTGAATCGAATGCAT 57.068 33.333 0.00 0.00 0.00 3.96
497 498 7.338710 TCGATTCTGGAAATCCAATCTAAAGT 58.661 34.615 3.35 0.00 46.97 2.66
514 515 3.728221 CACTAGCACTCGAATCGATTCTG 59.272 47.826 29.97 23.31 34.61 3.02
529 530 8.849168 CCCATGTATTCAATATTTTCACTAGCA 58.151 33.333 0.00 0.00 0.00 3.49
535 536 7.147585 CCCCAACCCATGTATTCAATATTTTCA 60.148 37.037 0.00 0.00 0.00 2.69
538 539 5.606329 CCCCCAACCCATGTATTCAATATTT 59.394 40.000 0.00 0.00 0.00 1.40
541 542 3.533907 ACCCCCAACCCATGTATTCAATA 59.466 43.478 0.00 0.00 0.00 1.90
552 553 2.647949 AAACCCAACCCCCAACCCA 61.648 57.895 0.00 0.00 0.00 4.51
568 569 0.034198 TGTCGAATCGAGTGGGCAAA 59.966 50.000 5.25 0.00 36.23 3.68
612 614 8.663911 ACCAAAATTACATGTTTGTTTCAGTTG 58.336 29.630 2.30 0.00 37.28 3.16
613 615 8.785329 ACCAAAATTACATGTTTGTTTCAGTT 57.215 26.923 2.30 0.00 37.28 3.16
624 626 7.033185 GCTCGGATTTTACCAAAATTACATGT 58.967 34.615 2.69 2.69 40.97 3.21
629 631 7.831753 TGATTGCTCGGATTTTACCAAAATTA 58.168 30.769 0.00 0.00 40.97 1.40
633 635 5.713792 TTGATTGCTCGGATTTTACCAAA 57.286 34.783 0.00 0.00 0.00 3.28
638 640 6.601613 AGGTGTATTTGATTGCTCGGATTTTA 59.398 34.615 0.00 0.00 0.00 1.52
642 644 4.156455 AGGTGTATTTGATTGCTCGGAT 57.844 40.909 0.00 0.00 0.00 4.18
657 659 4.185394 CGTGCCATACAATACAAGGTGTA 58.815 43.478 0.00 0.00 37.24 2.90
659 661 2.223249 GCGTGCCATACAATACAAGGTG 60.223 50.000 0.00 0.00 0.00 4.00
660 662 2.014128 GCGTGCCATACAATACAAGGT 58.986 47.619 0.00 0.00 0.00 3.50
661 663 2.013400 TGCGTGCCATACAATACAAGG 58.987 47.619 0.00 0.00 0.00 3.61
662 664 2.418280 TGTGCGTGCCATACAATACAAG 59.582 45.455 0.00 0.00 0.00 3.16
663 665 2.427506 TGTGCGTGCCATACAATACAA 58.572 42.857 0.00 0.00 0.00 2.41
664 666 2.100605 TGTGCGTGCCATACAATACA 57.899 45.000 0.00 0.00 0.00 2.29
665 667 2.675844 TCTTGTGCGTGCCATACAATAC 59.324 45.455 0.00 0.00 34.22 1.89
666 668 2.979240 TCTTGTGCGTGCCATACAATA 58.021 42.857 0.00 0.00 34.22 1.90
667 669 1.819928 TCTTGTGCGTGCCATACAAT 58.180 45.000 0.00 0.00 34.22 2.71
668 670 1.265635 GTTCTTGTGCGTGCCATACAA 59.734 47.619 0.00 0.00 33.67 2.41
669 671 0.871722 GTTCTTGTGCGTGCCATACA 59.128 50.000 0.00 0.00 0.00 2.29
670 672 0.168128 GGTTCTTGTGCGTGCCATAC 59.832 55.000 0.00 0.00 0.00 2.39
671 673 1.295357 CGGTTCTTGTGCGTGCCATA 61.295 55.000 0.00 0.00 0.00 2.74
672 674 2.616330 CGGTTCTTGTGCGTGCCAT 61.616 57.895 0.00 0.00 0.00 4.40
673 675 3.276091 CGGTTCTTGTGCGTGCCA 61.276 61.111 0.00 0.00 0.00 4.92
674 676 4.025401 CCGGTTCTTGTGCGTGCC 62.025 66.667 0.00 0.00 0.00 5.01
675 677 3.236618 GACCGGTTCTTGTGCGTGC 62.237 63.158 9.42 0.00 0.00 5.34
723 725 0.453793 TTTGGTGGTCAGTGTTTGCG 59.546 50.000 0.00 0.00 0.00 4.85
998 1011 2.825836 CCGTGGAGGAAGCCATGC 60.826 66.667 0.00 0.00 45.00 4.06
1233 1249 0.804989 CCAATCAAGAACCGACCAGC 59.195 55.000 0.00 0.00 0.00 4.85
1275 1291 3.879892 GACATTTAGATGGTCAGCCTTCC 59.120 47.826 0.00 0.00 39.12 3.46
1287 1303 5.728471 CTCCCGCTATCATGACATTTAGAT 58.272 41.667 0.00 0.62 0.00 1.98
1365 1381 2.632512 GCTGAACCCAGATTCCCAAAAA 59.367 45.455 0.00 0.00 43.02 1.94
1366 1382 2.247358 GCTGAACCCAGATTCCCAAAA 58.753 47.619 0.00 0.00 43.02 2.44
1376 1392 0.620556 ATGTACCAGGCTGAACCCAG 59.379 55.000 17.94 0.00 43.22 4.45
1389 1405 5.975693 TGAAACAAAGGGAATCATGTACC 57.024 39.130 0.00 0.00 0.00 3.34
1397 1413 5.687166 ATGCATCATGAAACAAAGGGAAT 57.313 34.783 0.00 0.00 0.00 3.01
1406 1422 8.615211 TCTAGTTCACATAATGCATCATGAAAC 58.385 33.333 17.03 17.47 0.00 2.78
1551 1572 8.627487 TGCACAACTTTTCTTGTTACTAAATG 57.373 30.769 0.00 0.00 31.73 2.32
1553 1574 8.247562 ACATGCACAACTTTTCTTGTTACTAAA 58.752 29.630 0.00 0.00 31.73 1.85
1555 1576 7.066404 TGACATGCACAACTTTTCTTGTTACTA 59.934 33.333 0.00 0.00 31.73 1.82
1556 1577 6.127758 TGACATGCACAACTTTTCTTGTTACT 60.128 34.615 0.00 0.00 31.73 2.24
1557 1578 6.020678 GTGACATGCACAACTTTTCTTGTTAC 60.021 38.462 13.27 0.00 46.91 2.50
1706 1727 4.092383 GTGCTTCCACATCATCAAAATTGC 59.908 41.667 0.00 0.00 41.67 3.56
1720 1741 1.675483 TGTCAACATGTGTGCTTCCAC 59.325 47.619 0.00 0.00 42.40 4.02
1786 1807 7.821134 ATAATACAAGGCTAGATCCCAATCT 57.179 36.000 0.00 0.00 44.57 2.40
1829 1850 5.925397 TGTTGTAAATGCACAAGGCTAATTG 59.075 36.000 0.00 0.00 45.15 2.32
1980 2001 1.304381 GGCCTGCTTCCCATTGTCA 60.304 57.895 0.00 0.00 0.00 3.58
2066 2088 8.549548 CACTTGAAACACATTAATGAAATTGCA 58.450 29.630 22.16 13.40 36.99 4.08
2334 2358 5.012768 ACTGCTAGTACCTTACCACAACAAT 59.987 40.000 0.00 0.00 0.00 2.71
2683 2814 9.871238 GTACTTACACTCTCCATTTCAGAAATA 57.129 33.333 8.12 0.00 0.00 1.40
2685 2816 7.872993 CAGTACTTACACTCTCCATTTCAGAAA 59.127 37.037 0.00 0.00 0.00 2.52
2721 2853 7.445945 GGTGAGCTAATATTCCTACTGAACAT 58.554 38.462 0.00 0.00 35.31 2.71
2766 2898 5.449553 ACCCTTTCAACAAGAAGTTCATCT 58.550 37.500 5.50 0.00 38.74 2.90
3032 3173 9.846248 CTAGTTTTAATTAGCAGCAGACAAAAT 57.154 29.630 0.00 0.00 0.00 1.82
3137 3278 3.824443 TGAGTGACCGAGTCTTGTTATCA 59.176 43.478 5.77 0.00 33.15 2.15
3180 3321 0.313043 CGACACACGTTAGACCAGGT 59.687 55.000 0.00 0.00 37.22 4.00
3208 3349 1.000359 ATACCCAGCCCCACTTTGC 60.000 57.895 0.00 0.00 0.00 3.68
3245 3386 0.590195 CTTCATAAGCATGGCCTCGC 59.410 55.000 3.32 6.57 32.61 5.03
3327 3468 1.680338 ATAAACCGCCAGGAAGCATC 58.320 50.000 0.00 0.00 41.02 3.91
3349 3490 2.359967 CGTGGGGAGAGGAGGGAAC 61.360 68.421 0.00 0.00 0.00 3.62
3481 3622 4.498894 TCAGATGATCAGACCAGCAATT 57.501 40.909 0.09 0.00 0.00 2.32
3567 3708 3.853355 AAGGGCTCATGAGTATTGAGG 57.147 47.619 23.38 0.00 40.77 3.86
3603 3751 4.766632 GCCTGCCTGGAAAGGGGG 62.767 72.222 15.34 0.00 38.35 5.40
3938 4086 2.391926 TGTGGTCCCTAGTCTCAACA 57.608 50.000 0.00 0.00 0.00 3.33
3941 4089 4.020218 CAGAAAATGTGGTCCCTAGTCTCA 60.020 45.833 0.00 0.00 0.00 3.27
3990 4138 8.017418 TCAAAACAAATACCAAGAATGTTCCT 57.983 30.769 0.00 0.00 33.39 3.36
4107 4255 6.021596 CGTTCCTTCGTTTCCAAATATTCTG 58.978 40.000 0.00 0.00 0.00 3.02
4216 4364 0.998145 AGAGGGATGGCAAGCTCTTT 59.002 50.000 0.00 0.00 0.00 2.52
4237 4385 1.918957 AGGGTATCAAGCCAAGCTCTT 59.081 47.619 0.00 0.00 46.32 2.85
4500 4648 6.262273 CCTCAGCTTAACCTGTAAAAGAACAA 59.738 38.462 0.00 0.00 34.47 2.83
4667 4823 6.919662 GGTAATTCGACGGAATATAGACAACA 59.080 38.462 0.00 0.00 41.99 3.33
4706 4867 5.954757 TCCCCCAAAAACTTATGTTGTCTA 58.045 37.500 0.00 0.00 36.39 2.59
4707 4868 4.810345 TCCCCCAAAAACTTATGTTGTCT 58.190 39.130 0.00 0.00 36.39 3.41
4708 4869 5.538849 TTCCCCCAAAAACTTATGTTGTC 57.461 39.130 0.00 0.00 36.39 3.18
4709 4870 5.959583 TTTCCCCCAAAAACTTATGTTGT 57.040 34.783 0.00 0.00 36.39 3.32
4710 4871 6.353323 ACTTTTCCCCCAAAAACTTATGTTG 58.647 36.000 0.00 0.00 36.39 3.33
4713 4874 9.647797 GTTATACTTTTCCCCCAAAAACTTATG 57.352 33.333 0.00 0.00 33.40 1.90
4714 4875 9.382307 TGTTATACTTTTCCCCCAAAAACTTAT 57.618 29.630 0.00 0.00 33.40 1.73
4716 4877 7.678207 TGTTATACTTTTCCCCCAAAAACTT 57.322 32.000 0.00 0.00 33.40 2.66
4717 4878 7.678207 TTGTTATACTTTTCCCCCAAAAACT 57.322 32.000 0.00 0.00 33.40 2.66
4718 4879 7.769507 TGTTTGTTATACTTTTCCCCCAAAAAC 59.230 33.333 0.00 0.00 33.40 2.43
4719 4880 7.858498 TGTTTGTTATACTTTTCCCCCAAAAA 58.142 30.769 0.00 0.00 33.40 1.94
4720 4881 7.433537 TGTTTGTTATACTTTTCCCCCAAAA 57.566 32.000 0.00 0.00 32.77 2.44
4721 4882 7.619512 ATGTTTGTTATACTTTTCCCCCAAA 57.380 32.000 0.00 0.00 0.00 3.28
4722 4883 8.903059 ATATGTTTGTTATACTTTTCCCCCAA 57.097 30.769 0.00 0.00 0.00 4.12
4779 4941 8.910351 AGTTATGATGATTTAGTTCCTTAGCC 57.090 34.615 0.00 0.00 0.00 3.93
4815 4977 3.689649 GGTATGTGGTAAGCAACTTCTGG 59.310 47.826 0.00 0.00 0.00 3.86
5092 5343 3.965292 TCTCGATCTCACCGAATACAC 57.035 47.619 0.00 0.00 35.48 2.90
5155 5406 6.200097 GCTTTCTCTGCTTATGAGTTAGCTAC 59.800 42.308 0.00 0.00 38.22 3.58
5184 5435 1.003355 AGCCACATGTCTGGTTCGG 60.003 57.895 0.00 0.00 33.30 4.30
5384 5637 2.627699 AGTTGTGCAACCCAAATGTAGG 59.372 45.455 11.00 0.00 42.06 3.18
5394 5647 1.069049 AGGCAATGAAGTTGTGCAACC 59.931 47.619 11.00 0.00 42.06 3.77
5425 5678 3.748645 ATACCTGACAGTCTCCAGAGT 57.251 47.619 1.31 0.00 32.37 3.24
5426 5679 4.709397 AGAAATACCTGACAGTCTCCAGAG 59.291 45.833 1.31 0.00 32.37 3.35
5427 5680 4.464244 CAGAAATACCTGACAGTCTCCAGA 59.536 45.833 1.31 0.00 36.29 3.86
5430 5683 5.355596 CATCAGAAATACCTGACAGTCTCC 58.644 45.833 1.31 0.00 44.93 3.71
5431 5684 4.808364 GCATCAGAAATACCTGACAGTCTC 59.192 45.833 1.31 0.00 44.93 3.36
5432 5685 4.469227 AGCATCAGAAATACCTGACAGTCT 59.531 41.667 1.31 0.00 44.93 3.24
5550 5805 9.113838 GTGTGTTCTTCTTTCCATGATACATAT 57.886 33.333 0.00 0.00 0.00 1.78
5556 5811 5.624159 TCAGTGTGTTCTTCTTTCCATGAT 58.376 37.500 0.00 0.00 0.00 2.45
5557 5812 5.034852 TCAGTGTGTTCTTCTTTCCATGA 57.965 39.130 0.00 0.00 0.00 3.07
5558 5813 5.049818 GTCTCAGTGTGTTCTTCTTTCCATG 60.050 44.000 0.00 0.00 0.00 3.66
5574 5829 3.257873 ACAAGGAGATGTCTGTCTCAGTG 59.742 47.826 6.29 5.67 45.12 3.66
5653 5908 1.229975 TGTGTTGCAGCATGGTCTCG 61.230 55.000 6.50 0.00 35.86 4.04
5669 5924 2.549282 CCGCGAACTCGGTTTGTG 59.451 61.111 8.23 9.39 44.18 3.33
5692 5947 3.896648 ACAAATAAGAATATGCCGCGG 57.103 42.857 24.05 24.05 0.00 6.46
5723 5978 5.003160 ACGAGATGATCATGTGGTTGAAAA 58.997 37.500 14.30 0.00 0.00 2.29
5728 5983 3.790091 CTGACGAGATGATCATGTGGTT 58.210 45.455 19.21 5.95 0.00 3.67
5745 6000 1.998315 CATGTAGTGCTGACTGCTGAC 59.002 52.381 5.87 2.18 43.37 3.51
5746 6001 1.895131 TCATGTAGTGCTGACTGCTGA 59.105 47.619 5.87 0.00 43.37 4.26
5747 6002 2.375173 TCATGTAGTGCTGACTGCTG 57.625 50.000 5.87 0.00 43.37 4.41
5748 6003 3.623906 AATCATGTAGTGCTGACTGCT 57.376 42.857 5.87 0.00 43.37 4.24
5749 6004 3.686241 TGAAATCATGTAGTGCTGACTGC 59.314 43.478 0.00 0.00 43.25 4.40
5750 6005 5.410746 AGTTGAAATCATGTAGTGCTGACTG 59.589 40.000 0.00 0.00 33.21 3.51
5751 6006 5.555017 AGTTGAAATCATGTAGTGCTGACT 58.445 37.500 0.00 0.00 36.07 3.41
6039 6296 9.745880 CTCAATTTACTCGTATAGTACCATTGT 57.254 33.333 12.02 0.00 40.48 2.71
6089 6362 4.452890 ACTCTTCGTTTGTTGATGTTCG 57.547 40.909 0.00 0.00 0.00 3.95
6091 6364 7.441157 TCAGATTACTCTTCGTTTGTTGATGTT 59.559 33.333 0.00 0.00 0.00 2.71
6093 6366 7.351414 TCAGATTACTCTTCGTTTGTTGATG 57.649 36.000 0.00 0.00 0.00 3.07
6094 6367 7.065085 CCATCAGATTACTCTTCGTTTGTTGAT 59.935 37.037 0.00 0.00 0.00 2.57
6107 6416 5.047448 TGCATCTAGCTCCATCAGATTACTC 60.047 44.000 0.00 0.00 45.94 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.