Multiple sequence alignment - TraesCS7D01G318400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G318400 chr7D 100.000 7246 0 0 1 7246 406893462 406900707 0.000000e+00 13381.0
1 TraesCS7D01G318400 chr7D 98.549 689 10 0 2 690 406873876 406874564 0.000000e+00 1218.0
2 TraesCS7D01G318400 chr7D 95.229 524 24 1 6219 6742 88167917 88167395 0.000000e+00 828.0
3 TraesCS7D01G318400 chr7D 96.517 402 14 0 6845 7246 88151929 88151528 0.000000e+00 665.0
4 TraesCS7D01G318400 chr7D 95.833 264 10 1 3903 4166 345842348 345842086 6.720000e-115 425.0
5 TraesCS7D01G318400 chr7D 97.436 78 2 0 6741 6818 88152003 88151926 4.560000e-27 134.0
6 TraesCS7D01G318400 chr7B 97.041 2028 52 6 1882 3905 417865799 417867822 0.000000e+00 3406.0
7 TraesCS7D01G318400 chr7B 91.031 1193 66 17 691 1879 417864612 417865767 0.000000e+00 1572.0
8 TraesCS7D01G318400 chr7B 95.806 906 29 4 5328 6224 417868335 417869240 0.000000e+00 1454.0
9 TraesCS7D01G318400 chr7B 97.290 369 9 1 4165 4533 417867821 417868188 6.170000e-175 625.0
10 TraesCS7D01G318400 chr7B 95.833 264 11 0 3903 4166 740431326 740431063 1.870000e-115 427.0
11 TraesCS7D01G318400 chr7B 86.648 352 36 8 4670 5018 680634310 680633967 5.310000e-101 379.0
12 TraesCS7D01G318400 chr7B 86.441 354 37 7 4670 5020 680641598 680641253 1.910000e-100 377.0
13 TraesCS7D01G318400 chr7B 95.897 195 5 1 5206 5400 417868180 417868371 5.460000e-81 313.0
14 TraesCS7D01G318400 chr7B 95.000 60 3 0 5149 5208 573260557 573260616 2.150000e-15 95.3
15 TraesCS7D01G318400 chr7A 97.251 1746 43 4 2164 3905 464266147 464267891 0.000000e+00 2953.0
16 TraesCS7D01G318400 chr7A 94.869 877 29 6 5364 6225 464268374 464269249 0.000000e+00 1356.0
17 TraesCS7D01G318400 chr7A 89.289 1111 51 29 789 1881 464264287 464265347 0.000000e+00 1330.0
18 TraesCS7D01G318400 chr7A 98.118 372 4 2 4165 4533 464267892 464268263 0.000000e+00 645.0
19 TraesCS7D01G318400 chr7A 96.842 285 9 0 1882 2166 464265377 464265661 1.830000e-130 477.0
20 TraesCS7D01G318400 chr7A 95.541 157 2 3 5203 5358 464268253 464268405 5.610000e-61 246.0
21 TraesCS7D01G318400 chr2D 96.884 1027 28 1 6224 7246 292663480 292664506 0.000000e+00 1716.0
22 TraesCS7D01G318400 chr2D 95.217 690 32 1 1 690 298755522 298756210 0.000000e+00 1090.0
23 TraesCS7D01G318400 chr2D 94.646 523 26 1 6220 6742 375603315 375602795 0.000000e+00 809.0
24 TraesCS7D01G318400 chr2D 94.455 523 29 0 6220 6742 375623495 375622973 0.000000e+00 806.0
25 TraesCS7D01G318400 chr2D 94.466 524 26 2 6220 6742 375635152 375634631 0.000000e+00 804.0
26 TraesCS7D01G318400 chr2D 95.466 397 14 1 6854 7246 375618665 375618269 1.330000e-176 630.0
27 TraesCS7D01G318400 chr2D 94.710 397 17 1 6854 7246 375630333 375629937 1.340000e-171 614.0
28 TraesCS7D01G318400 chr2D 96.212 264 10 0 3903 4166 199038223 199038486 4.020000e-117 433.0
29 TraesCS7D01G318400 chr2D 98.529 68 1 0 6741 6808 375618729 375618662 3.550000e-23 121.0
30 TraesCS7D01G318400 chr3D 95.665 692 26 4 1 690 251466047 251465358 0.000000e+00 1109.0
31 TraesCS7D01G318400 chr3D 92.037 540 21 9 4670 5206 315763457 315763977 0.000000e+00 739.0
32 TraesCS7D01G318400 chr6D 95.369 691 30 2 1 690 59692392 59693081 0.000000e+00 1098.0
33 TraesCS7D01G318400 chr6D 95.217 690 33 0 1 690 160667918 160667229 0.000000e+00 1092.0
34 TraesCS7D01G318400 chr6D 94.949 693 34 1 1 693 160660412 160659721 0.000000e+00 1085.0
35 TraesCS7D01G318400 chr6D 96.838 506 16 0 6741 7246 28025255 28025760 0.000000e+00 846.0
36 TraesCS7D01G318400 chr6D 95.211 522 22 2 6221 6742 28006121 28006639 0.000000e+00 822.0
37 TraesCS7D01G318400 chr5D 95.238 693 30 3 1 691 472364311 472365002 0.000000e+00 1094.0
38 TraesCS7D01G318400 chr5D 97.628 506 12 0 6741 7246 423460373 423460878 0.000000e+00 869.0
39 TraesCS7D01G318400 chr5D 95.174 518 25 0 6225 6742 423455570 423456087 0.000000e+00 819.0
40 TraesCS7D01G318400 chr1D 95.072 690 32 2 2 691 431456184 431455497 0.000000e+00 1085.0
41 TraesCS7D01G318400 chr1D 94.928 690 34 1 1 690 431498320 431497632 0.000000e+00 1079.0
42 TraesCS7D01G318400 chr1D 98.024 506 10 0 6741 7246 458777071 458776566 0.000000e+00 880.0
43 TraesCS7D01G318400 chr1D 95.385 520 23 1 6223 6742 458780905 458780387 0.000000e+00 826.0
44 TraesCS7D01G318400 chr1D 91.502 506 27 5 6741 7246 474500930 474501419 0.000000e+00 682.0
45 TraesCS7D01G318400 chr3B 88.652 705 47 14 4534 5207 648741289 648741991 0.000000e+00 828.0
46 TraesCS7D01G318400 chr3B 89.209 556 41 10 4534 5073 195559571 195559019 0.000000e+00 676.0
47 TraesCS7D01G318400 chr3B 91.358 486 27 8 4685 5164 235857733 235858209 0.000000e+00 651.0
48 TraesCS7D01G318400 chr3B 94.565 276 13 2 3898 4172 572227718 572227992 6.720000e-115 425.0
49 TraesCS7D01G318400 chr3B 93.617 141 8 1 4534 4673 292163409 292163549 7.370000e-50 209.0
50 TraesCS7D01G318400 chr3B 86.861 137 12 5 4531 4663 428106580 428106446 1.630000e-31 148.0
51 TraesCS7D01G318400 chr1A 93.424 517 25 1 6225 6741 540396412 540395905 0.000000e+00 758.0
52 TraesCS7D01G318400 chr1A 89.703 505 26 10 6741 7245 540394153 540393675 7.980000e-174 621.0
53 TraesCS7D01G318400 chr1A 98.148 54 1 0 5149 5202 561386226 561386279 2.150000e-15 95.3
54 TraesCS7D01G318400 chr2A 93.037 517 26 6 6226 6742 772864898 772865404 0.000000e+00 747.0
55 TraesCS7D01G318400 chr2A 90.693 505 21 10 6741 7245 772866172 772866650 0.000000e+00 649.0
56 TraesCS7D01G318400 chr2A 94.828 58 3 0 5149 5206 14820123 14820180 2.780000e-14 91.6
57 TraesCS7D01G318400 chr5B 91.767 498 17 12 4674 5164 208443174 208443654 0.000000e+00 671.0
58 TraesCS7D01G318400 chr5B 89.608 510 22 21 4674 5167 534308345 534307851 2.870000e-173 619.0
59 TraesCS7D01G318400 chr5B 95.035 141 5 2 4534 4673 208440372 208440511 3.400000e-53 220.0
60 TraesCS7D01G318400 chr4B 91.767 498 17 12 4677 5167 251666632 251666152 0.000000e+00 671.0
61 TraesCS7D01G318400 chr4B 93.793 145 7 2 4530 4673 251669441 251669298 4.400000e-52 217.0
62 TraesCS7D01G318400 chr4B 95.385 65 3 0 5149 5213 251666140 251666076 3.580000e-18 104.0
63 TraesCS7D01G318400 chr3A 89.600 500 21 17 4670 5164 686550315 686550788 2.240000e-169 606.0
64 TraesCS7D01G318400 chr3A 88.264 409 18 16 4760 5164 11685055 11685437 5.120000e-126 462.0
65 TraesCS7D01G318400 chr3A 94.366 142 7 1 4533 4673 686549887 686550028 4.400000e-52 217.0
66 TraesCS7D01G318400 chr3A 92.000 150 11 1 4525 4673 11684248 11684397 7.370000e-50 209.0
67 TraesCS7D01G318400 chr3A 91.333 150 12 1 4525 4673 11709630 11709779 3.430000e-48 204.0
68 TraesCS7D01G318400 chr3A 88.372 129 11 4 4527 4651 602855581 602855709 1.260000e-32 152.0
69 TraesCS7D01G318400 chr3A 86.260 131 15 3 4524 4651 618001955 618001825 9.800000e-29 139.0
70 TraesCS7D01G318400 chr6A 89.910 446 26 10 4721 5164 100302515 100302943 2.280000e-154 556.0
71 TraesCS7D01G318400 chr6A 88.544 419 23 10 4670 5086 141375250 141374855 1.090000e-132 484.0
72 TraesCS7D01G318400 chr6A 94.326 141 7 1 4534 4673 29294046 29294186 1.580000e-51 215.0
73 TraesCS7D01G318400 chr4A 88.000 500 20 19 4670 5164 614874038 614874502 8.210000e-154 555.0
74 TraesCS7D01G318400 chr5A 96.958 263 8 0 3904 4166 466179381 466179119 6.670000e-120 442.0
75 TraesCS7D01G318400 chr5A 95.522 268 12 0 3903 4170 269178310 269178577 5.190000e-116 429.0
76 TraesCS7D01G318400 chr5A 94.915 59 3 0 5149 5207 275091948 275091890 7.740000e-15 93.5
77 TraesCS7D01G318400 chr4D 94.872 273 14 0 3894 4166 456359307 456359579 1.870000e-115 427.0
78 TraesCS7D01G318400 chr6B 95.817 263 11 0 3904 4166 46792652 46792914 6.720000e-115 425.0
79 TraesCS7D01G318400 chr2B 94.505 273 14 1 3899 4171 309397608 309397879 3.130000e-113 420.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G318400 chr7D 406893462 406900707 7245 False 13381.000000 13381 100.000000 1 7246 1 chr7D.!!$F2 7245
1 TraesCS7D01G318400 chr7D 406873876 406874564 688 False 1218.000000 1218 98.549000 2 690 1 chr7D.!!$F1 688
2 TraesCS7D01G318400 chr7D 88167395 88167917 522 True 828.000000 828 95.229000 6219 6742 1 chr7D.!!$R1 523
3 TraesCS7D01G318400 chr7B 417864612 417869240 4628 False 1474.000000 3406 95.413000 691 6224 5 chr7B.!!$F2 5533
4 TraesCS7D01G318400 chr7A 464264287 464269249 4962 False 1167.833333 2953 95.318333 789 6225 6 chr7A.!!$F1 5436
5 TraesCS7D01G318400 chr2D 292663480 292664506 1026 False 1716.000000 1716 96.884000 6224 7246 1 chr2D.!!$F2 1022
6 TraesCS7D01G318400 chr2D 298755522 298756210 688 False 1090.000000 1090 95.217000 1 690 1 chr2D.!!$F3 689
7 TraesCS7D01G318400 chr2D 375602795 375603315 520 True 809.000000 809 94.646000 6220 6742 1 chr2D.!!$R1 522
8 TraesCS7D01G318400 chr2D 375622973 375623495 522 True 806.000000 806 94.455000 6220 6742 1 chr2D.!!$R2 522
9 TraesCS7D01G318400 chr2D 375634631 375635152 521 True 804.000000 804 94.466000 6220 6742 1 chr2D.!!$R4 522
10 TraesCS7D01G318400 chr3D 251465358 251466047 689 True 1109.000000 1109 95.665000 1 690 1 chr3D.!!$R1 689
11 TraesCS7D01G318400 chr3D 315763457 315763977 520 False 739.000000 739 92.037000 4670 5206 1 chr3D.!!$F1 536
12 TraesCS7D01G318400 chr6D 59692392 59693081 689 False 1098.000000 1098 95.369000 1 690 1 chr6D.!!$F3 689
13 TraesCS7D01G318400 chr6D 160667229 160667918 689 True 1092.000000 1092 95.217000 1 690 1 chr6D.!!$R2 689
14 TraesCS7D01G318400 chr6D 160659721 160660412 691 True 1085.000000 1085 94.949000 1 693 1 chr6D.!!$R1 692
15 TraesCS7D01G318400 chr6D 28025255 28025760 505 False 846.000000 846 96.838000 6741 7246 1 chr6D.!!$F2 505
16 TraesCS7D01G318400 chr6D 28006121 28006639 518 False 822.000000 822 95.211000 6221 6742 1 chr6D.!!$F1 521
17 TraesCS7D01G318400 chr5D 472364311 472365002 691 False 1094.000000 1094 95.238000 1 691 1 chr5D.!!$F3 690
18 TraesCS7D01G318400 chr5D 423460373 423460878 505 False 869.000000 869 97.628000 6741 7246 1 chr5D.!!$F2 505
19 TraesCS7D01G318400 chr5D 423455570 423456087 517 False 819.000000 819 95.174000 6225 6742 1 chr5D.!!$F1 517
20 TraesCS7D01G318400 chr1D 431455497 431456184 687 True 1085.000000 1085 95.072000 2 691 1 chr1D.!!$R1 689
21 TraesCS7D01G318400 chr1D 431497632 431498320 688 True 1079.000000 1079 94.928000 1 690 1 chr1D.!!$R2 689
22 TraesCS7D01G318400 chr1D 458776566 458780905 4339 True 853.000000 880 96.704500 6223 7246 2 chr1D.!!$R3 1023
23 TraesCS7D01G318400 chr3B 648741289 648741991 702 False 828.000000 828 88.652000 4534 5207 1 chr3B.!!$F4 673
24 TraesCS7D01G318400 chr3B 195559019 195559571 552 True 676.000000 676 89.209000 4534 5073 1 chr3B.!!$R1 539
25 TraesCS7D01G318400 chr1A 540393675 540396412 2737 True 689.500000 758 91.563500 6225 7245 2 chr1A.!!$R1 1020
26 TraesCS7D01G318400 chr2A 772864898 772866650 1752 False 698.000000 747 91.865000 6226 7245 2 chr2A.!!$F2 1019
27 TraesCS7D01G318400 chr5B 208440372 208443654 3282 False 445.500000 671 93.401000 4534 5164 2 chr5B.!!$F1 630
28 TraesCS7D01G318400 chr4B 251666076 251669441 3365 True 330.666667 671 93.648333 4530 5213 3 chr4B.!!$R1 683
29 TraesCS7D01G318400 chr3A 686549887 686550788 901 False 411.500000 606 91.983000 4533 5164 2 chr3A.!!$F4 631
30 TraesCS7D01G318400 chr3A 11684248 11685437 1189 False 335.500000 462 90.132000 4525 5164 2 chr3A.!!$F3 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 904 0.038618 AAAACGAAAATCGCCCAGCC 60.039 50.000 0.00 0.00 45.12 4.85 F
1645 1667 0.036671 TCTGCCTGCTCATGTCAGTG 60.037 55.000 13.72 8.42 0.00 3.66 F
1646 1668 0.036671 CTGCCTGCTCATGTCAGTGA 60.037 55.000 13.72 0.00 0.00 3.41 F
2517 3072 0.443869 GCTGTGTGTTGGTATCTGCG 59.556 55.000 0.00 0.00 0.00 5.18 F
4003 4565 0.388520 GTTTTGGGCGAGATTGCACC 60.389 55.000 0.00 0.00 37.52 5.01 F
4098 4660 0.375454 CAAACGAGTGGTGAAACGCA 59.625 50.000 0.00 0.00 38.12 5.24 F
4998 8592 1.003580 AGCTGGGAATTGATGACGTGT 59.996 47.619 0.00 0.00 0.00 4.49 F
5408 9073 1.073199 AAACCTCAGGGCTTCCACG 59.927 57.895 0.00 0.00 35.63 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 2227 0.673644 CACCTTGGCTAGTGTTCGGG 60.674 60.000 0.00 0.0 0.00 5.14 R
3081 3636 1.536709 CCAGCAGAATAATTTGGCGGC 60.537 52.381 0.00 0.0 0.00 6.53 R
3232 3787 2.425143 TTCATGGGATTGTGAGAGGC 57.575 50.000 0.00 0.0 0.00 4.70 R
4079 4641 0.375454 TGCGTTTCACCACTCGTTTG 59.625 50.000 0.00 0.0 0.00 2.93 R
5595 9266 0.244721 GCTCAAAGCGGGCTTTTGAT 59.755 50.000 15.51 0.0 42.93 2.57 R
5709 9380 0.252467 AGTCCCACTGCCTTCTAGCT 60.252 55.000 0.00 0.0 0.00 3.32 R
5975 9654 0.768221 AGTCAGTCAGGCCTTTCCCA 60.768 55.000 0.00 0.0 34.51 4.37 R
6634 10321 2.128771 ACAGCTTCACCACAAACACT 57.871 45.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
454 456 7.746703 ACACCTCATCCCCTTTTAATAGTATC 58.253 38.462 0.00 0.00 0.00 2.24
682 686 2.674380 CACCCAGGGAGCACTTGC 60.674 66.667 14.54 0.00 42.49 4.01
723 727 8.882415 AAAAGATTAGTCTTACACAAACTCGA 57.118 30.769 0.32 0.00 43.80 4.04
729 733 4.586001 AGTCTTACACAAACTCGAGGGTTA 59.414 41.667 18.41 5.06 0.00 2.85
738 742 5.247792 ACAAACTCGAGGGTTAGGAATAAGT 59.752 40.000 18.41 0.00 0.00 2.24
739 743 6.171213 CAAACTCGAGGGTTAGGAATAAGTT 58.829 40.000 18.41 0.00 0.00 2.66
872 879 5.570205 TGGTTTGGGAATAAGTGAGTGTA 57.430 39.130 0.00 0.00 0.00 2.90
897 904 0.038618 AAAACGAAAATCGCCCAGCC 60.039 50.000 0.00 0.00 45.12 4.85
946 953 4.835927 CGACCTATCGCCTTTGCT 57.164 55.556 0.00 0.00 42.43 3.91
1044 1051 2.736826 CGGCCTCTTCTTCCTCCCC 61.737 68.421 0.00 0.00 0.00 4.81
1081 1092 7.537306 CCACCACGAACAGACAATAATAAAAAG 59.463 37.037 0.00 0.00 0.00 2.27
1082 1093 8.073768 CACCACGAACAGACAATAATAAAAAGT 58.926 33.333 0.00 0.00 0.00 2.66
1083 1094 9.275398 ACCACGAACAGACAATAATAAAAAGTA 57.725 29.630 0.00 0.00 0.00 2.24
1108 1119 4.538746 TTTCCCAAAACGAACCAAAAGT 57.461 36.364 0.00 0.00 0.00 2.66
1111 1122 5.656213 TCCCAAAACGAACCAAAAGTAAA 57.344 34.783 0.00 0.00 0.00 2.01
1313 1333 2.054140 AATTCGTTGTGTTGCGGCGT 62.054 50.000 9.37 0.00 0.00 5.68
1368 1388 1.163420 TGCGCGTTATTAGGGCCATG 61.163 55.000 8.43 0.00 45.37 3.66
1377 1397 6.620678 CGTTATTAGGGCCATGATAATTTGG 58.379 40.000 16.45 4.87 36.03 3.28
1561 1583 4.349342 CCTGCTCTTATCACTATTTCCCCT 59.651 45.833 0.00 0.00 0.00 4.79
1568 1590 7.280356 TCTTATCACTATTTCCCCTGCTAAAC 58.720 38.462 0.00 0.00 0.00 2.01
1606 1628 3.895704 ATGTTAAAGGGACACTGGGTT 57.104 42.857 0.00 0.00 0.00 4.11
1635 1657 0.694771 TCTGTGGAAATCTGCCTGCT 59.305 50.000 0.00 0.00 0.00 4.24
1636 1658 1.093159 CTGTGGAAATCTGCCTGCTC 58.907 55.000 0.00 0.00 0.00 4.26
1637 1659 0.401356 TGTGGAAATCTGCCTGCTCA 59.599 50.000 0.00 0.00 0.00 4.26
1638 1660 1.005097 TGTGGAAATCTGCCTGCTCAT 59.995 47.619 0.00 0.00 0.00 2.90
1639 1661 1.404391 GTGGAAATCTGCCTGCTCATG 59.596 52.381 0.00 0.00 0.00 3.07
1640 1662 1.005097 TGGAAATCTGCCTGCTCATGT 59.995 47.619 0.00 0.00 0.00 3.21
1641 1663 1.674962 GGAAATCTGCCTGCTCATGTC 59.325 52.381 0.00 0.00 0.00 3.06
1642 1664 2.362736 GAAATCTGCCTGCTCATGTCA 58.637 47.619 0.00 0.00 0.00 3.58
1643 1665 2.039818 AATCTGCCTGCTCATGTCAG 57.960 50.000 9.68 9.68 0.00 3.51
1644 1666 0.910338 ATCTGCCTGCTCATGTCAGT 59.090 50.000 13.72 0.00 0.00 3.41
1645 1667 0.036671 TCTGCCTGCTCATGTCAGTG 60.037 55.000 13.72 8.42 0.00 3.66
1646 1668 0.036671 CTGCCTGCTCATGTCAGTGA 60.037 55.000 13.72 0.00 0.00 3.41
1679 1713 8.504005 GCTAAATTAGTTTGAACTGCAGAGTTA 58.496 33.333 23.35 3.43 42.80 2.24
1809 1843 5.271598 AGCTTGATTGGTTCCCATGAATTA 58.728 37.500 0.00 0.00 31.53 1.40
1839 1873 3.016736 GGCTGTATTGTATTGGTGCTGT 58.983 45.455 0.00 0.00 0.00 4.40
1859 1894 5.427378 CTGTTTGGTGGAGGAAAATGTTTT 58.573 37.500 0.00 0.00 0.00 2.43
1939 2004 5.121142 AGCATGCAACTTTTTATGTTCATGC 59.879 36.000 21.98 21.55 45.53 4.06
1990 2055 6.262273 GGTGGTTGAATTTTGTCTTGAGACTA 59.738 38.462 12.00 2.19 44.99 2.59
2038 2103 3.450457 TCCCTTGTTGCAGTCAATGTTTT 59.550 39.130 6.81 0.00 34.29 2.43
2162 2227 9.539825 ACAAATATGACATCTGTTCTGATCTAC 57.460 33.333 0.00 0.00 0.00 2.59
2227 2781 2.906389 TGTCAGGGTAGATCTTGCACTT 59.094 45.455 0.00 0.00 0.00 3.16
2242 2796 1.973281 ACTTTCGCACATGGCAGGG 60.973 57.895 3.46 0.00 45.17 4.45
2265 2819 5.934043 GGCAACTGCTATTGAAATTCCTTTT 59.066 36.000 1.06 0.00 41.70 2.27
2346 2901 4.389890 TGTTGTGAAGCTTTTGAGCAAT 57.610 36.364 0.00 0.00 37.25 3.56
2352 2907 4.992951 GTGAAGCTTTTGAGCAATCCATTT 59.007 37.500 0.00 0.00 37.25 2.32
2444 2999 7.268199 TGATGCTGGAATTTCTGAATATGTC 57.732 36.000 0.00 0.00 0.00 3.06
2514 3069 1.072173 TGCTGCTGTGTGTTGGTATCT 59.928 47.619 0.00 0.00 0.00 1.98
2517 3072 0.443869 GCTGTGTGTTGGTATCTGCG 59.556 55.000 0.00 0.00 0.00 5.18
2536 3091 7.552458 TCTGCGAATTATCAGATGCTTTTTA 57.448 32.000 5.33 0.00 34.69 1.52
2792 3347 9.342308 ACCATCTGAACAACCATATATAACTTG 57.658 33.333 0.00 0.00 0.00 3.16
2866 3421 3.450457 TCTTGATTGGTTGCAGGTTTGTT 59.550 39.130 0.00 0.00 0.00 2.83
3081 3636 4.162072 CGCAGAATGATGTAGGTCTATCG 58.838 47.826 0.00 0.00 39.69 2.92
3163 3718 5.176592 GGATTACTCACCTGGAAGTTACAC 58.823 45.833 0.00 0.00 0.00 2.90
3232 3787 3.420893 TCTGTTTTTAGGCACTGGATGG 58.579 45.455 0.00 0.00 41.52 3.51
3356 3915 8.690840 GTTGCAATTGTACATTCTTCTGTTTAC 58.309 33.333 0.59 0.00 0.00 2.01
3452 4011 3.438781 TGACACCAATCGGCTATTTTGTC 59.561 43.478 12.79 12.79 37.96 3.18
3503 4062 4.464008 AGGTATGCTAATTGTGGGTCATG 58.536 43.478 0.00 0.00 0.00 3.07
3572 4131 8.611757 CATTCATGTAATACTTTTGTCATCGGA 58.388 33.333 0.00 0.00 0.00 4.55
3636 4195 4.731720 TGTTATGACCATGATGTTTTGCG 58.268 39.130 0.00 0.00 0.00 4.85
3674 4233 5.048782 TGTTGAGTTGTCAAGTAATGCATCC 60.049 40.000 0.00 0.00 43.55 3.51
3883 4442 7.310609 CCCATAATTTCTGAAATTCCACTTGGT 60.311 37.037 26.60 7.36 41.16 3.67
3895 4454 6.639632 ATTCCACTTGGTATGTGAATATGC 57.360 37.500 0.00 0.00 37.60 3.14
3913 4475 9.951866 TGAATATGCTATATAATACTCCCTCCA 57.048 33.333 0.00 0.00 0.00 3.86
3917 4479 7.676683 TGCTATATAATACTCCCTCCATTCC 57.323 40.000 0.00 0.00 0.00 3.01
3918 4480 7.430844 TGCTATATAATACTCCCTCCATTCCT 58.569 38.462 0.00 0.00 0.00 3.36
3919 4481 8.574853 TGCTATATAATACTCCCTCCATTCCTA 58.425 37.037 0.00 0.00 0.00 2.94
3920 4482 9.435570 GCTATATAATACTCCCTCCATTCCTAA 57.564 37.037 0.00 0.00 0.00 2.69
3946 4508 4.712122 AGGGTGTATAATTTTTGGCACG 57.288 40.909 0.00 0.00 0.00 5.34
3947 4509 3.445805 AGGGTGTATAATTTTTGGCACGG 59.554 43.478 0.00 0.00 0.00 4.94
3948 4510 3.444388 GGGTGTATAATTTTTGGCACGGA 59.556 43.478 0.00 0.00 0.00 4.69
3949 4511 4.082136 GGGTGTATAATTTTTGGCACGGAA 60.082 41.667 0.00 0.00 0.00 4.30
3950 4512 5.471257 GGTGTATAATTTTTGGCACGGAAA 58.529 37.500 0.00 0.00 0.00 3.13
3951 4513 6.103330 GGTGTATAATTTTTGGCACGGAAAT 58.897 36.000 0.00 0.00 0.00 2.17
3952 4514 6.592220 GGTGTATAATTTTTGGCACGGAAATT 59.408 34.615 15.37 15.37 38.39 1.82
3953 4515 7.760340 GGTGTATAATTTTTGGCACGGAAATTA 59.240 33.333 17.59 17.59 39.82 1.40
3954 4516 9.141400 GTGTATAATTTTTGGCACGGAAATTAA 57.859 29.630 18.49 10.54 39.36 1.40
3955 4517 9.706691 TGTATAATTTTTGGCACGGAAATTAAA 57.293 25.926 18.49 10.20 39.36 1.52
3958 4520 7.793927 AATTTTTGGCACGGAAATTAAAGAA 57.206 28.000 11.48 0.00 35.01 2.52
3959 4521 6.591313 TTTTTGGCACGGAAATTAAAGAAC 57.409 33.333 0.00 0.00 0.00 3.01
3960 4522 3.546002 TGGCACGGAAATTAAAGAACG 57.454 42.857 0.00 0.00 0.00 3.95
3961 4523 2.247637 GGCACGGAAATTAAAGAACGC 58.752 47.619 0.00 0.00 0.00 4.84
3962 4524 2.350964 GGCACGGAAATTAAAGAACGCA 60.351 45.455 0.00 0.00 0.00 5.24
3963 4525 2.655001 GCACGGAAATTAAAGAACGCAC 59.345 45.455 0.00 0.00 0.00 5.34
3964 4526 3.850374 GCACGGAAATTAAAGAACGCACA 60.850 43.478 0.00 0.00 0.00 4.57
3965 4527 4.472286 CACGGAAATTAAAGAACGCACAT 58.528 39.130 0.00 0.00 0.00 3.21
3966 4528 4.320690 CACGGAAATTAAAGAACGCACATG 59.679 41.667 0.00 0.00 0.00 3.21
3967 4529 3.851403 CGGAAATTAAAGAACGCACATGG 59.149 43.478 0.00 0.00 0.00 3.66
3968 4530 4.378978 CGGAAATTAAAGAACGCACATGGA 60.379 41.667 0.00 0.00 0.00 3.41
3969 4531 5.095490 GGAAATTAAAGAACGCACATGGAG 58.905 41.667 0.00 0.00 0.00 3.86
3970 4532 4.701956 AATTAAAGAACGCACATGGAGG 57.298 40.909 0.00 0.00 0.00 4.30
3971 4533 2.107950 TAAAGAACGCACATGGAGGG 57.892 50.000 0.00 0.00 0.00 4.30
3972 4534 0.400213 AAAGAACGCACATGGAGGGA 59.600 50.000 10.67 0.00 0.00 4.20
3973 4535 0.400213 AAGAACGCACATGGAGGGAA 59.600 50.000 10.67 0.00 0.00 3.97
3974 4536 0.400213 AGAACGCACATGGAGGGAAA 59.600 50.000 10.67 0.00 0.00 3.13
3975 4537 1.202879 AGAACGCACATGGAGGGAAAA 60.203 47.619 10.67 0.00 0.00 2.29
3976 4538 1.818674 GAACGCACATGGAGGGAAAAT 59.181 47.619 10.67 0.00 0.00 1.82
3977 4539 1.923356 ACGCACATGGAGGGAAAATT 58.077 45.000 10.67 0.00 0.00 1.82
3978 4540 2.247358 ACGCACATGGAGGGAAAATTT 58.753 42.857 10.67 0.00 0.00 1.82
3979 4541 2.231235 ACGCACATGGAGGGAAAATTTC 59.769 45.455 10.67 0.00 0.00 2.17
3980 4542 2.230992 CGCACATGGAGGGAAAATTTCA 59.769 45.455 8.09 0.00 0.00 2.69
3981 4543 3.588955 GCACATGGAGGGAAAATTTCAC 58.411 45.455 8.09 3.68 0.00 3.18
3982 4544 3.006752 GCACATGGAGGGAAAATTTCACA 59.993 43.478 10.88 2.87 34.83 3.58
3983 4545 4.502950 GCACATGGAGGGAAAATTTCACAA 60.503 41.667 10.88 0.00 34.83 3.33
3984 4546 5.232463 CACATGGAGGGAAAATTTCACAAG 58.768 41.667 10.88 2.52 34.83 3.16
3985 4547 4.901250 ACATGGAGGGAAAATTTCACAAGT 59.099 37.500 10.88 3.07 34.83 3.16
3986 4548 5.366477 ACATGGAGGGAAAATTTCACAAGTT 59.634 36.000 10.88 0.00 34.83 2.66
3987 4549 5.948742 TGGAGGGAAAATTTCACAAGTTT 57.051 34.783 10.88 0.00 34.83 2.66
3988 4550 6.306643 TGGAGGGAAAATTTCACAAGTTTT 57.693 33.333 10.88 0.00 34.83 2.43
3989 4551 6.112058 TGGAGGGAAAATTTCACAAGTTTTG 58.888 36.000 10.88 0.00 34.83 2.44
3990 4552 5.527214 GGAGGGAAAATTTCACAAGTTTTGG 59.473 40.000 10.88 0.00 34.83 3.28
3991 4553 5.436175 AGGGAAAATTTCACAAGTTTTGGG 58.564 37.500 10.88 0.00 34.83 4.12
3992 4554 4.036262 GGGAAAATTTCACAAGTTTTGGGC 59.964 41.667 8.09 0.00 30.39 5.36
3993 4555 4.260579 GGAAAATTTCACAAGTTTTGGGCG 60.261 41.667 8.09 0.00 30.39 6.13
3994 4556 3.810310 AATTTCACAAGTTTTGGGCGA 57.190 38.095 0.00 0.00 32.92 5.54
3995 4557 2.861462 TTTCACAAGTTTTGGGCGAG 57.139 45.000 0.00 0.00 32.92 5.03
3996 4558 2.045561 TTCACAAGTTTTGGGCGAGA 57.954 45.000 0.00 0.00 32.92 4.04
3997 4559 2.270352 TCACAAGTTTTGGGCGAGAT 57.730 45.000 0.00 0.00 32.92 2.75
3998 4560 2.582052 TCACAAGTTTTGGGCGAGATT 58.418 42.857 0.00 0.00 32.92 2.40
3999 4561 2.293122 TCACAAGTTTTGGGCGAGATTG 59.707 45.455 0.00 0.00 32.92 2.67
4000 4562 1.000274 ACAAGTTTTGGGCGAGATTGC 60.000 47.619 0.00 0.00 34.12 3.56
4001 4563 1.000385 CAAGTTTTGGGCGAGATTGCA 60.000 47.619 0.00 0.00 36.28 4.08
4002 4564 0.598065 AGTTTTGGGCGAGATTGCAC 59.402 50.000 0.00 0.00 39.27 4.57
4003 4565 0.388520 GTTTTGGGCGAGATTGCACC 60.389 55.000 0.00 0.00 37.52 5.01
4004 4566 0.539438 TTTTGGGCGAGATTGCACCT 60.539 50.000 0.00 0.00 37.52 4.00
4005 4567 1.243342 TTTGGGCGAGATTGCACCTG 61.243 55.000 0.00 0.00 37.52 4.00
4006 4568 2.123248 TTGGGCGAGATTGCACCTGA 62.123 55.000 0.00 0.00 37.52 3.86
4007 4569 1.377202 GGGCGAGATTGCACCTGAA 60.377 57.895 0.00 0.00 36.28 3.02
4008 4570 0.749454 GGGCGAGATTGCACCTGAAT 60.749 55.000 0.00 0.00 36.28 2.57
4009 4571 1.475034 GGGCGAGATTGCACCTGAATA 60.475 52.381 0.00 0.00 36.28 1.75
4010 4572 2.288666 GGCGAGATTGCACCTGAATAA 58.711 47.619 0.00 0.00 36.28 1.40
4011 4573 2.880890 GGCGAGATTGCACCTGAATAAT 59.119 45.455 0.00 0.00 36.28 1.28
4012 4574 3.316308 GGCGAGATTGCACCTGAATAATT 59.684 43.478 0.00 0.00 36.28 1.40
4013 4575 4.285292 GCGAGATTGCACCTGAATAATTG 58.715 43.478 0.00 0.00 34.15 2.32
4014 4576 4.035558 GCGAGATTGCACCTGAATAATTGA 59.964 41.667 0.00 0.00 34.15 2.57
4015 4577 5.505286 CGAGATTGCACCTGAATAATTGAC 58.495 41.667 0.00 0.00 0.00 3.18
4016 4578 5.065090 CGAGATTGCACCTGAATAATTGACA 59.935 40.000 0.00 0.00 0.00 3.58
4017 4579 6.238566 CGAGATTGCACCTGAATAATTGACAT 60.239 38.462 0.00 0.00 0.00 3.06
4018 4580 6.802608 AGATTGCACCTGAATAATTGACATG 58.197 36.000 0.00 0.00 0.00 3.21
4019 4581 6.604396 AGATTGCACCTGAATAATTGACATGA 59.396 34.615 0.00 0.00 0.00 3.07
4020 4582 5.823209 TGCACCTGAATAATTGACATGAG 57.177 39.130 0.00 0.00 0.00 2.90
4021 4583 5.499313 TGCACCTGAATAATTGACATGAGA 58.501 37.500 0.00 0.00 0.00 3.27
4022 4584 5.945191 TGCACCTGAATAATTGACATGAGAA 59.055 36.000 0.00 0.00 0.00 2.87
4023 4585 6.433716 TGCACCTGAATAATTGACATGAGAAA 59.566 34.615 0.00 0.00 0.00 2.52
4024 4586 7.039853 TGCACCTGAATAATTGACATGAGAAAA 60.040 33.333 0.00 0.00 0.00 2.29
4025 4587 7.977853 GCACCTGAATAATTGACATGAGAAAAT 59.022 33.333 0.00 0.00 0.00 1.82
4033 4595 7.565323 AATTGACATGAGAAAATAGAGGAGC 57.435 36.000 0.00 0.00 0.00 4.70
4034 4596 5.946942 TGACATGAGAAAATAGAGGAGCT 57.053 39.130 0.00 0.00 0.00 4.09
4035 4597 6.305272 TGACATGAGAAAATAGAGGAGCTT 57.695 37.500 0.00 0.00 0.00 3.74
4036 4598 6.111382 TGACATGAGAAAATAGAGGAGCTTG 58.889 40.000 0.00 0.00 0.00 4.01
4037 4599 6.070596 TGACATGAGAAAATAGAGGAGCTTGA 60.071 38.462 0.00 0.00 0.00 3.02
4038 4600 6.112058 ACATGAGAAAATAGAGGAGCTTGAC 58.888 40.000 0.00 0.00 0.00 3.18
4039 4601 5.091261 TGAGAAAATAGAGGAGCTTGACC 57.909 43.478 0.00 0.00 0.00 4.02
4040 4602 4.780021 TGAGAAAATAGAGGAGCTTGACCT 59.220 41.667 0.00 0.00 40.80 3.85
4041 4603 5.958380 TGAGAAAATAGAGGAGCTTGACCTA 59.042 40.000 0.00 0.00 37.93 3.08
4042 4604 6.613271 TGAGAAAATAGAGGAGCTTGACCTAT 59.387 38.462 0.00 0.00 37.93 2.57
4043 4605 7.785028 TGAGAAAATAGAGGAGCTTGACCTATA 59.215 37.037 0.00 0.00 37.93 1.31
4044 4606 8.734593 AGAAAATAGAGGAGCTTGACCTATAT 57.265 34.615 2.09 2.09 41.71 0.86
4045 4607 9.830186 AGAAAATAGAGGAGCTTGACCTATATA 57.170 33.333 7.35 0.00 39.87 0.86
4071 4633 9.768215 AAGGAAATGTAATCAAATCCCTTAGAA 57.232 29.630 0.00 0.00 34.79 2.10
4072 4634 9.768215 AGGAAATGTAATCAAATCCCTTAGAAA 57.232 29.630 0.00 0.00 34.79 2.52
4087 4649 8.857694 TCCCTTAGAAAATTATTCAAACGAGT 57.142 30.769 0.00 0.00 0.00 4.18
4088 4650 8.726988 TCCCTTAGAAAATTATTCAAACGAGTG 58.273 33.333 0.00 0.00 0.00 3.51
4089 4651 7.968405 CCCTTAGAAAATTATTCAAACGAGTGG 59.032 37.037 0.00 0.00 0.00 4.00
4090 4652 8.512138 CCTTAGAAAATTATTCAAACGAGTGGT 58.488 33.333 0.00 0.00 0.00 4.16
4091 4653 9.329913 CTTAGAAAATTATTCAAACGAGTGGTG 57.670 33.333 0.00 0.00 0.00 4.17
4092 4654 7.504924 AGAAAATTATTCAAACGAGTGGTGA 57.495 32.000 0.00 0.00 0.00 4.02
4093 4655 7.936584 AGAAAATTATTCAAACGAGTGGTGAA 58.063 30.769 0.00 5.46 35.83 3.18
4094 4656 8.410141 AGAAAATTATTCAAACGAGTGGTGAAA 58.590 29.630 0.00 0.00 35.07 2.69
4095 4657 7.924103 AAATTATTCAAACGAGTGGTGAAAC 57.076 32.000 0.00 0.00 35.07 2.78
4096 4658 3.602390 ATTCAAACGAGTGGTGAAACG 57.398 42.857 0.00 0.00 38.12 3.60
4097 4659 0.653636 TCAAACGAGTGGTGAAACGC 59.346 50.000 0.00 0.00 38.12 4.84
4098 4660 0.375454 CAAACGAGTGGTGAAACGCA 59.625 50.000 0.00 0.00 38.12 5.24
4099 4661 1.088306 AAACGAGTGGTGAAACGCAA 58.912 45.000 0.00 0.00 38.12 4.85
4100 4662 1.305201 AACGAGTGGTGAAACGCAAT 58.695 45.000 0.00 0.00 38.12 3.56
4101 4663 2.157834 ACGAGTGGTGAAACGCAATA 57.842 45.000 0.00 0.00 38.12 1.90
4102 4664 2.066262 ACGAGTGGTGAAACGCAATAG 58.934 47.619 0.00 0.00 38.12 1.73
4103 4665 2.288579 ACGAGTGGTGAAACGCAATAGA 60.289 45.455 0.00 0.00 38.12 1.98
4104 4666 2.092211 CGAGTGGTGAAACGCAATAGAC 59.908 50.000 0.00 0.00 38.12 2.59
4105 4667 2.415512 GAGTGGTGAAACGCAATAGACC 59.584 50.000 0.00 0.00 38.12 3.85
4106 4668 2.038557 AGTGGTGAAACGCAATAGACCT 59.961 45.455 0.00 0.00 38.12 3.85
4107 4669 2.812011 GTGGTGAAACGCAATAGACCTT 59.188 45.455 0.00 0.00 38.12 3.50
4108 4670 3.998341 GTGGTGAAACGCAATAGACCTTA 59.002 43.478 0.00 0.00 38.12 2.69
4109 4671 4.634443 GTGGTGAAACGCAATAGACCTTAT 59.366 41.667 0.00 0.00 38.12 1.73
4110 4672 5.813672 GTGGTGAAACGCAATAGACCTTATA 59.186 40.000 0.00 0.00 38.12 0.98
4111 4673 6.482308 GTGGTGAAACGCAATAGACCTTATAT 59.518 38.462 0.00 0.00 38.12 0.86
4112 4674 7.012044 GTGGTGAAACGCAATAGACCTTATATT 59.988 37.037 0.00 0.00 38.12 1.28
4113 4675 7.554835 TGGTGAAACGCAATAGACCTTATATTT 59.445 33.333 0.00 0.00 38.12 1.40
4114 4676 8.403236 GGTGAAACGCAATAGACCTTATATTTT 58.597 33.333 0.00 0.00 38.12 1.82
4115 4677 9.221775 GTGAAACGCAATAGACCTTATATTTTG 57.778 33.333 0.00 0.00 0.00 2.44
4116 4678 8.402472 TGAAACGCAATAGACCTTATATTTTGG 58.598 33.333 0.00 0.00 0.00 3.28
4117 4679 8.514330 AAACGCAATAGACCTTATATTTTGGA 57.486 30.769 0.00 0.00 0.00 3.53
4118 4680 7.492352 ACGCAATAGACCTTATATTTTGGAC 57.508 36.000 0.00 0.00 0.00 4.02
4119 4681 7.280356 ACGCAATAGACCTTATATTTTGGACT 58.720 34.615 0.00 0.00 0.00 3.85
4120 4682 7.773690 ACGCAATAGACCTTATATTTTGGACTT 59.226 33.333 0.00 0.00 0.00 3.01
4121 4683 8.621286 CGCAATAGACCTTATATTTTGGACTTT 58.379 33.333 0.00 0.00 0.00 2.66
4127 4689 9.807921 AGACCTTATATTTTGGACTTTTTCTCA 57.192 29.630 0.00 0.00 0.00 3.27
4157 4719 9.720769 ATTTATACACCTTATATCAAGGAACGG 57.279 33.333 9.96 0.05 39.81 4.44
4158 4720 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
4159 4721 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
4160 4722 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
4161 4723 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
4162 4724 3.901844 CCTTATATCAAGGAACGGAGGGA 59.098 47.826 0.00 0.00 39.81 4.20
4163 4725 4.021016 CCTTATATCAAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 39.81 4.30
4179 4741 7.450903 ACGGAGGGAGTAAATAAATAGAATGG 58.549 38.462 0.00 0.00 0.00 3.16
4213 4775 7.174426 AGTTTACATACCAGTCCTTTTAGTTGC 59.826 37.037 0.00 0.00 0.00 4.17
4556 5122 1.924524 CGTTGCACGGTACTTGGATAG 59.075 52.381 0.00 0.00 38.08 2.08
4723 7953 7.219322 ACCTAAAACACCTACGTACAGAATTT 58.781 34.615 0.00 0.00 0.00 1.82
4778 8371 6.739331 AAGAAGGGAGATAGAACATACCTG 57.261 41.667 0.00 0.00 0.00 4.00
4856 8449 5.887598 TGTCGATTGGATTGGAATTCAGAAT 59.112 36.000 7.93 4.78 0.00 2.40
4912 8506 4.293494 AGGACTGGAGCTGAGATTTATGA 58.707 43.478 0.00 0.00 0.00 2.15
4998 8592 1.003580 AGCTGGGAATTGATGACGTGT 59.996 47.619 0.00 0.00 0.00 4.49
5109 8704 6.938030 TCCCAGACGTATCAAACACTATTTTT 59.062 34.615 0.00 0.00 0.00 1.94
5167 8765 2.280552 TATCGGGGCAGTATCCGGC 61.281 63.158 0.00 0.00 45.69 6.13
5271 8899 2.670414 GAGCAAAGTTGACTGATCCTCG 59.330 50.000 0.00 0.00 0.00 4.63
5358 8986 5.397447 CCCAGGTATAGCTTATGACAAACCA 60.397 44.000 0.55 0.00 0.00 3.67
5359 8987 6.119536 CCAGGTATAGCTTATGACAAACCAA 58.880 40.000 0.55 0.00 0.00 3.67
5360 8988 6.601613 CCAGGTATAGCTTATGACAAACCAAA 59.398 38.462 0.55 0.00 0.00 3.28
5408 9073 1.073199 AAACCTCAGGGCTTCCACG 59.927 57.895 0.00 0.00 35.63 4.94
5421 9086 2.603560 GCTTCCACGTTATGTCTACTGC 59.396 50.000 0.00 0.00 0.00 4.40
5595 9266 5.391950 GCGTAAGAAGATCCATGCTTTCAAA 60.392 40.000 0.00 0.00 43.02 2.69
5709 9380 7.069986 AGAAGGTAACATCTCTATTCCTAGCA 58.930 38.462 0.00 0.00 41.81 3.49
5828 9505 6.844917 ACCCTAACTAGCCTATCTACAATTGT 59.155 38.462 16.68 16.68 0.00 2.71
5839 9516 8.088365 GCCTATCTACAATTGTTTCCTTTTGTT 58.912 33.333 17.78 0.00 34.39 2.83
5866 9543 4.340097 TGGACTGTTCACTTAGACTTCGAA 59.660 41.667 0.00 0.00 0.00 3.71
5975 9654 1.538135 GGTGGGGGTCACTGGTAGT 60.538 63.158 0.00 0.00 45.38 2.73
6055 9734 1.866015 TCTGGGGATACACTGGACTG 58.134 55.000 0.00 0.00 44.55 3.51
6141 9821 4.106197 GTCAGAGCTTGTACTCCGTAATG 58.894 47.826 0.00 0.00 37.39 1.90
6233 9914 9.566432 AGTCTCAATTTTGTGAAGAGATAAACT 57.434 29.630 0.00 0.00 37.63 2.66
6409 10091 4.499019 CGGTGTACATTTGCAAGAAAACCT 60.499 41.667 0.00 0.00 0.00 3.50
6411 10093 4.982295 GTGTACATTTGCAAGAAAACCTCC 59.018 41.667 0.00 0.00 0.00 4.30
6700 10387 1.233285 CGCTGGTGCTGAGCTTCTTT 61.233 55.000 5.83 0.00 36.97 2.52
6805 13816 9.761504 AGTCACACATCATAAATAGATCTCTTG 57.238 33.333 0.00 0.00 0.00 3.02
6971 13982 0.322277 CCTGAACAGAGCACCTGCAT 60.322 55.000 3.19 0.00 46.81 3.96
7076 14087 0.874607 GAAAGTGTGACACCGAGCGT 60.875 55.000 12.81 0.00 34.49 5.07
7080 14091 0.595567 GTGTGACACCGAGCGTTGTA 60.596 55.000 3.92 0.00 0.00 2.41
7164 14175 5.447778 ACCTTCAGAACATGGATCTTCAT 57.552 39.130 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.280643 CCACCGAGTTGATCATATTAGTCAA 58.719 40.000 0.00 0.00 0.00 3.18
130 131 2.576615 GAGTTTGCCTGACCAACTCTT 58.423 47.619 1.52 0.00 0.00 2.85
454 456 2.691409 TTGAGTCCATAGGAAAGCCG 57.309 50.000 0.00 0.00 39.96 5.52
710 714 3.896888 TCCTAACCCTCGAGTTTGTGTAA 59.103 43.478 12.31 0.00 0.00 2.41
776 780 2.461695 TCCCAAACCACTGCTCAAAAA 58.538 42.857 0.00 0.00 0.00 1.94
777 781 2.151502 TCCCAAACCACTGCTCAAAA 57.848 45.000 0.00 0.00 0.00 2.44
778 782 2.151502 TTCCCAAACCACTGCTCAAA 57.848 45.000 0.00 0.00 0.00 2.69
779 783 2.380064 ATTCCCAAACCACTGCTCAA 57.620 45.000 0.00 0.00 0.00 3.02
780 784 3.181434 ACTTATTCCCAAACCACTGCTCA 60.181 43.478 0.00 0.00 0.00 4.26
781 785 3.421844 ACTTATTCCCAAACCACTGCTC 58.578 45.455 0.00 0.00 0.00 4.26
782 786 3.525800 ACTTATTCCCAAACCACTGCT 57.474 42.857 0.00 0.00 0.00 4.24
783 787 4.600692 AAACTTATTCCCAAACCACTGC 57.399 40.909 0.00 0.00 0.00 4.40
807 811 6.943718 ACGTATTCCCAAACCAGATTCTAAAA 59.056 34.615 0.00 0.00 0.00 1.52
811 815 4.569719 ACGTATTCCCAAACCAGATTCT 57.430 40.909 0.00 0.00 0.00 2.40
812 816 5.638596 AAACGTATTCCCAAACCAGATTC 57.361 39.130 0.00 0.00 0.00 2.52
813 817 6.413783 AAAAACGTATTCCCAAACCAGATT 57.586 33.333 0.00 0.00 0.00 2.40
940 947 0.609957 TGCTGGGTGGATGAGCAAAG 60.610 55.000 0.00 0.00 39.75 2.77
946 953 1.076549 GGGTTTGCTGGGTGGATGA 59.923 57.895 0.00 0.00 0.00 2.92
995 1002 0.685458 CTCTTCCAATTGGGCTGGGG 60.685 60.000 24.29 8.29 36.21 4.96
1044 1051 3.508012 TGTTCGTGGTGGGGATTTTTATG 59.492 43.478 0.00 0.00 0.00 1.90
1081 1092 5.441709 TGGTTCGTTTTGGGAAATCTTAC 57.558 39.130 0.00 0.00 0.00 2.34
1082 1093 6.466885 TTTGGTTCGTTTTGGGAAATCTTA 57.533 33.333 0.00 0.00 0.00 2.10
1083 1094 5.346181 TTTGGTTCGTTTTGGGAAATCTT 57.654 34.783 0.00 0.00 0.00 2.40
1084 1095 5.105106 ACTTTTGGTTCGTTTTGGGAAATCT 60.105 36.000 0.00 0.00 0.00 2.40
1108 1119 1.740296 GCGCTGCCCGAGAGTTTTA 60.740 57.895 0.00 0.00 40.02 1.52
1261 1277 2.706071 GAGGGGGAGATGAGGGGT 59.294 66.667 0.00 0.00 0.00 4.95
1313 1333 4.398319 GAAACCAGAACTGATGGAGGAAA 58.602 43.478 3.19 0.00 40.51 3.13
1368 1388 1.069906 CGTAGCTGCGCCCAAATTATC 60.070 52.381 12.24 0.00 0.00 1.75
1526 1548 7.068348 AGTGATAAGAGCAGGTTATTTCGTCTA 59.932 37.037 0.00 0.00 0.00 2.59
1529 1551 5.978814 AGTGATAAGAGCAGGTTATTTCGT 58.021 37.500 0.00 0.00 0.00 3.85
1606 1628 5.509501 GCAGATTTCCACAGATTGTTCCAAA 60.510 40.000 0.00 0.00 0.00 3.28
1757 1791 2.549754 GTGTCAATCCAGTGTTGTCCAG 59.450 50.000 0.00 0.00 0.00 3.86
1809 1843 8.540388 CACCAATACAATACAGCCCTAGTATAT 58.460 37.037 0.00 0.00 32.19 0.86
1839 1873 5.683876 TCAAAACATTTTCCTCCACCAAA 57.316 34.783 0.00 0.00 0.00 3.28
1859 1894 1.064832 TCAAATGGGCGATGGACATCA 60.065 47.619 12.33 0.00 37.69 3.07
1939 2004 2.968655 GCACTTTACAAAGCGTTAACCG 59.031 45.455 0.00 0.00 39.63 4.44
2038 2103 3.546724 AGAGTGAGTAGAATCTAGCGCA 58.453 45.455 11.47 0.00 0.00 6.09
2162 2227 0.673644 CACCTTGGCTAGTGTTCGGG 60.674 60.000 0.00 0.00 0.00 5.14
2207 2761 3.618690 AAGTGCAAGATCTACCCTGAC 57.381 47.619 0.00 0.00 0.00 3.51
2227 2781 4.657408 TGCCCTGCCATGTGCGAA 62.657 61.111 0.00 0.00 45.60 4.70
2242 2796 7.425577 AAAAAGGAATTTCAATAGCAGTTGC 57.574 32.000 0.00 0.00 42.49 4.17
2346 2901 9.261035 ACATTACCCACAATGTAAATAAATGGA 57.739 29.630 0.00 0.00 45.13 3.41
2352 2907 9.915629 GACAAAACATTACCCACAATGTAAATA 57.084 29.630 2.17 0.00 46.00 1.40
2371 2926 4.823790 ACCTACAATTGGACGACAAAAC 57.176 40.909 10.83 0.00 43.46 2.43
2423 2978 5.427378 TCGACATATTCAGAAATTCCAGCA 58.573 37.500 0.00 0.00 0.00 4.41
2444 2999 5.118990 TCTTGAAGCTCCTTTTCCATATCG 58.881 41.667 0.00 0.00 0.00 2.92
2514 3069 9.585099 AAAATAAAAAGCATCTGATAATTCGCA 57.415 25.926 0.00 0.00 0.00 5.10
3081 3636 1.536709 CCAGCAGAATAATTTGGCGGC 60.537 52.381 0.00 0.00 0.00 6.53
3163 3718 4.389992 AGTTATGATGAACAGAAGTGCACG 59.610 41.667 12.01 0.00 35.69 5.34
3232 3787 2.425143 TTCATGGGATTGTGAGAGGC 57.575 50.000 0.00 0.00 0.00 4.70
3374 3933 5.816258 TCAGCTGATCAAACAAATTGCAAAA 59.184 32.000 13.74 0.00 38.98 2.44
3452 4011 2.755103 GTTTCCCCAGCCTTCATAACTG 59.245 50.000 0.00 0.00 0.00 3.16
3503 4062 4.449405 GTCAAAGACAGAGACTTAAGCCAC 59.551 45.833 1.29 0.00 32.09 5.01
3636 4195 2.945668 ACTCAACAACTTCAGAACCAGC 59.054 45.455 0.00 0.00 0.00 4.85
3674 4233 6.315551 GCTGCAGATGAAAAGCATATATGAG 58.684 40.000 20.43 1.36 37.34 2.90
3920 4482 8.573035 CGTGCCAAAAATTATACACCCTATATT 58.427 33.333 0.00 0.00 0.00 1.28
3921 4483 7.175990 CCGTGCCAAAAATTATACACCCTATAT 59.824 37.037 0.00 0.00 0.00 0.86
3922 4484 6.487331 CCGTGCCAAAAATTATACACCCTATA 59.513 38.462 0.00 0.00 0.00 1.31
3923 4485 5.300792 CCGTGCCAAAAATTATACACCCTAT 59.699 40.000 0.00 0.00 0.00 2.57
3924 4486 4.641094 CCGTGCCAAAAATTATACACCCTA 59.359 41.667 0.00 0.00 0.00 3.53
3925 4487 3.445805 CCGTGCCAAAAATTATACACCCT 59.554 43.478 0.00 0.00 0.00 4.34
3926 4488 3.444388 TCCGTGCCAAAAATTATACACCC 59.556 43.478 0.00 0.00 0.00 4.61
3927 4489 4.705337 TCCGTGCCAAAAATTATACACC 57.295 40.909 0.00 0.00 0.00 4.16
3928 4490 7.589574 AATTTCCGTGCCAAAAATTATACAC 57.410 32.000 0.00 0.00 32.38 2.90
3929 4491 9.706691 TTTAATTTCCGTGCCAAAAATTATACA 57.293 25.926 0.00 0.00 35.75 2.29
3932 4494 9.495572 TTCTTTAATTTCCGTGCCAAAAATTAT 57.504 25.926 0.00 0.00 35.75 1.28
3933 4495 8.766151 GTTCTTTAATTTCCGTGCCAAAAATTA 58.234 29.630 0.00 0.00 35.07 1.40
3934 4496 7.517575 CGTTCTTTAATTTCCGTGCCAAAAATT 60.518 33.333 0.00 0.00 36.73 1.82
3935 4497 6.074034 CGTTCTTTAATTTCCGTGCCAAAAAT 60.074 34.615 0.00 0.00 0.00 1.82
3936 4498 5.232414 CGTTCTTTAATTTCCGTGCCAAAAA 59.768 36.000 0.00 0.00 0.00 1.94
3937 4499 4.740695 CGTTCTTTAATTTCCGTGCCAAAA 59.259 37.500 0.00 0.00 0.00 2.44
3938 4500 4.291783 CGTTCTTTAATTTCCGTGCCAAA 58.708 39.130 0.00 0.00 0.00 3.28
3939 4501 3.854045 GCGTTCTTTAATTTCCGTGCCAA 60.854 43.478 0.00 0.00 0.00 4.52
3940 4502 2.350964 GCGTTCTTTAATTTCCGTGCCA 60.351 45.455 0.00 0.00 0.00 4.92
3941 4503 2.247637 GCGTTCTTTAATTTCCGTGCC 58.752 47.619 0.00 0.00 0.00 5.01
3942 4504 2.655001 GTGCGTTCTTTAATTTCCGTGC 59.345 45.455 0.00 0.00 0.00 5.34
3943 4505 3.879427 TGTGCGTTCTTTAATTTCCGTG 58.121 40.909 0.00 0.00 0.00 4.94
3944 4506 4.472286 CATGTGCGTTCTTTAATTTCCGT 58.528 39.130 0.00 0.00 0.00 4.69
3945 4507 3.851403 CCATGTGCGTTCTTTAATTTCCG 59.149 43.478 0.00 0.00 0.00 4.30
3946 4508 5.054390 TCCATGTGCGTTCTTTAATTTCC 57.946 39.130 0.00 0.00 0.00 3.13
3947 4509 5.095490 CCTCCATGTGCGTTCTTTAATTTC 58.905 41.667 0.00 0.00 0.00 2.17
3948 4510 4.082245 CCCTCCATGTGCGTTCTTTAATTT 60.082 41.667 0.00 0.00 0.00 1.82
3949 4511 3.443681 CCCTCCATGTGCGTTCTTTAATT 59.556 43.478 0.00 0.00 0.00 1.40
3950 4512 3.016736 CCCTCCATGTGCGTTCTTTAAT 58.983 45.455 0.00 0.00 0.00 1.40
3951 4513 2.039216 TCCCTCCATGTGCGTTCTTTAA 59.961 45.455 0.00 0.00 0.00 1.52
3952 4514 1.626321 TCCCTCCATGTGCGTTCTTTA 59.374 47.619 0.00 0.00 0.00 1.85
3953 4515 0.400213 TCCCTCCATGTGCGTTCTTT 59.600 50.000 0.00 0.00 0.00 2.52
3954 4516 0.400213 TTCCCTCCATGTGCGTTCTT 59.600 50.000 0.00 0.00 0.00 2.52
3955 4517 0.400213 TTTCCCTCCATGTGCGTTCT 59.600 50.000 0.00 0.00 0.00 3.01
3956 4518 1.243902 TTTTCCCTCCATGTGCGTTC 58.756 50.000 0.00 0.00 0.00 3.95
3957 4519 1.923356 ATTTTCCCTCCATGTGCGTT 58.077 45.000 0.00 0.00 0.00 4.84
3958 4520 1.923356 AATTTTCCCTCCATGTGCGT 58.077 45.000 0.00 0.00 0.00 5.24
3959 4521 2.230992 TGAAATTTTCCCTCCATGTGCG 59.769 45.455 6.68 0.00 0.00 5.34
3960 4522 3.006752 TGTGAAATTTTCCCTCCATGTGC 59.993 43.478 6.68 0.00 0.00 4.57
3961 4523 4.870123 TGTGAAATTTTCCCTCCATGTG 57.130 40.909 6.68 0.00 0.00 3.21
3962 4524 4.901250 ACTTGTGAAATTTTCCCTCCATGT 59.099 37.500 6.68 4.54 0.00 3.21
3963 4525 5.473066 ACTTGTGAAATTTTCCCTCCATG 57.527 39.130 6.68 0.00 0.00 3.66
3964 4526 6.499106 AAACTTGTGAAATTTTCCCTCCAT 57.501 33.333 6.68 0.00 0.00 3.41
3965 4527 5.948742 AAACTTGTGAAATTTTCCCTCCA 57.051 34.783 6.68 0.00 0.00 3.86
3966 4528 5.527214 CCAAAACTTGTGAAATTTTCCCTCC 59.473 40.000 6.68 0.00 0.00 4.30
3967 4529 5.527214 CCCAAAACTTGTGAAATTTTCCCTC 59.473 40.000 6.68 0.00 0.00 4.30
3968 4530 5.436175 CCCAAAACTTGTGAAATTTTCCCT 58.564 37.500 6.68 0.00 0.00 4.20
3969 4531 4.036262 GCCCAAAACTTGTGAAATTTTCCC 59.964 41.667 6.68 0.00 0.00 3.97
3970 4532 4.260579 CGCCCAAAACTTGTGAAATTTTCC 60.261 41.667 6.68 0.00 0.00 3.13
3971 4533 4.568760 TCGCCCAAAACTTGTGAAATTTTC 59.431 37.500 2.05 2.05 0.00 2.29
3972 4534 4.508662 TCGCCCAAAACTTGTGAAATTTT 58.491 34.783 0.00 0.00 0.00 1.82
3973 4535 4.119136 CTCGCCCAAAACTTGTGAAATTT 58.881 39.130 0.00 0.00 0.00 1.82
3974 4536 3.383185 TCTCGCCCAAAACTTGTGAAATT 59.617 39.130 0.00 0.00 0.00 1.82
3975 4537 2.955660 TCTCGCCCAAAACTTGTGAAAT 59.044 40.909 0.00 0.00 0.00 2.17
3976 4538 2.370349 TCTCGCCCAAAACTTGTGAAA 58.630 42.857 0.00 0.00 0.00 2.69
3977 4539 2.045561 TCTCGCCCAAAACTTGTGAA 57.954 45.000 0.00 0.00 0.00 3.18
3978 4540 2.270352 ATCTCGCCCAAAACTTGTGA 57.730 45.000 0.00 0.00 0.00 3.58
3979 4541 2.664916 CAATCTCGCCCAAAACTTGTG 58.335 47.619 0.00 0.00 0.00 3.33
3980 4542 1.000274 GCAATCTCGCCCAAAACTTGT 60.000 47.619 0.00 0.00 0.00 3.16
3981 4543 1.000385 TGCAATCTCGCCCAAAACTTG 60.000 47.619 0.00 0.00 0.00 3.16
3982 4544 1.000274 GTGCAATCTCGCCCAAAACTT 60.000 47.619 0.00 0.00 0.00 2.66
3983 4545 0.598065 GTGCAATCTCGCCCAAAACT 59.402 50.000 0.00 0.00 0.00 2.66
3984 4546 0.388520 GGTGCAATCTCGCCCAAAAC 60.389 55.000 0.00 0.00 0.00 2.43
3985 4547 0.539438 AGGTGCAATCTCGCCCAAAA 60.539 50.000 0.00 0.00 37.33 2.44
3986 4548 1.074775 AGGTGCAATCTCGCCCAAA 59.925 52.632 0.00 0.00 37.33 3.28
3987 4549 1.675310 CAGGTGCAATCTCGCCCAA 60.675 57.895 0.00 0.00 37.33 4.12
3988 4550 2.046023 CAGGTGCAATCTCGCCCA 60.046 61.111 0.00 0.00 37.33 5.36
3989 4551 0.749454 ATTCAGGTGCAATCTCGCCC 60.749 55.000 0.00 0.00 37.33 6.13
3990 4552 1.953559 TATTCAGGTGCAATCTCGCC 58.046 50.000 0.00 0.00 36.90 5.54
3991 4553 4.035558 TCAATTATTCAGGTGCAATCTCGC 59.964 41.667 0.00 0.00 0.00 5.03
3992 4554 5.065090 TGTCAATTATTCAGGTGCAATCTCG 59.935 40.000 0.00 0.00 0.00 4.04
3993 4555 6.441093 TGTCAATTATTCAGGTGCAATCTC 57.559 37.500 0.00 0.00 0.00 2.75
3994 4556 6.604396 TCATGTCAATTATTCAGGTGCAATCT 59.396 34.615 0.00 0.00 0.00 2.40
3995 4557 6.798482 TCATGTCAATTATTCAGGTGCAATC 58.202 36.000 0.00 0.00 0.00 2.67
3996 4558 6.604396 TCTCATGTCAATTATTCAGGTGCAAT 59.396 34.615 0.00 0.00 0.00 3.56
3997 4559 5.945191 TCTCATGTCAATTATTCAGGTGCAA 59.055 36.000 0.00 0.00 0.00 4.08
3998 4560 5.499313 TCTCATGTCAATTATTCAGGTGCA 58.501 37.500 0.00 0.00 0.00 4.57
3999 4561 6.441093 TTCTCATGTCAATTATTCAGGTGC 57.559 37.500 0.00 0.00 0.00 5.01
4007 4569 9.282569 GCTCCTCTATTTTCTCATGTCAATTAT 57.717 33.333 0.00 0.00 0.00 1.28
4008 4570 8.489489 AGCTCCTCTATTTTCTCATGTCAATTA 58.511 33.333 0.00 0.00 0.00 1.40
4009 4571 7.344913 AGCTCCTCTATTTTCTCATGTCAATT 58.655 34.615 0.00 0.00 0.00 2.32
4010 4572 6.897986 AGCTCCTCTATTTTCTCATGTCAAT 58.102 36.000 0.00 0.00 0.00 2.57
4011 4573 6.305272 AGCTCCTCTATTTTCTCATGTCAA 57.695 37.500 0.00 0.00 0.00 3.18
4012 4574 5.946942 AGCTCCTCTATTTTCTCATGTCA 57.053 39.130 0.00 0.00 0.00 3.58
4013 4575 6.257630 GTCAAGCTCCTCTATTTTCTCATGTC 59.742 42.308 0.00 0.00 0.00 3.06
4014 4576 6.112058 GTCAAGCTCCTCTATTTTCTCATGT 58.888 40.000 0.00 0.00 0.00 3.21
4015 4577 5.526846 GGTCAAGCTCCTCTATTTTCTCATG 59.473 44.000 0.00 0.00 0.00 3.07
4016 4578 5.428131 AGGTCAAGCTCCTCTATTTTCTCAT 59.572 40.000 0.00 0.00 0.00 2.90
4017 4579 4.780021 AGGTCAAGCTCCTCTATTTTCTCA 59.220 41.667 0.00 0.00 0.00 3.27
4018 4580 5.351948 AGGTCAAGCTCCTCTATTTTCTC 57.648 43.478 0.00 0.00 0.00 2.87
4019 4581 8.734593 ATATAGGTCAAGCTCCTCTATTTTCT 57.265 34.615 0.00 0.00 36.60 2.52
4022 4584 9.041354 CCTTATATAGGTCAAGCTCCTCTATTT 57.959 37.037 0.00 0.00 39.39 1.40
4023 4585 8.402683 TCCTTATATAGGTCAAGCTCCTCTATT 58.597 37.037 0.00 0.00 45.03 1.73
4024 4586 7.945278 TCCTTATATAGGTCAAGCTCCTCTAT 58.055 38.462 0.00 0.13 45.03 1.98
4025 4587 7.344599 TCCTTATATAGGTCAAGCTCCTCTA 57.655 40.000 0.00 0.00 45.03 2.43
4026 4588 6.220881 TCCTTATATAGGTCAAGCTCCTCT 57.779 41.667 0.00 0.00 45.03 3.69
4027 4589 6.919775 TTCCTTATATAGGTCAAGCTCCTC 57.080 41.667 0.00 0.00 45.03 3.71
4028 4590 7.293535 ACATTTCCTTATATAGGTCAAGCTCCT 59.706 37.037 0.00 0.00 45.03 3.69
4029 4591 7.454225 ACATTTCCTTATATAGGTCAAGCTCC 58.546 38.462 0.00 0.00 45.03 4.70
4030 4592 9.998106 TTACATTTCCTTATATAGGTCAAGCTC 57.002 33.333 0.00 0.00 45.03 4.09
4045 4607 9.768215 TTCTAAGGGATTTGATTACATTTCCTT 57.232 29.630 0.00 0.00 31.95 3.36
4046 4608 9.768215 TTTCTAAGGGATTTGATTACATTTCCT 57.232 29.630 0.00 0.00 31.95 3.36
4061 4623 9.462606 ACTCGTTTGAATAATTTTCTAAGGGAT 57.537 29.630 12.29 0.00 0.00 3.85
4062 4624 8.726988 CACTCGTTTGAATAATTTTCTAAGGGA 58.273 33.333 12.29 7.20 0.00 4.20
4063 4625 7.968405 CCACTCGTTTGAATAATTTTCTAAGGG 59.032 37.037 12.29 0.00 0.00 3.95
4064 4626 8.512138 ACCACTCGTTTGAATAATTTTCTAAGG 58.488 33.333 0.00 0.00 0.00 2.69
4065 4627 9.329913 CACCACTCGTTTGAATAATTTTCTAAG 57.670 33.333 0.00 0.00 0.00 2.18
4066 4628 9.058174 TCACCACTCGTTTGAATAATTTTCTAA 57.942 29.630 0.00 0.00 0.00 2.10
4067 4629 8.610248 TCACCACTCGTTTGAATAATTTTCTA 57.390 30.769 0.00 0.00 0.00 2.10
4068 4630 7.504924 TCACCACTCGTTTGAATAATTTTCT 57.495 32.000 0.00 0.00 0.00 2.52
4069 4631 8.476925 GTTTCACCACTCGTTTGAATAATTTTC 58.523 33.333 0.00 0.00 0.00 2.29
4070 4632 7.166804 CGTTTCACCACTCGTTTGAATAATTTT 59.833 33.333 0.00 0.00 0.00 1.82
4071 4633 6.635239 CGTTTCACCACTCGTTTGAATAATTT 59.365 34.615 0.00 0.00 0.00 1.82
4072 4634 6.140110 CGTTTCACCACTCGTTTGAATAATT 58.860 36.000 0.00 0.00 0.00 1.40
4073 4635 5.685841 CGTTTCACCACTCGTTTGAATAAT 58.314 37.500 0.00 0.00 0.00 1.28
4074 4636 4.553156 GCGTTTCACCACTCGTTTGAATAA 60.553 41.667 0.00 0.00 0.00 1.40
4075 4637 3.059461 GCGTTTCACCACTCGTTTGAATA 60.059 43.478 0.00 0.00 0.00 1.75
4076 4638 2.286772 GCGTTTCACCACTCGTTTGAAT 60.287 45.455 0.00 0.00 0.00 2.57
4077 4639 1.062880 GCGTTTCACCACTCGTTTGAA 59.937 47.619 0.00 0.00 0.00 2.69
4078 4640 0.653636 GCGTTTCACCACTCGTTTGA 59.346 50.000 0.00 0.00 0.00 2.69
4079 4641 0.375454 TGCGTTTCACCACTCGTTTG 59.625 50.000 0.00 0.00 0.00 2.93
4080 4642 1.088306 TTGCGTTTCACCACTCGTTT 58.912 45.000 0.00 0.00 0.00 3.60
4081 4643 1.305201 ATTGCGTTTCACCACTCGTT 58.695 45.000 0.00 0.00 0.00 3.85
4082 4644 2.066262 CTATTGCGTTTCACCACTCGT 58.934 47.619 0.00 0.00 0.00 4.18
4083 4645 2.092211 GTCTATTGCGTTTCACCACTCG 59.908 50.000 0.00 0.00 0.00 4.18
4084 4646 2.415512 GGTCTATTGCGTTTCACCACTC 59.584 50.000 0.00 0.00 0.00 3.51
4085 4647 2.038557 AGGTCTATTGCGTTTCACCACT 59.961 45.455 0.00 0.00 0.00 4.00
4086 4648 2.423577 AGGTCTATTGCGTTTCACCAC 58.576 47.619 0.00 0.00 0.00 4.16
4087 4649 2.851263 AGGTCTATTGCGTTTCACCA 57.149 45.000 0.00 0.00 0.00 4.17
4088 4650 7.492352 AATATAAGGTCTATTGCGTTTCACC 57.508 36.000 0.00 0.00 0.00 4.02
4089 4651 9.221775 CAAAATATAAGGTCTATTGCGTTTCAC 57.778 33.333 0.00 0.00 0.00 3.18
4090 4652 8.402472 CCAAAATATAAGGTCTATTGCGTTTCA 58.598 33.333 0.00 0.00 0.00 2.69
4091 4653 8.617809 TCCAAAATATAAGGTCTATTGCGTTTC 58.382 33.333 0.00 0.00 0.00 2.78
4092 4654 8.403236 GTCCAAAATATAAGGTCTATTGCGTTT 58.597 33.333 0.00 0.00 0.00 3.60
4093 4655 7.773690 AGTCCAAAATATAAGGTCTATTGCGTT 59.226 33.333 0.00 0.00 0.00 4.84
4094 4656 7.280356 AGTCCAAAATATAAGGTCTATTGCGT 58.720 34.615 0.00 0.00 0.00 5.24
4095 4657 7.730364 AGTCCAAAATATAAGGTCTATTGCG 57.270 36.000 0.00 0.00 0.00 4.85
4101 4663 9.807921 TGAGAAAAAGTCCAAAATATAAGGTCT 57.192 29.630 0.00 0.00 0.00 3.85
4131 4693 9.720769 CCGTTCCTTGATATAAGGTGTATAAAT 57.279 33.333 5.67 0.00 38.55 1.40
4132 4694 8.926374 TCCGTTCCTTGATATAAGGTGTATAAA 58.074 33.333 5.67 0.00 38.55 1.40
4133 4695 8.481492 TCCGTTCCTTGATATAAGGTGTATAA 57.519 34.615 5.67 0.00 38.55 0.98
4134 4696 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
4135 4697 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
4136 4698 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
4137 4699 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
4138 4700 4.503296 CCCTCCGTTCCTTGATATAAGGTG 60.503 50.000 5.67 0.00 38.55 4.00
4139 4701 3.646637 CCCTCCGTTCCTTGATATAAGGT 59.353 47.826 5.67 0.00 38.55 3.50
4140 4702 3.901844 TCCCTCCGTTCCTTGATATAAGG 59.098 47.826 0.00 0.00 38.78 2.69
4141 4703 4.589374 ACTCCCTCCGTTCCTTGATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
4142 4704 4.553678 ACTCCCTCCGTTCCTTGATATAA 58.446 43.478 0.00 0.00 0.00 0.98
4143 4705 4.194678 ACTCCCTCCGTTCCTTGATATA 57.805 45.455 0.00 0.00 0.00 0.86
4144 4706 3.047695 ACTCCCTCCGTTCCTTGATAT 57.952 47.619 0.00 0.00 0.00 1.63
4145 4707 2.544844 ACTCCCTCCGTTCCTTGATA 57.455 50.000 0.00 0.00 0.00 2.15
4146 4708 2.544844 TACTCCCTCCGTTCCTTGAT 57.455 50.000 0.00 0.00 0.00 2.57
4147 4709 2.314071 TTACTCCCTCCGTTCCTTGA 57.686 50.000 0.00 0.00 0.00 3.02
4148 4710 3.629142 ATTTACTCCCTCCGTTCCTTG 57.371 47.619 0.00 0.00 0.00 3.61
4149 4711 5.767277 TTTATTTACTCCCTCCGTTCCTT 57.233 39.130 0.00 0.00 0.00 3.36
4150 4712 5.970501 ATTTATTTACTCCCTCCGTTCCT 57.029 39.130 0.00 0.00 0.00 3.36
4151 4713 7.059202 TCTATTTATTTACTCCCTCCGTTCC 57.941 40.000 0.00 0.00 0.00 3.62
4152 4714 8.989980 CATTCTATTTATTTACTCCCTCCGTTC 58.010 37.037 0.00 0.00 0.00 3.95
4153 4715 7.937394 CCATTCTATTTATTTACTCCCTCCGTT 59.063 37.037 0.00 0.00 0.00 4.44
4154 4716 7.072076 ACCATTCTATTTATTTACTCCCTCCGT 59.928 37.037 0.00 0.00 0.00 4.69
4155 4717 7.387948 CACCATTCTATTTATTTACTCCCTCCG 59.612 40.741 0.00 0.00 0.00 4.63
4156 4718 7.665974 CCACCATTCTATTTATTTACTCCCTCC 59.334 40.741 0.00 0.00 0.00 4.30
4157 4719 7.175119 GCCACCATTCTATTTATTTACTCCCTC 59.825 40.741 0.00 0.00 0.00 4.30
4158 4720 7.004691 GCCACCATTCTATTTATTTACTCCCT 58.995 38.462 0.00 0.00 0.00 4.20
4159 4721 7.004691 AGCCACCATTCTATTTATTTACTCCC 58.995 38.462 0.00 0.00 0.00 4.30
4160 4722 8.465273 AAGCCACCATTCTATTTATTTACTCC 57.535 34.615 0.00 0.00 0.00 3.85
4161 4723 9.120538 TGAAGCCACCATTCTATTTATTTACTC 57.879 33.333 0.00 0.00 0.00 2.59
4162 4724 9.125026 CTGAAGCCACCATTCTATTTATTTACT 57.875 33.333 0.00 0.00 0.00 2.24
4163 4725 8.903820 ACTGAAGCCACCATTCTATTTATTTAC 58.096 33.333 0.00 0.00 0.00 2.01
4179 4741 4.324267 ACTGGTATGTAAACTGAAGCCAC 58.676 43.478 0.00 0.00 0.00 5.01
4213 4775 6.422776 AAACTGATATGTAAACTGAAGCGG 57.577 37.500 0.00 0.00 0.00 5.52
4556 5122 2.523015 CCGTATTGCGTATCCGATACC 58.477 52.381 12.09 6.54 39.32 2.73
4723 7953 5.669904 TCTCTCTTCTCCATCTCCTTCTCTA 59.330 44.000 0.00 0.00 0.00 2.43
4778 8371 2.527951 ATCCGTGTCTCCCTTGCAGC 62.528 60.000 0.00 0.00 0.00 5.25
4832 8425 4.842574 TCTGAATTCCAATCCAATCGACA 58.157 39.130 2.27 0.00 0.00 4.35
4856 8449 4.590647 ACATGTTCTTCTCTCCTTCTCACA 59.409 41.667 0.00 0.00 0.00 3.58
4944 8538 1.110442 CTCGACTCCTTGGAGCAGAT 58.890 55.000 15.93 0.00 0.00 2.90
4945 8539 0.967887 CCTCGACTCCTTGGAGCAGA 60.968 60.000 15.93 13.66 0.00 4.26
5020 8614 4.551410 CGACGTGTAAAACTGAAAACTCCC 60.551 45.833 0.00 0.00 0.00 4.30
5167 8765 1.518572 AGAAAGTGCGCGTATCCCG 60.519 57.895 8.43 0.00 40.40 5.14
5168 8766 0.459585 TCAGAAAGTGCGCGTATCCC 60.460 55.000 8.43 0.00 0.00 3.85
5252 8880 1.129437 GCGAGGATCAGTCAACTTTGC 59.871 52.381 0.00 0.00 33.17 3.68
5271 8899 4.751060 TGCATTCATCAATCCTCAAAAGC 58.249 39.130 0.00 0.00 0.00 3.51
5358 8986 7.453141 AGCTATACCTAGGATTTTCACCTTT 57.547 36.000 17.98 0.00 38.76 3.11
5359 8987 7.453141 AAGCTATACCTAGGATTTTCACCTT 57.547 36.000 17.98 4.52 38.76 3.50
5360 8988 7.453141 AAAGCTATACCTAGGATTTTCACCT 57.547 36.000 17.98 0.00 41.05 4.00
5408 9073 6.578919 GCAAAAAGAACAGCAGTAGACATAAC 59.421 38.462 0.00 0.00 0.00 1.89
5421 9086 7.509141 AATTAAAATGGGGCAAAAAGAACAG 57.491 32.000 0.00 0.00 0.00 3.16
5516 9181 1.742761 ACACATGACCATGCAGCTAC 58.257 50.000 9.70 0.00 42.39 3.58
5595 9266 0.244721 GCTCAAAGCGGGCTTTTGAT 59.755 50.000 15.51 0.00 42.93 2.57
5709 9380 0.252467 AGTCCCACTGCCTTCTAGCT 60.252 55.000 0.00 0.00 0.00 3.32
5828 9505 5.930837 ACAGTCCAATCAACAAAAGGAAA 57.069 34.783 0.00 0.00 0.00 3.13
5839 9516 5.808366 AGTCTAAGTGAACAGTCCAATCA 57.192 39.130 0.00 0.00 0.00 2.57
5975 9654 0.768221 AGTCAGTCAGGCCTTTCCCA 60.768 55.000 0.00 0.00 34.51 4.37
6032 9711 2.432510 GTCCAGTGTATCCCCAGAAGAG 59.567 54.545 0.00 0.00 0.00 2.85
6055 9734 6.817765 TGTGAAACCAGATTTATTCCTCAC 57.182 37.500 0.00 0.00 34.36 3.51
6141 9821 4.676924 GCTTTCAACAAGTTCAGCATACAC 59.323 41.667 0.00 0.00 0.00 2.90
6233 9914 4.866508 AGAGTTCAGTGACGAATGGTAA 57.133 40.909 0.00 0.00 0.00 2.85
6234 9915 4.038763 ACAAGAGTTCAGTGACGAATGGTA 59.961 41.667 0.00 0.00 0.00 3.25
6409 10091 9.010029 GGTACTGAATATGTTTTTCTTTCTGGA 57.990 33.333 0.00 0.00 0.00 3.86
6411 10093 8.717821 TCGGTACTGAATATGTTTTTCTTTCTG 58.282 33.333 0.63 0.00 0.00 3.02
6500 10183 2.281139 TTGACATTGCCGCCGACA 60.281 55.556 0.00 0.00 0.00 4.35
6634 10321 2.128771 ACAGCTTCACCACAAACACT 57.871 45.000 0.00 0.00 0.00 3.55
6974 13985 4.414956 AGGGCCAGGGTCCGATGA 62.415 66.667 6.18 0.00 46.16 2.92
7164 14175 6.096141 TGAGAAGCCAACAGTTGTTCATTTTA 59.904 34.615 12.42 0.00 35.83 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.