Multiple sequence alignment - TraesCS7D01G318600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G318600 chr7D 100.000 4728 0 0 1 4728 407074755 407070028 0.000000e+00 8732.0
1 TraesCS7D01G318600 chr7B 94.262 3956 123 46 361 4253 418051825 418047911 0.000000e+00 5952.0
2 TraesCS7D01G318600 chr7B 88.390 267 12 6 4475 4728 418047492 418047232 2.140000e-78 303.0
3 TraesCS7D01G318600 chr7A 94.446 3799 119 37 523 4253 464575267 464571493 0.000000e+00 5762.0
4 TraesCS7D01G318600 chr7A 85.380 342 21 14 4372 4707 464571343 464571025 1.270000e-85 327.0
5 TraesCS7D01G318600 chr6A 88.958 643 56 7 972 1614 504123794 504123167 0.000000e+00 780.0
6 TraesCS7D01G318600 chr6A 90.147 477 40 5 1752 2222 504123176 504122701 8.700000e-172 614.0
7 TraesCS7D01G318600 chr6A 84.286 350 49 5 1 345 540151393 540151741 2.110000e-88 337.0
8 TraesCS7D01G318600 chr1B 86.653 487 33 16 361 820 46514636 46514155 1.170000e-140 510.0
9 TraesCS7D01G318600 chr1B 84.400 500 36 17 361 831 53604487 53604001 2.010000e-123 453.0
10 TraesCS7D01G318600 chr4B 85.000 500 39 17 361 831 475717919 475717427 4.280000e-130 475.0
11 TraesCS7D01G318600 chr4B 74.179 670 111 44 2485 3108 119823533 119822880 6.160000e-54 222.0
12 TraesCS7D01G318600 chr2A 85.511 352 40 9 1 345 66767555 66767208 1.620000e-94 357.0
13 TraesCS7D01G318600 chr2A 84.046 351 49 6 1 345 765574227 765573878 9.810000e-87 331.0
14 TraesCS7D01G318600 chr2A 76.287 641 118 17 2494 3108 530380453 530381085 1.280000e-80 311.0
15 TraesCS7D01G318600 chr5B 84.330 351 47 6 1 345 590180771 590180423 2.110000e-88 337.0
16 TraesCS7D01G318600 chr3B 84.286 350 49 6 1 345 49869650 49869998 2.110000e-88 337.0
17 TraesCS7D01G318600 chr3B 88.333 120 14 0 3296 3415 572078161 572078280 1.370000e-30 145.0
18 TraesCS7D01G318600 chr1D 84.375 352 44 8 1 345 431763840 431764187 7.580000e-88 335.0
19 TraesCS7D01G318600 chr1D 73.380 710 139 33 2425 3097 53965428 53964732 7.970000e-53 219.0
20 TraesCS7D01G318600 chr4D 84.000 350 48 7 1 345 120095331 120095677 3.530000e-86 329.0
21 TraesCS7D01G318600 chr4D 74.948 483 90 24 2485 2950 84546348 84545880 4.830000e-45 193.0
22 TraesCS7D01G318600 chr4D 88.073 109 12 1 3000 3108 84545793 84545686 1.380000e-25 128.0
23 TraesCS7D01G318600 chr5D 84.412 340 42 9 13 345 76030868 76030533 1.640000e-84 324.0
24 TraesCS7D01G318600 chr5D 83.569 353 46 11 1 345 318867584 318867932 2.120000e-83 320.0
25 TraesCS7D01G318600 chr5D 86.538 104 8 3 3005 3105 502596487 502596587 5.000000e-20 110.0
26 TraesCS7D01G318600 chr2B 76.434 645 113 22 2494 3108 464466406 464467041 3.550000e-81 313.0
27 TraesCS7D01G318600 chr2D 76.012 642 118 17 2494 3108 392525787 392526419 2.770000e-77 300.0
28 TraesCS7D01G318600 chr4A 75.569 483 87 24 2485 2950 497441174 497440706 4.790000e-50 209.0
29 TraesCS7D01G318600 chr4A 88.991 109 11 1 3000 3108 497440625 497440518 2.970000e-27 134.0
30 TraesCS7D01G318600 chr5A 84.821 112 17 0 3304 3415 212214940 212215051 3.870000e-21 113.0
31 TraesCS7D01G318600 chr5A 96.774 31 1 0 2488 2518 212214848 212214818 9.000000e-03 52.8
32 TraesCS7D01G318600 chr6D 96.970 33 1 0 2489 2521 205267309 205267277 6.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G318600 chr7D 407070028 407074755 4727 True 8732.0 8732 100.0000 1 4728 1 chr7D.!!$R1 4727
1 TraesCS7D01G318600 chr7B 418047232 418051825 4593 True 3127.5 5952 91.3260 361 4728 2 chr7B.!!$R1 4367
2 TraesCS7D01G318600 chr7A 464571025 464575267 4242 True 3044.5 5762 89.9130 523 4707 2 chr7A.!!$R1 4184
3 TraesCS7D01G318600 chr6A 504122701 504123794 1093 True 697.0 780 89.5525 972 2222 2 chr6A.!!$R1 1250
4 TraesCS7D01G318600 chr4B 119822880 119823533 653 True 222.0 222 74.1790 2485 3108 1 chr4B.!!$R1 623
5 TraesCS7D01G318600 chr2A 530380453 530381085 632 False 311.0 311 76.2870 2494 3108 1 chr2A.!!$F1 614
6 TraesCS7D01G318600 chr1D 53964732 53965428 696 True 219.0 219 73.3800 2425 3097 1 chr1D.!!$R1 672
7 TraesCS7D01G318600 chr2B 464466406 464467041 635 False 313.0 313 76.4340 2494 3108 1 chr2B.!!$F1 614
8 TraesCS7D01G318600 chr2D 392525787 392526419 632 False 300.0 300 76.0120 2494 3108 1 chr2D.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.030092 TGCTAGTCCTATGGGGCCTT 60.030 55.000 0.84 0.0 38.13 4.35 F
826 856 0.103390 CCAACCCAACGAAACCCAAC 59.897 55.000 0.00 0.0 0.00 3.77 F
992 1038 0.743688 CATGTCGTCTCCTCCCTCTG 59.256 60.000 0.00 0.0 0.00 3.35 F
993 1039 1.040339 ATGTCGTCTCCTCCCTCTGC 61.040 60.000 0.00 0.0 0.00 4.26 F
997 1043 1.309688 GTCTCCTCCCTCTGCCTCT 59.690 63.158 0.00 0.0 0.00 3.69 F
2037 2103 1.421410 GCTCCTGCAACATCGTACCG 61.421 60.000 0.00 0.0 39.41 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1318 1.002624 GGCGTTGAAGGGGATGTCA 60.003 57.895 0.00 0.0 0.00 3.58 R
2037 2103 1.377856 GCAAAGCCTCCCTGAGTCC 60.378 63.158 0.00 0.0 0.00 3.85 R
2148 2214 4.514577 CCGAGCTGGGCCGTACTG 62.515 72.222 0.21 0.0 0.00 2.74 R
3194 3322 1.327764 GGATCTTGTCGATGTTTCCGC 59.672 52.381 0.00 0.0 30.84 5.54 R
3363 3491 2.356313 ACCACGCACTCTTCGCAG 60.356 61.111 0.00 0.0 0.00 5.18 R
4071 4228 0.036671 ACCTAGCCTTTGCGTGGTAC 60.037 55.000 3.43 0.0 42.95 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.553079 GTGTCTCTGACGGATCTGTC 57.447 55.000 25.15 25.15 39.37 3.51
20 21 1.133407 GTGTCTCTGACGGATCTGTCC 59.867 57.143 27.92 14.79 41.40 4.02
21 22 1.004862 TGTCTCTGACGGATCTGTCCT 59.995 52.381 27.92 0.00 42.73 3.85
22 23 2.096248 GTCTCTGACGGATCTGTCCTT 58.904 52.381 27.92 0.00 42.73 3.36
23 24 2.095461 TCTCTGACGGATCTGTCCTTG 58.905 52.381 27.92 18.73 42.73 3.61
24 25 2.095461 CTCTGACGGATCTGTCCTTGA 58.905 52.381 27.92 21.24 42.73 3.02
25 26 2.692557 CTCTGACGGATCTGTCCTTGAT 59.307 50.000 27.92 0.00 42.73 2.57
26 27 2.428530 TCTGACGGATCTGTCCTTGATG 59.571 50.000 27.92 13.12 42.73 3.07
27 28 1.482182 TGACGGATCTGTCCTTGATGG 59.518 52.381 27.92 0.00 42.73 3.51
28 29 1.757118 GACGGATCTGTCCTTGATGGA 59.243 52.381 22.10 0.00 42.73 3.41
37 38 2.042686 TCCTTGATGGATTTGCTCGG 57.957 50.000 0.00 0.00 40.56 4.63
38 39 1.559219 TCCTTGATGGATTTGCTCGGA 59.441 47.619 0.00 0.00 40.56 4.55
39 40 2.173356 TCCTTGATGGATTTGCTCGGAT 59.827 45.455 0.00 0.00 40.56 4.18
40 41 2.551459 CCTTGATGGATTTGCTCGGATC 59.449 50.000 0.00 0.00 38.35 3.36
41 42 3.474600 CTTGATGGATTTGCTCGGATCT 58.525 45.455 0.00 0.00 0.00 2.75
42 43 2.842457 TGATGGATTTGCTCGGATCTG 58.158 47.619 0.00 0.00 0.00 2.90
43 44 2.149578 GATGGATTTGCTCGGATCTGG 58.850 52.381 0.62 0.00 0.00 3.86
44 45 0.911769 TGGATTTGCTCGGATCTGGT 59.088 50.000 0.62 0.00 0.00 4.00
45 46 1.134401 TGGATTTGCTCGGATCTGGTC 60.134 52.381 0.62 0.00 0.00 4.02
46 47 1.134401 GGATTTGCTCGGATCTGGTCA 60.134 52.381 0.62 0.00 0.00 4.02
47 48 2.486191 GGATTTGCTCGGATCTGGTCAT 60.486 50.000 0.62 0.00 0.00 3.06
48 49 3.244215 GGATTTGCTCGGATCTGGTCATA 60.244 47.826 0.62 0.00 0.00 2.15
49 50 3.459232 TTTGCTCGGATCTGGTCATAG 57.541 47.619 0.62 0.00 0.00 2.23
50 51 2.073252 TGCTCGGATCTGGTCATAGT 57.927 50.000 0.62 0.00 0.00 2.12
51 52 2.388735 TGCTCGGATCTGGTCATAGTT 58.611 47.619 0.62 0.00 0.00 2.24
52 53 2.362397 TGCTCGGATCTGGTCATAGTTC 59.638 50.000 0.62 0.00 0.00 3.01
53 54 2.288518 GCTCGGATCTGGTCATAGTTCC 60.289 54.545 0.62 0.00 34.58 3.62
54 55 3.226777 CTCGGATCTGGTCATAGTTCCT 58.773 50.000 0.62 0.00 35.38 3.36
55 56 3.223435 TCGGATCTGGTCATAGTTCCTC 58.777 50.000 0.62 0.00 35.38 3.71
56 57 3.117474 TCGGATCTGGTCATAGTTCCTCT 60.117 47.826 0.62 0.00 35.38 3.69
57 58 4.104261 TCGGATCTGGTCATAGTTCCTCTA 59.896 45.833 0.62 0.00 35.38 2.43
58 59 5.013547 CGGATCTGGTCATAGTTCCTCTAT 58.986 45.833 0.00 0.00 39.67 1.98
70 71 8.498054 CATAGTTCCTCTATGTTCATGTGTTT 57.502 34.615 6.68 0.00 46.39 2.83
71 72 8.950210 CATAGTTCCTCTATGTTCATGTGTTTT 58.050 33.333 6.68 0.00 46.39 2.43
72 73 7.823745 AGTTCCTCTATGTTCATGTGTTTTT 57.176 32.000 0.00 0.00 0.00 1.94
73 74 8.918202 AGTTCCTCTATGTTCATGTGTTTTTA 57.082 30.769 0.00 0.00 0.00 1.52
74 75 9.003658 AGTTCCTCTATGTTCATGTGTTTTTAG 57.996 33.333 0.00 0.00 0.00 1.85
75 76 7.921786 TCCTCTATGTTCATGTGTTTTTAGG 57.078 36.000 0.00 0.00 0.00 2.69
76 77 7.458397 TCCTCTATGTTCATGTGTTTTTAGGT 58.542 34.615 0.00 0.00 0.00 3.08
77 78 7.942341 TCCTCTATGTTCATGTGTTTTTAGGTT 59.058 33.333 0.00 0.00 0.00 3.50
78 79 8.023128 CCTCTATGTTCATGTGTTTTTAGGTTG 58.977 37.037 0.00 0.00 0.00 3.77
79 80 8.684386 TCTATGTTCATGTGTTTTTAGGTTGA 57.316 30.769 0.00 0.00 0.00 3.18
80 81 9.126151 TCTATGTTCATGTGTTTTTAGGTTGAA 57.874 29.630 0.00 0.00 0.00 2.69
81 82 9.912634 CTATGTTCATGTGTTTTTAGGTTGAAT 57.087 29.630 0.00 0.00 0.00 2.57
83 84 9.612066 ATGTTCATGTGTTTTTAGGTTGAATTT 57.388 25.926 0.00 0.00 0.00 1.82
84 85 9.442047 TGTTCATGTGTTTTTAGGTTGAATTTT 57.558 25.926 0.00 0.00 0.00 1.82
87 88 9.883142 TCATGTGTTTTTAGGTTGAATTTTTCT 57.117 25.926 0.00 0.00 0.00 2.52
88 89 9.919348 CATGTGTTTTTAGGTTGAATTTTTCTG 57.081 29.630 0.00 0.00 0.00 3.02
89 90 9.883142 ATGTGTTTTTAGGTTGAATTTTTCTGA 57.117 25.926 0.00 0.00 0.00 3.27
90 91 9.883142 TGTGTTTTTAGGTTGAATTTTTCTGAT 57.117 25.926 0.00 0.00 0.00 2.90
96 97 6.183309 AGGTTGAATTTTTCTGATCTACGC 57.817 37.500 0.00 0.00 0.00 4.42
97 98 5.940470 AGGTTGAATTTTTCTGATCTACGCT 59.060 36.000 0.00 0.00 0.00 5.07
98 99 7.103641 AGGTTGAATTTTTCTGATCTACGCTA 58.896 34.615 0.00 0.00 0.00 4.26
99 100 7.606456 AGGTTGAATTTTTCTGATCTACGCTAA 59.394 33.333 0.00 0.00 0.00 3.09
100 101 7.692705 GGTTGAATTTTTCTGATCTACGCTAAC 59.307 37.037 0.00 0.00 0.00 2.34
101 102 8.443937 GTTGAATTTTTCTGATCTACGCTAACT 58.556 33.333 0.00 0.00 0.00 2.24
102 103 8.547967 TGAATTTTTCTGATCTACGCTAACTT 57.452 30.769 0.00 0.00 0.00 2.66
103 104 8.999431 TGAATTTTTCTGATCTACGCTAACTTT 58.001 29.630 0.00 0.00 0.00 2.66
107 108 8.821147 TTTTCTGATCTACGCTAACTTTAACA 57.179 30.769 0.00 0.00 0.00 2.41
108 109 8.462143 TTTCTGATCTACGCTAACTTTAACAG 57.538 34.615 0.00 0.00 0.00 3.16
109 110 6.561614 TCTGATCTACGCTAACTTTAACAGG 58.438 40.000 0.00 0.00 0.00 4.00
110 111 5.107133 TGATCTACGCTAACTTTAACAGGC 58.893 41.667 0.00 0.00 0.00 4.85
111 112 3.504863 TCTACGCTAACTTTAACAGGCG 58.495 45.455 0.00 0.00 46.47 5.52
112 113 2.443887 ACGCTAACTTTAACAGGCGA 57.556 45.000 11.88 0.00 44.36 5.54
113 114 2.968675 ACGCTAACTTTAACAGGCGAT 58.031 42.857 11.88 0.00 44.36 4.58
114 115 3.332034 ACGCTAACTTTAACAGGCGATT 58.668 40.909 11.88 0.00 44.36 3.34
115 116 3.124636 ACGCTAACTTTAACAGGCGATTG 59.875 43.478 11.88 0.00 44.36 2.67
116 117 3.369756 CGCTAACTTTAACAGGCGATTGA 59.630 43.478 0.00 0.00 44.36 2.57
117 118 4.034048 CGCTAACTTTAACAGGCGATTGAT 59.966 41.667 0.00 0.00 44.36 2.57
118 119 5.266242 GCTAACTTTAACAGGCGATTGATG 58.734 41.667 0.00 0.00 0.00 3.07
119 120 5.163754 GCTAACTTTAACAGGCGATTGATGT 60.164 40.000 0.00 0.00 0.00 3.06
120 121 5.705609 AACTTTAACAGGCGATTGATGTT 57.294 34.783 8.52 8.52 40.17 2.71
121 122 5.296813 ACTTTAACAGGCGATTGATGTTC 57.703 39.130 7.13 0.00 38.14 3.18
122 123 5.003804 ACTTTAACAGGCGATTGATGTTCT 58.996 37.500 7.13 0.00 38.14 3.01
123 124 4.944962 TTAACAGGCGATTGATGTTCTG 57.055 40.909 7.13 0.00 38.14 3.02
124 125 1.742761 ACAGGCGATTGATGTTCTGG 58.257 50.000 0.00 0.00 0.00 3.86
125 126 1.003580 ACAGGCGATTGATGTTCTGGT 59.996 47.619 0.00 0.00 0.00 4.00
126 127 1.399440 CAGGCGATTGATGTTCTGGTG 59.601 52.381 0.00 0.00 0.00 4.17
127 128 1.003580 AGGCGATTGATGTTCTGGTGT 59.996 47.619 0.00 0.00 0.00 4.16
128 129 1.131126 GGCGATTGATGTTCTGGTGTG 59.869 52.381 0.00 0.00 0.00 3.82
129 130 1.466360 GCGATTGATGTTCTGGTGTGC 60.466 52.381 0.00 0.00 0.00 4.57
130 131 2.079158 CGATTGATGTTCTGGTGTGCT 58.921 47.619 0.00 0.00 0.00 4.40
131 132 3.261580 CGATTGATGTTCTGGTGTGCTA 58.738 45.455 0.00 0.00 0.00 3.49
132 133 3.308053 CGATTGATGTTCTGGTGTGCTAG 59.692 47.826 0.00 0.00 0.00 3.42
133 134 3.769739 TTGATGTTCTGGTGTGCTAGT 57.230 42.857 0.00 0.00 0.00 2.57
134 135 3.319137 TGATGTTCTGGTGTGCTAGTC 57.681 47.619 0.00 0.00 0.00 2.59
135 136 2.028112 TGATGTTCTGGTGTGCTAGTCC 60.028 50.000 0.00 0.00 0.00 3.85
136 137 1.717032 TGTTCTGGTGTGCTAGTCCT 58.283 50.000 0.00 0.00 0.00 3.85
137 138 2.884320 TGTTCTGGTGTGCTAGTCCTA 58.116 47.619 0.00 0.00 0.00 2.94
138 139 3.441101 TGTTCTGGTGTGCTAGTCCTAT 58.559 45.455 0.00 0.00 0.00 2.57
139 140 3.195610 TGTTCTGGTGTGCTAGTCCTATG 59.804 47.826 0.00 0.00 0.00 2.23
140 141 2.388735 TCTGGTGTGCTAGTCCTATGG 58.611 52.381 0.00 0.00 0.00 2.74
141 142 1.414181 CTGGTGTGCTAGTCCTATGGG 59.586 57.143 0.00 0.00 0.00 4.00
142 143 0.759346 GGTGTGCTAGTCCTATGGGG 59.241 60.000 0.00 0.00 0.00 4.96
143 144 0.106894 GTGTGCTAGTCCTATGGGGC 59.893 60.000 0.00 0.00 37.52 5.80
144 145 1.054406 TGTGCTAGTCCTATGGGGCC 61.054 60.000 0.00 0.00 38.13 5.80
145 146 0.764752 GTGCTAGTCCTATGGGGCCT 60.765 60.000 0.84 0.00 38.13 5.19
146 147 0.030092 TGCTAGTCCTATGGGGCCTT 60.030 55.000 0.84 0.00 38.13 4.35
147 148 1.222039 TGCTAGTCCTATGGGGCCTTA 59.778 52.381 0.84 0.00 38.13 2.69
148 149 1.903183 GCTAGTCCTATGGGGCCTTAG 59.097 57.143 0.84 5.28 38.13 2.18
149 150 1.903183 CTAGTCCTATGGGGCCTTAGC 59.097 57.143 0.84 0.00 38.13 3.09
150 151 0.030092 AGTCCTATGGGGCCTTAGCA 60.030 55.000 0.84 0.00 42.56 3.49
151 152 1.068121 GTCCTATGGGGCCTTAGCAT 58.932 55.000 0.84 0.14 42.56 3.79
152 153 1.067295 TCCTATGGGGCCTTAGCATG 58.933 55.000 0.84 0.00 42.56 4.06
153 154 1.067295 CCTATGGGGCCTTAGCATGA 58.933 55.000 0.84 0.00 42.56 3.07
154 155 1.271597 CCTATGGGGCCTTAGCATGAC 60.272 57.143 0.84 0.00 42.56 3.06
155 156 0.396435 TATGGGGCCTTAGCATGACG 59.604 55.000 0.84 0.00 42.56 4.35
156 157 1.344953 ATGGGGCCTTAGCATGACGA 61.345 55.000 0.84 0.00 42.56 4.20
157 158 1.523938 GGGGCCTTAGCATGACGAC 60.524 63.158 0.84 0.00 42.56 4.34
158 159 1.522569 GGGCCTTAGCATGACGACT 59.477 57.895 0.84 0.00 42.56 4.18
159 160 0.107654 GGGCCTTAGCATGACGACTT 60.108 55.000 0.84 0.00 42.56 3.01
160 161 1.291132 GGCCTTAGCATGACGACTTC 58.709 55.000 0.00 0.00 42.56 3.01
161 162 1.291132 GCCTTAGCATGACGACTTCC 58.709 55.000 0.00 0.00 39.53 3.46
162 163 1.941325 CCTTAGCATGACGACTTCCC 58.059 55.000 0.00 0.00 0.00 3.97
163 164 1.482593 CCTTAGCATGACGACTTCCCT 59.517 52.381 0.00 0.00 0.00 4.20
164 165 2.693591 CCTTAGCATGACGACTTCCCTA 59.306 50.000 0.00 0.00 0.00 3.53
165 166 3.491104 CCTTAGCATGACGACTTCCCTAC 60.491 52.174 0.00 0.00 0.00 3.18
166 167 1.853963 AGCATGACGACTTCCCTACT 58.146 50.000 0.00 0.00 0.00 2.57
167 168 1.478510 AGCATGACGACTTCCCTACTG 59.521 52.381 0.00 0.00 0.00 2.74
168 169 1.204941 GCATGACGACTTCCCTACTGT 59.795 52.381 0.00 0.00 0.00 3.55
169 170 2.735762 GCATGACGACTTCCCTACTGTC 60.736 54.545 0.00 0.00 0.00 3.51
170 171 2.581216 TGACGACTTCCCTACTGTCT 57.419 50.000 0.00 0.00 0.00 3.41
171 172 3.708403 TGACGACTTCCCTACTGTCTA 57.292 47.619 0.00 0.00 0.00 2.59
172 173 3.341823 TGACGACTTCCCTACTGTCTAC 58.658 50.000 0.00 0.00 0.00 2.59
173 174 3.008813 TGACGACTTCCCTACTGTCTACT 59.991 47.826 0.00 0.00 0.00 2.57
174 175 3.608796 ACGACTTCCCTACTGTCTACTC 58.391 50.000 0.00 0.00 0.00 2.59
175 176 3.008813 ACGACTTCCCTACTGTCTACTCA 59.991 47.826 0.00 0.00 0.00 3.41
176 177 4.008330 CGACTTCCCTACTGTCTACTCAA 58.992 47.826 0.00 0.00 0.00 3.02
177 178 4.142643 CGACTTCCCTACTGTCTACTCAAC 60.143 50.000 0.00 0.00 0.00 3.18
178 179 4.737578 ACTTCCCTACTGTCTACTCAACA 58.262 43.478 0.00 0.00 0.00 3.33
179 180 5.145564 ACTTCCCTACTGTCTACTCAACAA 58.854 41.667 0.00 0.00 0.00 2.83
180 181 5.244178 ACTTCCCTACTGTCTACTCAACAAG 59.756 44.000 0.00 0.00 0.00 3.16
181 182 4.737578 TCCCTACTGTCTACTCAACAAGT 58.262 43.478 0.00 0.00 42.33 3.16
182 183 5.145564 TCCCTACTGTCTACTCAACAAGTT 58.854 41.667 0.00 0.00 39.55 2.66
183 184 5.601313 TCCCTACTGTCTACTCAACAAGTTT 59.399 40.000 0.00 0.00 39.55 2.66
184 185 6.099269 TCCCTACTGTCTACTCAACAAGTTTT 59.901 38.462 0.00 0.00 39.55 2.43
185 186 7.288389 TCCCTACTGTCTACTCAACAAGTTTTA 59.712 37.037 0.00 0.00 39.55 1.52
186 187 7.384387 CCCTACTGTCTACTCAACAAGTTTTAC 59.616 40.741 0.00 0.00 39.55 2.01
187 188 7.384387 CCTACTGTCTACTCAACAAGTTTTACC 59.616 40.741 0.00 0.00 39.55 2.85
188 189 6.053650 ACTGTCTACTCAACAAGTTTTACCC 58.946 40.000 0.00 0.00 39.55 3.69
189 190 5.051816 TGTCTACTCAACAAGTTTTACCCG 58.948 41.667 0.00 0.00 39.55 5.28
190 191 5.163426 TGTCTACTCAACAAGTTTTACCCGA 60.163 40.000 0.00 0.00 39.55 5.14
191 192 5.176406 GTCTACTCAACAAGTTTTACCCGAC 59.824 44.000 0.00 0.00 39.55 4.79
192 193 4.146745 ACTCAACAAGTTTTACCCGACT 57.853 40.909 0.00 0.00 33.03 4.18
193 194 4.124970 ACTCAACAAGTTTTACCCGACTC 58.875 43.478 0.00 0.00 33.03 3.36
194 195 3.469739 TCAACAAGTTTTACCCGACTCC 58.530 45.455 0.00 0.00 0.00 3.85
195 196 2.159327 ACAAGTTTTACCCGACTCCG 57.841 50.000 0.00 0.00 0.00 4.63
196 197 1.688197 ACAAGTTTTACCCGACTCCGA 59.312 47.619 0.00 0.00 38.22 4.55
197 198 2.301009 ACAAGTTTTACCCGACTCCGAT 59.699 45.455 0.00 0.00 38.22 4.18
198 199 2.667473 AGTTTTACCCGACTCCGATG 57.333 50.000 0.00 0.00 38.22 3.84
199 200 2.173519 AGTTTTACCCGACTCCGATGA 58.826 47.619 0.00 0.00 38.22 2.92
200 201 2.165845 AGTTTTACCCGACTCCGATGAG 59.834 50.000 0.00 0.00 44.62 2.90
201 202 1.108776 TTTACCCGACTCCGATGAGG 58.891 55.000 0.00 0.00 43.29 3.86
203 204 1.638679 TACCCGACTCCGATGAGGGA 61.639 60.000 5.77 0.00 44.70 4.20
211 212 3.154473 CGATGAGGGAGGGGCGAA 61.154 66.667 0.00 0.00 0.00 4.70
212 213 2.825264 GATGAGGGAGGGGCGAAG 59.175 66.667 0.00 0.00 0.00 3.79
213 214 1.762460 GATGAGGGAGGGGCGAAGA 60.762 63.158 0.00 0.00 0.00 2.87
214 215 2.034048 GATGAGGGAGGGGCGAAGAC 62.034 65.000 0.00 0.00 0.00 3.01
215 216 3.839432 GAGGGAGGGGCGAAGACG 61.839 72.222 0.00 0.00 33.41 4.18
238 239 3.112709 GCGTCTTCGGCTCGCTTT 61.113 61.111 0.00 0.00 45.29 3.51
239 240 1.804326 GCGTCTTCGGCTCGCTTTA 60.804 57.895 0.00 0.00 45.29 1.85
240 241 1.743855 GCGTCTTCGGCTCGCTTTAG 61.744 60.000 0.00 0.00 45.29 1.85
241 242 0.456312 CGTCTTCGGCTCGCTTTAGT 60.456 55.000 0.00 0.00 0.00 2.24
242 243 1.202110 CGTCTTCGGCTCGCTTTAGTA 60.202 52.381 0.00 0.00 0.00 1.82
243 244 2.183636 GTCTTCGGCTCGCTTTAGTAC 58.816 52.381 0.00 0.00 0.00 2.73
244 245 2.089980 TCTTCGGCTCGCTTTAGTACT 58.910 47.619 0.00 0.00 0.00 2.73
245 246 2.490903 TCTTCGGCTCGCTTTAGTACTT 59.509 45.455 0.00 0.00 0.00 2.24
246 247 2.273370 TCGGCTCGCTTTAGTACTTG 57.727 50.000 0.00 0.00 0.00 3.16
247 248 1.542915 TCGGCTCGCTTTAGTACTTGT 59.457 47.619 0.00 0.00 0.00 3.16
248 249 2.749076 TCGGCTCGCTTTAGTACTTGTA 59.251 45.455 0.00 0.00 0.00 2.41
249 250 3.106672 CGGCTCGCTTTAGTACTTGTAG 58.893 50.000 0.00 0.00 0.00 2.74
250 251 3.427233 CGGCTCGCTTTAGTACTTGTAGT 60.427 47.826 0.00 0.00 0.00 2.73
251 252 4.104066 GGCTCGCTTTAGTACTTGTAGTC 58.896 47.826 0.00 0.00 0.00 2.59
252 253 3.784994 GCTCGCTTTAGTACTTGTAGTCG 59.215 47.826 0.00 5.19 0.00 4.18
253 254 4.671250 GCTCGCTTTAGTACTTGTAGTCGT 60.671 45.833 0.00 0.00 0.00 4.34
254 255 5.362556 TCGCTTTAGTACTTGTAGTCGTT 57.637 39.130 0.00 0.00 0.00 3.85
255 256 5.149273 TCGCTTTAGTACTTGTAGTCGTTG 58.851 41.667 0.00 0.00 0.00 4.10
256 257 4.201466 CGCTTTAGTACTTGTAGTCGTTGC 60.201 45.833 0.00 0.00 0.00 4.17
257 258 4.922103 GCTTTAGTACTTGTAGTCGTTGCT 59.078 41.667 0.00 0.00 0.00 3.91
258 259 6.088824 GCTTTAGTACTTGTAGTCGTTGCTA 58.911 40.000 0.00 0.00 0.00 3.49
259 260 6.250951 GCTTTAGTACTTGTAGTCGTTGCTAG 59.749 42.308 0.00 0.00 0.00 3.42
260 261 4.698583 AGTACTTGTAGTCGTTGCTAGG 57.301 45.455 0.00 0.00 0.00 3.02
261 262 4.077822 AGTACTTGTAGTCGTTGCTAGGT 58.922 43.478 0.00 0.00 0.00 3.08
262 263 3.299340 ACTTGTAGTCGTTGCTAGGTG 57.701 47.619 0.00 0.00 0.00 4.00
263 264 2.029290 ACTTGTAGTCGTTGCTAGGTGG 60.029 50.000 0.00 0.00 0.00 4.61
264 265 1.624336 TGTAGTCGTTGCTAGGTGGT 58.376 50.000 0.00 0.00 0.00 4.16
265 266 1.542915 TGTAGTCGTTGCTAGGTGGTC 59.457 52.381 0.00 0.00 0.00 4.02
266 267 1.817447 GTAGTCGTTGCTAGGTGGTCT 59.183 52.381 0.00 0.00 0.00 3.85
267 268 2.211250 AGTCGTTGCTAGGTGGTCTA 57.789 50.000 0.00 0.00 0.00 2.59
268 269 1.817447 AGTCGTTGCTAGGTGGTCTAC 59.183 52.381 0.00 0.00 0.00 2.59
269 270 0.806868 TCGTTGCTAGGTGGTCTACG 59.193 55.000 0.00 0.00 0.00 3.51
270 271 0.179145 CGTTGCTAGGTGGTCTACGG 60.179 60.000 0.00 0.00 0.00 4.02
271 272 1.180029 GTTGCTAGGTGGTCTACGGA 58.820 55.000 0.00 0.00 0.00 4.69
272 273 1.755380 GTTGCTAGGTGGTCTACGGAT 59.245 52.381 0.00 0.00 0.00 4.18
273 274 1.688772 TGCTAGGTGGTCTACGGATC 58.311 55.000 0.00 0.00 0.00 3.36
274 275 0.592148 GCTAGGTGGTCTACGGATCG 59.408 60.000 0.00 0.00 0.00 3.69
275 276 1.813092 GCTAGGTGGTCTACGGATCGA 60.813 57.143 0.00 0.00 0.00 3.59
276 277 2.144730 CTAGGTGGTCTACGGATCGAG 58.855 57.143 0.00 0.00 0.00 4.04
277 278 0.545171 AGGTGGTCTACGGATCGAGA 59.455 55.000 0.00 0.00 0.00 4.04
278 279 1.143277 AGGTGGTCTACGGATCGAGAT 59.857 52.381 0.00 0.00 0.00 2.75
279 280 1.267261 GGTGGTCTACGGATCGAGATG 59.733 57.143 0.00 0.00 0.00 2.90
280 281 0.952280 TGGTCTACGGATCGAGATGC 59.048 55.000 0.00 0.00 0.00 3.91
281 282 0.952280 GGTCTACGGATCGAGATGCA 59.048 55.000 5.50 0.00 0.00 3.96
282 283 1.337071 GGTCTACGGATCGAGATGCAA 59.663 52.381 5.50 0.00 0.00 4.08
283 284 2.029828 GGTCTACGGATCGAGATGCAAT 60.030 50.000 5.50 0.00 0.00 3.56
284 285 3.553096 GGTCTACGGATCGAGATGCAATT 60.553 47.826 5.50 0.00 0.00 2.32
285 286 4.051922 GTCTACGGATCGAGATGCAATTT 58.948 43.478 5.50 0.00 0.00 1.82
286 287 4.508124 GTCTACGGATCGAGATGCAATTTT 59.492 41.667 5.50 0.00 0.00 1.82
287 288 5.006746 GTCTACGGATCGAGATGCAATTTTT 59.993 40.000 5.50 0.00 0.00 1.94
288 289 6.200286 GTCTACGGATCGAGATGCAATTTTTA 59.800 38.462 5.50 0.00 0.00 1.52
289 290 6.929049 TCTACGGATCGAGATGCAATTTTTAT 59.071 34.615 5.50 0.00 0.00 1.40
290 291 6.377327 ACGGATCGAGATGCAATTTTTATT 57.623 33.333 5.50 0.00 0.00 1.40
291 292 7.490962 ACGGATCGAGATGCAATTTTTATTA 57.509 32.000 5.50 0.00 0.00 0.98
292 293 8.099364 ACGGATCGAGATGCAATTTTTATTAT 57.901 30.769 5.50 0.00 0.00 1.28
293 294 8.567948 ACGGATCGAGATGCAATTTTTATTATT 58.432 29.630 5.50 0.00 0.00 1.40
294 295 9.398170 CGGATCGAGATGCAATTTTTATTATTT 57.602 29.630 5.50 0.00 0.00 1.40
298 299 9.734620 TCGAGATGCAATTTTTATTATTTCTGG 57.265 29.630 0.00 0.00 0.00 3.86
299 300 9.520204 CGAGATGCAATTTTTATTATTTCTGGT 57.480 29.630 0.00 0.00 0.00 4.00
313 314 4.875544 TTTCTGGTATTCGCTGTATTGC 57.124 40.909 0.00 0.00 0.00 3.56
314 315 2.833794 TCTGGTATTCGCTGTATTGCC 58.166 47.619 0.00 0.00 0.00 4.52
315 316 2.169561 TCTGGTATTCGCTGTATTGCCA 59.830 45.455 0.00 0.00 0.00 4.92
316 317 3.141398 CTGGTATTCGCTGTATTGCCAT 58.859 45.455 0.00 0.00 0.00 4.40
317 318 2.877786 TGGTATTCGCTGTATTGCCATG 59.122 45.455 0.00 0.00 0.00 3.66
318 319 3.138304 GGTATTCGCTGTATTGCCATGA 58.862 45.455 0.00 0.00 0.00 3.07
319 320 3.753272 GGTATTCGCTGTATTGCCATGAT 59.247 43.478 0.00 0.00 0.00 2.45
320 321 3.909776 ATTCGCTGTATTGCCATGATG 57.090 42.857 0.00 0.00 0.00 3.07
321 322 1.596603 TCGCTGTATTGCCATGATGG 58.403 50.000 7.21 7.21 41.55 3.51
322 323 0.594602 CGCTGTATTGCCATGATGGG 59.405 55.000 14.26 0.00 38.19 4.00
323 324 1.815021 CGCTGTATTGCCATGATGGGA 60.815 52.381 14.26 7.78 38.19 4.37
324 325 1.884579 GCTGTATTGCCATGATGGGAG 59.115 52.381 14.26 0.00 39.66 4.30
325 326 2.487805 GCTGTATTGCCATGATGGGAGA 60.488 50.000 14.26 2.03 39.66 3.71
326 327 3.813240 GCTGTATTGCCATGATGGGAGAT 60.813 47.826 14.26 9.31 39.66 2.75
327 328 3.756963 CTGTATTGCCATGATGGGAGATG 59.243 47.826 14.26 0.00 39.66 2.90
328 329 3.395273 TGTATTGCCATGATGGGAGATGA 59.605 43.478 14.26 0.00 39.66 2.92
329 330 3.605726 ATTGCCATGATGGGAGATGAA 57.394 42.857 14.26 0.00 39.66 2.57
330 331 3.605726 TTGCCATGATGGGAGATGAAT 57.394 42.857 14.26 0.00 39.66 2.57
331 332 4.727792 TTGCCATGATGGGAGATGAATA 57.272 40.909 14.26 0.00 39.66 1.75
332 333 4.296621 TGCCATGATGGGAGATGAATAG 57.703 45.455 14.26 0.00 38.19 1.73
333 334 3.911894 TGCCATGATGGGAGATGAATAGA 59.088 43.478 14.26 0.00 38.19 1.98
334 335 4.538891 TGCCATGATGGGAGATGAATAGAT 59.461 41.667 14.26 0.00 38.19 1.98
335 336 5.124645 GCCATGATGGGAGATGAATAGATC 58.875 45.833 14.26 0.00 38.19 2.75
336 337 5.358090 CCATGATGGGAGATGAATAGATCG 58.642 45.833 2.79 0.00 32.67 3.69
337 338 5.128335 CCATGATGGGAGATGAATAGATCGA 59.872 44.000 2.79 0.00 32.67 3.59
338 339 6.351626 CCATGATGGGAGATGAATAGATCGAA 60.352 42.308 2.79 0.00 32.67 3.71
339 340 6.670695 TGATGGGAGATGAATAGATCGAAA 57.329 37.500 0.00 0.00 0.00 3.46
340 341 6.695429 TGATGGGAGATGAATAGATCGAAAG 58.305 40.000 0.00 0.00 0.00 2.62
341 342 6.268617 TGATGGGAGATGAATAGATCGAAAGT 59.731 38.462 0.00 0.00 0.00 2.66
342 343 6.485830 TGGGAGATGAATAGATCGAAAGTT 57.514 37.500 0.00 0.00 0.00 2.66
343 344 6.889198 TGGGAGATGAATAGATCGAAAGTTT 58.111 36.000 0.00 0.00 0.00 2.66
344 345 7.338710 TGGGAGATGAATAGATCGAAAGTTTT 58.661 34.615 0.00 0.00 0.00 2.43
345 346 7.280876 TGGGAGATGAATAGATCGAAAGTTTTG 59.719 37.037 0.00 0.00 0.00 2.44
346 347 7.495934 GGGAGATGAATAGATCGAAAGTTTTGA 59.504 37.037 8.01 8.01 0.00 2.69
347 348 8.547069 GGAGATGAATAGATCGAAAGTTTTGAG 58.453 37.037 11.20 0.00 0.00 3.02
348 349 9.092876 GAGATGAATAGATCGAAAGTTTTGAGT 57.907 33.333 11.20 4.18 0.00 3.41
387 388 9.264782 CAAGTTTTCAGTATGTTTTGCAAAAAG 57.735 29.630 25.40 11.56 37.40 2.27
388 389 8.770438 AGTTTTCAGTATGTTTTGCAAAAAGA 57.230 26.923 25.40 15.55 37.40 2.52
394 395 9.429359 TCAGTATGTTTTGCAAAAAGAAAAAGA 57.571 25.926 25.40 14.91 35.40 2.52
430 431 4.245660 CGGAAAGCACAAGAGAATAGTGA 58.754 43.478 0.00 0.00 35.33 3.41
432 433 5.179368 CGGAAAGCACAAGAGAATAGTGAAA 59.821 40.000 0.00 0.00 35.33 2.69
433 434 6.293407 CGGAAAGCACAAGAGAATAGTGAAAA 60.293 38.462 0.00 0.00 35.33 2.29
536 538 5.982890 AAGTGGTTATGCACTAATTTGCT 57.017 34.783 3.90 0.00 43.41 3.91
555 558 3.452990 TGCTTCCAGTAACCGATAATCCA 59.547 43.478 0.00 0.00 0.00 3.41
556 559 4.102524 TGCTTCCAGTAACCGATAATCCAT 59.897 41.667 0.00 0.00 0.00 3.41
557 560 4.691216 GCTTCCAGTAACCGATAATCCATC 59.309 45.833 0.00 0.00 0.00 3.51
558 561 4.884668 TCCAGTAACCGATAATCCATCC 57.115 45.455 0.00 0.00 0.00 3.51
616 627 4.132999 GCTAGCTAAGCCAGGCAC 57.867 61.111 15.80 0.00 46.25 5.01
749 776 3.502979 CCATCATCACAATCACACACACA 59.497 43.478 0.00 0.00 0.00 3.72
750 777 4.469552 CATCATCACAATCACACACACAC 58.530 43.478 0.00 0.00 0.00 3.82
817 847 0.537653 AAAACCAACCCAACCCAACG 59.462 50.000 0.00 0.00 0.00 4.10
818 848 0.324460 AAACCAACCCAACCCAACGA 60.324 50.000 0.00 0.00 0.00 3.85
823 853 1.044231 AACCCAACCCAACGAAACCC 61.044 55.000 0.00 0.00 0.00 4.11
826 856 0.103390 CCAACCCAACGAAACCCAAC 59.897 55.000 0.00 0.00 0.00 3.77
856 898 1.073964 TGTACTCGACTCGTTCTCCG 58.926 55.000 0.00 0.00 38.13 4.63
868 910 0.744874 GTTCTCCGTCGATCCATCCA 59.255 55.000 0.00 0.00 0.00 3.41
931 973 3.084039 AGCGAGAAATCAAATCCAAGCA 58.916 40.909 0.00 0.00 0.00 3.91
933 975 4.022068 AGCGAGAAATCAAATCCAAGCAAA 60.022 37.500 0.00 0.00 0.00 3.68
955 997 3.546714 AACCAAACCCGAGCTCCCG 62.547 63.158 8.47 0.06 0.00 5.14
956 998 3.702048 CCAAACCCGAGCTCCCGA 61.702 66.667 8.47 0.00 0.00 5.14
957 999 2.125512 CAAACCCGAGCTCCCGAG 60.126 66.667 8.47 0.00 0.00 4.63
992 1038 0.743688 CATGTCGTCTCCTCCCTCTG 59.256 60.000 0.00 0.00 0.00 3.35
993 1039 1.040339 ATGTCGTCTCCTCCCTCTGC 61.040 60.000 0.00 0.00 0.00 4.26
994 1040 2.043852 TCGTCTCCTCCCTCTGCC 60.044 66.667 0.00 0.00 0.00 4.85
997 1043 1.309688 GTCTCCTCCCTCTGCCTCT 59.690 63.158 0.00 0.00 0.00 3.69
1248 1312 3.834799 GGCCTCACGTCCTACCCG 61.835 72.222 0.00 0.00 0.00 5.28
1254 1318 4.729918 ACGTCCTACCCGTCGGCT 62.730 66.667 5.50 0.00 31.97 5.52
1563 1627 1.880340 CTTCCTCTGCGGCATCGTC 60.880 63.158 1.75 0.00 38.89 4.20
1566 1630 2.169789 CCTCTGCGGCATCGTCAAG 61.170 63.158 1.75 0.00 38.89 3.02
2037 2103 1.421410 GCTCCTGCAACATCGTACCG 61.421 60.000 0.00 0.00 39.41 4.02
2148 2214 1.638467 GATCGTCGTCAGCAATGGC 59.362 57.895 0.00 0.00 41.61 4.40
2292 2361 2.126031 GCGTCCAGGAAGTCGGAC 60.126 66.667 4.13 0.00 46.88 4.79
2460 2529 2.026879 GATCTCTCGCGGCTGACC 59.973 66.667 6.13 0.00 0.00 4.02
3565 3693 8.616076 CCTACTCAACCATGTAAAGATTTGATC 58.384 37.037 0.00 0.00 0.00 2.92
3613 3746 6.727231 TCTGTGTAGGAAGGGTGAATTAGTTA 59.273 38.462 0.00 0.00 0.00 2.24
3694 3830 2.538512 TGCAAGAGATGGATGGATCG 57.461 50.000 0.00 0.00 0.00 3.69
3695 3831 2.041701 TGCAAGAGATGGATGGATCGA 58.958 47.619 0.00 0.00 0.00 3.59
3696 3832 2.636403 TGCAAGAGATGGATGGATCGAT 59.364 45.455 0.00 0.00 0.00 3.59
3697 3833 3.260740 GCAAGAGATGGATGGATCGATC 58.739 50.000 17.36 17.36 40.85 3.69
3748 3884 5.935448 AATTTAACGTTTTGTGGTTCGTG 57.065 34.783 5.91 0.00 36.65 4.35
3816 3957 2.825861 AGTAGTGGTGGGTTTGTACG 57.174 50.000 0.00 0.00 0.00 3.67
3817 3958 2.041701 AGTAGTGGTGGGTTTGTACGT 58.958 47.619 0.00 0.00 0.00 3.57
3818 3959 3.230134 AGTAGTGGTGGGTTTGTACGTA 58.770 45.455 0.00 0.00 0.00 3.57
3819 3960 2.531522 AGTGGTGGGTTTGTACGTAC 57.468 50.000 18.90 18.90 0.00 3.67
3963 4120 6.674694 TGATTCTCTACCGTCTTGTACTAC 57.325 41.667 0.00 0.00 0.00 2.73
3964 4121 6.175471 TGATTCTCTACCGTCTTGTACTACA 58.825 40.000 0.00 0.00 0.00 2.74
3989 4146 5.045578 AGTCTACAATAATGTCCCTTGCTGT 60.046 40.000 0.00 0.00 41.05 4.40
4019 4176 4.631131 TCTCTCGTTTCATTCTCTGCAAA 58.369 39.130 0.00 0.00 0.00 3.68
4021 4178 5.121298 TCTCTCGTTTCATTCTCTGCAAATG 59.879 40.000 3.61 3.61 35.81 2.32
4024 4181 3.916172 CGTTTCATTCTCTGCAAATGGTG 59.084 43.478 9.21 0.00 35.32 4.17
4061 4218 6.429692 ACTTGAACGTCCACATGAATATGAAA 59.570 34.615 0.00 0.00 37.73 2.69
4065 4222 5.581605 ACGTCCACATGAATATGAAAATGC 58.418 37.500 0.00 0.00 37.73 3.56
4093 4265 0.036765 CCACGCAAAGGCTAGGTGTA 60.037 55.000 4.49 0.00 38.10 2.90
4110 4282 6.969993 AGGTGTATTTTTCTTGTGGCTTAA 57.030 33.333 0.00 0.00 0.00 1.85
4113 4285 7.069455 AGGTGTATTTTTCTTGTGGCTTAAGTT 59.931 33.333 4.02 0.00 0.00 2.66
4125 4299 9.696917 CTTGTGGCTTAAGTTGAAATTAAAGAT 57.303 29.630 4.02 0.00 0.00 2.40
4139 4313 9.912634 TGAAATTAAAGATCATTTCAAGGACAC 57.087 29.630 13.63 0.00 43.32 3.67
4150 4324 0.031178 CAAGGACACTTGCTGTTGGC 59.969 55.000 0.00 0.00 46.67 4.52
4194 4372 6.985645 AACGACTGTTACAAGTGGTACAATTA 59.014 34.615 0.00 0.00 40.03 1.40
4195 4373 7.170320 AACGACTGTTACAAGTGGTACAATTAG 59.830 37.037 0.00 0.00 40.03 1.73
4210 4388 6.148976 GGTACAATTAGTTTGGTGAAGTCTCC 59.851 42.308 0.00 0.00 39.80 3.71
4245 4424 7.065683 ACCAAACAAACAAGGAAAACATCAATC 59.934 33.333 0.00 0.00 0.00 2.67
4247 4426 7.775397 AACAAACAAGGAAAACATCAATCAG 57.225 32.000 0.00 0.00 0.00 2.90
4253 4432 9.918630 AACAAGGAAAACATCAATCAGAAATAG 57.081 29.630 0.00 0.00 0.00 1.73
4285 4484 6.715347 AAGCAGTCTACCAATTTCTTTGTT 57.285 33.333 0.00 0.00 33.15 2.83
4290 4489 8.082242 GCAGTCTACCAATTTCTTTGTTTGTAT 58.918 33.333 0.00 0.00 33.15 2.29
4309 4508 1.990799 TGCTGTCAAAGATACCGACG 58.009 50.000 0.00 0.00 32.17 5.12
4310 4509 1.271379 TGCTGTCAAAGATACCGACGT 59.729 47.619 0.00 0.00 32.17 4.34
4312 4511 3.106672 GCTGTCAAAGATACCGACGTAG 58.893 50.000 0.00 0.00 32.17 3.51
4322 4521 7.918536 AAGATACCGACGTAGACATACATAT 57.081 36.000 0.00 0.00 31.76 1.78
4325 4524 9.610705 AGATACCGACGTAGACATACATATATT 57.389 33.333 0.00 0.00 31.76 1.28
4343 4542 9.856162 ACATATATTAAATTAAAGGGACCACGT 57.144 29.630 0.00 0.00 0.00 4.49
4346 4545 6.753107 ATTAAATTAAAGGGACCACGTCAG 57.247 37.500 0.00 0.00 33.68 3.51
4347 4546 3.782656 AATTAAAGGGACCACGTCAGT 57.217 42.857 0.00 0.00 33.68 3.41
4348 4547 4.895668 AATTAAAGGGACCACGTCAGTA 57.104 40.909 0.00 0.00 33.68 2.74
4354 4553 3.671716 AGGGACCACGTCAGTATTTTTC 58.328 45.455 0.00 0.00 33.68 2.29
4355 4554 3.326880 AGGGACCACGTCAGTATTTTTCT 59.673 43.478 0.00 0.00 33.68 2.52
4357 4556 4.153655 GGGACCACGTCAGTATTTTTCTTC 59.846 45.833 0.00 0.00 33.68 2.87
4358 4557 4.153655 GGACCACGTCAGTATTTTTCTTCC 59.846 45.833 0.00 0.00 33.68 3.46
4362 4579 5.912955 CCACGTCAGTATTTTTCTTCCAAAC 59.087 40.000 0.00 0.00 0.00 2.93
4367 4584 6.204108 GTCAGTATTTTTCTTCCAAACGGAGA 59.796 38.462 0.00 0.00 32.88 3.71
4381 4623 5.581085 CCAAACGGAGAGAGTAGTATTTTGG 59.419 44.000 0.00 0.00 35.78 3.28
4413 4655 7.229907 AGTTGTAATTTGACCGGTAAAACATCT 59.770 33.333 19.75 14.38 0.00 2.90
4417 4668 5.621197 TTTGACCGGTAAAACATCTGATG 57.379 39.130 13.49 15.83 0.00 3.07
4422 4673 3.000925 CCGGTAAAACATCTGATGCGTAC 59.999 47.826 17.24 14.95 0.00 3.67
4423 4674 3.615056 CGGTAAAACATCTGATGCGTACA 59.385 43.478 17.24 0.00 0.00 2.90
4436 4691 5.809464 TGATGCGTACAATGATTTCATCAC 58.191 37.500 0.00 0.00 43.01 3.06
4439 4694 4.142708 TGCGTACAATGATTTCATCACACC 60.143 41.667 0.00 0.00 43.01 4.16
4443 4698 3.173599 CAATGATTTCATCACACCGCAC 58.826 45.455 0.00 0.00 43.01 5.34
4449 4704 1.600636 CATCACACCGCACCCAACT 60.601 57.895 0.00 0.00 0.00 3.16
4451 4706 3.964875 CACACCGCACCCAACTGC 61.965 66.667 0.00 0.00 0.00 4.40
4454 4709 4.954970 ACCGCACCCAACTGCCAG 62.955 66.667 0.00 0.00 33.18 4.85
4465 4720 3.947834 CCCAACTGCCAGAGGTTAATTAG 59.052 47.826 0.00 0.00 0.00 1.73
4467 4722 4.636206 CCAACTGCCAGAGGTTAATTAGAC 59.364 45.833 0.00 0.00 0.00 2.59
4468 4723 5.491982 CAACTGCCAGAGGTTAATTAGACT 58.508 41.667 0.00 0.00 0.00 3.24
4469 4724 5.091261 ACTGCCAGAGGTTAATTAGACTG 57.909 43.478 0.00 0.00 0.00 3.51
4472 4727 4.487714 CCAGAGGTTAATTAGACTGGCA 57.512 45.455 0.00 0.00 38.40 4.92
4473 4728 4.446371 CCAGAGGTTAATTAGACTGGCAG 58.554 47.826 14.16 14.16 38.40 4.85
4514 4910 7.546358 CAACAATGGACTAGGCAATATGAAAA 58.454 34.615 0.00 0.00 0.00 2.29
4524 4923 7.775093 ACTAGGCAATATGAAAATTCTGCTGTA 59.225 33.333 0.00 0.00 0.00 2.74
4593 4997 0.538057 CACCACTGCACCAAGGATGT 60.538 55.000 0.00 0.00 0.00 3.06
4596 5000 0.250858 CACTGCACCAAGGATGTGGA 60.251 55.000 0.00 0.00 41.65 4.02
4652 5056 2.203877 TAGGGTGGGCAGACCGTT 60.204 61.111 5.58 0.00 44.64 4.44
4653 5057 1.844289 TAGGGTGGGCAGACCGTTT 60.844 57.895 5.58 0.00 44.64 3.60
4654 5058 1.833787 TAGGGTGGGCAGACCGTTTC 61.834 60.000 5.58 0.00 44.64 2.78
4655 5059 2.671963 GGTGGGCAGACCGTTTCC 60.672 66.667 0.00 0.00 44.64 3.13
4656 5060 2.112297 GTGGGCAGACCGTTTCCA 59.888 61.111 0.00 0.00 44.64 3.53
4657 5061 1.303317 GTGGGCAGACCGTTTCCAT 60.303 57.895 0.00 0.00 44.64 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.133407 GGACAGATCCGTCAGAGACAC 59.867 57.143 11.13 0.00 37.66 3.67
1 2 1.464734 GGACAGATCCGTCAGAGACA 58.535 55.000 11.13 0.00 37.66 3.41
19 20 2.042686 TCCGAGCAAATCCATCAAGG 57.957 50.000 0.00 0.00 39.47 3.61
20 21 3.250280 CAGATCCGAGCAAATCCATCAAG 59.750 47.826 0.00 0.00 0.00 3.02
21 22 3.208594 CAGATCCGAGCAAATCCATCAA 58.791 45.455 0.00 0.00 0.00 2.57
22 23 2.486013 CCAGATCCGAGCAAATCCATCA 60.486 50.000 0.00 0.00 0.00 3.07
23 24 2.149578 CCAGATCCGAGCAAATCCATC 58.850 52.381 0.00 0.00 0.00 3.51
24 25 1.492176 ACCAGATCCGAGCAAATCCAT 59.508 47.619 0.00 0.00 0.00 3.41
25 26 0.911769 ACCAGATCCGAGCAAATCCA 59.088 50.000 0.00 0.00 0.00 3.41
26 27 1.134401 TGACCAGATCCGAGCAAATCC 60.134 52.381 0.00 0.00 0.00 3.01
27 28 2.315925 TGACCAGATCCGAGCAAATC 57.684 50.000 0.00 0.00 0.00 2.17
28 29 3.389329 ACTATGACCAGATCCGAGCAAAT 59.611 43.478 0.00 0.00 0.00 2.32
29 30 2.766263 ACTATGACCAGATCCGAGCAAA 59.234 45.455 0.00 0.00 0.00 3.68
30 31 2.388735 ACTATGACCAGATCCGAGCAA 58.611 47.619 0.00 0.00 0.00 3.91
31 32 2.073252 ACTATGACCAGATCCGAGCA 57.927 50.000 0.00 0.00 0.00 4.26
32 33 2.288518 GGAACTATGACCAGATCCGAGC 60.289 54.545 0.00 0.00 29.05 5.03
33 34 3.226777 AGGAACTATGACCAGATCCGAG 58.773 50.000 0.00 0.00 41.22 4.63
34 35 3.117474 AGAGGAACTATGACCAGATCCGA 60.117 47.826 0.00 0.00 41.55 4.55
35 36 3.226777 AGAGGAACTATGACCAGATCCG 58.773 50.000 0.00 0.00 41.55 4.18
46 47 9.520515 AAAAACACATGAACATAGAGGAACTAT 57.479 29.630 0.00 0.00 41.55 2.12
47 48 8.918202 AAAAACACATGAACATAGAGGAACTA 57.082 30.769 0.00 0.00 41.55 2.24
49 50 8.237267 CCTAAAAACACATGAACATAGAGGAAC 58.763 37.037 0.00 0.00 0.00 3.62
50 51 7.942341 ACCTAAAAACACATGAACATAGAGGAA 59.058 33.333 0.00 0.00 0.00 3.36
51 52 7.458397 ACCTAAAAACACATGAACATAGAGGA 58.542 34.615 0.00 0.00 0.00 3.71
52 53 7.687941 ACCTAAAAACACATGAACATAGAGG 57.312 36.000 0.00 1.01 0.00 3.69
53 54 8.783093 TCAACCTAAAAACACATGAACATAGAG 58.217 33.333 0.00 0.00 0.00 2.43
54 55 8.684386 TCAACCTAAAAACACATGAACATAGA 57.316 30.769 0.00 0.00 0.00 1.98
55 56 9.912634 ATTCAACCTAAAAACACATGAACATAG 57.087 29.630 0.00 0.00 0.00 2.23
57 58 9.612066 AAATTCAACCTAAAAACACATGAACAT 57.388 25.926 0.00 0.00 0.00 2.71
58 59 9.442047 AAAATTCAACCTAAAAACACATGAACA 57.558 25.926 0.00 0.00 0.00 3.18
61 62 9.883142 AGAAAAATTCAACCTAAAAACACATGA 57.117 25.926 0.00 0.00 0.00 3.07
62 63 9.919348 CAGAAAAATTCAACCTAAAAACACATG 57.081 29.630 0.00 0.00 0.00 3.21
63 64 9.883142 TCAGAAAAATTCAACCTAAAAACACAT 57.117 25.926 0.00 0.00 0.00 3.21
64 65 9.883142 ATCAGAAAAATTCAACCTAAAAACACA 57.117 25.926 0.00 0.00 0.00 3.72
70 71 8.234546 GCGTAGATCAGAAAAATTCAACCTAAA 58.765 33.333 0.00 0.00 0.00 1.85
71 72 7.606456 AGCGTAGATCAGAAAAATTCAACCTAA 59.394 33.333 0.00 0.00 0.00 2.69
72 73 7.103641 AGCGTAGATCAGAAAAATTCAACCTA 58.896 34.615 0.00 0.00 0.00 3.08
73 74 5.940470 AGCGTAGATCAGAAAAATTCAACCT 59.060 36.000 0.00 0.00 0.00 3.50
74 75 6.183309 AGCGTAGATCAGAAAAATTCAACC 57.817 37.500 0.00 0.00 0.00 3.77
75 76 8.443937 AGTTAGCGTAGATCAGAAAAATTCAAC 58.556 33.333 0.00 0.00 0.00 3.18
76 77 8.547967 AGTTAGCGTAGATCAGAAAAATTCAA 57.452 30.769 0.00 0.00 0.00 2.69
77 78 8.547967 AAGTTAGCGTAGATCAGAAAAATTCA 57.452 30.769 0.00 0.00 0.00 2.57
81 82 9.263538 TGTTAAAGTTAGCGTAGATCAGAAAAA 57.736 29.630 0.00 0.00 0.00 1.94
82 83 8.821147 TGTTAAAGTTAGCGTAGATCAGAAAA 57.179 30.769 0.00 0.00 0.00 2.29
83 84 7.544566 CCTGTTAAAGTTAGCGTAGATCAGAAA 59.455 37.037 0.00 0.00 0.00 2.52
84 85 7.033791 CCTGTTAAAGTTAGCGTAGATCAGAA 58.966 38.462 0.00 0.00 0.00 3.02
85 86 6.561614 CCTGTTAAAGTTAGCGTAGATCAGA 58.438 40.000 0.00 0.00 0.00 3.27
86 87 5.232414 GCCTGTTAAAGTTAGCGTAGATCAG 59.768 44.000 0.00 0.00 0.00 2.90
87 88 5.107133 GCCTGTTAAAGTTAGCGTAGATCA 58.893 41.667 0.00 0.00 0.00 2.92
88 89 4.206609 CGCCTGTTAAAGTTAGCGTAGATC 59.793 45.833 0.00 0.00 38.81 2.75
89 90 4.110482 CGCCTGTTAAAGTTAGCGTAGAT 58.890 43.478 0.00 0.00 38.81 1.98
90 91 3.191162 TCGCCTGTTAAAGTTAGCGTAGA 59.809 43.478 0.00 0.00 43.73 2.59
91 92 3.504863 TCGCCTGTTAAAGTTAGCGTAG 58.495 45.455 0.00 0.00 43.73 3.51
92 93 3.574284 TCGCCTGTTAAAGTTAGCGTA 57.426 42.857 0.00 0.00 43.73 4.42
93 94 2.443887 TCGCCTGTTAAAGTTAGCGT 57.556 45.000 0.00 0.00 43.73 5.07
94 95 3.369756 TCAATCGCCTGTTAAAGTTAGCG 59.630 43.478 0.00 0.00 44.61 4.26
95 96 4.939509 TCAATCGCCTGTTAAAGTTAGC 57.060 40.909 0.00 0.00 0.00 3.09
96 97 6.422776 ACATCAATCGCCTGTTAAAGTTAG 57.577 37.500 0.00 0.00 0.00 2.34
97 98 6.653320 AGAACATCAATCGCCTGTTAAAGTTA 59.347 34.615 0.00 0.00 33.46 2.24
98 99 5.473504 AGAACATCAATCGCCTGTTAAAGTT 59.526 36.000 0.00 0.00 33.46 2.66
99 100 5.003804 AGAACATCAATCGCCTGTTAAAGT 58.996 37.500 0.00 0.00 33.46 2.66
100 101 5.327091 CAGAACATCAATCGCCTGTTAAAG 58.673 41.667 0.00 0.00 33.46 1.85
101 102 4.155826 CCAGAACATCAATCGCCTGTTAAA 59.844 41.667 0.00 0.00 33.46 1.52
102 103 3.689161 CCAGAACATCAATCGCCTGTTAA 59.311 43.478 0.00 0.00 33.46 2.01
103 104 3.270027 CCAGAACATCAATCGCCTGTTA 58.730 45.455 0.00 0.00 33.46 2.41
104 105 2.086869 CCAGAACATCAATCGCCTGTT 58.913 47.619 0.00 0.00 35.89 3.16
105 106 1.003580 ACCAGAACATCAATCGCCTGT 59.996 47.619 0.00 0.00 0.00 4.00
106 107 1.399440 CACCAGAACATCAATCGCCTG 59.601 52.381 0.00 0.00 0.00 4.85
107 108 1.003580 ACACCAGAACATCAATCGCCT 59.996 47.619 0.00 0.00 0.00 5.52
108 109 1.131126 CACACCAGAACATCAATCGCC 59.869 52.381 0.00 0.00 0.00 5.54
109 110 1.466360 GCACACCAGAACATCAATCGC 60.466 52.381 0.00 0.00 0.00 4.58
110 111 2.079158 AGCACACCAGAACATCAATCG 58.921 47.619 0.00 0.00 0.00 3.34
111 112 4.256920 ACTAGCACACCAGAACATCAATC 58.743 43.478 0.00 0.00 0.00 2.67
112 113 4.256920 GACTAGCACACCAGAACATCAAT 58.743 43.478 0.00 0.00 0.00 2.57
113 114 3.557054 GGACTAGCACACCAGAACATCAA 60.557 47.826 0.00 0.00 0.00 2.57
114 115 2.028112 GGACTAGCACACCAGAACATCA 60.028 50.000 0.00 0.00 0.00 3.07
115 116 2.234908 AGGACTAGCACACCAGAACATC 59.765 50.000 0.00 0.00 0.00 3.06
116 117 2.260822 AGGACTAGCACACCAGAACAT 58.739 47.619 0.00 0.00 0.00 2.71
117 118 1.717032 AGGACTAGCACACCAGAACA 58.283 50.000 0.00 0.00 0.00 3.18
118 119 3.430929 CCATAGGACTAGCACACCAGAAC 60.431 52.174 0.00 0.00 0.00 3.01
119 120 2.766263 CCATAGGACTAGCACACCAGAA 59.234 50.000 0.00 0.00 0.00 3.02
120 121 2.388735 CCATAGGACTAGCACACCAGA 58.611 52.381 0.00 0.00 0.00 3.86
121 122 1.414181 CCCATAGGACTAGCACACCAG 59.586 57.143 0.00 0.00 33.47 4.00
122 123 1.496060 CCCATAGGACTAGCACACCA 58.504 55.000 0.00 0.00 33.47 4.17
123 124 0.759346 CCCCATAGGACTAGCACACC 59.241 60.000 0.00 0.00 38.24 4.16
124 125 0.106894 GCCCCATAGGACTAGCACAC 59.893 60.000 0.00 0.00 38.24 3.82
125 126 1.054406 GGCCCCATAGGACTAGCACA 61.054 60.000 0.00 0.00 42.61 4.57
126 127 1.755384 GGCCCCATAGGACTAGCAC 59.245 63.158 0.00 0.00 42.61 4.40
127 128 4.313523 GGCCCCATAGGACTAGCA 57.686 61.111 0.00 0.00 42.61 3.49
133 134 1.067295 CATGCTAAGGCCCCATAGGA 58.933 55.000 0.00 1.23 38.24 2.94
134 135 1.067295 TCATGCTAAGGCCCCATAGG 58.933 55.000 0.00 0.00 37.74 2.57
135 136 1.609061 CGTCATGCTAAGGCCCCATAG 60.609 57.143 0.00 0.67 37.74 2.23
136 137 0.396435 CGTCATGCTAAGGCCCCATA 59.604 55.000 0.00 0.00 37.74 2.74
137 138 1.149174 CGTCATGCTAAGGCCCCAT 59.851 57.895 0.00 0.00 37.74 4.00
138 139 1.992834 TCGTCATGCTAAGGCCCCA 60.993 57.895 0.00 0.00 37.74 4.96
139 140 1.523938 GTCGTCATGCTAAGGCCCC 60.524 63.158 0.00 0.00 37.74 5.80
140 141 0.107654 AAGTCGTCATGCTAAGGCCC 60.108 55.000 0.00 0.00 37.74 5.80
141 142 1.291132 GAAGTCGTCATGCTAAGGCC 58.709 55.000 0.00 0.00 37.74 5.19
142 143 1.291132 GGAAGTCGTCATGCTAAGGC 58.709 55.000 0.00 0.00 39.26 4.35
143 144 1.482593 AGGGAAGTCGTCATGCTAAGG 59.517 52.381 0.00 0.00 0.00 2.69
144 145 2.969628 AGGGAAGTCGTCATGCTAAG 57.030 50.000 0.00 0.00 0.00 2.18
145 146 3.130516 CAGTAGGGAAGTCGTCATGCTAA 59.869 47.826 0.00 0.00 0.00 3.09
146 147 2.688446 CAGTAGGGAAGTCGTCATGCTA 59.312 50.000 0.00 0.00 0.00 3.49
147 148 1.478510 CAGTAGGGAAGTCGTCATGCT 59.521 52.381 0.00 0.00 0.00 3.79
148 149 1.204941 ACAGTAGGGAAGTCGTCATGC 59.795 52.381 0.00 0.00 0.00 4.06
149 150 2.755655 AGACAGTAGGGAAGTCGTCATG 59.244 50.000 0.00 0.00 37.36 3.07
150 151 3.088789 AGACAGTAGGGAAGTCGTCAT 57.911 47.619 0.00 0.00 37.36 3.06
151 152 2.581216 AGACAGTAGGGAAGTCGTCA 57.419 50.000 0.00 0.00 37.36 4.35
152 153 3.608796 AGTAGACAGTAGGGAAGTCGTC 58.391 50.000 0.00 0.00 37.36 4.20
153 154 3.008813 TGAGTAGACAGTAGGGAAGTCGT 59.991 47.826 0.00 0.00 37.36 4.34
154 155 3.607741 TGAGTAGACAGTAGGGAAGTCG 58.392 50.000 0.00 0.00 37.36 4.18
155 156 4.765856 TGTTGAGTAGACAGTAGGGAAGTC 59.234 45.833 0.00 0.00 0.00 3.01
156 157 4.737578 TGTTGAGTAGACAGTAGGGAAGT 58.262 43.478 0.00 0.00 0.00 3.01
157 158 5.244178 ACTTGTTGAGTAGACAGTAGGGAAG 59.756 44.000 0.00 0.00 36.65 3.46
158 159 5.145564 ACTTGTTGAGTAGACAGTAGGGAA 58.854 41.667 0.00 0.00 36.65 3.97
159 160 4.737578 ACTTGTTGAGTAGACAGTAGGGA 58.262 43.478 0.00 0.00 36.65 4.20
160 161 5.470047 AACTTGTTGAGTAGACAGTAGGG 57.530 43.478 0.00 0.00 37.72 3.53
161 162 7.384387 GGTAAAACTTGTTGAGTAGACAGTAGG 59.616 40.741 0.00 0.00 37.72 3.18
162 163 7.384387 GGGTAAAACTTGTTGAGTAGACAGTAG 59.616 40.741 0.00 0.00 37.72 2.57
163 164 7.212274 GGGTAAAACTTGTTGAGTAGACAGTA 58.788 38.462 0.00 0.00 37.72 2.74
164 165 6.053650 GGGTAAAACTTGTTGAGTAGACAGT 58.946 40.000 0.00 0.00 37.72 3.55
165 166 5.176958 CGGGTAAAACTTGTTGAGTAGACAG 59.823 44.000 0.00 0.00 37.72 3.51
166 167 5.051816 CGGGTAAAACTTGTTGAGTAGACA 58.948 41.667 0.00 0.00 37.72 3.41
167 168 5.176406 GTCGGGTAAAACTTGTTGAGTAGAC 59.824 44.000 0.00 0.00 37.72 2.59
168 169 5.069516 AGTCGGGTAAAACTTGTTGAGTAGA 59.930 40.000 0.00 0.00 37.72 2.59
169 170 5.295152 AGTCGGGTAAAACTTGTTGAGTAG 58.705 41.667 0.00 0.00 37.72 2.57
170 171 5.280654 AGTCGGGTAAAACTTGTTGAGTA 57.719 39.130 0.00 0.00 37.72 2.59
171 172 4.124970 GAGTCGGGTAAAACTTGTTGAGT 58.875 43.478 0.00 0.00 41.47 3.41
172 173 3.497262 GGAGTCGGGTAAAACTTGTTGAG 59.503 47.826 0.00 0.00 0.00 3.02
173 174 3.469739 GGAGTCGGGTAAAACTTGTTGA 58.530 45.455 0.00 0.00 0.00 3.18
174 175 2.222445 CGGAGTCGGGTAAAACTTGTTG 59.778 50.000 0.00 0.00 0.00 3.33
175 176 2.102925 TCGGAGTCGGGTAAAACTTGTT 59.897 45.455 0.00 0.00 36.95 2.83
176 177 1.688197 TCGGAGTCGGGTAAAACTTGT 59.312 47.619 0.00 0.00 36.95 3.16
177 178 2.443887 TCGGAGTCGGGTAAAACTTG 57.556 50.000 0.00 0.00 36.95 3.16
178 179 2.564062 TCATCGGAGTCGGGTAAAACTT 59.436 45.455 0.00 0.00 36.95 2.66
179 180 2.165845 CTCATCGGAGTCGGGTAAAACT 59.834 50.000 0.00 0.00 36.36 2.66
180 181 2.537401 CTCATCGGAGTCGGGTAAAAC 58.463 52.381 0.00 0.00 36.36 2.43
181 182 1.479323 CCTCATCGGAGTCGGGTAAAA 59.521 52.381 0.00 0.00 39.64 1.52
182 183 1.108776 CCTCATCGGAGTCGGGTAAA 58.891 55.000 0.00 0.00 39.64 2.01
183 184 0.754217 CCCTCATCGGAGTCGGGTAA 60.754 60.000 0.00 0.00 39.64 2.85
184 185 1.152819 CCCTCATCGGAGTCGGGTA 60.153 63.158 0.00 0.00 39.64 3.69
185 186 2.442272 CCCTCATCGGAGTCGGGT 60.442 66.667 0.00 0.00 39.64 5.28
186 187 2.123854 TCCCTCATCGGAGTCGGG 60.124 66.667 0.00 2.75 39.64 5.14
187 188 3.437867 CTCCCTCATCGGAGTCGG 58.562 66.667 0.00 0.00 43.94 4.79
194 195 3.154473 TTCGCCCCTCCCTCATCG 61.154 66.667 0.00 0.00 0.00 3.84
195 196 1.762460 TCTTCGCCCCTCCCTCATC 60.762 63.158 0.00 0.00 0.00 2.92
196 197 2.066999 GTCTTCGCCCCTCCCTCAT 61.067 63.158 0.00 0.00 0.00 2.90
197 198 2.683933 GTCTTCGCCCCTCCCTCA 60.684 66.667 0.00 0.00 0.00 3.86
198 199 3.839432 CGTCTTCGCCCCTCCCTC 61.839 72.222 0.00 0.00 0.00 4.30
222 223 0.456312 ACTAAAGCGAGCCGAAGACG 60.456 55.000 0.00 0.00 39.43 4.18
223 224 2.159407 AGTACTAAAGCGAGCCGAAGAC 60.159 50.000 0.00 0.00 0.00 3.01
224 225 2.089980 AGTACTAAAGCGAGCCGAAGA 58.910 47.619 0.00 0.00 0.00 2.87
225 226 2.563471 AGTACTAAAGCGAGCCGAAG 57.437 50.000 0.00 0.00 0.00 3.79
226 227 2.029649 ACAAGTACTAAAGCGAGCCGAA 60.030 45.455 0.00 0.00 0.00 4.30
227 228 1.542915 ACAAGTACTAAAGCGAGCCGA 59.457 47.619 0.00 0.00 0.00 5.54
228 229 1.992170 ACAAGTACTAAAGCGAGCCG 58.008 50.000 0.00 0.00 0.00 5.52
229 230 4.104066 GACTACAAGTACTAAAGCGAGCC 58.896 47.826 0.00 0.00 0.00 4.70
230 231 3.784994 CGACTACAAGTACTAAAGCGAGC 59.215 47.826 0.00 0.00 0.00 5.03
231 232 4.967437 ACGACTACAAGTACTAAAGCGAG 58.033 43.478 0.00 0.00 0.00 5.03
232 233 5.149273 CAACGACTACAAGTACTAAAGCGA 58.851 41.667 0.00 0.00 0.00 4.93
233 234 4.201466 GCAACGACTACAAGTACTAAAGCG 60.201 45.833 0.00 5.33 0.00 4.68
234 235 4.922103 AGCAACGACTACAAGTACTAAAGC 59.078 41.667 0.00 0.00 0.00 3.51
235 236 6.746364 CCTAGCAACGACTACAAGTACTAAAG 59.254 42.308 0.00 0.00 0.00 1.85
236 237 6.207417 ACCTAGCAACGACTACAAGTACTAAA 59.793 38.462 0.00 0.00 0.00 1.85
237 238 5.707298 ACCTAGCAACGACTACAAGTACTAA 59.293 40.000 0.00 0.00 0.00 2.24
238 239 5.122869 CACCTAGCAACGACTACAAGTACTA 59.877 44.000 0.00 0.00 0.00 1.82
239 240 4.077822 ACCTAGCAACGACTACAAGTACT 58.922 43.478 0.00 0.00 0.00 2.73
240 241 4.164294 CACCTAGCAACGACTACAAGTAC 58.836 47.826 0.00 0.00 0.00 2.73
241 242 3.192001 CCACCTAGCAACGACTACAAGTA 59.808 47.826 0.00 0.00 0.00 2.24
242 243 2.029290 CCACCTAGCAACGACTACAAGT 60.029 50.000 0.00 0.00 0.00 3.16
243 244 2.029290 ACCACCTAGCAACGACTACAAG 60.029 50.000 0.00 0.00 0.00 3.16
244 245 1.965643 ACCACCTAGCAACGACTACAA 59.034 47.619 0.00 0.00 0.00 2.41
245 246 1.542915 GACCACCTAGCAACGACTACA 59.457 52.381 0.00 0.00 0.00 2.74
246 247 1.817447 AGACCACCTAGCAACGACTAC 59.183 52.381 0.00 0.00 0.00 2.73
247 248 2.211250 AGACCACCTAGCAACGACTA 57.789 50.000 0.00 0.00 0.00 2.59
248 249 1.817447 GTAGACCACCTAGCAACGACT 59.183 52.381 0.00 0.00 0.00 4.18
249 250 1.467035 CGTAGACCACCTAGCAACGAC 60.467 57.143 0.00 0.00 0.00 4.34
250 251 0.806868 CGTAGACCACCTAGCAACGA 59.193 55.000 0.00 0.00 0.00 3.85
251 252 0.179145 CCGTAGACCACCTAGCAACG 60.179 60.000 0.00 0.00 0.00 4.10
252 253 1.180029 TCCGTAGACCACCTAGCAAC 58.820 55.000 0.00 0.00 0.00 4.17
253 254 2.029623 GATCCGTAGACCACCTAGCAA 58.970 52.381 0.00 0.00 0.00 3.91
254 255 1.688772 GATCCGTAGACCACCTAGCA 58.311 55.000 0.00 0.00 0.00 3.49
255 256 0.592148 CGATCCGTAGACCACCTAGC 59.408 60.000 0.00 0.00 0.00 3.42
256 257 2.144730 CTCGATCCGTAGACCACCTAG 58.855 57.143 0.00 0.00 0.00 3.02
257 258 1.764723 TCTCGATCCGTAGACCACCTA 59.235 52.381 0.00 0.00 0.00 3.08
258 259 0.545171 TCTCGATCCGTAGACCACCT 59.455 55.000 0.00 0.00 0.00 4.00
259 260 1.267261 CATCTCGATCCGTAGACCACC 59.733 57.143 0.00 0.00 0.00 4.61
260 261 1.335142 GCATCTCGATCCGTAGACCAC 60.335 57.143 0.00 0.00 0.00 4.16
261 262 0.952280 GCATCTCGATCCGTAGACCA 59.048 55.000 0.00 0.00 0.00 4.02
262 263 0.952280 TGCATCTCGATCCGTAGACC 59.048 55.000 0.00 0.00 0.00 3.85
263 264 2.776312 TTGCATCTCGATCCGTAGAC 57.224 50.000 0.00 0.00 0.00 2.59
264 265 4.322080 AAATTGCATCTCGATCCGTAGA 57.678 40.909 0.00 0.00 0.00 2.59
265 266 5.409643 AAAAATTGCATCTCGATCCGTAG 57.590 39.130 0.00 0.00 0.00 3.51
266 267 7.490962 AATAAAAATTGCATCTCGATCCGTA 57.509 32.000 0.00 0.00 0.00 4.02
267 268 6.377327 AATAAAAATTGCATCTCGATCCGT 57.623 33.333 0.00 0.00 0.00 4.69
268 269 8.955061 AATAATAAAAATTGCATCTCGATCCG 57.045 30.769 0.00 0.00 0.00 4.18
272 273 9.734620 CCAGAAATAATAAAAATTGCATCTCGA 57.265 29.630 0.00 0.00 0.00 4.04
273 274 9.520204 ACCAGAAATAATAAAAATTGCATCTCG 57.480 29.630 0.00 0.00 0.00 4.04
287 288 8.717821 GCAATACAGCGAATACCAGAAATAATA 58.282 33.333 0.00 0.00 0.00 0.98
288 289 7.308589 GGCAATACAGCGAATACCAGAAATAAT 60.309 37.037 0.00 0.00 34.64 1.28
289 290 6.017440 GGCAATACAGCGAATACCAGAAATAA 60.017 38.462 0.00 0.00 34.64 1.40
290 291 5.468746 GGCAATACAGCGAATACCAGAAATA 59.531 40.000 0.00 0.00 34.64 1.40
291 292 4.275936 GGCAATACAGCGAATACCAGAAAT 59.724 41.667 0.00 0.00 34.64 2.17
292 293 3.625764 GGCAATACAGCGAATACCAGAAA 59.374 43.478 0.00 0.00 34.64 2.52
293 294 3.202906 GGCAATACAGCGAATACCAGAA 58.797 45.455 0.00 0.00 34.64 3.02
294 295 2.169561 TGGCAATACAGCGAATACCAGA 59.830 45.455 0.00 0.00 34.64 3.86
295 296 2.560504 TGGCAATACAGCGAATACCAG 58.439 47.619 0.00 0.00 34.64 4.00
296 297 2.700722 TGGCAATACAGCGAATACCA 57.299 45.000 0.00 0.00 34.64 3.25
297 298 3.138304 TCATGGCAATACAGCGAATACC 58.862 45.455 0.00 0.00 34.64 2.73
298 299 4.378770 CCATCATGGCAATACAGCGAATAC 60.379 45.833 0.00 0.00 34.64 1.89
299 300 3.752747 CCATCATGGCAATACAGCGAATA 59.247 43.478 0.00 0.00 34.64 1.75
300 301 2.555325 CCATCATGGCAATACAGCGAAT 59.445 45.455 0.00 0.00 34.64 3.34
301 302 1.948834 CCATCATGGCAATACAGCGAA 59.051 47.619 0.00 0.00 34.64 4.70
302 303 1.596603 CCATCATGGCAATACAGCGA 58.403 50.000 0.00 0.00 34.64 4.93
303 304 0.594602 CCCATCATGGCAATACAGCG 59.405 55.000 0.00 0.00 35.79 5.18
304 305 1.884579 CTCCCATCATGGCAATACAGC 59.115 52.381 0.00 0.00 35.79 4.40
305 306 3.497103 TCTCCCATCATGGCAATACAG 57.503 47.619 0.00 0.00 35.79 2.74
306 307 3.395273 TCATCTCCCATCATGGCAATACA 59.605 43.478 0.00 0.00 35.79 2.29
307 308 4.025040 TCATCTCCCATCATGGCAATAC 57.975 45.455 0.00 0.00 35.79 1.89
308 309 4.727792 TTCATCTCCCATCATGGCAATA 57.272 40.909 0.00 0.00 35.79 1.90
309 310 3.605726 TTCATCTCCCATCATGGCAAT 57.394 42.857 0.00 0.00 35.79 3.56
310 311 3.605726 ATTCATCTCCCATCATGGCAA 57.394 42.857 0.00 0.00 35.79 4.52
311 312 3.911894 TCTATTCATCTCCCATCATGGCA 59.088 43.478 0.00 0.00 35.79 4.92
312 313 4.564782 TCTATTCATCTCCCATCATGGC 57.435 45.455 0.00 0.00 35.79 4.40
313 314 5.128335 TCGATCTATTCATCTCCCATCATGG 59.872 44.000 0.00 0.00 37.25 3.66
314 315 6.218108 TCGATCTATTCATCTCCCATCATG 57.782 41.667 0.00 0.00 0.00 3.07
315 316 6.864151 TTCGATCTATTCATCTCCCATCAT 57.136 37.500 0.00 0.00 0.00 2.45
316 317 6.268617 ACTTTCGATCTATTCATCTCCCATCA 59.731 38.462 0.00 0.00 0.00 3.07
317 318 6.696411 ACTTTCGATCTATTCATCTCCCATC 58.304 40.000 0.00 0.00 0.00 3.51
318 319 6.678568 ACTTTCGATCTATTCATCTCCCAT 57.321 37.500 0.00 0.00 0.00 4.00
319 320 6.485830 AACTTTCGATCTATTCATCTCCCA 57.514 37.500 0.00 0.00 0.00 4.37
320 321 7.495934 TCAAAACTTTCGATCTATTCATCTCCC 59.504 37.037 0.00 0.00 0.00 4.30
321 322 8.425577 TCAAAACTTTCGATCTATTCATCTCC 57.574 34.615 0.00 0.00 0.00 3.71
322 323 9.092876 ACTCAAAACTTTCGATCTATTCATCTC 57.907 33.333 0.00 0.00 0.00 2.75
357 358 9.593134 TTGCAAAACATACTGAAAACTTGTTAT 57.407 25.926 0.00 0.00 30.76 1.89
358 359 8.988064 TTGCAAAACATACTGAAAACTTGTTA 57.012 26.923 0.00 0.00 30.76 2.41
359 360 7.897575 TTGCAAAACATACTGAAAACTTGTT 57.102 28.000 0.00 0.00 32.19 2.83
492 494 7.603784 CACTTAGCAGGGCATCTTTTTATTTTT 59.396 33.333 0.00 0.00 0.00 1.94
497 499 4.016444 CCACTTAGCAGGGCATCTTTTTA 58.984 43.478 0.00 0.00 0.00 1.52
498 500 2.827921 CCACTTAGCAGGGCATCTTTTT 59.172 45.455 0.00 0.00 0.00 1.94
536 538 4.262292 CGGATGGATTATCGGTTACTGGAA 60.262 45.833 0.00 0.00 36.62 3.53
555 558 1.851304 AACCACAATGATTGCCGGAT 58.149 45.000 18.00 6.27 32.44 4.18
556 559 1.626686 AAACCACAATGATTGCCGGA 58.373 45.000 18.00 0.00 32.44 5.14
557 560 2.067766 CAAAACCACAATGATTGCCGG 58.932 47.619 4.84 8.75 33.84 6.13
558 561 2.067766 CCAAAACCACAATGATTGCCG 58.932 47.619 4.84 0.00 0.00 5.69
603 606 0.895559 ACTTTGGTGCCTGGCTTAGC 60.896 55.000 21.03 10.73 0.00 3.09
604 607 0.883833 CACTTTGGTGCCTGGCTTAG 59.116 55.000 21.03 11.53 36.61 2.18
605 608 0.476338 TCACTTTGGTGCCTGGCTTA 59.524 50.000 21.03 3.01 42.72 3.09
616 627 2.143925 GTTTCTCCTCCGTCACTTTGG 58.856 52.381 0.00 0.00 0.00 3.28
625 636 1.001406 AGCTTGTGAGTTTCTCCTCCG 59.999 52.381 0.00 0.00 0.00 4.63
817 847 4.379143 GCGTCCGCGTTGGGTTTC 62.379 66.667 4.92 0.00 40.81 2.78
856 898 0.035458 GGGTGGATGGATGGATCGAC 59.965 60.000 0.00 0.00 32.02 4.20
868 910 1.212250 GGGGTTGTAGGTGGGTGGAT 61.212 60.000 0.00 0.00 0.00 3.41
931 973 1.449726 GCTCGGGTTTGGTTCGGTTT 61.450 55.000 0.00 0.00 0.00 3.27
933 975 2.281276 GCTCGGGTTTGGTTCGGT 60.281 61.111 0.00 0.00 0.00 4.69
955 997 3.008813 ACATGGATGTATGGATGGAGCTC 59.991 47.826 4.71 4.71 39.68 4.09
956 998 2.984604 ACATGGATGTATGGATGGAGCT 59.015 45.455 0.00 0.00 39.68 4.09
957 999 3.341823 GACATGGATGTATGGATGGAGC 58.658 50.000 0.00 0.00 41.95 4.70
992 1038 2.799412 CGAGACATTAGCATTGAGAGGC 59.201 50.000 0.00 0.00 0.00 4.70
993 1039 2.799412 GCGAGACATTAGCATTGAGAGG 59.201 50.000 0.00 0.00 0.00 3.69
994 1040 2.799412 GGCGAGACATTAGCATTGAGAG 59.201 50.000 0.00 0.00 0.00 3.20
997 1043 1.570813 CGGCGAGACATTAGCATTGA 58.429 50.000 0.00 0.00 0.00 2.57
1054 1109 4.214327 GGCGAGGAGGAAGGCGAG 62.214 72.222 0.00 0.00 0.00 5.03
1248 1312 1.153349 GAAGGGGATGTCAGCCGAC 60.153 63.158 0.00 0.00 42.93 4.79
1254 1318 1.002624 GGCGTTGAAGGGGATGTCA 60.003 57.895 0.00 0.00 0.00 3.58
1563 1627 4.025401 GCGGTGTCGTTGCCCTTG 62.025 66.667 0.00 0.00 38.89 3.61
2037 2103 1.377856 GCAAAGCCTCCCTGAGTCC 60.378 63.158 0.00 0.00 0.00 3.85
2148 2214 4.514577 CCGAGCTGGGCCGTACTG 62.515 72.222 0.21 0.00 0.00 2.74
3194 3322 1.327764 GGATCTTGTCGATGTTTCCGC 59.672 52.381 0.00 0.00 30.84 5.54
3363 3491 2.356313 ACCACGCACTCTTCGCAG 60.356 61.111 0.00 0.00 0.00 5.18
3694 3830 6.091169 CACAATTTACAGCAAACCCATTGATC 59.909 38.462 0.00 0.00 41.85 2.92
3695 3831 5.933463 CACAATTTACAGCAAACCCATTGAT 59.067 36.000 0.00 0.00 41.85 2.57
3696 3832 5.295950 CACAATTTACAGCAAACCCATTGA 58.704 37.500 0.00 0.00 41.85 2.57
3697 3833 4.451774 CCACAATTTACAGCAAACCCATTG 59.548 41.667 0.00 0.00 42.21 2.82
3748 3884 5.707298 TCTGTGGTTTCATTTCATCTTCTCC 59.293 40.000 0.00 0.00 0.00 3.71
3816 3957 5.163571 GCTCTACCTACAACCTACCAAGTAC 60.164 48.000 0.00 0.00 0.00 2.73
3817 3958 4.952335 GCTCTACCTACAACCTACCAAGTA 59.048 45.833 0.00 0.00 0.00 2.24
3818 3959 3.768215 GCTCTACCTACAACCTACCAAGT 59.232 47.826 0.00 0.00 0.00 3.16
3819 3960 4.024670 AGCTCTACCTACAACCTACCAAG 58.975 47.826 0.00 0.00 0.00 3.61
3887 4038 7.723616 CCATGTACCATATGACCCTATTTTTCA 59.276 37.037 3.65 0.00 0.00 2.69
3888 4039 7.942341 TCCATGTACCATATGACCCTATTTTTC 59.058 37.037 3.65 0.00 0.00 2.29
3894 4045 4.225042 GCATCCATGTACCATATGACCCTA 59.775 45.833 3.65 0.00 0.00 3.53
3895 4046 3.009473 GCATCCATGTACCATATGACCCT 59.991 47.826 3.65 0.00 0.00 4.34
3896 4047 3.244875 TGCATCCATGTACCATATGACCC 60.245 47.826 3.65 0.00 0.00 4.46
3897 4048 4.019792 TGCATCCATGTACCATATGACC 57.980 45.455 3.65 0.00 0.00 4.02
3898 4049 5.494724 AGATGCATCCATGTACCATATGAC 58.505 41.667 23.06 0.00 0.00 3.06
3899 4050 5.767277 AGATGCATCCATGTACCATATGA 57.233 39.130 23.06 0.00 0.00 2.15
3900 4051 9.269453 CTTATAGATGCATCCATGTACCATATG 57.731 37.037 23.06 0.00 30.96 1.78
3901 4052 8.996655 ACTTATAGATGCATCCATGTACCATAT 58.003 33.333 23.06 12.64 30.96 1.78
3902 4053 8.379428 ACTTATAGATGCATCCATGTACCATA 57.621 34.615 23.06 6.05 30.96 2.74
3963 4120 5.882557 AGCAAGGGACATTATTGTAGACTTG 59.117 40.000 16.34 16.34 40.37 3.16
3964 4121 5.882557 CAGCAAGGGACATTATTGTAGACTT 59.117 40.000 0.00 0.00 35.79 3.01
3967 4124 5.435686 ACAGCAAGGGACATTATTGTAGA 57.564 39.130 0.00 0.00 35.79 2.59
3968 4125 6.515272 AAACAGCAAGGGACATTATTGTAG 57.485 37.500 0.00 0.00 35.79 2.74
4019 4176 4.274147 TCAAGTGTTTGTACAACCACCAT 58.726 39.130 26.83 16.58 34.74 3.55
4021 4178 4.417506 GTTCAAGTGTTTGTACAACCACC 58.582 43.478 26.83 11.82 34.74 4.61
4024 4181 4.336932 GACGTTCAAGTGTTTGTACAACC 58.663 43.478 8.07 1.11 35.15 3.77
4061 4218 4.515191 CCTTTGCGTGGTACTATATGCATT 59.485 41.667 3.54 0.00 38.49 3.56
4065 4222 3.728845 AGCCTTTGCGTGGTACTATATG 58.271 45.455 0.00 0.00 44.33 1.78
4070 4227 0.249398 CCTAGCCTTTGCGTGGTACT 59.751 55.000 0.00 0.00 44.33 2.73
4071 4228 0.036671 ACCTAGCCTTTGCGTGGTAC 60.037 55.000 3.43 0.00 42.95 3.34
4075 4247 2.024176 ATACACCTAGCCTTTGCGTG 57.976 50.000 0.00 0.00 44.33 5.34
4077 4249 4.156008 AGAAAAATACACCTAGCCTTTGCG 59.844 41.667 0.00 0.00 44.33 4.85
4093 4265 8.962884 ATTTCAACTTAAGCCACAAGAAAAAT 57.037 26.923 1.29 0.00 0.00 1.82
4113 4285 9.912634 GTGTCCTTGAAATGATCTTTAATTTCA 57.087 29.630 12.51 12.51 46.06 2.69
4150 4324 3.679980 CGTTCACCTCATCAAGTTACCTG 59.320 47.826 0.00 0.00 0.00 4.00
4166 4340 3.192466 ACCACTTGTAACAGTCGTTCAC 58.808 45.455 0.00 0.00 36.52 3.18
4172 4346 7.958053 ACTAATTGTACCACTTGTAACAGTC 57.042 36.000 0.00 0.00 0.00 3.51
4194 4372 1.129058 ACCGGAGACTTCACCAAACT 58.871 50.000 9.46 0.00 0.00 2.66
4195 4373 2.685100 CTACCGGAGACTTCACCAAAC 58.315 52.381 9.46 0.00 0.00 2.93
4196 4374 1.001633 GCTACCGGAGACTTCACCAAA 59.998 52.381 9.46 0.00 0.00 3.28
4197 4375 0.606604 GCTACCGGAGACTTCACCAA 59.393 55.000 9.46 0.00 0.00 3.67
4260 4439 7.817418 ACAAAGAAATTGGTAGACTGCTTAA 57.183 32.000 0.00 0.00 43.66 1.85
4261 4440 7.817418 AACAAAGAAATTGGTAGACTGCTTA 57.183 32.000 0.00 0.00 43.66 3.09
4262 4441 6.715347 AACAAAGAAATTGGTAGACTGCTT 57.285 33.333 0.00 0.00 43.66 3.91
4264 4443 6.273071 ACAAACAAAGAAATTGGTAGACTGC 58.727 36.000 0.00 0.00 38.24 4.40
4265 4444 9.398170 CATACAAACAAAGAAATTGGTAGACTG 57.602 33.333 0.00 0.00 38.24 3.51
4266 4445 8.082242 GCATACAAACAAAGAAATTGGTAGACT 58.918 33.333 0.00 0.00 38.24 3.24
4267 4446 8.082242 AGCATACAAACAAAGAAATTGGTAGAC 58.918 33.333 0.00 0.00 38.24 2.59
4268 4447 8.081633 CAGCATACAAACAAAGAAATTGGTAGA 58.918 33.333 0.00 0.00 38.24 2.59
4269 4448 7.867403 ACAGCATACAAACAAAGAAATTGGTAG 59.133 33.333 0.00 0.00 38.24 3.18
4272 4451 6.700960 TGACAGCATACAAACAAAGAAATTGG 59.299 34.615 0.00 0.00 43.66 3.16
4273 4452 7.697352 TGACAGCATACAAACAAAGAAATTG 57.303 32.000 0.00 0.00 44.95 2.32
4285 4484 4.868171 GTCGGTATCTTTGACAGCATACAA 59.132 41.667 0.00 0.00 32.91 2.41
4290 4489 1.271379 ACGTCGGTATCTTTGACAGCA 59.729 47.619 0.00 0.00 32.91 4.41
4322 4521 7.396418 ACTGACGTGGTCCCTTTAATTTAATA 58.604 34.615 0.00 0.00 0.00 0.98
4325 4524 5.231702 ACTGACGTGGTCCCTTTAATTTA 57.768 39.130 0.00 0.00 0.00 1.40
4326 4525 4.094830 ACTGACGTGGTCCCTTTAATTT 57.905 40.909 0.00 0.00 0.00 1.82
4327 4526 3.782656 ACTGACGTGGTCCCTTTAATT 57.217 42.857 0.00 0.00 0.00 1.40
4331 4530 3.782656 AAATACTGACGTGGTCCCTTT 57.217 42.857 0.00 0.00 0.00 3.11
4334 4533 3.671716 AGAAAAATACTGACGTGGTCCC 58.328 45.455 0.00 0.00 0.00 4.46
4335 4534 4.153655 GGAAGAAAAATACTGACGTGGTCC 59.846 45.833 0.00 0.00 0.00 4.46
4338 4537 5.682943 TTGGAAGAAAAATACTGACGTGG 57.317 39.130 0.00 0.00 0.00 4.94
4339 4538 5.619607 CGTTTGGAAGAAAAATACTGACGTG 59.380 40.000 0.00 0.00 0.00 4.49
4341 4540 5.049954 TCCGTTTGGAAGAAAAATACTGACG 60.050 40.000 0.00 0.00 42.85 4.35
4342 4541 6.204108 TCTCCGTTTGGAAGAAAAATACTGAC 59.796 38.462 0.00 0.00 45.87 3.51
4343 4542 6.292923 TCTCCGTTTGGAAGAAAAATACTGA 58.707 36.000 0.00 0.00 45.87 3.41
4344 4543 6.426937 TCTCTCCGTTTGGAAGAAAAATACTG 59.573 38.462 0.00 0.00 45.87 2.74
4346 4545 6.427242 ACTCTCTCCGTTTGGAAGAAAAATAC 59.573 38.462 0.00 0.00 45.87 1.89
4347 4546 6.531021 ACTCTCTCCGTTTGGAAGAAAAATA 58.469 36.000 0.00 0.00 45.87 1.40
4348 4547 5.377478 ACTCTCTCCGTTTGGAAGAAAAAT 58.623 37.500 0.00 0.00 45.87 1.82
4354 4553 5.838531 ATACTACTCTCTCCGTTTGGAAG 57.161 43.478 0.00 0.00 45.87 3.46
4355 4554 6.600882 AAATACTACTCTCTCCGTTTGGAA 57.399 37.500 0.00 0.00 45.87 3.53
4357 4556 5.581085 CCAAAATACTACTCTCTCCGTTTGG 59.419 44.000 0.00 0.00 37.29 3.28
4358 4557 6.164176 ACCAAAATACTACTCTCTCCGTTTG 58.836 40.000 0.00 0.00 0.00 2.93
4362 4579 5.962433 TCAACCAAAATACTACTCTCTCCG 58.038 41.667 0.00 0.00 0.00 4.63
4381 4623 6.490566 ACCGGTCAAATTACAACTATCAAC 57.509 37.500 0.00 0.00 0.00 3.18
4439 4694 3.052082 CTCTGGCAGTTGGGTGCG 61.052 66.667 15.27 0.00 45.00 5.34
4443 4698 2.514458 ATTAACCTCTGGCAGTTGGG 57.486 50.000 24.63 21.05 0.00 4.12
4449 4704 4.487714 CCAGTCTAATTAACCTCTGGCA 57.512 45.455 10.04 0.00 36.51 4.92
4451 4706 4.080863 ACTGCCAGTCTAATTAACCTCTGG 60.081 45.833 14.91 14.91 43.41 3.86
4453 4708 4.080863 CCACTGCCAGTCTAATTAACCTCT 60.081 45.833 0.00 0.00 0.00 3.69
4454 4709 4.192317 CCACTGCCAGTCTAATTAACCTC 58.808 47.826 0.00 0.00 0.00 3.85
4465 4720 3.874392 AATAAAATGCCACTGCCAGTC 57.126 42.857 0.00 0.00 36.33 3.51
4467 4722 3.491447 GCCTAATAAAATGCCACTGCCAG 60.491 47.826 0.00 0.00 36.33 4.85
4468 4723 2.430332 GCCTAATAAAATGCCACTGCCA 59.570 45.455 0.00 0.00 36.33 4.92
4469 4724 2.430332 TGCCTAATAAAATGCCACTGCC 59.570 45.455 0.00 0.00 36.33 4.85
4471 4726 5.070770 TGTTGCCTAATAAAATGCCACTG 57.929 39.130 0.00 0.00 0.00 3.66
4472 4727 5.736951 TTGTTGCCTAATAAAATGCCACT 57.263 34.783 0.00 0.00 0.00 4.00
4473 4728 5.294060 CCATTGTTGCCTAATAAAATGCCAC 59.706 40.000 0.00 0.00 0.00 5.01
4514 4910 3.988976 TGCCTTTCTCTACAGCAGAAT 57.011 42.857 0.00 0.00 31.12 2.40
4581 4985 0.393537 CCTCTCCACATCCTTGGTGC 60.394 60.000 0.00 0.00 37.93 5.01
4593 4997 0.341258 ATCCAGCTTCTCCCTCTCCA 59.659 55.000 0.00 0.00 0.00 3.86
4596 5000 1.274069 TGGAATCCAGCTTCTCCCTCT 60.274 52.381 0.00 0.00 0.00 3.69
4652 5056 5.280419 GGTGGAAATGGAAATGGAAATGGAA 60.280 40.000 0.00 0.00 0.00 3.53
4653 5057 4.224818 GGTGGAAATGGAAATGGAAATGGA 59.775 41.667 0.00 0.00 0.00 3.41
4654 5058 4.516323 GGTGGAAATGGAAATGGAAATGG 58.484 43.478 0.00 0.00 0.00 3.16
4655 5059 4.019501 TGGGTGGAAATGGAAATGGAAATG 60.020 41.667 0.00 0.00 0.00 2.32
4656 5060 4.174383 TGGGTGGAAATGGAAATGGAAAT 58.826 39.130 0.00 0.00 0.00 2.17
4657 5061 3.591789 TGGGTGGAAATGGAAATGGAAA 58.408 40.909 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.