Multiple sequence alignment - TraesCS7D01G318500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G318500 chr7D 100.000 3179 0 0 1 3179 406902411 406899233 0.000000e+00 5871.0
1 TraesCS7D01G318500 chr7D 96.720 1128 37 0 979 2106 88150802 88151929 0.000000e+00 1879.0
2 TraesCS7D01G318500 chr7D 95.229 524 24 1 2209 2732 88167395 88167917 0.000000e+00 828.0
3 TraesCS7D01G318500 chr7D 92.056 214 16 1 707 920 88150570 88150782 1.850000e-77 300.0
4 TraesCS7D01G318500 chr7D 91.176 102 5 4 189 289 406902084 406901986 5.530000e-28 135.0
5 TraesCS7D01G318500 chr7D 91.176 102 5 4 328 426 406902223 406902123 5.530000e-28 135.0
6 TraesCS7D01G318500 chr7D 97.436 78 2 0 2133 2210 88151926 88152003 1.990000e-27 134.0
7 TraesCS7D01G318500 chr2D 97.225 2018 51 2 714 2727 292665496 292663480 0.000000e+00 3411.0
8 TraesCS7D01G318500 chr2D 94.096 1372 55 2 730 2097 375628984 375630333 0.000000e+00 2061.0
9 TraesCS7D01G318500 chr2D 93.003 1372 54 11 730 2097 375617332 375618665 0.000000e+00 1964.0
10 TraesCS7D01G318500 chr2D 94.646 523 26 1 2209 2731 375602795 375603315 0.000000e+00 809.0
11 TraesCS7D01G318500 chr2D 94.455 523 29 0 2209 2731 375622973 375623495 0.000000e+00 806.0
12 TraesCS7D01G318500 chr2D 94.466 524 26 2 2209 2731 375634631 375635152 0.000000e+00 804.0
13 TraesCS7D01G318500 chr2D 98.529 68 1 0 2143 2210 375618662 375618729 1.550000e-23 121.0
14 TraesCS7D01G318500 chr1D 96.326 1497 53 1 716 2210 458775575 458777071 0.000000e+00 2459.0
15 TraesCS7D01G318500 chr1D 90.498 1505 106 15 706 2210 474502397 474500930 0.000000e+00 1953.0
16 TraesCS7D01G318500 chr1D 95.385 520 23 1 2209 2728 458780387 458780905 0.000000e+00 826.0
17 TraesCS7D01G318500 chr5D 96.192 1497 56 1 715 2210 423461869 423460373 0.000000e+00 2447.0
18 TraesCS7D01G318500 chr5D 95.174 518 25 0 2209 2726 423456087 423455570 0.000000e+00 819.0
19 TraesCS7D01G318500 chr6D 95.928 1498 55 3 716 2210 28026749 28025255 0.000000e+00 2423.0
20 TraesCS7D01G318500 chr6D 95.211 522 22 2 2209 2730 28006639 28006121 0.000000e+00 822.0
21 TraesCS7D01G318500 chr1A 93.200 1500 75 11 712 2210 540392680 540394153 0.000000e+00 2180.0
22 TraesCS7D01G318500 chr1A 93.424 517 25 1 2210 2726 540395905 540396412 0.000000e+00 758.0
23 TraesCS7D01G318500 chr2A 93.783 756 21 9 1455 2210 772866901 772866172 0.000000e+00 1112.0
24 TraesCS7D01G318500 chr2A 93.037 517 26 6 2209 2725 772865404 772864898 0.000000e+00 747.0
25 TraesCS7D01G318500 chr7B 90.749 681 35 9 8 684 417869943 417869287 0.000000e+00 883.0
26 TraesCS7D01G318500 chr7B 95.833 456 16 3 2727 3179 417869240 417868785 0.000000e+00 734.0
27 TraesCS7D01G318500 chr7B 92.157 102 4 4 189 289 417869625 417869527 1.190000e-29 141.0
28 TraesCS7D01G318500 chr7B 92.308 52 1 2 676 724 417869271 417869220 1.580000e-08 71.3
29 TraesCS7D01G318500 chr7A 88.331 677 44 14 19 684 464269946 464269294 0.000000e+00 780.0
30 TraesCS7D01G318500 chr7A 96.000 450 14 4 2726 3172 464269249 464268801 0.000000e+00 728.0
31 TraesCS7D01G318500 chr7A 88.421 95 8 2 193 287 464269639 464269548 9.320000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G318500 chr7D 406899233 406902411 3178 True 2047.000000 5871 94.117333 1 3179 3 chr7D.!!$R1 3178
1 TraesCS7D01G318500 chr7D 88167395 88167917 522 False 828.000000 828 95.229000 2209 2732 1 chr7D.!!$F1 523
2 TraesCS7D01G318500 chr7D 88150570 88152003 1433 False 771.000000 1879 95.404000 707 2210 3 chr7D.!!$F2 1503
3 TraesCS7D01G318500 chr2D 292663480 292665496 2016 True 3411.000000 3411 97.225000 714 2727 1 chr2D.!!$R1 2013
4 TraesCS7D01G318500 chr2D 375628984 375630333 1349 False 2061.000000 2061 94.096000 730 2097 1 chr2D.!!$F3 1367
5 TraesCS7D01G318500 chr2D 375617332 375618729 1397 False 1042.500000 1964 95.766000 730 2210 2 chr2D.!!$F5 1480
6 TraesCS7D01G318500 chr2D 375602795 375603315 520 False 809.000000 809 94.646000 2209 2731 1 chr2D.!!$F1 522
7 TraesCS7D01G318500 chr2D 375622973 375623495 522 False 806.000000 806 94.455000 2209 2731 1 chr2D.!!$F2 522
8 TraesCS7D01G318500 chr2D 375634631 375635152 521 False 804.000000 804 94.466000 2209 2731 1 chr2D.!!$F4 522
9 TraesCS7D01G318500 chr1D 474500930 474502397 1467 True 1953.000000 1953 90.498000 706 2210 1 chr1D.!!$R1 1504
10 TraesCS7D01G318500 chr1D 458775575 458780905 5330 False 1642.500000 2459 95.855500 716 2728 2 chr1D.!!$F1 2012
11 TraesCS7D01G318500 chr5D 423460373 423461869 1496 True 2447.000000 2447 96.192000 715 2210 1 chr5D.!!$R2 1495
12 TraesCS7D01G318500 chr5D 423455570 423456087 517 True 819.000000 819 95.174000 2209 2726 1 chr5D.!!$R1 517
13 TraesCS7D01G318500 chr6D 28025255 28026749 1494 True 2423.000000 2423 95.928000 716 2210 1 chr6D.!!$R2 1494
14 TraesCS7D01G318500 chr6D 28006121 28006639 518 True 822.000000 822 95.211000 2209 2730 1 chr6D.!!$R1 521
15 TraesCS7D01G318500 chr1A 540392680 540396412 3732 False 1469.000000 2180 93.312000 712 2726 2 chr1A.!!$F1 2014
16 TraesCS7D01G318500 chr2A 772864898 772866901 2003 True 929.500000 1112 93.410000 1455 2725 2 chr2A.!!$R1 1270
17 TraesCS7D01G318500 chr7B 417868785 417869943 1158 True 457.325000 883 92.761750 8 3179 4 chr7B.!!$R1 3171
18 TraesCS7D01G318500 chr7A 464268801 464269946 1145 True 539.666667 780 90.917333 19 3172 3 chr7A.!!$R1 3153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 688 0.036388 ACTCCGACAAATGATGCGGT 60.036 50.0 0.0 0.0 44.13 5.68 F
899 910 0.042581 TGGCCCACTGTCAGGATCTA 59.957 55.0 0.0 0.0 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2071 0.322277 CCTGAACAGAGCACCTGCAT 60.322 55.0 3.19 0.0 46.81 3.96 R
2249 5689 1.233285 CGCTGGTGCTGAGCTTCTTT 61.233 55.0 5.83 0.0 36.97 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 4.115516 TCTCGTTTTCATATCTGAGCAGC 58.884 43.478 0.00 0.00 31.68 5.25
205 214 3.774702 GGACAAACTCGCCGCGAC 61.775 66.667 12.39 0.00 0.00 5.19
206 215 4.117372 GACAAACTCGCCGCGACG 62.117 66.667 12.39 9.05 0.00 5.12
258 268 4.315803 ACGACGAAATTTCTCCTGACAAT 58.684 39.130 15.92 0.00 0.00 2.71
397 408 4.752101 AGACAACGAAATTTCTCCTGACAG 59.248 41.667 15.92 0.00 0.00 3.51
414 425 7.158021 TCCTGACAGTTGTTTTGTTTCAAAAT 58.842 30.769 10.15 0.00 0.00 1.82
430 441 7.860373 TGTTTCAAAATAGAGGTGACAAAATCG 59.140 33.333 0.00 0.00 0.00 3.34
438 449 2.517650 GTGACAAAATCGCCCCAAAA 57.482 45.000 0.00 0.00 0.00 2.44
439 450 2.827652 GTGACAAAATCGCCCCAAAAA 58.172 42.857 0.00 0.00 0.00 1.94
462 473 7.775053 AAAATTGCCAAAGTTATGTCTAGGA 57.225 32.000 0.00 0.00 0.00 2.94
463 474 6.759497 AATTGCCAAAGTTATGTCTAGGAC 57.241 37.500 0.00 0.00 0.00 3.85
464 475 5.499004 TTGCCAAAGTTATGTCTAGGACT 57.501 39.130 0.00 0.00 33.15 3.85
465 476 5.499004 TGCCAAAGTTATGTCTAGGACTT 57.501 39.130 0.00 0.00 34.03 3.01
466 477 5.488341 TGCCAAAGTTATGTCTAGGACTTC 58.512 41.667 0.00 0.00 31.57 3.01
467 478 5.248477 TGCCAAAGTTATGTCTAGGACTTCT 59.752 40.000 0.00 0.00 31.57 2.85
468 479 6.439375 TGCCAAAGTTATGTCTAGGACTTCTA 59.561 38.462 0.00 0.00 31.57 2.10
469 480 6.757478 GCCAAAGTTATGTCTAGGACTTCTAC 59.243 42.308 0.00 0.00 31.57 2.59
470 481 7.578955 GCCAAAGTTATGTCTAGGACTTCTACA 60.579 40.741 0.00 0.00 31.57 2.74
471 482 8.311836 CCAAAGTTATGTCTAGGACTTCTACAA 58.688 37.037 0.00 0.00 31.57 2.41
472 483 9.360093 CAAAGTTATGTCTAGGACTTCTACAAG 57.640 37.037 0.00 0.00 31.57 3.16
473 484 7.648039 AGTTATGTCTAGGACTTCTACAAGG 57.352 40.000 0.00 0.00 33.37 3.61
474 485 7.411808 AGTTATGTCTAGGACTTCTACAAGGA 58.588 38.462 0.00 0.00 33.37 3.36
475 486 7.339976 AGTTATGTCTAGGACTTCTACAAGGAC 59.660 40.741 0.00 0.00 33.37 3.85
476 487 4.994282 TGTCTAGGACTTCTACAAGGACA 58.006 43.478 0.00 0.00 33.37 4.02
477 488 5.391256 TGTCTAGGACTTCTACAAGGACAA 58.609 41.667 0.00 0.00 31.04 3.18
478 489 5.836898 TGTCTAGGACTTCTACAAGGACAAA 59.163 40.000 0.00 0.00 31.04 2.83
479 490 6.325545 TGTCTAGGACTTCTACAAGGACAAAA 59.674 38.462 0.00 0.00 31.04 2.44
480 491 7.016268 TGTCTAGGACTTCTACAAGGACAAAAT 59.984 37.037 0.00 0.00 31.04 1.82
481 492 7.332182 GTCTAGGACTTCTACAAGGACAAAATG 59.668 40.741 0.00 0.00 33.37 2.32
482 493 4.762251 AGGACTTCTACAAGGACAAAATGC 59.238 41.667 0.00 0.00 33.37 3.56
483 494 4.762251 GGACTTCTACAAGGACAAAATGCT 59.238 41.667 0.00 0.00 33.37 3.79
484 495 5.335191 GGACTTCTACAAGGACAAAATGCTG 60.335 44.000 0.00 0.00 33.37 4.41
485 496 4.520492 ACTTCTACAAGGACAAAATGCTGG 59.480 41.667 0.00 0.00 33.37 4.85
486 497 4.365514 TCTACAAGGACAAAATGCTGGA 57.634 40.909 0.00 0.00 0.00 3.86
487 498 4.724399 TCTACAAGGACAAAATGCTGGAA 58.276 39.130 0.00 0.00 0.00 3.53
488 499 4.761739 TCTACAAGGACAAAATGCTGGAAG 59.238 41.667 0.00 0.00 0.00 3.46
489 500 3.565307 ACAAGGACAAAATGCTGGAAGA 58.435 40.909 0.00 0.00 34.07 2.87
490 501 3.960102 ACAAGGACAAAATGCTGGAAGAA 59.040 39.130 0.00 0.00 34.07 2.52
491 502 4.405358 ACAAGGACAAAATGCTGGAAGAAA 59.595 37.500 0.00 0.00 34.07 2.52
492 503 5.104982 ACAAGGACAAAATGCTGGAAGAAAA 60.105 36.000 0.00 0.00 34.07 2.29
493 504 5.612725 AGGACAAAATGCTGGAAGAAAAA 57.387 34.783 0.00 0.00 34.07 1.94
494 505 6.178607 AGGACAAAATGCTGGAAGAAAAAT 57.821 33.333 0.00 0.00 34.07 1.82
495 506 6.226052 AGGACAAAATGCTGGAAGAAAAATC 58.774 36.000 0.00 0.00 34.07 2.17
496 507 5.990996 GGACAAAATGCTGGAAGAAAAATCA 59.009 36.000 0.00 0.00 34.07 2.57
497 508 6.146673 GGACAAAATGCTGGAAGAAAAATCAG 59.853 38.462 0.00 0.00 34.07 2.90
522 533 2.290847 TTTTTGCTTGTGTGGGCCA 58.709 47.368 0.00 0.00 0.00 5.36
523 534 0.835941 TTTTTGCTTGTGTGGGCCAT 59.164 45.000 10.70 0.00 0.00 4.40
524 535 0.106335 TTTTGCTTGTGTGGGCCATG 59.894 50.000 10.70 0.00 0.00 3.66
525 536 1.756408 TTTGCTTGTGTGGGCCATGG 61.756 55.000 10.70 7.63 0.00 3.66
526 537 3.384532 GCTTGTGTGGGCCATGGG 61.385 66.667 10.70 0.00 0.00 4.00
527 538 2.681064 CTTGTGTGGGCCATGGGG 60.681 66.667 10.70 0.00 37.18 4.96
528 539 4.313707 TTGTGTGGGCCATGGGGG 62.314 66.667 10.70 0.00 40.85 5.40
532 543 3.991318 GTGGGCCATGGGGGTGAA 61.991 66.667 10.70 0.00 39.65 3.18
533 544 3.671410 TGGGCCATGGGGGTGAAG 61.671 66.667 15.13 0.00 39.65 3.02
534 545 3.346734 GGGCCATGGGGGTGAAGA 61.347 66.667 15.13 0.00 39.65 2.87
535 546 2.770130 GGCCATGGGGGTGAAGAA 59.230 61.111 15.13 0.00 39.65 2.52
536 547 1.078347 GGCCATGGGGGTGAAGAAA 59.922 57.895 15.13 0.00 39.65 2.52
537 548 0.325577 GGCCATGGGGGTGAAGAAAT 60.326 55.000 15.13 0.00 39.65 2.17
538 549 1.571955 GCCATGGGGGTGAAGAAATT 58.428 50.000 15.13 0.00 39.65 1.82
539 550 2.625617 GGCCATGGGGGTGAAGAAATTA 60.626 50.000 15.13 0.00 39.65 1.40
540 551 3.103742 GCCATGGGGGTGAAGAAATTAA 58.896 45.455 15.13 0.00 39.65 1.40
541 552 3.132824 GCCATGGGGGTGAAGAAATTAAG 59.867 47.826 15.13 0.00 39.65 1.85
542 553 4.609301 CCATGGGGGTGAAGAAATTAAGA 58.391 43.478 2.85 0.00 0.00 2.10
543 554 4.402474 CCATGGGGGTGAAGAAATTAAGAC 59.598 45.833 2.85 0.00 0.00 3.01
544 555 4.733077 TGGGGGTGAAGAAATTAAGACA 57.267 40.909 0.00 0.00 0.00 3.41
545 556 4.403734 TGGGGGTGAAGAAATTAAGACAC 58.596 43.478 0.00 0.00 0.00 3.67
546 557 3.762288 GGGGGTGAAGAAATTAAGACACC 59.238 47.826 0.00 0.00 44.50 4.16
547 558 4.508584 GGGGGTGAAGAAATTAAGACACCT 60.509 45.833 17.75 0.00 44.59 4.00
548 559 5.077564 GGGGTGAAGAAATTAAGACACCTT 58.922 41.667 17.75 0.00 44.59 3.50
549 560 5.183331 GGGGTGAAGAAATTAAGACACCTTC 59.817 44.000 17.75 0.00 44.59 3.46
550 561 5.183331 GGGTGAAGAAATTAAGACACCTTCC 59.817 44.000 17.75 5.11 44.59 3.46
551 562 5.768164 GGTGAAGAAATTAAGACACCTTCCA 59.232 40.000 0.00 0.00 42.73 3.53
552 563 6.264518 GGTGAAGAAATTAAGACACCTTCCAA 59.735 38.462 0.00 0.00 42.73 3.53
553 564 7.363431 GTGAAGAAATTAAGACACCTTCCAAG 58.637 38.462 0.00 0.00 33.94 3.61
554 565 7.013369 GTGAAGAAATTAAGACACCTTCCAAGT 59.987 37.037 0.00 0.00 33.94 3.16
555 566 7.228706 TGAAGAAATTAAGACACCTTCCAAGTC 59.771 37.037 0.00 0.00 33.94 3.01
556 567 6.842676 AGAAATTAAGACACCTTCCAAGTCT 58.157 36.000 0.00 0.00 43.98 3.24
557 568 6.712547 AGAAATTAAGACACCTTCCAAGTCTG 59.287 38.462 0.00 0.00 41.45 3.51
558 569 2.938956 AAGACACCTTCCAAGTCTGG 57.061 50.000 0.00 0.00 41.45 3.86
559 570 1.807814 AGACACCTTCCAAGTCTGGT 58.192 50.000 0.00 0.00 43.97 4.00
560 571 2.972348 AGACACCTTCCAAGTCTGGTA 58.028 47.619 0.00 0.00 43.97 3.25
561 572 3.521727 AGACACCTTCCAAGTCTGGTAT 58.478 45.455 0.00 0.00 43.97 2.73
562 573 3.261897 AGACACCTTCCAAGTCTGGTATG 59.738 47.826 0.00 0.00 43.97 2.39
563 574 3.248024 ACACCTTCCAAGTCTGGTATGA 58.752 45.455 0.00 0.00 43.97 2.15
564 575 3.846588 ACACCTTCCAAGTCTGGTATGAT 59.153 43.478 0.00 0.00 43.97 2.45
565 576 4.194640 CACCTTCCAAGTCTGGTATGATG 58.805 47.826 0.00 0.00 43.97 3.07
566 577 4.080919 CACCTTCCAAGTCTGGTATGATGA 60.081 45.833 0.00 0.00 43.97 2.92
567 578 4.536090 ACCTTCCAAGTCTGGTATGATGAA 59.464 41.667 0.00 0.00 43.97 2.57
568 579 5.192522 ACCTTCCAAGTCTGGTATGATGAAT 59.807 40.000 0.00 0.00 43.97 2.57
569 580 5.530171 CCTTCCAAGTCTGGTATGATGAATG 59.470 44.000 0.00 0.00 43.97 2.67
570 581 5.698741 TCCAAGTCTGGTATGATGAATGT 57.301 39.130 0.00 0.00 43.97 2.71
571 582 5.674525 TCCAAGTCTGGTATGATGAATGTC 58.325 41.667 0.00 0.00 43.97 3.06
572 583 4.818546 CCAAGTCTGGTATGATGAATGTCC 59.181 45.833 0.00 0.00 38.00 4.02
573 584 5.430886 CAAGTCTGGTATGATGAATGTCCA 58.569 41.667 0.00 0.00 0.00 4.02
574 585 5.287674 AGTCTGGTATGATGAATGTCCAG 57.712 43.478 0.00 0.00 40.27 3.86
575 586 4.964897 AGTCTGGTATGATGAATGTCCAGA 59.035 41.667 7.50 7.50 42.81 3.86
576 587 5.426509 AGTCTGGTATGATGAATGTCCAGAA 59.573 40.000 12.30 0.00 44.60 3.02
577 588 5.757320 GTCTGGTATGATGAATGTCCAGAAG 59.243 44.000 12.30 0.00 44.60 2.85
578 589 4.454678 TGGTATGATGAATGTCCAGAAGC 58.545 43.478 0.00 0.00 0.00 3.86
579 590 4.080413 TGGTATGATGAATGTCCAGAAGCA 60.080 41.667 0.00 0.00 0.00 3.91
580 591 4.514441 GGTATGATGAATGTCCAGAAGCAG 59.486 45.833 0.00 0.00 0.00 4.24
581 592 2.362736 TGATGAATGTCCAGAAGCAGC 58.637 47.619 0.00 0.00 0.00 5.25
582 593 2.290450 TGATGAATGTCCAGAAGCAGCA 60.290 45.455 0.00 0.00 0.00 4.41
583 594 2.502142 TGAATGTCCAGAAGCAGCAT 57.498 45.000 0.00 0.00 0.00 3.79
584 595 2.799017 TGAATGTCCAGAAGCAGCATT 58.201 42.857 0.00 0.00 33.14 3.56
585 596 3.159472 TGAATGTCCAGAAGCAGCATTT 58.841 40.909 0.00 0.00 30.96 2.32
586 597 3.192001 TGAATGTCCAGAAGCAGCATTTC 59.808 43.478 0.00 0.00 30.96 2.17
587 598 2.275134 TGTCCAGAAGCAGCATTTCA 57.725 45.000 0.00 0.00 0.00 2.69
588 599 2.585330 TGTCCAGAAGCAGCATTTCAA 58.415 42.857 0.00 0.00 0.00 2.69
589 600 2.294233 TGTCCAGAAGCAGCATTTCAAC 59.706 45.455 0.00 0.00 0.00 3.18
590 601 2.555757 GTCCAGAAGCAGCATTTCAACT 59.444 45.455 0.00 0.00 0.00 3.16
591 602 2.555325 TCCAGAAGCAGCATTTCAACTG 59.445 45.455 0.00 0.00 36.96 3.16
599 610 4.233123 CAGCATTTCAACTGCAAGAAGA 57.767 40.909 2.17 0.00 42.15 2.87
600 611 4.227538 CAGCATTTCAACTGCAAGAAGAG 58.772 43.478 2.17 0.00 42.15 2.85
601 612 3.887716 AGCATTTCAACTGCAAGAAGAGT 59.112 39.130 2.17 0.00 42.15 3.24
602 613 4.023365 AGCATTTCAACTGCAAGAAGAGTC 60.023 41.667 2.17 0.00 42.15 3.36
603 614 4.023365 GCATTTCAACTGCAAGAAGAGTCT 60.023 41.667 0.00 0.00 39.46 3.24
604 615 5.450171 CATTTCAACTGCAAGAAGAGTCTG 58.550 41.667 0.00 0.00 37.43 3.51
605 616 3.117491 TCAACTGCAAGAAGAGTCTGG 57.883 47.619 0.00 0.00 37.43 3.86
606 617 2.435805 TCAACTGCAAGAAGAGTCTGGT 59.564 45.455 0.00 0.00 37.43 4.00
607 618 3.118261 TCAACTGCAAGAAGAGTCTGGTT 60.118 43.478 0.00 0.00 37.43 3.67
608 619 3.118905 ACTGCAAGAAGAGTCTGGTTC 57.881 47.619 0.00 0.00 37.43 3.62
609 620 2.435805 ACTGCAAGAAGAGTCTGGTTCA 59.564 45.455 0.00 0.00 37.43 3.18
610 621 3.065655 CTGCAAGAAGAGTCTGGTTCAG 58.934 50.000 0.00 0.00 34.07 3.02
611 622 2.435805 TGCAAGAAGAGTCTGGTTCAGT 59.564 45.455 0.00 0.00 33.05 3.41
612 623 2.805099 GCAAGAAGAGTCTGGTTCAGTG 59.195 50.000 0.00 0.00 33.05 3.66
613 624 3.742640 GCAAGAAGAGTCTGGTTCAGTGT 60.743 47.826 0.00 0.00 33.05 3.55
614 625 4.501571 GCAAGAAGAGTCTGGTTCAGTGTA 60.502 45.833 0.00 0.00 33.05 2.90
615 626 4.857509 AGAAGAGTCTGGTTCAGTGTAC 57.142 45.455 0.00 0.00 30.83 2.90
616 627 4.215908 AGAAGAGTCTGGTTCAGTGTACA 58.784 43.478 2.12 0.00 30.83 2.90
617 628 4.835615 AGAAGAGTCTGGTTCAGTGTACAT 59.164 41.667 0.00 0.00 30.83 2.29
618 629 4.527509 AGAGTCTGGTTCAGTGTACATG 57.472 45.455 0.00 0.00 32.61 3.21
619 630 3.259374 AGAGTCTGGTTCAGTGTACATGG 59.741 47.826 0.00 0.00 32.61 3.66
620 631 2.076863 GTCTGGTTCAGTGTACATGGC 58.923 52.381 0.00 0.00 32.61 4.40
621 632 1.003118 TCTGGTTCAGTGTACATGGCC 59.997 52.381 0.00 0.00 32.61 5.36
622 633 1.003580 CTGGTTCAGTGTACATGGCCT 59.996 52.381 3.32 0.00 0.00 5.19
623 634 1.003118 TGGTTCAGTGTACATGGCCTC 59.997 52.381 3.32 0.00 0.00 4.70
624 635 1.003118 GGTTCAGTGTACATGGCCTCA 59.997 52.381 3.32 0.00 0.00 3.86
625 636 2.552155 GGTTCAGTGTACATGGCCTCAA 60.552 50.000 3.32 0.00 0.00 3.02
626 637 2.472695 TCAGTGTACATGGCCTCAAC 57.527 50.000 3.32 0.00 0.00 3.18
627 638 1.696884 TCAGTGTACATGGCCTCAACA 59.303 47.619 3.32 0.00 0.00 3.33
628 639 1.806542 CAGTGTACATGGCCTCAACAC 59.193 52.381 17.86 17.86 40.53 3.32
629 640 1.165270 GTGTACATGGCCTCAACACC 58.835 55.000 15.85 3.77 35.52 4.16
630 641 1.064003 TGTACATGGCCTCAACACCT 58.936 50.000 3.32 0.00 0.00 4.00
631 642 1.423541 TGTACATGGCCTCAACACCTT 59.576 47.619 3.32 0.00 0.00 3.50
632 643 2.158534 TGTACATGGCCTCAACACCTTT 60.159 45.455 3.32 0.00 0.00 3.11
633 644 2.086610 ACATGGCCTCAACACCTTTT 57.913 45.000 3.32 0.00 0.00 2.27
634 645 2.397597 ACATGGCCTCAACACCTTTTT 58.602 42.857 3.32 0.00 0.00 1.94
635 646 2.365293 ACATGGCCTCAACACCTTTTTC 59.635 45.455 3.32 0.00 0.00 2.29
636 647 2.452600 TGGCCTCAACACCTTTTTCT 57.547 45.000 3.32 0.00 0.00 2.52
637 648 2.031120 TGGCCTCAACACCTTTTTCTG 58.969 47.619 3.32 0.00 0.00 3.02
638 649 1.269778 GGCCTCAACACCTTTTTCTGC 60.270 52.381 0.00 0.00 0.00 4.26
639 650 1.269778 GCCTCAACACCTTTTTCTGCC 60.270 52.381 0.00 0.00 0.00 4.85
640 651 2.031120 CCTCAACACCTTTTTCTGCCA 58.969 47.619 0.00 0.00 0.00 4.92
641 652 2.430332 CCTCAACACCTTTTTCTGCCAA 59.570 45.455 0.00 0.00 0.00 4.52
642 653 3.491447 CCTCAACACCTTTTTCTGCCAAG 60.491 47.826 0.00 0.00 0.00 3.61
643 654 3.360867 TCAACACCTTTTTCTGCCAAGA 58.639 40.909 0.00 0.00 0.00 3.02
644 655 3.766591 TCAACACCTTTTTCTGCCAAGAA 59.233 39.130 0.00 0.00 40.76 2.52
645 656 4.114794 CAACACCTTTTTCTGCCAAGAAG 58.885 43.478 0.00 0.00 43.27 2.85
646 657 3.365472 ACACCTTTTTCTGCCAAGAAGT 58.635 40.909 0.00 0.00 43.27 3.01
647 658 4.532834 ACACCTTTTTCTGCCAAGAAGTA 58.467 39.130 0.00 0.00 43.27 2.24
648 659 4.338400 ACACCTTTTTCTGCCAAGAAGTAC 59.662 41.667 0.00 0.00 43.27 2.73
649 660 4.580580 CACCTTTTTCTGCCAAGAAGTACT 59.419 41.667 0.00 0.00 43.27 2.73
650 661 5.067805 CACCTTTTTCTGCCAAGAAGTACTT 59.932 40.000 8.13 8.13 43.27 2.24
664 675 6.585695 AGAAGTACTTGTATTGAACTCCGA 57.414 37.500 14.14 0.00 0.00 4.55
665 676 6.388278 AGAAGTACTTGTATTGAACTCCGAC 58.612 40.000 14.14 0.00 0.00 4.79
666 677 5.717078 AGTACTTGTATTGAACTCCGACA 57.283 39.130 0.00 0.00 0.00 4.35
667 678 6.092955 AGTACTTGTATTGAACTCCGACAA 57.907 37.500 0.00 0.00 0.00 3.18
668 679 6.518493 AGTACTTGTATTGAACTCCGACAAA 58.482 36.000 0.00 0.00 30.14 2.83
669 680 7.159372 AGTACTTGTATTGAACTCCGACAAAT 58.841 34.615 0.00 0.00 30.14 2.32
670 681 6.241207 ACTTGTATTGAACTCCGACAAATG 57.759 37.500 0.00 0.00 30.14 2.32
671 682 5.995282 ACTTGTATTGAACTCCGACAAATGA 59.005 36.000 0.00 0.00 30.14 2.57
672 683 6.655003 ACTTGTATTGAACTCCGACAAATGAT 59.345 34.615 0.00 0.00 30.14 2.45
673 684 6.421377 TGTATTGAACTCCGACAAATGATG 57.579 37.500 0.00 0.00 0.00 3.07
674 685 3.829886 TTGAACTCCGACAAATGATGC 57.170 42.857 0.00 0.00 0.00 3.91
675 686 1.731709 TGAACTCCGACAAATGATGCG 59.268 47.619 0.00 0.00 0.00 4.73
676 687 1.062587 GAACTCCGACAAATGATGCGG 59.937 52.381 0.00 0.00 44.71 5.69
677 688 0.036388 ACTCCGACAAATGATGCGGT 60.036 50.000 0.00 0.00 44.13 5.68
678 689 0.374758 CTCCGACAAATGATGCGGTG 59.625 55.000 0.00 0.00 44.13 4.94
679 690 0.321210 TCCGACAAATGATGCGGTGT 60.321 50.000 0.00 0.00 44.13 4.16
680 691 1.066787 TCCGACAAATGATGCGGTGTA 60.067 47.619 0.00 0.00 44.13 2.90
681 692 1.735018 CCGACAAATGATGCGGTGTAA 59.265 47.619 0.00 0.00 41.09 2.41
682 693 2.160615 CCGACAAATGATGCGGTGTAAA 59.839 45.455 0.00 0.00 41.09 2.01
683 694 3.365465 CCGACAAATGATGCGGTGTAAAA 60.365 43.478 0.00 0.00 41.09 1.52
684 695 3.602062 CGACAAATGATGCGGTGTAAAAC 59.398 43.478 0.00 0.00 0.00 2.43
685 696 4.612712 CGACAAATGATGCGGTGTAAAACT 60.613 41.667 0.00 0.00 0.00 2.66
686 697 4.794169 ACAAATGATGCGGTGTAAAACTC 58.206 39.130 0.00 0.00 0.00 3.01
687 698 4.277174 ACAAATGATGCGGTGTAAAACTCA 59.723 37.500 0.00 0.00 0.00 3.41
688 699 4.685169 AATGATGCGGTGTAAAACTCAG 57.315 40.909 0.00 0.00 0.00 3.35
689 700 2.422597 TGATGCGGTGTAAAACTCAGG 58.577 47.619 0.00 0.00 0.00 3.86
690 701 1.130561 GATGCGGTGTAAAACTCAGGC 59.869 52.381 0.00 0.00 0.00 4.85
691 702 0.179043 TGCGGTGTAAAACTCAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
692 703 0.517316 GCGGTGTAAAACTCAGGCAG 59.483 55.000 0.00 0.00 0.00 4.85
693 704 1.878953 CGGTGTAAAACTCAGGCAGT 58.121 50.000 0.00 0.00 36.64 4.40
694 705 1.531149 CGGTGTAAAACTCAGGCAGTG 59.469 52.381 0.00 0.00 34.56 3.66
695 706 2.805295 CGGTGTAAAACTCAGGCAGTGA 60.805 50.000 0.00 0.00 34.56 3.41
696 707 3.211045 GGTGTAAAACTCAGGCAGTGAA 58.789 45.455 0.00 0.00 34.56 3.18
697 708 3.630312 GGTGTAAAACTCAGGCAGTGAAA 59.370 43.478 0.00 0.00 34.56 2.69
698 709 4.097286 GGTGTAAAACTCAGGCAGTGAAAA 59.903 41.667 0.00 0.00 34.56 2.29
699 710 5.034797 GTGTAAAACTCAGGCAGTGAAAAC 58.965 41.667 0.00 0.00 34.56 2.43
700 711 4.702612 TGTAAAACTCAGGCAGTGAAAACA 59.297 37.500 0.00 0.00 34.56 2.83
701 712 5.359576 TGTAAAACTCAGGCAGTGAAAACAT 59.640 36.000 0.00 0.00 34.56 2.71
702 713 3.996150 AACTCAGGCAGTGAAAACATG 57.004 42.857 0.00 0.00 34.56 3.21
703 714 3.213206 ACTCAGGCAGTGAAAACATGA 57.787 42.857 0.00 0.00 33.60 3.07
704 715 2.880890 ACTCAGGCAGTGAAAACATGAC 59.119 45.455 0.00 0.00 33.60 3.06
705 716 3.144506 CTCAGGCAGTGAAAACATGACT 58.855 45.455 0.00 0.00 33.60 3.41
706 717 3.554934 TCAGGCAGTGAAAACATGACTT 58.445 40.909 0.00 0.00 26.68 3.01
707 718 3.953612 TCAGGCAGTGAAAACATGACTTT 59.046 39.130 0.00 0.00 26.68 2.66
708 719 4.036734 TCAGGCAGTGAAAACATGACTTTC 59.963 41.667 0.00 8.76 34.09 2.62
709 720 3.953612 AGGCAGTGAAAACATGACTTTCA 59.046 39.130 17.88 17.88 39.79 2.69
783 794 6.545666 ACATTGGTCACACAAGTCTCAAAATA 59.454 34.615 0.00 0.00 33.23 1.40
796 807 8.655935 AAGTCTCAAAATATGGAGAATTGGTT 57.344 30.769 11.73 0.00 44.08 3.67
835 846 1.906574 AGCGAATTGGTCACTTCCCTA 59.093 47.619 0.00 0.00 0.00 3.53
839 850 4.261801 CGAATTGGTCACTTCCCTATTGT 58.738 43.478 0.00 0.00 29.38 2.71
899 910 0.042581 TGGCCCACTGTCAGGATCTA 59.957 55.000 0.00 0.00 0.00 1.98
1021 1036 1.219980 TCCTCTCTCCAGATCTGCCAT 59.780 52.381 17.76 0.00 0.00 4.40
1060 1075 0.464735 ACCTCTCTCGAGATGGACCG 60.465 60.000 29.69 14.22 39.74 4.79
1409 1424 0.457851 GCGTGCTCATCTACCACTCT 59.542 55.000 0.00 0.00 0.00 3.24
1414 1429 1.268999 GCTCATCTACCACTCTCGCAG 60.269 57.143 0.00 0.00 0.00 5.18
1655 1670 6.515862 CGTGGATGAAGAACCCAAACAAATTA 60.516 38.462 0.00 0.00 0.00 1.40
1694 1769 2.576298 GCTGCCAGAGCCTGAATTT 58.424 52.632 0.00 0.00 42.54 1.82
1785 1864 6.096141 TGAGAAGCCAACAGTTGTTCATTTTA 59.904 34.615 12.42 0.00 35.83 1.52
1975 2068 4.414956 AGGGCCAGGGTCCGATGA 62.415 66.667 6.18 0.00 46.16 2.92
2315 5755 2.128771 ACAGCTTCACCACAAACACT 57.871 45.000 0.00 0.00 0.00 3.55
2338 5778 2.024590 GCCGCCAGTACCCGTAGATT 62.025 60.000 0.00 0.00 0.00 2.40
2339 5779 0.031721 CCGCCAGTACCCGTAGATTC 59.968 60.000 0.00 0.00 0.00 2.52
2340 5780 0.317603 CGCCAGTACCCGTAGATTCG 60.318 60.000 0.00 0.00 0.00 3.34
2341 5781 0.743097 GCCAGTACCCGTAGATTCGT 59.257 55.000 0.00 0.00 0.00 3.85
2342 5782 1.268948 GCCAGTACCCGTAGATTCGTC 60.269 57.143 0.00 0.00 0.00 4.20
2343 5783 1.003116 CCAGTACCCGTAGATTCGTCG 60.003 57.143 0.00 0.00 0.00 5.12
2344 5784 0.659957 AGTACCCGTAGATTCGTCGC 59.340 55.000 0.00 0.00 0.00 5.19
2345 5785 0.317352 GTACCCGTAGATTCGTCGCC 60.317 60.000 0.00 0.00 0.00 5.54
2346 5786 1.775039 TACCCGTAGATTCGTCGCCG 61.775 60.000 0.00 0.00 0.00 6.46
2449 5902 2.281139 TTGACATTGCCGCCGACA 60.281 55.556 0.00 0.00 0.00 4.35
2538 5992 8.717821 TCGGTACTGAATATGTTTTTCTTTCTG 58.282 33.333 0.63 0.00 0.00 3.02
2540 5994 9.010029 GGTACTGAATATGTTTTTCTTTCTGGA 57.990 33.333 0.00 0.00 0.00 3.86
2715 6169 4.038763 ACAAGAGTTCAGTGACGAATGGTA 59.961 41.667 0.00 0.00 0.00 3.25
2716 6170 4.866508 AGAGTTCAGTGACGAATGGTAA 57.133 40.909 0.00 0.00 0.00 2.85
2732 6186 7.876068 ACGAATGGTAAGTTTATCTCTTCACAA 59.124 33.333 0.00 0.00 0.00 3.33
2733 6187 8.717821 CGAATGGTAAGTTTATCTCTTCACAAA 58.282 33.333 0.00 0.00 0.00 2.83
2742 6196 9.566432 AGTTTATCTCTTCACAAAATTGAGACT 57.434 29.630 0.00 0.00 36.74 3.24
2747 6201 8.731275 TCTCTTCACAAAATTGAGACTAAACA 57.269 30.769 0.00 0.00 0.00 2.83
2748 6202 9.342308 TCTCTTCACAAAATTGAGACTAAACAT 57.658 29.630 0.00 0.00 0.00 2.71
2749 6203 9.390795 CTCTTCACAAAATTGAGACTAAACATG 57.609 33.333 0.00 0.00 0.00 3.21
2808 6262 4.676924 GCTTTCAACAAGTTCAGCATACAC 59.323 41.667 0.00 0.00 0.00 2.90
2894 6349 6.817765 TGTGAAACCAGATTTATTCCTCAC 57.182 37.500 0.00 0.00 34.36 3.51
2917 6372 2.432510 GTCCAGTGTATCCCCAGAAGAG 59.567 54.545 0.00 0.00 0.00 2.85
2974 6429 0.768221 AGTCAGTCAGGCCTTTCCCA 60.768 55.000 0.00 0.00 34.51 4.37
3110 6567 5.808366 AGTCTAAGTGAACAGTCCAATCA 57.192 39.130 0.00 0.00 0.00 2.57
3121 6578 5.930837 ACAGTCCAATCAACAAAAGGAAA 57.069 34.783 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.164733 AGCTTGCTGGTACTAGTAATAGAGATA 58.835 37.037 10.05 0.00 0.00 1.98
4 5 7.007723 AGCTTGCTGGTACTAGTAATAGAGAT 58.992 38.462 10.05 0.00 0.00 2.75
5 6 6.263392 CAGCTTGCTGGTACTAGTAATAGAGA 59.737 42.308 14.25 5.22 0.00 3.10
17 18 1.532868 CAACTCACAGCTTGCTGGTAC 59.467 52.381 23.98 0.00 0.00 3.34
206 215 4.436448 GTTGCTGCTGACGCTCGC 62.436 66.667 0.00 0.00 36.97 5.03
207 216 2.490262 CTTGTTGCTGCTGACGCTCG 62.490 60.000 0.00 0.00 36.97 5.03
208 217 1.206072 CTTGTTGCTGCTGACGCTC 59.794 57.895 0.00 0.00 36.97 5.03
352 363 0.312102 GGAACCTTGTTGCTGCTGAC 59.688 55.000 0.00 0.29 0.00 3.51
397 408 8.592155 GTCACCTCTATTTTGAAACAAAACAAC 58.408 33.333 11.00 0.00 0.00 3.32
414 425 1.065709 GGGGCGATTTTGTCACCTCTA 60.066 52.381 0.00 0.00 0.00 2.43
437 448 8.088365 GTCCTAGACATAACTTTGGCAATTTTT 58.912 33.333 0.00 0.00 32.09 1.94
438 449 7.451566 AGTCCTAGACATAACTTTGGCAATTTT 59.548 33.333 0.00 0.00 34.60 1.82
439 450 6.948309 AGTCCTAGACATAACTTTGGCAATTT 59.052 34.615 0.00 0.00 34.60 1.82
440 451 6.485171 AGTCCTAGACATAACTTTGGCAATT 58.515 36.000 0.00 0.00 34.60 2.32
441 452 6.067217 AGTCCTAGACATAACTTTGGCAAT 57.933 37.500 0.00 0.00 34.60 3.56
442 453 5.499004 AGTCCTAGACATAACTTTGGCAA 57.501 39.130 0.00 0.00 34.60 4.52
443 454 5.248477 AGAAGTCCTAGACATAACTTTGGCA 59.752 40.000 0.00 0.00 34.60 4.92
444 455 5.735766 AGAAGTCCTAGACATAACTTTGGC 58.264 41.667 0.00 0.00 34.60 4.52
445 456 7.837863 TGTAGAAGTCCTAGACATAACTTTGG 58.162 38.462 0.00 0.00 34.60 3.28
446 457 9.360093 CTTGTAGAAGTCCTAGACATAACTTTG 57.640 37.037 0.00 0.00 34.60 2.77
447 458 8.532819 CCTTGTAGAAGTCCTAGACATAACTTT 58.467 37.037 0.00 0.00 34.60 2.66
448 459 7.894364 TCCTTGTAGAAGTCCTAGACATAACTT 59.106 37.037 0.00 0.00 34.60 2.66
449 460 7.339976 GTCCTTGTAGAAGTCCTAGACATAACT 59.660 40.741 0.00 0.00 34.60 2.24
450 461 7.122353 TGTCCTTGTAGAAGTCCTAGACATAAC 59.878 40.741 5.06 0.00 34.60 1.89
451 462 7.179966 TGTCCTTGTAGAAGTCCTAGACATAA 58.820 38.462 5.06 0.00 34.60 1.90
452 463 6.728411 TGTCCTTGTAGAAGTCCTAGACATA 58.272 40.000 5.06 0.00 34.60 2.29
453 464 5.580998 TGTCCTTGTAGAAGTCCTAGACAT 58.419 41.667 5.06 0.00 34.60 3.06
454 465 4.994282 TGTCCTTGTAGAAGTCCTAGACA 58.006 43.478 5.06 5.06 34.60 3.41
455 466 5.979288 TTGTCCTTGTAGAAGTCCTAGAC 57.021 43.478 0.00 0.00 0.00 2.59
456 467 6.989155 TTTTGTCCTTGTAGAAGTCCTAGA 57.011 37.500 0.00 0.00 0.00 2.43
457 468 6.092807 GCATTTTGTCCTTGTAGAAGTCCTAG 59.907 42.308 0.00 0.00 0.00 3.02
458 469 5.938125 GCATTTTGTCCTTGTAGAAGTCCTA 59.062 40.000 0.00 0.00 0.00 2.94
459 470 4.762251 GCATTTTGTCCTTGTAGAAGTCCT 59.238 41.667 0.00 0.00 0.00 3.85
460 471 4.762251 AGCATTTTGTCCTTGTAGAAGTCC 59.238 41.667 0.00 0.00 0.00 3.85
461 472 5.335191 CCAGCATTTTGTCCTTGTAGAAGTC 60.335 44.000 0.00 0.00 0.00 3.01
462 473 4.520492 CCAGCATTTTGTCCTTGTAGAAGT 59.480 41.667 0.00 0.00 0.00 3.01
463 474 4.761739 TCCAGCATTTTGTCCTTGTAGAAG 59.238 41.667 0.00 0.00 0.00 2.85
464 475 4.724399 TCCAGCATTTTGTCCTTGTAGAA 58.276 39.130 0.00 0.00 0.00 2.10
465 476 4.365514 TCCAGCATTTTGTCCTTGTAGA 57.634 40.909 0.00 0.00 0.00 2.59
466 477 4.761739 TCTTCCAGCATTTTGTCCTTGTAG 59.238 41.667 0.00 0.00 0.00 2.74
467 478 4.724399 TCTTCCAGCATTTTGTCCTTGTA 58.276 39.130 0.00 0.00 0.00 2.41
468 479 3.565307 TCTTCCAGCATTTTGTCCTTGT 58.435 40.909 0.00 0.00 0.00 3.16
469 480 4.589216 TTCTTCCAGCATTTTGTCCTTG 57.411 40.909 0.00 0.00 0.00 3.61
470 481 5.612725 TTTTCTTCCAGCATTTTGTCCTT 57.387 34.783 0.00 0.00 0.00 3.36
471 482 5.612725 TTTTTCTTCCAGCATTTTGTCCT 57.387 34.783 0.00 0.00 0.00 3.85
472 483 5.990996 TGATTTTTCTTCCAGCATTTTGTCC 59.009 36.000 0.00 0.00 0.00 4.02
473 484 7.113704 CTGATTTTTCTTCCAGCATTTTGTC 57.886 36.000 0.00 0.00 0.00 3.18
504 515 0.835941 ATGGCCCACACAAGCAAAAA 59.164 45.000 0.00 0.00 0.00 1.94
505 516 0.106335 CATGGCCCACACAAGCAAAA 59.894 50.000 0.00 0.00 0.00 2.44
506 517 1.747145 CATGGCCCACACAAGCAAA 59.253 52.632 0.00 0.00 0.00 3.68
507 518 2.208619 CCATGGCCCACACAAGCAA 61.209 57.895 0.00 0.00 0.00 3.91
508 519 2.601067 CCATGGCCCACACAAGCA 60.601 61.111 0.00 0.00 0.00 3.91
509 520 3.384532 CCCATGGCCCACACAAGC 61.385 66.667 6.09 0.00 0.00 4.01
510 521 2.681064 CCCCATGGCCCACACAAG 60.681 66.667 6.09 0.00 0.00 3.16
511 522 4.313707 CCCCCATGGCCCACACAA 62.314 66.667 6.09 0.00 0.00 3.33
515 526 3.963124 CTTCACCCCCATGGCCCAC 62.963 68.421 6.09 0.00 37.83 4.61
516 527 3.671410 CTTCACCCCCATGGCCCA 61.671 66.667 6.09 0.00 37.83 5.36
517 528 2.454459 TTTCTTCACCCCCATGGCCC 62.454 60.000 6.09 0.00 37.83 5.80
518 529 0.325577 ATTTCTTCACCCCCATGGCC 60.326 55.000 6.09 0.00 37.83 5.36
519 530 1.571955 AATTTCTTCACCCCCATGGC 58.428 50.000 6.09 0.00 37.83 4.40
520 531 4.402474 GTCTTAATTTCTTCACCCCCATGG 59.598 45.833 4.14 4.14 41.37 3.66
521 532 5.016173 TGTCTTAATTTCTTCACCCCCATG 58.984 41.667 0.00 0.00 0.00 3.66
522 533 5.016831 GTGTCTTAATTTCTTCACCCCCAT 58.983 41.667 0.00 0.00 0.00 4.00
523 534 4.403734 GTGTCTTAATTTCTTCACCCCCA 58.596 43.478 0.00 0.00 0.00 4.96
524 535 3.762288 GGTGTCTTAATTTCTTCACCCCC 59.238 47.826 0.00 0.00 39.25 5.40
525 536 4.663334 AGGTGTCTTAATTTCTTCACCCC 58.337 43.478 14.48 0.00 44.12 4.95
526 537 5.183331 GGAAGGTGTCTTAATTTCTTCACCC 59.817 44.000 14.48 5.34 44.12 4.61
527 538 5.768164 TGGAAGGTGTCTTAATTTCTTCACC 59.232 40.000 11.82 11.82 43.61 4.02
528 539 6.877611 TGGAAGGTGTCTTAATTTCTTCAC 57.122 37.500 0.00 0.00 34.14 3.18
529 540 7.060421 ACTTGGAAGGTGTCTTAATTTCTTCA 58.940 34.615 0.00 0.00 34.14 3.02
530 541 7.445707 AGACTTGGAAGGTGTCTTAATTTCTTC 59.554 37.037 0.00 0.00 37.76 2.87
531 542 7.229506 CAGACTTGGAAGGTGTCTTAATTTCTT 59.770 37.037 0.00 0.00 38.80 2.52
532 543 6.712547 CAGACTTGGAAGGTGTCTTAATTTCT 59.287 38.462 0.00 0.00 38.80 2.52
533 544 6.903419 CAGACTTGGAAGGTGTCTTAATTTC 58.097 40.000 0.00 0.00 38.80 2.17
534 545 6.884280 CAGACTTGGAAGGTGTCTTAATTT 57.116 37.500 0.00 0.00 38.80 1.82
550 561 5.430886 TGGACATTCATCATACCAGACTTG 58.569 41.667 0.00 0.00 0.00 3.16
551 562 5.426509 TCTGGACATTCATCATACCAGACTT 59.573 40.000 0.00 0.00 45.53 3.01
552 563 4.964897 TCTGGACATTCATCATACCAGACT 59.035 41.667 0.00 0.00 45.53 3.24
553 564 5.282055 TCTGGACATTCATCATACCAGAC 57.718 43.478 0.00 0.00 45.53 3.51
555 566 4.514441 GCTTCTGGACATTCATCATACCAG 59.486 45.833 0.00 0.00 44.02 4.00
556 567 4.080413 TGCTTCTGGACATTCATCATACCA 60.080 41.667 0.00 0.00 0.00 3.25
557 568 4.454678 TGCTTCTGGACATTCATCATACC 58.545 43.478 0.00 0.00 0.00 2.73
558 569 4.024218 GCTGCTTCTGGACATTCATCATAC 60.024 45.833 0.00 0.00 0.00 2.39
559 570 4.132336 GCTGCTTCTGGACATTCATCATA 58.868 43.478 0.00 0.00 0.00 2.15
560 571 2.950309 GCTGCTTCTGGACATTCATCAT 59.050 45.455 0.00 0.00 0.00 2.45
561 572 2.290450 TGCTGCTTCTGGACATTCATCA 60.290 45.455 0.00 0.00 0.00 3.07
562 573 2.362736 TGCTGCTTCTGGACATTCATC 58.637 47.619 0.00 0.00 0.00 2.92
563 574 2.502142 TGCTGCTTCTGGACATTCAT 57.498 45.000 0.00 0.00 0.00 2.57
564 575 2.502142 ATGCTGCTTCTGGACATTCA 57.498 45.000 0.00 0.00 0.00 2.57
565 576 3.192001 TGAAATGCTGCTTCTGGACATTC 59.808 43.478 0.00 0.00 30.90 2.67
566 577 3.159472 TGAAATGCTGCTTCTGGACATT 58.841 40.909 0.00 0.00 32.53 2.71
567 578 2.799017 TGAAATGCTGCTTCTGGACAT 58.201 42.857 0.00 0.00 0.00 3.06
568 579 2.275134 TGAAATGCTGCTTCTGGACA 57.725 45.000 0.00 0.00 0.00 4.02
569 580 2.555757 AGTTGAAATGCTGCTTCTGGAC 59.444 45.455 0.00 0.00 0.00 4.02
570 581 2.555325 CAGTTGAAATGCTGCTTCTGGA 59.445 45.455 0.00 0.00 0.00 3.86
571 582 2.942710 CAGTTGAAATGCTGCTTCTGG 58.057 47.619 0.00 0.00 0.00 3.86
578 589 4.227538 CTCTTCTTGCAGTTGAAATGCTG 58.772 43.478 18.66 11.26 44.17 4.41
579 590 3.887716 ACTCTTCTTGCAGTTGAAATGCT 59.112 39.130 18.66 0.00 44.17 3.79
580 591 4.023365 AGACTCTTCTTGCAGTTGAAATGC 60.023 41.667 11.04 11.04 44.11 3.56
581 592 5.450171 CAGACTCTTCTTGCAGTTGAAATG 58.550 41.667 0.00 0.00 0.00 2.32
582 593 4.518211 CCAGACTCTTCTTGCAGTTGAAAT 59.482 41.667 0.00 0.00 0.00 2.17
583 594 3.879295 CCAGACTCTTCTTGCAGTTGAAA 59.121 43.478 0.00 0.00 0.00 2.69
584 595 3.118261 ACCAGACTCTTCTTGCAGTTGAA 60.118 43.478 0.00 0.00 0.00 2.69
585 596 2.435805 ACCAGACTCTTCTTGCAGTTGA 59.564 45.455 0.00 0.00 0.00 3.18
586 597 2.843701 ACCAGACTCTTCTTGCAGTTG 58.156 47.619 0.00 0.00 0.00 3.16
587 598 3.118261 TGAACCAGACTCTTCTTGCAGTT 60.118 43.478 0.00 0.00 0.00 3.16
588 599 2.435805 TGAACCAGACTCTTCTTGCAGT 59.564 45.455 0.00 0.00 0.00 4.40
589 600 3.065655 CTGAACCAGACTCTTCTTGCAG 58.934 50.000 0.00 0.00 32.44 4.41
590 601 2.435805 ACTGAACCAGACTCTTCTTGCA 59.564 45.455 0.45 0.00 35.18 4.08
591 602 2.805099 CACTGAACCAGACTCTTCTTGC 59.195 50.000 0.45 0.00 35.18 4.01
592 603 4.065321 ACACTGAACCAGACTCTTCTTG 57.935 45.455 0.45 0.00 35.18 3.02
593 604 4.649674 TGTACACTGAACCAGACTCTTCTT 59.350 41.667 0.45 0.00 35.18 2.52
594 605 4.215908 TGTACACTGAACCAGACTCTTCT 58.784 43.478 0.45 0.00 35.18 2.85
595 606 4.585955 TGTACACTGAACCAGACTCTTC 57.414 45.455 0.45 0.00 35.18 2.87
596 607 4.262635 CCATGTACACTGAACCAGACTCTT 60.263 45.833 0.00 0.00 35.18 2.85
597 608 3.259374 CCATGTACACTGAACCAGACTCT 59.741 47.826 0.00 0.00 35.18 3.24
598 609 3.589988 CCATGTACACTGAACCAGACTC 58.410 50.000 0.00 0.00 35.18 3.36
599 610 2.289694 GCCATGTACACTGAACCAGACT 60.290 50.000 0.00 0.00 35.18 3.24
600 611 2.076863 GCCATGTACACTGAACCAGAC 58.923 52.381 0.00 0.00 35.18 3.51
601 612 1.003118 GGCCATGTACACTGAACCAGA 59.997 52.381 0.00 0.00 35.18 3.86
602 613 1.003580 AGGCCATGTACACTGAACCAG 59.996 52.381 5.01 0.00 37.52 4.00
603 614 1.003118 GAGGCCATGTACACTGAACCA 59.997 52.381 5.01 0.00 0.00 3.67
604 615 1.003118 TGAGGCCATGTACACTGAACC 59.997 52.381 5.01 3.90 0.00 3.62
605 616 2.472695 TGAGGCCATGTACACTGAAC 57.527 50.000 5.01 0.00 0.00 3.18
606 617 2.105649 TGTTGAGGCCATGTACACTGAA 59.894 45.455 5.01 0.00 0.00 3.02
607 618 1.696884 TGTTGAGGCCATGTACACTGA 59.303 47.619 5.01 0.00 0.00 3.41
608 619 1.806542 GTGTTGAGGCCATGTACACTG 59.193 52.381 17.82 0.00 36.91 3.66
609 620 1.271379 GGTGTTGAGGCCATGTACACT 60.271 52.381 21.75 0.00 39.16 3.55
610 621 1.165270 GGTGTTGAGGCCATGTACAC 58.835 55.000 17.19 17.19 38.62 2.90
611 622 1.064003 AGGTGTTGAGGCCATGTACA 58.936 50.000 5.01 0.00 0.00 2.90
612 623 2.200373 AAGGTGTTGAGGCCATGTAC 57.800 50.000 5.01 0.00 0.00 2.90
613 624 2.969821 AAAGGTGTTGAGGCCATGTA 57.030 45.000 5.01 0.00 0.00 2.29
614 625 2.086610 AAAAGGTGTTGAGGCCATGT 57.913 45.000 5.01 0.00 0.00 3.21
615 626 2.629617 AGAAAAAGGTGTTGAGGCCATG 59.370 45.455 5.01 0.00 0.00 3.66
616 627 2.629617 CAGAAAAAGGTGTTGAGGCCAT 59.370 45.455 5.01 0.00 0.00 4.40
617 628 2.031120 CAGAAAAAGGTGTTGAGGCCA 58.969 47.619 5.01 0.00 0.00 5.36
618 629 1.269778 GCAGAAAAAGGTGTTGAGGCC 60.270 52.381 0.00 0.00 0.00 5.19
619 630 1.269778 GGCAGAAAAAGGTGTTGAGGC 60.270 52.381 0.00 0.00 0.00 4.70
620 631 2.031120 TGGCAGAAAAAGGTGTTGAGG 58.969 47.619 0.00 0.00 0.00 3.86
621 632 3.381272 TCTTGGCAGAAAAAGGTGTTGAG 59.619 43.478 0.00 0.00 0.00 3.02
622 633 3.360867 TCTTGGCAGAAAAAGGTGTTGA 58.639 40.909 0.00 0.00 0.00 3.18
623 634 3.799281 TCTTGGCAGAAAAAGGTGTTG 57.201 42.857 0.00 0.00 0.00 3.33
624 635 3.769300 ACTTCTTGGCAGAAAAAGGTGTT 59.231 39.130 0.00 0.00 38.63 3.32
625 636 3.365472 ACTTCTTGGCAGAAAAAGGTGT 58.635 40.909 0.00 0.00 38.63 4.16
626 637 4.580580 AGTACTTCTTGGCAGAAAAAGGTG 59.419 41.667 0.00 0.00 38.63 4.00
627 638 4.793201 AGTACTTCTTGGCAGAAAAAGGT 58.207 39.130 0.00 0.00 38.63 3.50
628 639 5.523369 CAAGTACTTCTTGGCAGAAAAAGG 58.477 41.667 4.77 0.00 46.85 3.11
640 651 6.867293 GTCGGAGTTCAATACAAGTACTTCTT 59.133 38.462 4.77 0.00 36.75 2.52
641 652 6.015688 TGTCGGAGTTCAATACAAGTACTTCT 60.016 38.462 4.77 0.00 0.00 2.85
642 653 6.154445 TGTCGGAGTTCAATACAAGTACTTC 58.846 40.000 4.77 0.00 0.00 3.01
643 654 6.092955 TGTCGGAGTTCAATACAAGTACTT 57.907 37.500 1.12 1.12 0.00 2.24
644 655 5.717078 TGTCGGAGTTCAATACAAGTACT 57.283 39.130 0.00 0.00 0.00 2.73
645 656 6.774354 TTTGTCGGAGTTCAATACAAGTAC 57.226 37.500 0.00 0.00 32.18 2.73
646 657 7.156000 TCATTTGTCGGAGTTCAATACAAGTA 58.844 34.615 0.00 0.00 32.18 2.24
647 658 5.995282 TCATTTGTCGGAGTTCAATACAAGT 59.005 36.000 0.00 0.00 32.18 3.16
648 659 6.480524 TCATTTGTCGGAGTTCAATACAAG 57.519 37.500 0.00 0.00 32.18 3.16
649 660 6.622679 GCATCATTTGTCGGAGTTCAATACAA 60.623 38.462 0.00 0.00 0.00 2.41
650 661 5.163764 GCATCATTTGTCGGAGTTCAATACA 60.164 40.000 0.00 0.00 0.00 2.29
651 662 5.266242 GCATCATTTGTCGGAGTTCAATAC 58.734 41.667 0.00 0.00 0.00 1.89
652 663 4.033932 CGCATCATTTGTCGGAGTTCAATA 59.966 41.667 0.00 0.00 0.00 1.90
653 664 3.181507 CGCATCATTTGTCGGAGTTCAAT 60.182 43.478 0.00 0.00 0.00 2.57
654 665 2.159430 CGCATCATTTGTCGGAGTTCAA 59.841 45.455 0.00 0.00 0.00 2.69
655 666 1.731709 CGCATCATTTGTCGGAGTTCA 59.268 47.619 0.00 0.00 0.00 3.18
656 667 1.062587 CCGCATCATTTGTCGGAGTTC 59.937 52.381 0.00 0.00 43.38 3.01
657 668 1.086696 CCGCATCATTTGTCGGAGTT 58.913 50.000 0.00 0.00 43.38 3.01
658 669 0.036388 ACCGCATCATTTGTCGGAGT 60.036 50.000 6.52 0.00 43.38 3.85
659 670 0.374758 CACCGCATCATTTGTCGGAG 59.625 55.000 6.52 0.00 43.38 4.63
660 671 0.321210 ACACCGCATCATTTGTCGGA 60.321 50.000 6.52 0.00 43.38 4.55
661 672 1.364721 TACACCGCATCATTTGTCGG 58.635 50.000 0.00 0.00 45.00 4.79
662 673 3.463533 TTTACACCGCATCATTTGTCG 57.536 42.857 0.00 0.00 0.00 4.35
663 674 4.794169 AGTTTTACACCGCATCATTTGTC 58.206 39.130 0.00 0.00 0.00 3.18
664 675 4.277174 TGAGTTTTACACCGCATCATTTGT 59.723 37.500 0.00 0.00 0.00 2.83
665 676 4.793071 TGAGTTTTACACCGCATCATTTG 58.207 39.130 0.00 0.00 0.00 2.32
666 677 4.082787 CCTGAGTTTTACACCGCATCATTT 60.083 41.667 0.00 0.00 0.00 2.32
667 678 3.440173 CCTGAGTTTTACACCGCATCATT 59.560 43.478 0.00 0.00 0.00 2.57
668 679 3.009723 CCTGAGTTTTACACCGCATCAT 58.990 45.455 0.00 0.00 0.00 2.45
669 680 2.422597 CCTGAGTTTTACACCGCATCA 58.577 47.619 0.00 0.00 0.00 3.07
670 681 1.130561 GCCTGAGTTTTACACCGCATC 59.869 52.381 0.00 0.00 0.00 3.91
671 682 1.165270 GCCTGAGTTTTACACCGCAT 58.835 50.000 0.00 0.00 0.00 4.73
672 683 0.179043 TGCCTGAGTTTTACACCGCA 60.179 50.000 0.00 0.00 0.00 5.69
673 684 0.517316 CTGCCTGAGTTTTACACCGC 59.483 55.000 0.00 0.00 0.00 5.68
674 685 1.531149 CACTGCCTGAGTTTTACACCG 59.469 52.381 0.00 0.00 29.75 4.94
675 686 2.846193 TCACTGCCTGAGTTTTACACC 58.154 47.619 0.00 0.00 29.75 4.16
676 687 4.893424 TTTCACTGCCTGAGTTTTACAC 57.107 40.909 0.00 0.00 29.75 2.90
677 688 4.702612 TGTTTTCACTGCCTGAGTTTTACA 59.297 37.500 0.00 0.00 29.75 2.41
678 689 5.243426 TGTTTTCACTGCCTGAGTTTTAC 57.757 39.130 0.00 0.00 29.75 2.01
679 690 5.592282 TCATGTTTTCACTGCCTGAGTTTTA 59.408 36.000 0.00 0.00 29.75 1.52
680 691 4.402155 TCATGTTTTCACTGCCTGAGTTTT 59.598 37.500 0.00 0.00 29.75 2.43
681 692 3.953612 TCATGTTTTCACTGCCTGAGTTT 59.046 39.130 0.00 0.00 29.75 2.66
682 693 3.316308 GTCATGTTTTCACTGCCTGAGTT 59.684 43.478 0.00 0.00 29.75 3.01
683 694 2.880890 GTCATGTTTTCACTGCCTGAGT 59.119 45.455 0.00 0.00 34.02 3.41
684 695 3.144506 AGTCATGTTTTCACTGCCTGAG 58.855 45.455 0.00 0.00 0.00 3.35
685 696 3.213206 AGTCATGTTTTCACTGCCTGA 57.787 42.857 0.00 0.00 0.00 3.86
686 697 3.996150 AAGTCATGTTTTCACTGCCTG 57.004 42.857 0.00 0.00 0.00 4.85
687 698 3.953612 TGAAAGTCATGTTTTCACTGCCT 59.046 39.130 17.93 0.00 39.05 4.75
688 699 4.305989 TGAAAGTCATGTTTTCACTGCC 57.694 40.909 17.93 2.07 39.05 4.85
693 704 7.825681 TCTCTTTTGTGAAAGTCATGTTTTCA 58.174 30.769 17.93 17.93 42.32 2.69
694 705 8.862550 ATCTCTTTTGTGAAAGTCATGTTTTC 57.137 30.769 14.45 14.45 42.32 2.29
697 708 9.736023 GTTTATCTCTTTTGTGAAAGTCATGTT 57.264 29.630 0.00 0.00 42.32 2.71
698 709 8.070171 CGTTTATCTCTTTTGTGAAAGTCATGT 58.930 33.333 0.00 0.00 42.32 3.21
699 710 7.059945 GCGTTTATCTCTTTTGTGAAAGTCATG 59.940 37.037 0.00 0.00 42.32 3.07
700 711 7.078228 GCGTTTATCTCTTTTGTGAAAGTCAT 58.922 34.615 0.00 0.00 42.32 3.06
701 712 6.037720 TGCGTTTATCTCTTTTGTGAAAGTCA 59.962 34.615 0.00 0.00 42.32 3.41
702 713 6.357240 GTGCGTTTATCTCTTTTGTGAAAGTC 59.643 38.462 0.00 0.00 42.32 3.01
703 714 6.199393 GTGCGTTTATCTCTTTTGTGAAAGT 58.801 36.000 0.00 0.00 42.32 2.66
704 715 5.625311 GGTGCGTTTATCTCTTTTGTGAAAG 59.375 40.000 0.00 0.00 42.92 2.62
705 716 5.516090 GGTGCGTTTATCTCTTTTGTGAAA 58.484 37.500 0.00 0.00 0.00 2.69
706 717 4.319190 CGGTGCGTTTATCTCTTTTGTGAA 60.319 41.667 0.00 0.00 0.00 3.18
707 718 3.185594 CGGTGCGTTTATCTCTTTTGTGA 59.814 43.478 0.00 0.00 0.00 3.58
708 719 3.059188 ACGGTGCGTTTATCTCTTTTGTG 60.059 43.478 0.00 0.00 36.35 3.33
709 720 3.135994 ACGGTGCGTTTATCTCTTTTGT 58.864 40.909 0.00 0.00 36.35 2.83
710 721 3.806316 ACGGTGCGTTTATCTCTTTTG 57.194 42.857 0.00 0.00 36.35 2.44
783 794 7.038799 AGCAAATCAAACTAACCAATTCTCCAT 60.039 33.333 0.00 0.00 0.00 3.41
822 833 2.027192 GCTCACAATAGGGAAGTGACCA 60.027 50.000 0.00 0.00 37.36 4.02
835 846 1.078708 CCCCGTAACGGCTCACAAT 60.079 57.895 0.00 0.00 46.86 2.71
899 910 4.751767 TTTGCAAAAAGACCCTTCACAT 57.248 36.364 10.02 0.00 0.00 3.21
1060 1075 1.337118 CCAGCTCTCTCCCTCATACC 58.663 60.000 0.00 0.00 0.00 2.73
1087 1102 2.946785 AGATACTACCCTCCCTGTTCG 58.053 52.381 0.00 0.00 0.00 3.95
1409 1424 2.499205 CCGATGGTAAGCCTGCGA 59.501 61.111 0.00 0.00 35.24 5.10
1655 1670 6.712547 GCAGCTCCACTTCATATAATTTAGGT 59.287 38.462 0.00 0.00 0.00 3.08
1694 1769 3.056107 CAGAGGTTGGGTAATCTTGTCGA 60.056 47.826 0.00 0.00 0.00 4.20
1785 1864 5.447778 ACCTTCAGAACATGGATCTTCAT 57.552 39.130 0.00 0.00 0.00 2.57
1869 1962 0.595567 GTGTGACACCGAGCGTTGTA 60.596 55.000 3.92 0.00 0.00 2.41
1873 1966 0.874607 GAAAGTGTGACACCGAGCGT 60.875 55.000 12.81 0.00 34.49 5.07
1978 2071 0.322277 CCTGAACAGAGCACCTGCAT 60.322 55.000 3.19 0.00 46.81 3.96
2144 2260 9.761504 AGTCACACATCATAAATAGATCTCTTG 57.238 33.333 0.00 0.00 0.00 3.02
2249 5689 1.233285 CGCTGGTGCTGAGCTTCTTT 61.233 55.000 5.83 0.00 36.97 2.52
2538 5992 4.982295 GTGTACATTTGCAAGAAAACCTCC 59.018 41.667 0.00 0.00 0.00 4.30
2540 5994 4.499019 CGGTGTACATTTGCAAGAAAACCT 60.499 41.667 0.00 0.00 0.00 3.50
2716 6170 9.566432 AGTCTCAATTTTGTGAAGAGATAAACT 57.434 29.630 0.00 0.00 37.63 2.66
2732 6186 7.939039 TGTCTTCCTCATGTTTAGTCTCAATTT 59.061 33.333 0.00 0.00 0.00 1.82
2733 6187 7.453393 TGTCTTCCTCATGTTTAGTCTCAATT 58.547 34.615 0.00 0.00 0.00 2.32
2734 6188 7.009179 TGTCTTCCTCATGTTTAGTCTCAAT 57.991 36.000 0.00 0.00 0.00 2.57
2735 6189 6.419484 TGTCTTCCTCATGTTTAGTCTCAA 57.581 37.500 0.00 0.00 0.00 3.02
2736 6190 6.419484 TTGTCTTCCTCATGTTTAGTCTCA 57.581 37.500 0.00 0.00 0.00 3.27
2737 6191 6.876257 ACATTGTCTTCCTCATGTTTAGTCTC 59.124 38.462 0.00 0.00 0.00 3.36
2738 6192 6.773638 ACATTGTCTTCCTCATGTTTAGTCT 58.226 36.000 0.00 0.00 0.00 3.24
2739 6193 7.440523 AACATTGTCTTCCTCATGTTTAGTC 57.559 36.000 0.00 0.00 0.00 2.59
2740 6194 8.918202 TTAACATTGTCTTCCTCATGTTTAGT 57.082 30.769 1.97 0.00 34.56 2.24
2744 6198 9.911788 AGATATTAACATTGTCTTCCTCATGTT 57.088 29.630 0.00 0.00 36.40 2.71
2808 6262 4.106197 GTCAGAGCTTGTACTCCGTAATG 58.894 47.826 0.00 0.00 37.39 1.90
2894 6349 1.866015 TCTGGGGATACACTGGACTG 58.134 55.000 0.00 0.00 44.55 3.51
2974 6429 1.538135 GGTGGGGGTCACTGGTAGT 60.538 63.158 0.00 0.00 45.38 2.73
3083 6540 4.340097 TGGACTGTTCACTTAGACTTCGAA 59.660 41.667 0.00 0.00 0.00 3.71
3110 6567 8.088365 GCCTATCTACAATTGTTTCCTTTTGTT 58.912 33.333 17.78 0.00 34.39 2.83
3121 6578 6.844917 ACCCTAACTAGCCTATCTACAATTGT 59.155 38.462 16.68 16.68 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.