Multiple sequence alignment - TraesCS7D01G315700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G315700 chr7D 100.000 4203 0 0 1 4203 401784511 401780309 0.000000e+00 7762.0
1 TraesCS7D01G315700 chr7D 87.552 241 29 1 3545 3785 493118809 493119048 1.150000e-70 278.0
2 TraesCS7D01G315700 chr7D 95.349 43 2 0 3502 3544 443425684 443425642 7.540000e-08 69.4
3 TraesCS7D01G315700 chr7B 88.591 1490 92 30 1816 3265 411413759 411412308 0.000000e+00 1738.0
4 TraesCS7D01G315700 chr7B 93.539 681 24 14 656 1327 411415987 411415318 0.000000e+00 996.0
5 TraesCS7D01G315700 chr7B 100.000 33 0 0 3269 3301 411412057 411412025 1.260000e-05 62.1
6 TraesCS7D01G315700 chr7A 89.970 1326 86 21 1953 3252 459517560 459516256 0.000000e+00 1668.0
7 TraesCS7D01G315700 chr7A 87.084 1022 69 40 607 1590 459519074 459518078 0.000000e+00 1098.0
8 TraesCS7D01G315700 chr7A 93.816 663 40 1 3541 4203 151373821 151373160 0.000000e+00 996.0
9 TraesCS7D01G315700 chr5A 95.921 662 27 0 3542 4203 659320424 659321085 0.000000e+00 1074.0
10 TraesCS7D01G315700 chr5A 94.562 662 27 1 3542 4203 709216772 709216120 0.000000e+00 1014.0
11 TraesCS7D01G315700 chr6A 94.992 659 32 1 3545 4203 73912075 73912732 0.000000e+00 1033.0
12 TraesCS7D01G315700 chr6A 95.238 42 2 0 3503 3544 181020855 181020896 2.710000e-07 67.6
13 TraesCS7D01G315700 chr2A 94.145 649 38 0 3555 4203 235678445 235679093 0.000000e+00 989.0
14 TraesCS7D01G315700 chr2A 86.319 614 66 15 14 611 661702732 661702121 0.000000e+00 652.0
15 TraesCS7D01G315700 chr5D 88.455 589 53 10 3 577 283103205 283103792 0.000000e+00 697.0
16 TraesCS7D01G315700 chr1D 90.805 522 40 6 3 517 7698388 7697868 0.000000e+00 691.0
17 TraesCS7D01G315700 chr1D 88.783 526 50 7 3 521 3805824 3806347 1.650000e-178 636.0
18 TraesCS7D01G315700 chr3B 89.293 523 50 5 3 521 809031372 809030852 0.000000e+00 651.0
19 TraesCS7D01G315700 chr3B 92.718 206 15 0 3542 3747 804005932 804005727 8.830000e-77 298.0
20 TraesCS7D01G315700 chr4A 89.300 514 44 7 3 510 666370085 666369577 5.930000e-178 634.0
21 TraesCS7D01G315700 chr4A 82.927 656 106 2 3546 4201 706485995 706485346 1.680000e-163 586.0
22 TraesCS7D01G315700 chr4A 93.182 44 3 0 3501 3544 144365128 144365085 9.750000e-07 65.8
23 TraesCS7D01G315700 chr3A 88.740 524 49 8 3 519 94381738 94382258 2.130000e-177 632.0
24 TraesCS7D01G315700 chr3A 97.500 40 1 0 3507 3546 716946296 716946257 7.540000e-08 69.4
25 TraesCS7D01G315700 chr5B 88.571 525 48 9 3 521 531573593 531573075 9.920000e-176 627.0
26 TraesCS7D01G315700 chr5B 88.280 529 53 7 1 521 526192202 526191675 3.570000e-175 625.0
27 TraesCS7D01G315700 chr6B 97.619 42 0 1 3504 3544 68797186 68797145 2.100000e-08 71.3
28 TraesCS7D01G315700 chr6B 97.368 38 1 0 3507 3544 706302725 706302688 9.750000e-07 65.8
29 TraesCS7D01G315700 chr4B 95.238 42 2 0 3503 3544 649232090 649232131 2.710000e-07 67.6
30 TraesCS7D01G315700 chr2B 93.182 44 3 0 3501 3544 382599103 382599060 9.750000e-07 65.8
31 TraesCS7D01G315700 chr3D 82.857 70 7 2 3471 3540 574432340 574432276 1.630000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G315700 chr7D 401780309 401784511 4202 True 7762.000000 7762 100.000000 1 4203 1 chr7D.!!$R1 4202
1 TraesCS7D01G315700 chr7B 411412025 411415987 3962 True 932.033333 1738 94.043333 656 3301 3 chr7B.!!$R1 2645
2 TraesCS7D01G315700 chr7A 459516256 459519074 2818 True 1383.000000 1668 88.527000 607 3252 2 chr7A.!!$R2 2645
3 TraesCS7D01G315700 chr7A 151373160 151373821 661 True 996.000000 996 93.816000 3541 4203 1 chr7A.!!$R1 662
4 TraesCS7D01G315700 chr5A 659320424 659321085 661 False 1074.000000 1074 95.921000 3542 4203 1 chr5A.!!$F1 661
5 TraesCS7D01G315700 chr5A 709216120 709216772 652 True 1014.000000 1014 94.562000 3542 4203 1 chr5A.!!$R1 661
6 TraesCS7D01G315700 chr6A 73912075 73912732 657 False 1033.000000 1033 94.992000 3545 4203 1 chr6A.!!$F1 658
7 TraesCS7D01G315700 chr2A 235678445 235679093 648 False 989.000000 989 94.145000 3555 4203 1 chr2A.!!$F1 648
8 TraesCS7D01G315700 chr2A 661702121 661702732 611 True 652.000000 652 86.319000 14 611 1 chr2A.!!$R1 597
9 TraesCS7D01G315700 chr5D 283103205 283103792 587 False 697.000000 697 88.455000 3 577 1 chr5D.!!$F1 574
10 TraesCS7D01G315700 chr1D 7697868 7698388 520 True 691.000000 691 90.805000 3 517 1 chr1D.!!$R1 514
11 TraesCS7D01G315700 chr1D 3805824 3806347 523 False 636.000000 636 88.783000 3 521 1 chr1D.!!$F1 518
12 TraesCS7D01G315700 chr3B 809030852 809031372 520 True 651.000000 651 89.293000 3 521 1 chr3B.!!$R2 518
13 TraesCS7D01G315700 chr4A 666369577 666370085 508 True 634.000000 634 89.300000 3 510 1 chr4A.!!$R2 507
14 TraesCS7D01G315700 chr4A 706485346 706485995 649 True 586.000000 586 82.927000 3546 4201 1 chr4A.!!$R3 655
15 TraesCS7D01G315700 chr3A 94381738 94382258 520 False 632.000000 632 88.740000 3 519 1 chr3A.!!$F1 516
16 TraesCS7D01G315700 chr5B 531573075 531573593 518 True 627.000000 627 88.571000 3 521 1 chr5B.!!$R2 518
17 TraesCS7D01G315700 chr5B 526191675 526192202 527 True 625.000000 625 88.280000 1 521 1 chr5B.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1013 0.032615 ATCCTTCCGCTCCTCTCACT 60.033 55.0 0.00 0.00 0.00 3.41 F
1346 1395 0.029035 CTACGGACGTCTTGATCCCG 59.971 60.0 16.46 11.79 45.09 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2298 3672 0.834687 AGGTAGTCGTTGCTCCCCAA 60.835 55.0 0.0 0.0 0.0 4.12 R
3310 4964 0.531753 AACAAAATTGGTGGCGGTGC 60.532 50.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.046591 CCAACTTACTATTGTGAGAGGACCA 60.047 44.000 6.11 0.00 33.80 4.02
446 460 7.084486 GGTTCTATTTGAGTGTCCAAATGTTC 58.916 38.462 10.94 1.80 43.99 3.18
578 606 5.106830 ACTGTAAAAGTTATTTTAGCGCGCT 60.107 36.000 38.01 38.01 40.62 5.92
583 611 7.579794 AAAAGTTATTTTAGCGCGCTGCGTA 62.580 40.000 41.85 24.83 44.30 4.42
584 612 8.942204 AAAAGTTATTTTAGCGCGCTGCGTAA 62.942 38.462 41.85 28.36 44.30 3.18
698 732 4.998671 TCTCCTCATTACTTCTGCTGAG 57.001 45.455 0.00 0.00 35.88 3.35
699 733 4.604156 TCTCCTCATTACTTCTGCTGAGA 58.396 43.478 0.00 0.00 37.85 3.27
906 940 0.748450 TGTATTTACTCCTCCCGCCG 59.252 55.000 0.00 0.00 0.00 6.46
908 942 0.106066 TATTTACTCCTCCCGCCGGA 60.106 55.000 5.05 0.00 36.45 5.14
952 994 1.136828 AGCTCCCGCCATATTTACCA 58.863 50.000 0.00 0.00 36.60 3.25
955 997 2.711542 CTCCCGCCATATTTACCATCC 58.288 52.381 0.00 0.00 0.00 3.51
957 999 2.714250 TCCCGCCATATTTACCATCCTT 59.286 45.455 0.00 0.00 0.00 3.36
959 1001 3.081804 CCGCCATATTTACCATCCTTCC 58.918 50.000 0.00 0.00 0.00 3.46
966 1008 1.120530 TTACCATCCTTCCGCTCCTC 58.879 55.000 0.00 0.00 0.00 3.71
967 1009 0.261991 TACCATCCTTCCGCTCCTCT 59.738 55.000 0.00 0.00 0.00 3.69
968 1010 1.045911 ACCATCCTTCCGCTCCTCTC 61.046 60.000 0.00 0.00 0.00 3.20
969 1011 1.045350 CCATCCTTCCGCTCCTCTCA 61.045 60.000 0.00 0.00 0.00 3.27
970 1012 0.103937 CATCCTTCCGCTCCTCTCAC 59.896 60.000 0.00 0.00 0.00 3.51
971 1013 0.032615 ATCCTTCCGCTCCTCTCACT 60.033 55.000 0.00 0.00 0.00 3.41
972 1014 0.681564 TCCTTCCGCTCCTCTCACTC 60.682 60.000 0.00 0.00 0.00 3.51
973 1015 0.682855 CCTTCCGCTCCTCTCACTCT 60.683 60.000 0.00 0.00 0.00 3.24
974 1016 0.738389 CTTCCGCTCCTCTCACTCTC 59.262 60.000 0.00 0.00 0.00 3.20
1026 1068 0.536260 CTGGCTGAGCTGAGCTTAGT 59.464 55.000 24.64 0.00 42.97 2.24
1340 1389 3.593247 CGTACCTACGGACGTCTTG 57.407 57.895 16.46 11.00 45.30 3.02
1342 1391 1.667724 CGTACCTACGGACGTCTTGAT 59.332 52.381 16.46 1.16 45.30 2.57
1343 1392 2.286067 CGTACCTACGGACGTCTTGATC 60.286 54.545 16.46 0.00 45.30 2.92
1344 1393 1.101331 ACCTACGGACGTCTTGATCC 58.899 55.000 16.46 0.00 0.00 3.36
1345 1394 0.384669 CCTACGGACGTCTTGATCCC 59.615 60.000 16.46 0.00 0.00 3.85
1346 1395 0.029035 CTACGGACGTCTTGATCCCG 59.971 60.000 16.46 11.79 45.09 5.14
1347 1396 0.392863 TACGGACGTCTTGATCCCGA 60.393 55.000 16.46 0.00 42.49 5.14
1348 1397 1.226603 CGGACGTCTTGATCCCGAC 60.227 63.158 16.46 0.61 42.49 4.79
1362 1411 2.733218 CGACGAGTTCGCCAGCAA 60.733 61.111 0.73 0.00 41.87 3.91
1364 1413 1.493311 GACGAGTTCGCCAGCAAAG 59.507 57.895 0.73 0.00 44.43 2.77
1367 1416 1.499502 GAGTTCGCCAGCAAAGAGC 59.500 57.895 0.00 0.00 46.19 4.09
1387 1436 4.164822 GCAAAATGCTTTACTCTGCTGA 57.835 40.909 0.00 0.00 40.96 4.26
1388 1437 4.741342 GCAAAATGCTTTACTCTGCTGAT 58.259 39.130 0.00 0.00 40.96 2.90
1390 1439 5.287992 GCAAAATGCTTTACTCTGCTGATTC 59.712 40.000 0.00 0.00 40.96 2.52
1391 1440 4.871993 AATGCTTTACTCTGCTGATTCG 57.128 40.909 0.00 0.00 0.00 3.34
1393 1442 3.515630 TGCTTTACTCTGCTGATTCGAG 58.484 45.455 0.00 0.00 0.00 4.04
1394 1443 3.056536 TGCTTTACTCTGCTGATTCGAGT 60.057 43.478 0.00 0.00 40.74 4.18
1397 1446 5.751028 GCTTTACTCTGCTGATTCGAGTATT 59.249 40.000 0.00 0.00 39.29 1.89
1398 1447 6.918569 GCTTTACTCTGCTGATTCGAGTATTA 59.081 38.462 0.00 0.00 39.29 0.98
1399 1448 7.596995 GCTTTACTCTGCTGATTCGAGTATTAT 59.403 37.037 0.00 0.00 39.29 1.28
1401 1450 5.226396 ACTCTGCTGATTCGAGTATTATGC 58.774 41.667 0.00 0.00 36.33 3.14
1403 1452 5.600696 TCTGCTGATTCGAGTATTATGCAA 58.399 37.500 0.00 0.00 0.00 4.08
1404 1453 6.226052 TCTGCTGATTCGAGTATTATGCAAT 58.774 36.000 0.00 0.00 0.00 3.56
1405 1454 6.707608 TCTGCTGATTCGAGTATTATGCAATT 59.292 34.615 0.00 0.00 0.00 2.32
1406 1455 6.661669 TGCTGATTCGAGTATTATGCAATTG 58.338 36.000 0.00 0.00 0.00 2.32
1407 1456 6.482973 TGCTGATTCGAGTATTATGCAATTGA 59.517 34.615 10.34 0.00 0.00 2.57
1408 1457 7.012232 TGCTGATTCGAGTATTATGCAATTGAA 59.988 33.333 10.34 0.00 0.00 2.69
1409 1458 7.322222 GCTGATTCGAGTATTATGCAATTGAAC 59.678 37.037 10.34 0.00 0.00 3.18
1410 1459 7.639039 TGATTCGAGTATTATGCAATTGAACC 58.361 34.615 10.34 0.00 0.00 3.62
1411 1460 6.371809 TTCGAGTATTATGCAATTGAACCC 57.628 37.500 10.34 0.00 0.00 4.11
1416 1476 7.338800 AGTATTATGCAATTGAACCCTGAAG 57.661 36.000 10.34 0.00 0.00 3.02
1426 1486 2.439507 TGAACCCTGAAGCTTCTGAACT 59.560 45.455 28.94 15.15 0.00 3.01
1430 1490 2.064762 CCTGAAGCTTCTGAACTGTCG 58.935 52.381 28.94 10.93 0.00 4.35
1433 1493 2.062519 GAAGCTTCTGAACTGTCGACC 58.937 52.381 19.44 0.00 0.00 4.79
1435 1495 0.033504 GCTTCTGAACTGTCGACCCA 59.966 55.000 14.12 5.08 0.00 4.51
1442 1502 0.889306 AACTGTCGACCCAGCTAGAC 59.111 55.000 14.12 0.00 35.83 2.59
1443 1503 0.251209 ACTGTCGACCCAGCTAGACA 60.251 55.000 14.12 0.00 40.77 3.41
1445 1505 0.817654 TGTCGACCCAGCTAGACATG 59.182 55.000 14.12 0.00 38.52 3.21
1446 1506 0.818296 GTCGACCCAGCTAGACATGT 59.182 55.000 3.51 0.00 34.09 3.21
1447 1507 1.204941 GTCGACCCAGCTAGACATGTT 59.795 52.381 3.51 0.00 34.09 2.71
1448 1508 1.476891 TCGACCCAGCTAGACATGTTC 59.523 52.381 0.00 0.00 0.00 3.18
1450 1510 2.159043 CGACCCAGCTAGACATGTTCAT 60.159 50.000 0.00 0.00 0.00 2.57
1453 1513 4.666512 ACCCAGCTAGACATGTTCATTTT 58.333 39.130 0.00 0.00 0.00 1.82
1455 1515 6.426587 ACCCAGCTAGACATGTTCATTTTAT 58.573 36.000 0.00 0.00 0.00 1.40
1456 1516 6.543831 ACCCAGCTAGACATGTTCATTTTATC 59.456 38.462 0.00 0.00 0.00 1.75
1457 1517 6.016777 CCCAGCTAGACATGTTCATTTTATCC 60.017 42.308 0.00 0.00 0.00 2.59
1458 1518 6.293081 CCAGCTAGACATGTTCATTTTATCCG 60.293 42.308 0.00 0.00 0.00 4.18
1459 1519 5.760253 AGCTAGACATGTTCATTTTATCCGG 59.240 40.000 0.00 0.00 0.00 5.14
1480 1540 4.155826 CGGGCTTCAGACATGTTCATTTTA 59.844 41.667 0.00 0.00 0.00 1.52
1487 1547 6.389091 TCAGACATGTTCATTTTATTGGTGC 58.611 36.000 0.00 0.00 0.00 5.01
1494 1554 8.533965 CATGTTCATTTTATTGGTGCTTTATCG 58.466 33.333 0.00 0.00 0.00 2.92
1495 1555 6.529829 TGTTCATTTTATTGGTGCTTTATCGC 59.470 34.615 0.00 0.00 0.00 4.58
1498 1558 7.414436 TCATTTTATTGGTGCTTTATCGCTAC 58.586 34.615 0.00 0.00 0.00 3.58
1502 1562 3.603158 TGGTGCTTTATCGCTACTTCA 57.397 42.857 0.00 0.00 0.00 3.02
1508 1568 4.625742 TGCTTTATCGCTACTTCAAGTGAC 59.374 41.667 0.00 0.00 38.74 3.67
1516 1576 4.561105 GCTACTTCAAGTGACAAGCTAGT 58.439 43.478 0.00 0.00 0.00 2.57
1521 1581 5.648092 ACTTCAAGTGACAAGCTAGTGTTTT 59.352 36.000 0.00 0.00 0.00 2.43
1523 1583 6.119144 TCAAGTGACAAGCTAGTGTTTTTC 57.881 37.500 0.00 0.00 0.00 2.29
1524 1584 5.065988 TCAAGTGACAAGCTAGTGTTTTTCC 59.934 40.000 0.00 0.00 0.00 3.13
1525 1585 4.781934 AGTGACAAGCTAGTGTTTTTCCT 58.218 39.130 0.00 0.00 0.00 3.36
1528 1588 4.947388 TGACAAGCTAGTGTTTTTCCTTGT 59.053 37.500 7.55 7.55 43.72 3.16
1529 1589 5.163663 TGACAAGCTAGTGTTTTTCCTTGTG 60.164 40.000 11.32 0.00 41.85 3.33
1530 1590 3.990318 AGCTAGTGTTTTTCCTTGTGC 57.010 42.857 0.00 0.00 0.00 4.57
1531 1591 2.290641 AGCTAGTGTTTTTCCTTGTGCG 59.709 45.455 0.00 0.00 0.00 5.34
1532 1592 2.289547 GCTAGTGTTTTTCCTTGTGCGA 59.710 45.455 0.00 0.00 0.00 5.10
1533 1593 3.058224 GCTAGTGTTTTTCCTTGTGCGAT 60.058 43.478 0.00 0.00 0.00 4.58
1534 1594 3.626028 AGTGTTTTTCCTTGTGCGATC 57.374 42.857 0.00 0.00 0.00 3.69
1535 1595 2.948979 AGTGTTTTTCCTTGTGCGATCA 59.051 40.909 0.00 0.00 0.00 2.92
1536 1596 3.569701 AGTGTTTTTCCTTGTGCGATCAT 59.430 39.130 0.00 0.00 0.00 2.45
1537 1597 3.670055 GTGTTTTTCCTTGTGCGATCATG 59.330 43.478 0.00 0.00 0.00 3.07
1546 1608 0.179156 GTGCGATCATGTTTGCCAGG 60.179 55.000 12.51 0.00 0.00 4.45
1551 1613 2.684374 CGATCATGTTTGCCAGGATTCA 59.316 45.455 0.00 0.00 44.23 2.57
1554 1616 3.229293 TCATGTTTGCCAGGATTCAACA 58.771 40.909 0.00 0.00 0.00 3.33
1562 1624 3.321682 TGCCAGGATTCAACAAAAAGAGG 59.678 43.478 0.00 0.00 0.00 3.69
1564 1626 3.259123 CCAGGATTCAACAAAAAGAGGGG 59.741 47.826 0.00 0.00 0.00 4.79
1571 1633 4.450053 TCAACAAAAAGAGGGGCAAAATG 58.550 39.130 0.00 0.00 0.00 2.32
1590 1655 7.095523 GCAAAATGCAGTGTAGAATTTGTGAAT 60.096 33.333 14.06 0.00 44.26 2.57
1591 1656 8.767085 CAAAATGCAGTGTAGAATTTGTGAATT 58.233 29.630 0.00 0.00 38.16 2.17
1604 1669 8.100863 GAATTTGTGAATTCGAATCACTGATG 57.899 34.615 26.41 0.00 45.81 3.07
1605 1670 6.558771 TTTGTGAATTCGAATCACTGATGT 57.441 33.333 26.41 7.94 45.81 3.06
1606 1671 7.665561 TTTGTGAATTCGAATCACTGATGTA 57.334 32.000 26.41 12.93 45.81 2.29
1607 1672 6.647212 TGTGAATTCGAATCACTGATGTAC 57.353 37.500 26.41 13.52 45.81 2.90
1608 1673 5.580691 TGTGAATTCGAATCACTGATGTACC 59.419 40.000 26.41 9.95 45.81 3.34
1609 1674 5.812642 GTGAATTCGAATCACTGATGTACCT 59.187 40.000 22.55 2.67 43.03 3.08
1610 1675 6.313905 GTGAATTCGAATCACTGATGTACCTT 59.686 38.462 22.55 2.99 43.03 3.50
1611 1676 6.535150 TGAATTCGAATCACTGATGTACCTTC 59.465 38.462 11.83 1.43 0.00 3.46
1612 1677 5.661056 TTCGAATCACTGATGTACCTTCT 57.339 39.130 0.00 0.00 0.00 2.85
1613 1678 6.769134 TTCGAATCACTGATGTACCTTCTA 57.231 37.500 0.00 0.00 0.00 2.10
1614 1679 6.961360 TCGAATCACTGATGTACCTTCTAT 57.039 37.500 0.00 0.00 0.00 1.98
1615 1680 7.348080 TCGAATCACTGATGTACCTTCTATT 57.652 36.000 0.00 0.00 0.00 1.73
1616 1681 7.782049 TCGAATCACTGATGTACCTTCTATTT 58.218 34.615 0.00 0.00 0.00 1.40
1617 1682 7.706607 TCGAATCACTGATGTACCTTCTATTTG 59.293 37.037 0.00 0.00 0.00 2.32
1618 1683 7.706607 CGAATCACTGATGTACCTTCTATTTGA 59.293 37.037 0.00 0.00 0.00 2.69
1619 1684 9.383519 GAATCACTGATGTACCTTCTATTTGAA 57.616 33.333 0.00 0.00 0.00 2.69
1620 1685 9.739276 AATCACTGATGTACCTTCTATTTGAAA 57.261 29.630 0.00 0.00 33.79 2.69
1621 1686 9.739276 ATCACTGATGTACCTTCTATTTGAAAA 57.261 29.630 0.00 0.00 33.79 2.29
1622 1687 9.567776 TCACTGATGTACCTTCTATTTGAAAAA 57.432 29.630 0.00 0.00 33.79 1.94
1672 1737 7.692460 ATGTTTGCATCAGTAATTTCTCTGA 57.308 32.000 9.10 9.10 43.38 3.27
1676 1750 6.187125 TGCATCAGTAATTTCTCTGAAAGC 57.813 37.500 17.73 17.73 42.67 3.51
1683 1757 6.849811 CAGTAATTTCTCTGAAAGCATATGCG 59.150 38.462 21.57 7.58 38.77 4.73
1699 1773 6.214399 GCATATGCGTAAGTTTCCTAGTACT 58.786 40.000 12.82 0.00 41.68 2.73
1700 1774 7.365741 GCATATGCGTAAGTTTCCTAGTACTA 58.634 38.462 12.82 1.89 41.68 1.82
1701 1775 7.537991 GCATATGCGTAAGTTTCCTAGTACTAG 59.462 40.741 21.11 21.11 41.68 2.57
1703 1777 9.784531 ATATGCGTAAGTTTCCTAGTACTAGTA 57.215 33.333 24.84 9.99 41.68 1.82
1704 1778 7.921786 TGCGTAAGTTTCCTAGTACTAGTAA 57.078 36.000 24.84 15.29 41.68 2.24
1705 1779 8.335532 TGCGTAAGTTTCCTAGTACTAGTAAA 57.664 34.615 24.84 19.77 41.68 2.01
1706 1780 8.454106 TGCGTAAGTTTCCTAGTACTAGTAAAG 58.546 37.037 24.84 12.47 41.68 1.85
1707 1781 8.669243 GCGTAAGTTTCCTAGTACTAGTAAAGA 58.331 37.037 24.84 14.03 41.68 2.52
1715 1789 9.539825 TTCCTAGTACTAGTAAAGATGTACTCG 57.460 37.037 24.84 7.68 42.83 4.18
1716 1790 8.700051 TCCTAGTACTAGTAAAGATGTACTCGT 58.300 37.037 24.84 0.00 42.83 4.18
1717 1791 9.973450 CCTAGTACTAGTAAAGATGTACTCGTA 57.027 37.037 24.84 0.00 42.83 3.43
1733 1902 3.864583 ACTCGTACTACTAGAGCAGAACG 59.135 47.826 0.00 0.00 35.56 3.95
1744 1913 1.325943 GAGCAGAACGCAATCTAGTGC 59.674 52.381 0.00 0.00 46.13 4.40
1786 1955 0.950555 GATTCAGCACAGCACGGACA 60.951 55.000 0.00 0.00 0.00 4.02
1788 1957 2.994387 TTCAGCACAGCACGGACAGG 62.994 60.000 0.00 0.00 0.00 4.00
1796 3061 2.574955 GCACGGACAGGACAGGAGT 61.575 63.158 0.00 0.00 0.00 3.85
1799 3064 1.674651 CGGACAGGACAGGAGTCGA 60.675 63.158 0.00 0.00 45.92 4.20
1803 3068 2.611518 GACAGGACAGGAGTCGAATTG 58.388 52.381 0.00 0.00 45.92 2.32
1824 3094 3.758554 TGACTCATCACAGTGAGATCGAA 59.241 43.478 9.64 0.00 46.77 3.71
1834 3104 3.061831 CAGTGAGATCGAACAGTTGCATC 59.938 47.826 0.00 0.00 0.00 3.91
1858 3128 1.959282 GGAACAGAATGGCCATCATCC 59.041 52.381 21.08 17.37 43.62 3.51
1860 3130 0.820891 ACAGAATGGCCATCATCCGC 60.821 55.000 21.08 4.70 43.62 5.54
1868 3140 2.405805 CCATCATCCGCCGCAACAA 61.406 57.895 0.00 0.00 0.00 2.83
1873 3145 1.377202 ATCCGCCGCAACAACAGAT 60.377 52.632 0.00 0.00 0.00 2.90
1886 3160 5.981174 CAACAACAGATTGCATTTTCCTTG 58.019 37.500 0.00 0.00 39.66 3.61
1887 3161 4.060205 ACAACAGATTGCATTTTCCTTGC 58.940 39.130 0.00 0.00 39.66 4.01
1901 3175 1.272490 TCCTTGCAGTTCTGTACTCCG 59.728 52.381 0.00 0.00 33.85 4.63
1907 3181 4.385825 TGCAGTTCTGTACTCCGAAAATT 58.614 39.130 0.00 0.00 33.85 1.82
1911 3185 6.293462 GCAGTTCTGTACTCCGAAAATTCTTT 60.293 38.462 0.00 0.00 33.85 2.52
1922 3196 6.222389 TCCGAAAATTCTTTTGTGCATGATT 58.778 32.000 0.00 0.00 31.94 2.57
1923 3197 6.145858 TCCGAAAATTCTTTTGTGCATGATTG 59.854 34.615 0.00 0.00 31.94 2.67
1938 3212 4.270084 GCATGATTGACCAAATGCTGATTG 59.730 41.667 0.00 0.00 41.71 2.67
1941 3215 3.306917 TTGACCAAATGCTGATTGCTG 57.693 42.857 0.00 0.00 43.37 4.41
1942 3216 2.516906 TGACCAAATGCTGATTGCTGA 58.483 42.857 0.00 0.00 43.37 4.26
1943 3217 2.490509 TGACCAAATGCTGATTGCTGAG 59.509 45.455 0.00 0.00 43.37 3.35
1944 3218 2.490903 GACCAAATGCTGATTGCTGAGT 59.509 45.455 0.00 0.00 43.37 3.41
1945 3219 3.689347 ACCAAATGCTGATTGCTGAGTA 58.311 40.909 0.00 0.00 43.37 2.59
1946 3220 3.441572 ACCAAATGCTGATTGCTGAGTAC 59.558 43.478 0.00 0.00 43.37 2.73
1947 3221 3.693085 CCAAATGCTGATTGCTGAGTACT 59.307 43.478 0.00 0.00 43.37 2.73
1949 3223 2.391616 TGCTGATTGCTGAGTACTGG 57.608 50.000 0.00 0.00 43.37 4.00
1951 3225 2.005451 GCTGATTGCTGAGTACTGGTG 58.995 52.381 0.00 0.00 38.95 4.17
1959 3311 5.940192 TGCTGAGTACTGGTGTTATTTTG 57.060 39.130 0.00 0.00 0.00 2.44
1960 3312 5.373222 TGCTGAGTACTGGTGTTATTTTGT 58.627 37.500 0.00 0.00 0.00 2.83
1964 3316 5.935789 TGAGTACTGGTGTTATTTTGTAGCC 59.064 40.000 0.00 0.00 0.00 3.93
2001 3353 1.627297 CCTGGTTCCAGCCTACTCCC 61.627 65.000 12.88 0.00 33.07 4.30
2005 3357 0.910088 GTTCCAGCCTACTCCCAGGT 60.910 60.000 0.00 0.00 38.05 4.00
2075 3427 2.278661 GCCGGAATCCTCGACGAC 60.279 66.667 5.05 0.00 0.00 4.34
2081 3433 3.701604 AATCCTCGACGACAGCGGC 62.702 63.158 0.00 0.00 43.80 6.53
2094 3446 1.445582 AGCGGCGGAAACTTCGTAG 60.446 57.895 9.78 0.00 0.00 3.51
2104 3456 4.026804 CGGAAACTTCGTAGGAATTCATCG 60.027 45.833 7.93 8.56 0.00 3.84
2106 3458 5.005490 GGAAACTTCGTAGGAATTCATCGAC 59.995 44.000 7.93 0.00 0.00 4.20
2107 3459 4.043037 ACTTCGTAGGAATTCATCGACC 57.957 45.455 7.93 0.00 0.00 4.79
2108 3460 2.768833 TCGTAGGAATTCATCGACCG 57.231 50.000 7.93 1.83 0.00 4.79
2109 3461 1.335810 TCGTAGGAATTCATCGACCGG 59.664 52.381 7.93 0.00 0.00 5.28
2116 3475 1.953559 ATTCATCGACCGGTGATTGG 58.046 50.000 14.63 5.01 0.00 3.16
2125 3484 3.741344 CGACCGGTGATTGGATCTAATTC 59.259 47.826 14.63 3.13 0.00 2.17
2127 3486 5.368989 GACCGGTGATTGGATCTAATTCTT 58.631 41.667 14.63 0.00 0.00 2.52
2153 3512 4.527509 ACTTCTGACGATGATCAACTGT 57.472 40.909 0.00 0.00 0.00 3.55
2154 3513 4.887748 ACTTCTGACGATGATCAACTGTT 58.112 39.130 0.00 0.00 0.00 3.16
2176 3535 3.253230 GGTTGTAATCAATGCAGGTTGC 58.747 45.455 0.00 0.00 45.29 4.17
2240 3599 4.933064 GGCCAGATCGCCGTCTCG 62.933 72.222 0.00 0.00 39.64 4.04
2298 3672 2.211410 TCCATCGTGTTCGTGGGGT 61.211 57.895 0.00 0.00 38.12 4.95
2390 3764 3.744719 TTCGCCGACCTCCTCGTG 61.745 66.667 0.00 0.00 41.18 4.35
2400 3774 2.230508 GACCTCCTCGTGACACAATACA 59.769 50.000 6.37 0.00 0.00 2.29
2435 3809 5.885020 CCGTAAGATATCGGTCAAAAGTC 57.115 43.478 0.00 0.00 41.58 3.01
2436 3810 5.345702 CCGTAAGATATCGGTCAAAAGTCA 58.654 41.667 0.00 0.00 41.58 3.41
2437 3811 5.808540 CCGTAAGATATCGGTCAAAAGTCAA 59.191 40.000 0.00 0.00 41.58 3.18
2438 3812 6.311935 CCGTAAGATATCGGTCAAAAGTCAAA 59.688 38.462 0.00 0.00 41.58 2.69
2439 3813 7.148540 CCGTAAGATATCGGTCAAAAGTCAAAA 60.149 37.037 0.00 0.00 41.58 2.44
2440 3814 7.686938 CGTAAGATATCGGTCAAAAGTCAAAAC 59.313 37.037 0.00 0.00 43.02 2.43
2441 3815 6.496338 AGATATCGGTCAAAAGTCAAAACC 57.504 37.500 0.00 0.00 0.00 3.27
2442 3816 5.414765 AGATATCGGTCAAAAGTCAAAACCC 59.585 40.000 0.00 0.00 0.00 4.11
2443 3817 3.007473 TCGGTCAAAAGTCAAAACCCT 57.993 42.857 0.00 0.00 0.00 4.34
2444 3818 3.358118 TCGGTCAAAAGTCAAAACCCTT 58.642 40.909 0.00 0.00 0.00 3.95
2445 3819 4.525024 TCGGTCAAAAGTCAAAACCCTTA 58.475 39.130 0.00 0.00 0.00 2.69
2446 3820 4.577283 TCGGTCAAAAGTCAAAACCCTTAG 59.423 41.667 0.00 0.00 0.00 2.18
2456 3830 2.236893 CAAAACCCTTAGCCCTACCGTA 59.763 50.000 0.00 0.00 0.00 4.02
2479 3853 2.682856 TGTGTGTTCTTGCTTGGAAGTC 59.317 45.455 2.06 0.00 0.00 3.01
2480 3854 2.033424 GTGTGTTCTTGCTTGGAAGTCC 59.967 50.000 2.06 0.00 0.00 3.85
2764 4162 2.161030 GCCTCCTACGGTAAGATCGAT 58.839 52.381 0.00 0.00 0.00 3.59
2801 4206 5.106396 GCAGAACTGATAATGTGCTTCTTGT 60.106 40.000 5.97 0.00 33.43 3.16
2802 4207 6.092670 GCAGAACTGATAATGTGCTTCTTGTA 59.907 38.462 5.97 0.00 33.43 2.41
2803 4208 7.459486 CAGAACTGATAATGTGCTTCTTGTAC 58.541 38.462 0.00 0.00 0.00 2.90
3113 4518 5.776173 ATCTGAATTACCAGGTCGACTAG 57.224 43.478 16.46 8.13 34.99 2.57
3114 4519 3.380637 TCTGAATTACCAGGTCGACTAGC 59.619 47.826 16.46 0.00 34.99 3.42
3115 4520 3.362706 TGAATTACCAGGTCGACTAGCT 58.637 45.455 16.46 0.67 35.94 3.32
3116 4521 4.529897 TGAATTACCAGGTCGACTAGCTA 58.470 43.478 16.46 0.00 33.59 3.32
3117 4522 4.579340 TGAATTACCAGGTCGACTAGCTAG 59.421 45.833 19.44 19.44 33.59 3.42
3118 4523 1.964552 TACCAGGTCGACTAGCTAGC 58.035 55.000 20.91 6.62 33.59 3.42
3119 4524 0.256464 ACCAGGTCGACTAGCTAGCT 59.744 55.000 23.12 23.12 33.59 3.32
3120 4525 1.489649 ACCAGGTCGACTAGCTAGCTA 59.510 52.381 22.85 22.85 33.59 3.32
3122 4527 2.224329 CCAGGTCGACTAGCTAGCTAGA 60.224 54.545 43.93 27.23 46.56 2.43
3123 4528 3.558321 CCAGGTCGACTAGCTAGCTAGAT 60.558 52.174 43.93 31.67 46.56 1.98
3124 4529 3.682858 CAGGTCGACTAGCTAGCTAGATC 59.317 52.174 43.93 34.54 46.56 2.75
3198 4604 6.036300 CGCATGCAAAATTAAACTGAATGGAT 59.964 34.615 19.57 0.00 0.00 3.41
3265 4672 6.092259 GTGAGTGGAATTTATGCTTTCTACGT 59.908 38.462 0.00 0.00 38.09 3.57
3266 4673 7.277098 GTGAGTGGAATTTATGCTTTCTACGTA 59.723 37.037 0.00 0.00 38.09 3.57
3267 4674 7.277098 TGAGTGGAATTTATGCTTTCTACGTAC 59.723 37.037 0.00 0.00 38.09 3.67
3301 4955 4.980573 TGGGAAGGAGAATTTTCTTTCGA 58.019 39.130 12.73 2.28 37.73 3.71
3302 4956 5.381757 TGGGAAGGAGAATTTTCTTTCGAA 58.618 37.500 12.73 0.00 37.73 3.71
3303 4957 5.240844 TGGGAAGGAGAATTTTCTTTCGAAC 59.759 40.000 12.73 7.79 37.73 3.95
3304 4958 5.240844 GGGAAGGAGAATTTTCTTTCGAACA 59.759 40.000 12.73 0.00 37.73 3.18
3305 4959 6.143496 GGAAGGAGAATTTTCTTTCGAACAC 58.857 40.000 12.73 0.00 37.73 3.32
3306 4960 6.238648 GGAAGGAGAATTTTCTTTCGAACACA 60.239 38.462 12.73 0.00 37.73 3.72
3307 4961 6.305693 AGGAGAATTTTCTTTCGAACACAG 57.694 37.500 0.00 0.00 37.73 3.66
3308 4962 5.239525 AGGAGAATTTTCTTTCGAACACAGG 59.760 40.000 0.00 0.00 37.73 4.00
3309 4963 5.438761 AGAATTTTCTTTCGAACACAGGG 57.561 39.130 0.00 0.00 32.55 4.45
3310 4964 4.278419 AGAATTTTCTTTCGAACACAGGGG 59.722 41.667 0.00 0.00 32.55 4.79
3311 4965 1.314730 TTTCTTTCGAACACAGGGGC 58.685 50.000 0.00 0.00 0.00 5.80
3312 4966 0.181587 TTCTTTCGAACACAGGGGCA 59.818 50.000 0.00 0.00 0.00 5.36
3313 4967 0.534203 TCTTTCGAACACAGGGGCAC 60.534 55.000 0.00 0.00 0.00 5.01
3327 4981 3.949855 GCACCGCCACCAATTTTG 58.050 55.556 0.00 0.00 0.00 2.44
3328 4982 1.068921 GCACCGCCACCAATTTTGT 59.931 52.632 0.00 0.00 0.00 2.83
3329 4983 0.531753 GCACCGCCACCAATTTTGTT 60.532 50.000 0.00 0.00 0.00 2.83
3330 4984 1.216122 CACCGCCACCAATTTTGTTG 58.784 50.000 0.00 0.00 0.00 3.33
3331 4985 0.827368 ACCGCCACCAATTTTGTTGT 59.173 45.000 0.00 0.00 0.00 3.32
3332 4986 1.202475 ACCGCCACCAATTTTGTTGTC 60.202 47.619 0.00 0.00 0.00 3.18
3333 4987 1.127701 CGCCACCAATTTTGTTGTCG 58.872 50.000 0.00 0.00 0.00 4.35
3334 4988 1.535015 CGCCACCAATTTTGTTGTCGT 60.535 47.619 0.00 0.00 0.00 4.34
3335 4989 2.124122 GCCACCAATTTTGTTGTCGTC 58.876 47.619 0.00 0.00 0.00 4.20
3336 4990 2.480416 GCCACCAATTTTGTTGTCGTCA 60.480 45.455 0.00 0.00 0.00 4.35
3337 4991 3.775202 CCACCAATTTTGTTGTCGTCAA 58.225 40.909 0.00 0.00 0.00 3.18
3349 5003 3.226346 TGTCGTCAACTGTATAGCACC 57.774 47.619 0.00 0.00 0.00 5.01
3350 5004 2.094390 TGTCGTCAACTGTATAGCACCC 60.094 50.000 0.00 0.00 0.00 4.61
3351 5005 1.479323 TCGTCAACTGTATAGCACCCC 59.521 52.381 0.00 0.00 0.00 4.95
3352 5006 1.206132 CGTCAACTGTATAGCACCCCA 59.794 52.381 0.00 0.00 0.00 4.96
3353 5007 2.738643 CGTCAACTGTATAGCACCCCAG 60.739 54.545 0.00 0.00 0.00 4.45
3354 5008 1.837439 TCAACTGTATAGCACCCCAGG 59.163 52.381 0.00 0.00 0.00 4.45
3355 5009 1.837439 CAACTGTATAGCACCCCAGGA 59.163 52.381 0.00 0.00 0.00 3.86
3356 5010 2.238646 CAACTGTATAGCACCCCAGGAA 59.761 50.000 0.00 0.00 0.00 3.36
3357 5011 2.557869 ACTGTATAGCACCCCAGGAAA 58.442 47.619 0.00 0.00 0.00 3.13
3358 5012 3.123273 ACTGTATAGCACCCCAGGAAAT 58.877 45.455 0.00 0.00 0.00 2.17
3359 5013 4.303794 ACTGTATAGCACCCCAGGAAATA 58.696 43.478 0.00 0.00 0.00 1.40
3360 5014 4.913968 ACTGTATAGCACCCCAGGAAATAT 59.086 41.667 0.00 0.00 0.00 1.28
3361 5015 5.013183 ACTGTATAGCACCCCAGGAAATATC 59.987 44.000 0.00 0.00 0.00 1.63
3362 5016 4.288626 TGTATAGCACCCCAGGAAATATCC 59.711 45.833 0.00 0.00 46.98 2.59
3375 5029 5.231265 GGAAATATCCTGTGACCGAAAAC 57.769 43.478 0.00 0.00 42.93 2.43
3376 5030 4.698304 GGAAATATCCTGTGACCGAAAACA 59.302 41.667 0.00 0.00 42.93 2.83
3377 5031 5.391629 GGAAATATCCTGTGACCGAAAACAC 60.392 44.000 0.00 0.00 42.93 3.32
3378 5032 2.930826 ATCCTGTGACCGAAAACACT 57.069 45.000 0.00 0.00 37.81 3.55
3379 5033 2.234300 TCCTGTGACCGAAAACACTC 57.766 50.000 0.00 0.00 37.81 3.51
3380 5034 1.760613 TCCTGTGACCGAAAACACTCT 59.239 47.619 0.00 0.00 37.81 3.24
3381 5035 1.867233 CCTGTGACCGAAAACACTCTG 59.133 52.381 0.00 0.00 37.81 3.35
3382 5036 1.261619 CTGTGACCGAAAACACTCTGC 59.738 52.381 0.00 0.00 37.81 4.26
3383 5037 1.295792 GTGACCGAAAACACTCTGCA 58.704 50.000 0.00 0.00 34.65 4.41
3384 5038 1.668751 GTGACCGAAAACACTCTGCAA 59.331 47.619 0.00 0.00 34.65 4.08
3385 5039 1.668751 TGACCGAAAACACTCTGCAAC 59.331 47.619 0.00 0.00 0.00 4.17
3386 5040 1.002792 GACCGAAAACACTCTGCAACC 60.003 52.381 0.00 0.00 0.00 3.77
3387 5041 1.308998 CCGAAAACACTCTGCAACCT 58.691 50.000 0.00 0.00 0.00 3.50
3388 5042 1.002468 CCGAAAACACTCTGCAACCTG 60.002 52.381 0.00 0.00 0.00 4.00
3389 5043 1.670811 CGAAAACACTCTGCAACCTGT 59.329 47.619 0.00 0.00 0.00 4.00
3390 5044 2.539547 CGAAAACACTCTGCAACCTGTG 60.540 50.000 0.00 0.00 36.59 3.66
3400 5054 3.337834 CAACCTGTGCACCCATACA 57.662 52.632 15.69 0.00 0.00 2.29
3401 5055 1.838112 CAACCTGTGCACCCATACAT 58.162 50.000 15.69 0.00 0.00 2.29
3402 5056 2.997980 CAACCTGTGCACCCATACATA 58.002 47.619 15.69 0.00 0.00 2.29
3403 5057 3.554934 CAACCTGTGCACCCATACATAT 58.445 45.455 15.69 0.00 0.00 1.78
3404 5058 4.713553 CAACCTGTGCACCCATACATATA 58.286 43.478 15.69 0.00 0.00 0.86
3405 5059 4.351874 ACCTGTGCACCCATACATATAC 57.648 45.455 15.69 0.00 0.00 1.47
3406 5060 3.973973 ACCTGTGCACCCATACATATACT 59.026 43.478 15.69 0.00 0.00 2.12
3407 5061 4.040461 ACCTGTGCACCCATACATATACTC 59.960 45.833 15.69 0.00 0.00 2.59
3408 5062 4.284490 CCTGTGCACCCATACATATACTCT 59.716 45.833 15.69 0.00 0.00 3.24
3409 5063 5.221722 CCTGTGCACCCATACATATACTCTT 60.222 44.000 15.69 0.00 0.00 2.85
3410 5064 5.610398 TGTGCACCCATACATATACTCTTG 58.390 41.667 15.69 0.00 0.00 3.02
3411 5065 5.365314 TGTGCACCCATACATATACTCTTGA 59.635 40.000 15.69 0.00 0.00 3.02
3412 5066 5.928839 GTGCACCCATACATATACTCTTGAG 59.071 44.000 5.22 0.00 0.00 3.02
3413 5067 5.602561 TGCACCCATACATATACTCTTGAGT 59.397 40.000 8.41 8.41 0.00 3.41
3414 5068 6.099701 TGCACCCATACATATACTCTTGAGTT 59.900 38.462 8.66 0.63 0.00 3.01
3415 5069 6.647067 GCACCCATACATATACTCTTGAGTTC 59.353 42.308 8.66 0.00 0.00 3.01
3416 5070 7.472100 GCACCCATACATATACTCTTGAGTTCT 60.472 40.741 8.66 0.47 0.00 3.01
3417 5071 9.078990 CACCCATACATATACTCTTGAGTTCTA 57.921 37.037 8.66 2.58 0.00 2.10
3418 5072 9.656323 ACCCATACATATACTCTTGAGTTCTAA 57.344 33.333 8.66 0.00 0.00 2.10
3466 5120 9.243105 ACATTATAACATGGTAAATATCTGCCC 57.757 33.333 0.00 0.00 0.00 5.36
3467 5121 8.686334 CATTATAACATGGTAAATATCTGCCCC 58.314 37.037 0.00 0.00 0.00 5.80
3468 5122 3.140325 ACATGGTAAATATCTGCCCCG 57.860 47.619 0.00 0.00 0.00 5.73
3469 5123 1.812571 CATGGTAAATATCTGCCCCGC 59.187 52.381 0.00 0.00 0.00 6.13
3470 5124 0.840617 TGGTAAATATCTGCCCCGCA 59.159 50.000 0.00 0.00 36.92 5.69
3471 5125 1.213182 TGGTAAATATCTGCCCCGCAA 59.787 47.619 0.00 0.00 38.41 4.85
3472 5126 2.303175 GGTAAATATCTGCCCCGCAAA 58.697 47.619 0.00 0.00 38.41 3.68
3473 5127 2.691011 GGTAAATATCTGCCCCGCAAAA 59.309 45.455 0.00 0.00 38.41 2.44
3474 5128 3.131400 GGTAAATATCTGCCCCGCAAAAA 59.869 43.478 0.00 0.00 38.41 1.94
3500 5154 9.607988 AAAACATGGTAAATATCTATGACGTCA 57.392 29.630 22.48 22.48 0.00 4.35
3501 5155 8.589335 AACATGGTAAATATCTATGACGTCAC 57.411 34.615 22.71 3.50 0.00 3.67
3502 5156 7.722363 ACATGGTAAATATCTATGACGTCACA 58.278 34.615 22.71 8.81 0.00 3.58
3503 5157 8.201464 ACATGGTAAATATCTATGACGTCACAA 58.799 33.333 22.71 11.38 0.00 3.33
3504 5158 9.040939 CATGGTAAATATCTATGACGTCACAAA 57.959 33.333 22.71 9.27 0.00 2.83
3505 5159 9.607988 ATGGTAAATATCTATGACGTCACAAAA 57.392 29.630 22.71 7.31 0.00 2.44
3506 5160 9.438228 TGGTAAATATCTATGACGTCACAAAAA 57.562 29.630 22.71 7.31 0.00 1.94
3514 5168 8.867112 TCTATGACGTCACAAAAATATACTCC 57.133 34.615 22.71 0.00 0.00 3.85
3515 5169 6.920569 ATGACGTCACAAAAATATACTCCC 57.079 37.500 22.71 0.00 0.00 4.30
3516 5170 6.045072 TGACGTCACAAAAATATACTCCCT 57.955 37.500 15.76 0.00 0.00 4.20
3517 5171 6.103997 TGACGTCACAAAAATATACTCCCTC 58.896 40.000 15.76 0.00 0.00 4.30
3518 5172 5.425630 ACGTCACAAAAATATACTCCCTCC 58.574 41.667 0.00 0.00 0.00 4.30
3519 5173 4.506654 CGTCACAAAAATATACTCCCTCCG 59.493 45.833 0.00 0.00 0.00 4.63
3520 5174 5.425630 GTCACAAAAATATACTCCCTCCGT 58.574 41.667 0.00 0.00 0.00 4.69
3521 5175 5.522824 GTCACAAAAATATACTCCCTCCGTC 59.477 44.000 0.00 0.00 0.00 4.79
3522 5176 5.424252 TCACAAAAATATACTCCCTCCGTCT 59.576 40.000 0.00 0.00 0.00 4.18
3523 5177 5.753921 CACAAAAATATACTCCCTCCGTCTC 59.246 44.000 0.00 0.00 0.00 3.36
3524 5178 5.424252 ACAAAAATATACTCCCTCCGTCTCA 59.576 40.000 0.00 0.00 0.00 3.27
3525 5179 6.070424 ACAAAAATATACTCCCTCCGTCTCAA 60.070 38.462 0.00 0.00 0.00 3.02
3526 5180 6.555463 AAAATATACTCCCTCCGTCTCAAA 57.445 37.500 0.00 0.00 0.00 2.69
3527 5181 6.555463 AAATATACTCCCTCCGTCTCAAAA 57.445 37.500 0.00 0.00 0.00 2.44
3528 5182 6.749036 AATATACTCCCTCCGTCTCAAAAT 57.251 37.500 0.00 0.00 0.00 1.82
3529 5183 7.850935 AATATACTCCCTCCGTCTCAAAATA 57.149 36.000 0.00 0.00 0.00 1.40
3530 5184 7.850935 ATATACTCCCTCCGTCTCAAAATAA 57.149 36.000 0.00 0.00 0.00 1.40
3531 5185 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
3532 5186 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
3533 5187 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3534 5188 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
3535 5189 3.684788 CCCTCCGTCTCAAAATAAGTGTG 59.315 47.826 0.00 0.00 0.00 3.82
3536 5190 4.315803 CCTCCGTCTCAAAATAAGTGTGT 58.684 43.478 0.00 0.00 0.00 3.72
3537 5191 4.389077 CCTCCGTCTCAAAATAAGTGTGTC 59.611 45.833 0.00 0.00 0.00 3.67
3538 5192 4.951254 TCCGTCTCAAAATAAGTGTGTCA 58.049 39.130 0.00 0.00 0.00 3.58
3539 5193 5.361427 TCCGTCTCAAAATAAGTGTGTCAA 58.639 37.500 0.00 0.00 0.00 3.18
3731 5385 2.354203 GCCCTAGGACAGAACAAGACTG 60.354 54.545 11.48 0.00 40.68 3.51
4084 5738 1.529244 GGGAGCGATCCATTTGGGG 60.529 63.158 23.22 0.00 37.22 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.870991 GTCCTCTCACAATAGTAAGTTGGC 59.129 45.833 0.00 0.00 0.00 4.52
9 10 4.404073 AGCTGGTCCTCTCACAATAGTAAG 59.596 45.833 0.00 0.00 0.00 2.34
12 13 2.826488 AGCTGGTCCTCTCACAATAGT 58.174 47.619 0.00 0.00 0.00 2.12
54 56 9.838975 CACACAAGCATTCAGTATATAACAAAA 57.161 29.630 0.00 0.00 0.00 2.44
59 61 9.783081 ATGATCACACAAGCATTCAGTATATAA 57.217 29.630 0.00 0.00 0.00 0.98
65 67 3.119602 GCATGATCACACAAGCATTCAGT 60.120 43.478 0.00 0.00 0.00 3.41
66 68 3.119637 TGCATGATCACACAAGCATTCAG 60.120 43.478 0.00 0.00 30.67 3.02
103 105 0.749454 ATCTTGCCCACGCTCATTCC 60.749 55.000 0.00 0.00 35.36 3.01
194 196 2.760092 GGCATGATAGGAGGCAACAAAA 59.240 45.455 0.00 0.00 41.41 2.44
412 424 8.360390 GGACACTCAAATAGAACCAAAAAGATT 58.640 33.333 0.00 0.00 0.00 2.40
550 578 7.741216 CGCGCTAAAATAACTTTTACAGTGTTA 59.259 33.333 5.56 0.00 35.12 2.41
551 579 6.575942 CGCGCTAAAATAACTTTTACAGTGTT 59.424 34.615 5.56 0.00 35.12 3.32
583 611 2.286184 GCATCTTCAACAACACGTCGTT 60.286 45.455 0.00 0.00 38.83 3.85
584 612 1.260561 GCATCTTCAACAACACGTCGT 59.739 47.619 0.00 0.00 0.00 4.34
585 613 1.526887 AGCATCTTCAACAACACGTCG 59.473 47.619 0.00 0.00 0.00 5.12
889 923 0.106066 TCCGGCGGGAGGAGTAAATA 60.106 55.000 27.98 0.00 37.43 1.40
908 942 3.695022 GATGCGTACGTGTCCGGCT 62.695 63.158 17.90 0.00 38.78 5.52
952 994 0.032615 AGTGAGAGGAGCGGAAGGAT 60.033 55.000 0.00 0.00 0.00 3.24
955 997 0.738389 GAGAGTGAGAGGAGCGGAAG 59.262 60.000 0.00 0.00 0.00 3.46
957 999 0.107410 GAGAGAGTGAGAGGAGCGGA 60.107 60.000 0.00 0.00 0.00 5.54
959 1001 1.016627 CTGAGAGAGTGAGAGGAGCG 58.983 60.000 0.00 0.00 0.00 5.03
966 1008 1.135431 CGGTGAAGCTGAGAGAGTGAG 60.135 57.143 0.00 0.00 0.00 3.51
967 1009 0.884514 CGGTGAAGCTGAGAGAGTGA 59.115 55.000 0.00 0.00 0.00 3.41
968 1010 0.600557 ACGGTGAAGCTGAGAGAGTG 59.399 55.000 0.00 0.00 0.00 3.51
969 1011 0.885196 GACGGTGAAGCTGAGAGAGT 59.115 55.000 0.00 0.00 0.00 3.24
970 1012 0.179176 CGACGGTGAAGCTGAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
971 1013 1.876664 CGACGGTGAAGCTGAGAGA 59.123 57.895 0.00 0.00 0.00 3.10
972 1014 1.803519 GCGACGGTGAAGCTGAGAG 60.804 63.158 0.00 0.00 0.00 3.20
973 1015 2.258591 GCGACGGTGAAGCTGAGA 59.741 61.111 0.00 0.00 0.00 3.27
974 1016 3.175240 CGCGACGGTGAAGCTGAG 61.175 66.667 0.00 0.00 0.00 3.35
1275 1324 2.033448 TTGCAGAATCGGCCGGTT 59.967 55.556 26.77 26.77 0.00 4.44
1284 1333 0.036164 TGGTGTAGCCGTTGCAGAAT 59.964 50.000 0.00 0.00 41.13 2.40
1327 1376 0.029035 CGGGATCAAGACGTCCGTAG 59.971 60.000 13.01 0.00 36.38 3.51
1328 1377 0.392863 TCGGGATCAAGACGTCCGTA 60.393 55.000 13.01 0.00 41.27 4.02
1330 1379 1.226603 GTCGGGATCAAGACGTCCG 60.227 63.158 13.01 7.67 41.80 4.79
1336 1385 0.450583 CGAACTCGTCGGGATCAAGA 59.549 55.000 0.00 0.00 46.45 3.02
1337 1386 2.945315 CGAACTCGTCGGGATCAAG 58.055 57.895 0.00 0.00 46.45 3.02
1346 1395 0.944311 TCTTTGCTGGCGAACTCGTC 60.944 55.000 0.00 0.00 45.40 4.20
1347 1396 0.946221 CTCTTTGCTGGCGAACTCGT 60.946 55.000 0.51 0.00 42.22 4.18
1348 1397 1.784062 CTCTTTGCTGGCGAACTCG 59.216 57.895 0.00 0.00 43.27 4.18
1349 1398 1.230635 TGCTCTTTGCTGGCGAACTC 61.231 55.000 0.00 0.00 43.37 3.01
1350 1399 0.819259 TTGCTCTTTGCTGGCGAACT 60.819 50.000 0.00 0.00 43.37 3.01
1351 1400 0.030638 TTTGCTCTTTGCTGGCGAAC 59.969 50.000 0.00 0.00 43.37 3.95
1353 1402 0.961019 ATTTTGCTCTTTGCTGGCGA 59.039 45.000 0.00 0.00 43.37 5.54
1367 1416 5.510674 CGAATCAGCAGAGTAAAGCATTTTG 59.489 40.000 0.00 0.00 40.09 2.44
1368 1417 5.412594 TCGAATCAGCAGAGTAAAGCATTTT 59.587 36.000 0.00 0.00 40.09 1.82
1371 1420 4.118410 CTCGAATCAGCAGAGTAAAGCAT 58.882 43.478 0.00 0.00 0.00 3.79
1379 1428 5.225642 TGCATAATACTCGAATCAGCAGAG 58.774 41.667 0.00 0.00 37.96 3.35
1382 1431 6.482973 TCAATTGCATAATACTCGAATCAGCA 59.517 34.615 0.00 0.00 0.00 4.41
1383 1432 6.891624 TCAATTGCATAATACTCGAATCAGC 58.108 36.000 0.00 0.00 0.00 4.26
1384 1433 7.800380 GGTTCAATTGCATAATACTCGAATCAG 59.200 37.037 0.00 0.00 0.00 2.90
1385 1434 7.255104 GGGTTCAATTGCATAATACTCGAATCA 60.255 37.037 0.00 0.00 0.00 2.57
1386 1435 7.041098 AGGGTTCAATTGCATAATACTCGAATC 60.041 37.037 0.00 0.00 0.00 2.52
1387 1436 6.772716 AGGGTTCAATTGCATAATACTCGAAT 59.227 34.615 0.00 0.00 0.00 3.34
1388 1437 6.038161 CAGGGTTCAATTGCATAATACTCGAA 59.962 38.462 0.00 0.00 0.00 3.71
1390 1439 5.527214 TCAGGGTTCAATTGCATAATACTCG 59.473 40.000 0.00 0.00 0.00 4.18
1391 1440 6.942532 TCAGGGTTCAATTGCATAATACTC 57.057 37.500 0.00 0.00 0.00 2.59
1393 1442 5.979517 GCTTCAGGGTTCAATTGCATAATAC 59.020 40.000 0.00 0.00 0.00 1.89
1394 1443 5.893255 AGCTTCAGGGTTCAATTGCATAATA 59.107 36.000 0.00 0.00 0.00 0.98
1397 1446 3.700538 AGCTTCAGGGTTCAATTGCATA 58.299 40.909 0.00 0.00 0.00 3.14
1398 1447 2.532843 AGCTTCAGGGTTCAATTGCAT 58.467 42.857 0.00 0.00 0.00 3.96
1399 1448 1.999648 AGCTTCAGGGTTCAATTGCA 58.000 45.000 0.00 0.00 0.00 4.08
1407 1456 2.173569 ACAGTTCAGAAGCTTCAGGGTT 59.826 45.455 27.57 4.18 38.46 4.11
1408 1457 1.771255 ACAGTTCAGAAGCTTCAGGGT 59.229 47.619 27.57 13.42 0.00 4.34
1409 1458 2.421619 GACAGTTCAGAAGCTTCAGGG 58.578 52.381 27.57 16.30 0.00 4.45
1410 1459 2.064762 CGACAGTTCAGAAGCTTCAGG 58.935 52.381 27.57 18.71 0.00 3.86
1411 1460 2.728839 GTCGACAGTTCAGAAGCTTCAG 59.271 50.000 27.57 20.18 0.00 3.02
1416 1476 0.033504 TGGGTCGACAGTTCAGAAGC 59.966 55.000 18.91 0.00 0.00 3.86
1426 1486 0.817654 CATGTCTAGCTGGGTCGACA 59.182 55.000 18.91 9.00 40.27 4.35
1430 1490 3.550437 ATGAACATGTCTAGCTGGGTC 57.450 47.619 0.00 0.00 0.00 4.46
1433 1493 6.293081 CGGATAAAATGAACATGTCTAGCTGG 60.293 42.308 0.00 0.00 0.00 4.85
1435 1495 5.760253 CCGGATAAAATGAACATGTCTAGCT 59.240 40.000 0.00 0.00 0.00 3.32
1442 1502 4.097741 TGAAGCCCGGATAAAATGAACATG 59.902 41.667 0.73 0.00 0.00 3.21
1443 1503 4.277476 TGAAGCCCGGATAAAATGAACAT 58.723 39.130 0.73 0.00 0.00 2.71
1445 1505 3.945285 TCTGAAGCCCGGATAAAATGAAC 59.055 43.478 0.73 0.00 0.00 3.18
1446 1506 3.945285 GTCTGAAGCCCGGATAAAATGAA 59.055 43.478 0.73 0.00 31.82 2.57
1447 1507 3.054728 TGTCTGAAGCCCGGATAAAATGA 60.055 43.478 0.73 0.00 31.82 2.57
1448 1508 3.278574 TGTCTGAAGCCCGGATAAAATG 58.721 45.455 0.73 0.00 31.82 2.32
1450 1510 3.278574 CATGTCTGAAGCCCGGATAAAA 58.721 45.455 0.73 0.00 31.82 1.52
1453 1513 1.496060 ACATGTCTGAAGCCCGGATA 58.504 50.000 0.73 0.00 31.82 2.59
1455 1515 0.036388 GAACATGTCTGAAGCCCGGA 60.036 55.000 0.73 0.00 0.00 5.14
1456 1516 0.321564 TGAACATGTCTGAAGCCCGG 60.322 55.000 0.00 0.00 0.00 5.73
1457 1517 1.742761 ATGAACATGTCTGAAGCCCG 58.257 50.000 0.00 0.00 0.00 6.13
1458 1518 4.525912 AAAATGAACATGTCTGAAGCCC 57.474 40.909 0.00 0.00 0.00 5.19
1459 1519 6.532657 CCAATAAAATGAACATGTCTGAAGCC 59.467 38.462 0.00 0.00 0.00 4.35
1480 1540 4.513442 TGAAGTAGCGATAAAGCACCAAT 58.487 39.130 0.00 0.00 40.15 3.16
1487 1547 6.670927 GCTTGTCACTTGAAGTAGCGATAAAG 60.671 42.308 0.00 2.21 0.00 1.85
1494 1554 4.387256 CACTAGCTTGTCACTTGAAGTAGC 59.613 45.833 9.24 9.24 0.00 3.58
1495 1555 5.533482 ACACTAGCTTGTCACTTGAAGTAG 58.467 41.667 0.00 0.00 0.00 2.57
1498 1558 5.741388 AAACACTAGCTTGTCACTTGAAG 57.259 39.130 0.00 0.00 0.00 3.02
1502 1562 5.193679 AGGAAAAACACTAGCTTGTCACTT 58.806 37.500 0.00 0.00 0.00 3.16
1508 1568 4.044426 GCACAAGGAAAAACACTAGCTTG 58.956 43.478 0.00 0.00 0.00 4.01
1516 1576 3.317711 ACATGATCGCACAAGGAAAAACA 59.682 39.130 0.00 0.00 0.00 2.83
1521 1581 2.351641 GCAAACATGATCGCACAAGGAA 60.352 45.455 0.00 0.00 0.00 3.36
1523 1583 1.621107 GCAAACATGATCGCACAAGG 58.379 50.000 0.00 0.00 0.00 3.61
1524 1584 1.068402 TGGCAAACATGATCGCACAAG 60.068 47.619 0.00 0.00 0.00 3.16
1525 1585 0.957362 TGGCAAACATGATCGCACAA 59.043 45.000 0.00 0.00 0.00 3.33
1528 1588 0.322366 TCCTGGCAAACATGATCGCA 60.322 50.000 0.00 0.00 0.00 5.10
1529 1589 1.027357 ATCCTGGCAAACATGATCGC 58.973 50.000 0.00 0.00 29.75 4.58
1530 1590 2.684374 TGAATCCTGGCAAACATGATCG 59.316 45.455 0.00 0.00 33.94 3.69
1531 1591 4.082081 TGTTGAATCCTGGCAAACATGATC 60.082 41.667 0.00 0.00 33.94 2.92
1532 1592 3.833650 TGTTGAATCCTGGCAAACATGAT 59.166 39.130 0.00 0.00 36.20 2.45
1533 1593 3.229293 TGTTGAATCCTGGCAAACATGA 58.771 40.909 0.00 0.00 0.00 3.07
1534 1594 3.663995 TGTTGAATCCTGGCAAACATG 57.336 42.857 0.00 0.00 0.00 3.21
1535 1595 4.686191 TTTGTTGAATCCTGGCAAACAT 57.314 36.364 1.42 0.00 0.00 2.71
1536 1596 4.478206 TTTTGTTGAATCCTGGCAAACA 57.522 36.364 0.00 0.00 0.00 2.83
1537 1597 5.115480 TCTTTTTGTTGAATCCTGGCAAAC 58.885 37.500 0.00 0.00 0.00 2.93
1546 1608 4.335400 TTGCCCCTCTTTTTGTTGAATC 57.665 40.909 0.00 0.00 0.00 2.52
1551 1613 3.213506 GCATTTTGCCCCTCTTTTTGTT 58.786 40.909 0.00 0.00 37.42 2.83
1554 1616 2.439135 ACTGCATTTTGCCCCTCTTTTT 59.561 40.909 0.00 0.00 44.23 1.94
1562 1624 3.874392 ATTCTACACTGCATTTTGCCC 57.126 42.857 0.00 0.00 44.23 5.36
1564 1626 5.691305 TCACAAATTCTACACTGCATTTTGC 59.309 36.000 0.00 0.00 45.29 3.68
1571 1633 5.927030 TCGAATTCACAAATTCTACACTGC 58.073 37.500 6.22 0.00 45.72 4.40
1576 1638 8.443160 TCAGTGATTCGAATTCACAAATTCTAC 58.557 33.333 27.30 9.42 45.72 2.59
1580 1645 7.596494 ACATCAGTGATTCGAATTCACAAATT 58.404 30.769 27.30 14.05 37.80 1.82
1590 1655 5.661056 AGAAGGTACATCAGTGATTCGAA 57.339 39.130 1.86 0.00 0.00 3.71
1591 1656 6.961360 ATAGAAGGTACATCAGTGATTCGA 57.039 37.500 1.86 0.00 0.00 3.71
1592 1657 7.706607 TCAAATAGAAGGTACATCAGTGATTCG 59.293 37.037 1.86 0.00 0.00 3.34
1593 1658 8.948631 TCAAATAGAAGGTACATCAGTGATTC 57.051 34.615 1.86 0.00 0.00 2.52
1595 1660 9.739276 TTTTCAAATAGAAGGTACATCAGTGAT 57.261 29.630 0.00 0.00 37.57 3.06
1639 1704 4.397420 ACTGATGCAAACATACCAGACAA 58.603 39.130 0.00 0.00 36.35 3.18
1672 1737 6.113411 ACTAGGAAACTTACGCATATGCTTT 58.887 36.000 24.56 17.13 43.67 3.51
1676 1750 8.566260 ACTAGTACTAGGAAACTTACGCATATG 58.434 37.037 29.05 0.00 43.67 1.78
1700 1774 9.748708 CTCTAGTAGTACGAGTACATCTTTACT 57.251 37.037 14.83 13.88 38.48 2.24
1701 1775 8.487176 GCTCTAGTAGTACGAGTACATCTTTAC 58.513 40.741 14.83 8.37 38.48 2.01
1703 1777 7.046652 TGCTCTAGTAGTACGAGTACATCTTT 58.953 38.462 14.83 0.00 38.48 2.52
1704 1778 6.580788 TGCTCTAGTAGTACGAGTACATCTT 58.419 40.000 14.83 0.00 38.48 2.40
1705 1779 6.040729 TCTGCTCTAGTAGTACGAGTACATCT 59.959 42.308 14.83 13.30 38.48 2.90
1706 1780 6.215121 TCTGCTCTAGTAGTACGAGTACATC 58.785 44.000 14.83 7.66 38.48 3.06
1707 1781 6.159299 TCTGCTCTAGTAGTACGAGTACAT 57.841 41.667 14.83 4.17 38.48 2.29
1708 1782 5.588958 TCTGCTCTAGTAGTACGAGTACA 57.411 43.478 14.83 8.50 38.48 2.90
1709 1783 6.272698 GTTCTGCTCTAGTAGTACGAGTAC 57.727 45.833 9.86 5.32 36.35 2.73
1715 1789 4.352600 TTGCGTTCTGCTCTAGTAGTAC 57.647 45.455 0.00 0.00 46.63 2.73
1716 1790 4.882427 AGATTGCGTTCTGCTCTAGTAGTA 59.118 41.667 0.00 0.00 46.63 1.82
1717 1791 3.697045 AGATTGCGTTCTGCTCTAGTAGT 59.303 43.478 0.00 0.00 46.63 2.73
1718 1792 4.300189 AGATTGCGTTCTGCTCTAGTAG 57.700 45.455 0.00 0.00 46.63 2.57
1733 1902 2.608090 GGTAAAGACCGCACTAGATTGC 59.392 50.000 0.00 0.00 35.52 3.56
1747 1916 2.565391 TCAATGCTCTGTCCGGTAAAGA 59.435 45.455 0.00 2.16 0.00 2.52
1796 3061 4.218417 TCTCACTGTGATGAGTCAATTCGA 59.782 41.667 11.45 0.00 45.41 3.71
1799 3064 5.105595 TCGATCTCACTGTGATGAGTCAATT 60.106 40.000 11.45 0.00 45.41 2.32
1803 3068 4.101942 GTTCGATCTCACTGTGATGAGTC 58.898 47.826 11.45 6.41 45.41 3.36
1824 3094 4.558226 TCTGTTCCATAGATGCAACTGT 57.442 40.909 6.76 0.00 0.00 3.55
1834 3104 3.824133 TGATGGCCATTCTGTTCCATAG 58.176 45.455 21.84 0.00 39.25 2.23
1851 3121 1.226379 GTTGTTGCGGCGGATGATG 60.226 57.895 9.78 0.00 0.00 3.07
1858 3128 2.082366 GCAATCTGTTGTTGCGGCG 61.082 57.895 0.51 0.51 42.01 6.46
1882 3156 1.272490 TCGGAGTACAGAACTGCAAGG 59.728 52.381 1.46 0.00 46.35 3.61
1883 3157 2.724977 TCGGAGTACAGAACTGCAAG 57.275 50.000 1.46 0.00 46.35 4.01
1884 3158 3.462483 TTTCGGAGTACAGAACTGCAA 57.538 42.857 1.46 0.00 46.35 4.08
1886 3160 4.691216 AGAATTTTCGGAGTACAGAACTGC 59.309 41.667 1.46 0.00 42.81 4.40
1887 3161 6.787085 AAGAATTTTCGGAGTACAGAACTG 57.213 37.500 0.00 0.00 39.07 3.16
1907 3181 4.933505 TTGGTCAATCATGCACAAAAGA 57.066 36.364 0.00 0.00 0.00 2.52
1911 3185 3.007074 AGCATTTGGTCAATCATGCACAA 59.993 39.130 17.36 0.00 43.81 3.33
1938 3212 5.941948 ACAAAATAACACCAGTACTCAGC 57.058 39.130 0.00 0.00 0.00 4.26
1941 3215 5.063060 CGGCTACAAAATAACACCAGTACTC 59.937 44.000 0.00 0.00 0.00 2.59
1942 3216 4.933400 CGGCTACAAAATAACACCAGTACT 59.067 41.667 0.00 0.00 0.00 2.73
1943 3217 4.931002 TCGGCTACAAAATAACACCAGTAC 59.069 41.667 0.00 0.00 0.00 2.73
1944 3218 5.149973 TCGGCTACAAAATAACACCAGTA 57.850 39.130 0.00 0.00 0.00 2.74
1945 3219 4.000988 CTCGGCTACAAAATAACACCAGT 58.999 43.478 0.00 0.00 0.00 4.00
1946 3220 3.181510 GCTCGGCTACAAAATAACACCAG 60.182 47.826 0.00 0.00 0.00 4.00
1947 3221 2.745281 GCTCGGCTACAAAATAACACCA 59.255 45.455 0.00 0.00 0.00 4.17
1949 3223 3.727970 GCAGCTCGGCTACAAAATAACAC 60.728 47.826 0.00 0.00 36.40 3.32
1951 3225 2.678336 AGCAGCTCGGCTACAAAATAAC 59.322 45.455 0.00 0.00 43.70 1.89
1959 3311 2.512515 CCCAAGCAGCTCGGCTAC 60.513 66.667 0.00 0.00 45.07 3.58
1960 3312 4.473520 GCCCAAGCAGCTCGGCTA 62.474 66.667 21.36 0.00 45.07 3.93
2063 3415 2.490217 CCGCTGTCGTCGAGGATT 59.510 61.111 11.48 0.00 0.00 3.01
2075 3427 1.683790 CTACGAAGTTTCCGCCGCTG 61.684 60.000 0.00 0.00 37.78 5.18
2081 3433 4.026804 CGATGAATTCCTACGAAGTTTCCG 60.027 45.833 2.27 0.00 37.78 4.30
2094 3446 2.240493 ATCACCGGTCGATGAATTCC 57.760 50.000 2.59 0.00 0.00 3.01
2104 3456 4.962155 AGAATTAGATCCAATCACCGGTC 58.038 43.478 2.59 0.00 0.00 4.79
2106 3458 7.161404 TGATAAGAATTAGATCCAATCACCGG 58.839 38.462 0.00 0.00 31.76 5.28
2107 3459 8.499162 GTTGATAAGAATTAGATCCAATCACCG 58.501 37.037 0.00 0.00 31.76 4.94
2108 3460 9.566432 AGTTGATAAGAATTAGATCCAATCACC 57.434 33.333 0.00 0.00 31.76 4.02
2116 3475 9.737427 TCGTCAGAAGTTGATAAGAATTAGATC 57.263 33.333 0.00 0.00 38.29 2.75
2125 3484 7.490725 AGTTGATCATCGTCAGAAGTTGATAAG 59.509 37.037 9.20 0.00 38.29 1.73
2127 3486 6.753744 CAGTTGATCATCGTCAGAAGTTGATA 59.246 38.462 9.20 0.00 38.29 2.15
2153 3512 4.798924 GCAACCTGCATTGATTACAACCAA 60.799 41.667 4.21 0.00 44.26 3.67
2154 3513 3.305950 GCAACCTGCATTGATTACAACCA 60.306 43.478 4.21 0.00 44.26 3.67
2189 3548 3.368427 CGAAGTTCTGGATCTGCTGGTTA 60.368 47.826 0.56 0.00 0.00 2.85
2298 3672 0.834687 AGGTAGTCGTTGCTCCCCAA 60.835 55.000 0.00 0.00 0.00 4.12
2390 3764 1.279271 AGCTGGGAGGTGTATTGTGTC 59.721 52.381 0.00 0.00 0.00 3.67
2400 3774 1.229082 TTACGGTGAGCTGGGAGGT 60.229 57.895 0.00 0.00 0.00 3.85
2426 3800 4.500887 GGGCTAAGGGTTTTGACTTTTGAC 60.501 45.833 0.00 0.00 0.00 3.18
2433 3807 2.719739 GGTAGGGCTAAGGGTTTTGAC 58.280 52.381 0.00 0.00 0.00 3.18
2434 3808 1.279846 CGGTAGGGCTAAGGGTTTTGA 59.720 52.381 0.00 0.00 0.00 2.69
2435 3809 1.003928 ACGGTAGGGCTAAGGGTTTTG 59.996 52.381 0.00 0.00 0.00 2.44
2436 3810 1.365293 ACGGTAGGGCTAAGGGTTTT 58.635 50.000 0.00 0.00 0.00 2.43
2437 3811 2.252535 TACGGTAGGGCTAAGGGTTT 57.747 50.000 0.00 0.00 0.00 3.27
2438 3812 2.252535 TTACGGTAGGGCTAAGGGTT 57.747 50.000 0.00 0.00 0.00 4.11
2439 3813 2.044758 CATTACGGTAGGGCTAAGGGT 58.955 52.381 0.00 0.00 0.00 4.34
2440 3814 2.044758 ACATTACGGTAGGGCTAAGGG 58.955 52.381 0.00 0.00 0.00 3.95
2441 3815 2.433239 ACACATTACGGTAGGGCTAAGG 59.567 50.000 0.00 0.00 0.00 2.69
2442 3816 3.118884 ACACACATTACGGTAGGGCTAAG 60.119 47.826 0.00 0.00 0.00 2.18
2443 3817 2.833338 ACACACATTACGGTAGGGCTAA 59.167 45.455 0.00 0.00 0.00 3.09
2444 3818 2.459644 ACACACATTACGGTAGGGCTA 58.540 47.619 0.00 0.00 0.00 3.93
2445 3819 1.272807 ACACACATTACGGTAGGGCT 58.727 50.000 0.00 0.00 0.00 5.19
2446 3820 2.004733 GAACACACATTACGGTAGGGC 58.995 52.381 0.00 0.00 0.00 5.19
2456 3830 3.701040 ACTTCCAAGCAAGAACACACATT 59.299 39.130 0.00 0.00 0.00 2.71
2907 4312 2.360350 ATGAAGGGCAGGCACGTG 60.360 61.111 12.28 12.28 0.00 4.49
3113 4518 2.669434 CGGAGTACTCGATCTAGCTAGC 59.331 54.545 16.35 6.62 0.00 3.42
3114 4519 3.916761 ACGGAGTACTCGATCTAGCTAG 58.083 50.000 15.01 15.01 41.94 3.42
3115 4520 4.522405 ACTACGGAGTACTCGATCTAGCTA 59.478 45.833 16.56 0.00 45.11 3.32
3116 4521 2.914695 ACGGAGTACTCGATCTAGCT 57.085 50.000 16.56 0.00 41.94 3.32
3117 4522 3.652274 ACTACGGAGTACTCGATCTAGC 58.348 50.000 16.56 0.13 45.11 3.42
3118 4523 7.887996 ATTAACTACGGAGTACTCGATCTAG 57.112 40.000 16.56 13.04 45.11 2.43
3119 4524 9.935241 ATTATTAACTACGGAGTACTCGATCTA 57.065 33.333 16.56 2.68 45.11 1.98
3120 4525 8.845413 ATTATTAACTACGGAGTACTCGATCT 57.155 34.615 16.56 1.64 45.11 2.75
3121 4526 8.934825 AGATTATTAACTACGGAGTACTCGATC 58.065 37.037 16.56 3.03 45.11 3.69
3122 4527 8.719648 CAGATTATTAACTACGGAGTACTCGAT 58.280 37.037 16.56 9.49 45.11 3.59
3123 4528 7.928167 TCAGATTATTAACTACGGAGTACTCGA 59.072 37.037 16.56 3.91 45.11 4.04
3124 4529 8.081208 TCAGATTATTAACTACGGAGTACTCG 57.919 38.462 16.56 13.72 45.11 4.18
3162 4567 2.879907 GCATGCGGCAGACAACAT 59.120 55.556 9.25 0.00 43.97 2.71
3265 4672 3.202818 TCCTTCCCATGGAGTACTACGTA 59.797 47.826 15.22 0.00 31.21 3.57
3266 4673 2.024655 TCCTTCCCATGGAGTACTACGT 60.025 50.000 15.22 0.00 31.21 3.57
3267 4674 2.623889 CTCCTTCCCATGGAGTACTACG 59.376 54.545 15.22 0.00 44.42 3.51
3310 4964 0.531753 AACAAAATTGGTGGCGGTGC 60.532 50.000 0.00 0.00 0.00 5.01
3311 4965 1.216122 CAACAAAATTGGTGGCGGTG 58.784 50.000 3.22 0.00 42.09 4.94
3312 4966 1.202475 GACAACAAAATTGGTGGCGGT 60.202 47.619 15.09 0.00 45.16 5.68
3313 4967 1.496934 GACAACAAAATTGGTGGCGG 58.503 50.000 15.09 0.00 45.16 6.13
3328 4982 3.581755 GGTGCTATACAGTTGACGACAA 58.418 45.455 0.00 0.00 0.00 3.18
3329 4983 2.094390 GGGTGCTATACAGTTGACGACA 60.094 50.000 0.00 0.00 0.00 4.35
3330 4984 2.537401 GGGTGCTATACAGTTGACGAC 58.463 52.381 0.00 0.00 0.00 4.34
3331 4985 1.479323 GGGGTGCTATACAGTTGACGA 59.521 52.381 0.00 0.00 0.00 4.20
3332 4986 1.206132 TGGGGTGCTATACAGTTGACG 59.794 52.381 0.00 0.00 0.00 4.35
3333 4987 2.420129 CCTGGGGTGCTATACAGTTGAC 60.420 54.545 0.00 0.00 0.00 3.18
3334 4988 1.837439 CCTGGGGTGCTATACAGTTGA 59.163 52.381 0.00 0.00 0.00 3.18
3335 4989 1.837439 TCCTGGGGTGCTATACAGTTG 59.163 52.381 0.00 0.00 0.00 3.16
3336 4990 2.263895 TCCTGGGGTGCTATACAGTT 57.736 50.000 0.00 0.00 0.00 3.16
3337 4991 2.263895 TTCCTGGGGTGCTATACAGT 57.736 50.000 0.00 0.00 0.00 3.55
3338 4992 3.864789 ATTTCCTGGGGTGCTATACAG 57.135 47.619 0.00 0.00 0.00 2.74
3339 4993 4.288626 GGATATTTCCTGGGGTGCTATACA 59.711 45.833 0.00 0.00 39.14 2.29
3340 4994 4.844884 GGATATTTCCTGGGGTGCTATAC 58.155 47.826 0.00 0.00 39.14 1.47
3353 5007 4.698304 TGTTTTCGGTCACAGGATATTTCC 59.302 41.667 0.00 0.00 42.96 3.13
3354 5008 5.411669 AGTGTTTTCGGTCACAGGATATTTC 59.588 40.000 0.00 0.00 37.07 2.17
3355 5009 5.313712 AGTGTTTTCGGTCACAGGATATTT 58.686 37.500 0.00 0.00 37.07 1.40
3356 5010 4.906618 AGTGTTTTCGGTCACAGGATATT 58.093 39.130 0.00 0.00 37.07 1.28
3357 5011 4.223032 AGAGTGTTTTCGGTCACAGGATAT 59.777 41.667 0.00 0.00 37.07 1.63
3358 5012 3.576982 AGAGTGTTTTCGGTCACAGGATA 59.423 43.478 0.00 0.00 37.07 2.59
3359 5013 2.368875 AGAGTGTTTTCGGTCACAGGAT 59.631 45.455 0.00 0.00 37.07 3.24
3360 5014 1.760613 AGAGTGTTTTCGGTCACAGGA 59.239 47.619 0.00 0.00 37.07 3.86
3361 5015 1.867233 CAGAGTGTTTTCGGTCACAGG 59.133 52.381 0.00 0.00 37.07 4.00
3362 5016 1.261619 GCAGAGTGTTTTCGGTCACAG 59.738 52.381 0.00 0.00 37.07 3.66
3363 5017 1.295792 GCAGAGTGTTTTCGGTCACA 58.704 50.000 0.00 0.00 37.07 3.58
3364 5018 1.295792 TGCAGAGTGTTTTCGGTCAC 58.704 50.000 0.00 0.00 35.13 3.67
3365 5019 1.668751 GTTGCAGAGTGTTTTCGGTCA 59.331 47.619 0.00 0.00 0.00 4.02
3366 5020 1.002792 GGTTGCAGAGTGTTTTCGGTC 60.003 52.381 0.00 0.00 0.00 4.79
3367 5021 1.021968 GGTTGCAGAGTGTTTTCGGT 58.978 50.000 0.00 0.00 0.00 4.69
3368 5022 1.002468 CAGGTTGCAGAGTGTTTTCGG 60.002 52.381 0.00 0.00 0.00 4.30
3369 5023 1.670811 ACAGGTTGCAGAGTGTTTTCG 59.329 47.619 0.00 0.00 0.00 3.46
3370 5024 3.070429 CACAGGTTGCAGAGTGTTTTC 57.930 47.619 0.00 0.00 0.00 2.29
3382 5036 1.838112 ATGTATGGGTGCACAGGTTG 58.162 50.000 20.43 0.00 0.00 3.77
3383 5037 3.951563 ATATGTATGGGTGCACAGGTT 57.048 42.857 20.43 2.56 0.00 3.50
3384 5038 3.973973 AGTATATGTATGGGTGCACAGGT 59.026 43.478 20.43 5.75 0.00 4.00
3385 5039 4.284490 AGAGTATATGTATGGGTGCACAGG 59.716 45.833 20.43 0.00 0.00 4.00
3386 5040 5.474578 AGAGTATATGTATGGGTGCACAG 57.525 43.478 20.43 0.00 0.00 3.66
3387 5041 5.365314 TCAAGAGTATATGTATGGGTGCACA 59.635 40.000 20.43 0.00 0.00 4.57
3388 5042 5.853936 TCAAGAGTATATGTATGGGTGCAC 58.146 41.667 8.80 8.80 0.00 4.57
3389 5043 5.602561 ACTCAAGAGTATATGTATGGGTGCA 59.397 40.000 0.00 0.00 40.43 4.57
3390 5044 6.102897 ACTCAAGAGTATATGTATGGGTGC 57.897 41.667 0.00 0.00 40.43 5.01
3391 5045 7.957002 AGAACTCAAGAGTATATGTATGGGTG 58.043 38.462 2.72 0.00 41.58 4.61
3392 5046 9.656323 TTAGAACTCAAGAGTATATGTATGGGT 57.344 33.333 2.72 0.00 41.58 4.51
3440 5094 9.243105 GGGCAGATATTTACCATGTTATAATGT 57.757 33.333 0.00 0.00 0.00 2.71
3441 5095 8.686334 GGGGCAGATATTTACCATGTTATAATG 58.314 37.037 0.00 0.00 0.00 1.90
3442 5096 7.556275 CGGGGCAGATATTTACCATGTTATAAT 59.444 37.037 0.00 0.00 0.00 1.28
3443 5097 6.882140 CGGGGCAGATATTTACCATGTTATAA 59.118 38.462 0.00 0.00 0.00 0.98
3444 5098 6.411376 CGGGGCAGATATTTACCATGTTATA 58.589 40.000 0.00 0.00 0.00 0.98
3445 5099 5.253330 CGGGGCAGATATTTACCATGTTAT 58.747 41.667 0.00 0.00 0.00 1.89
3446 5100 4.647611 CGGGGCAGATATTTACCATGTTA 58.352 43.478 0.00 0.00 0.00 2.41
3447 5101 3.486383 CGGGGCAGATATTTACCATGTT 58.514 45.455 0.00 0.00 0.00 2.71
3448 5102 2.814097 GCGGGGCAGATATTTACCATGT 60.814 50.000 0.00 0.00 0.00 3.21
3449 5103 1.812571 GCGGGGCAGATATTTACCATG 59.187 52.381 0.00 0.00 0.00 3.66
3450 5104 1.423541 TGCGGGGCAGATATTTACCAT 59.576 47.619 0.00 0.00 33.32 3.55
3451 5105 0.840617 TGCGGGGCAGATATTTACCA 59.159 50.000 0.00 0.00 33.32 3.25
3452 5106 1.975660 TTGCGGGGCAGATATTTACC 58.024 50.000 0.00 0.00 40.61 2.85
3453 5107 4.379339 TTTTTGCGGGGCAGATATTTAC 57.621 40.909 0.00 0.00 40.61 2.01
3474 5128 9.607988 TGACGTCATAGATATTTACCATGTTTT 57.392 29.630 15.76 0.00 0.00 2.43
3475 5129 9.042008 GTGACGTCATAGATATTTACCATGTTT 57.958 33.333 23.12 0.00 0.00 2.83
3476 5130 8.201464 TGTGACGTCATAGATATTTACCATGTT 58.799 33.333 23.12 0.00 0.00 2.71
3477 5131 7.722363 TGTGACGTCATAGATATTTACCATGT 58.278 34.615 23.12 0.00 0.00 3.21
3478 5132 8.587952 TTGTGACGTCATAGATATTTACCATG 57.412 34.615 23.12 0.00 0.00 3.66
3479 5133 9.607988 TTTTGTGACGTCATAGATATTTACCAT 57.392 29.630 23.12 0.00 0.00 3.55
3480 5134 9.438228 TTTTTGTGACGTCATAGATATTTACCA 57.562 29.630 23.12 7.26 0.00 3.25
3488 5142 9.477484 GGAGTATATTTTTGTGACGTCATAGAT 57.523 33.333 23.12 15.38 0.00 1.98
3489 5143 7.924412 GGGAGTATATTTTTGTGACGTCATAGA 59.076 37.037 23.12 11.84 0.00 1.98
3490 5144 7.926555 AGGGAGTATATTTTTGTGACGTCATAG 59.073 37.037 23.12 0.00 0.00 2.23
3491 5145 7.788026 AGGGAGTATATTTTTGTGACGTCATA 58.212 34.615 23.12 17.17 0.00 2.15
3492 5146 6.650120 AGGGAGTATATTTTTGTGACGTCAT 58.350 36.000 23.12 6.95 0.00 3.06
3493 5147 6.045072 AGGGAGTATATTTTTGTGACGTCA 57.955 37.500 15.76 15.76 0.00 4.35
3494 5148 5.522824 GGAGGGAGTATATTTTTGTGACGTC 59.477 44.000 9.11 9.11 0.00 4.34
3495 5149 5.425630 GGAGGGAGTATATTTTTGTGACGT 58.574 41.667 0.00 0.00 0.00 4.34
3496 5150 4.506654 CGGAGGGAGTATATTTTTGTGACG 59.493 45.833 0.00 0.00 0.00 4.35
3497 5151 5.425630 ACGGAGGGAGTATATTTTTGTGAC 58.574 41.667 0.00 0.00 0.00 3.67
3498 5152 5.424252 AGACGGAGGGAGTATATTTTTGTGA 59.576 40.000 0.00 0.00 0.00 3.58
3499 5153 5.671493 AGACGGAGGGAGTATATTTTTGTG 58.329 41.667 0.00 0.00 0.00 3.33
3500 5154 5.424252 TGAGACGGAGGGAGTATATTTTTGT 59.576 40.000 0.00 0.00 0.00 2.83
3501 5155 5.914033 TGAGACGGAGGGAGTATATTTTTG 58.086 41.667 0.00 0.00 0.00 2.44
3502 5156 6.555463 TTGAGACGGAGGGAGTATATTTTT 57.445 37.500 0.00 0.00 0.00 1.94
3503 5157 6.555463 TTTGAGACGGAGGGAGTATATTTT 57.445 37.500 0.00 0.00 0.00 1.82
3504 5158 6.555463 TTTTGAGACGGAGGGAGTATATTT 57.445 37.500 0.00 0.00 0.00 1.40
3505 5159 6.749036 ATTTTGAGACGGAGGGAGTATATT 57.251 37.500 0.00 0.00 0.00 1.28
3506 5160 7.509659 ACTTATTTTGAGACGGAGGGAGTATAT 59.490 37.037 0.00 0.00 0.00 0.86
3507 5161 6.837568 ACTTATTTTGAGACGGAGGGAGTATA 59.162 38.462 0.00 0.00 0.00 1.47
3508 5162 5.661759 ACTTATTTTGAGACGGAGGGAGTAT 59.338 40.000 0.00 0.00 0.00 2.12
3509 5163 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
3510 5164 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
3511 5165 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3512 5166 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3513 5167 3.684788 CACACTTATTTTGAGACGGAGGG 59.315 47.826 0.00 0.00 0.00 4.30
3514 5168 4.315803 ACACACTTATTTTGAGACGGAGG 58.684 43.478 0.00 0.00 0.00 4.30
3515 5169 4.988540 TGACACACTTATTTTGAGACGGAG 59.011 41.667 0.00 0.00 0.00 4.63
3516 5170 4.951254 TGACACACTTATTTTGAGACGGA 58.049 39.130 0.00 0.00 0.00 4.69
3517 5171 5.236478 AGTTGACACACTTATTTTGAGACGG 59.764 40.000 0.00 0.00 0.00 4.79
3518 5172 6.287107 AGTTGACACACTTATTTTGAGACG 57.713 37.500 0.00 0.00 0.00 4.18
3519 5173 8.911247 AAAAGTTGACACACTTATTTTGAGAC 57.089 30.769 4.24 0.00 35.87 3.36
3731 5385 4.737054 CAGTTGGGCTTTATTGATCACAC 58.263 43.478 0.00 0.00 0.00 3.82
3821 5475 1.078567 GCCAGACTCTCCAGCTTGG 60.079 63.158 0.00 0.00 39.43 3.61
4084 5738 1.075301 CCCAACCCCAATCCCATCC 60.075 63.158 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.