Multiple sequence alignment - TraesCS7D01G315600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G315600 chr7D 100.000 3336 0 0 1 3336 401718658 401715323 0.000000e+00 6161.0
1 TraesCS7D01G315600 chr7D 94.444 360 18 2 1686 2044 266894521 266894879 1.350000e-153 553.0
2 TraesCS7D01G315600 chr7D 91.111 90 5 1 3010 3096 632805382 632805293 5.850000e-23 119.0
3 TraesCS7D01G315600 chr7B 94.022 2158 72 21 805 2919 411342963 411340820 0.000000e+00 3217.0
4 TraesCS7D01G315600 chr7B 90.667 525 43 5 282 801 707963657 707963134 0.000000e+00 693.0
5 TraesCS7D01G315600 chr7B 91.930 285 19 4 2 283 411343260 411342977 2.410000e-106 396.0
6 TraesCS7D01G315600 chr7A 95.308 1492 52 8 807 2291 459462257 459460777 0.000000e+00 2351.0
7 TraesCS7D01G315600 chr7A 87.778 360 31 9 2297 2645 459460719 459460362 3.100000e-110 409.0
8 TraesCS7D01G315600 chr7A 79.054 444 72 15 2578 3009 18767908 18767474 5.450000e-73 285.0
9 TraesCS7D01G315600 chr7A 93.671 79 4 1 3015 3093 310602072 310602149 2.100000e-22 117.0
10 TraesCS7D01G315600 chr7A 91.566 83 7 0 201 283 459462353 459462271 7.560000e-22 115.0
11 TraesCS7D01G315600 chr5B 90.769 520 46 2 285 802 680837857 680837338 0.000000e+00 693.0
12 TraesCS7D01G315600 chr5B 93.064 346 24 0 1744 2089 493287855 493287510 1.070000e-139 507.0
13 TraesCS7D01G315600 chr2D 90.440 523 44 5 282 800 575827635 575827115 0.000000e+00 684.0
14 TraesCS7D01G315600 chr2D 95.556 405 18 0 1685 2089 69242635 69243039 0.000000e+00 649.0
15 TraesCS7D01G315600 chr4B 90.057 523 48 4 282 802 9542249 9541729 0.000000e+00 675.0
16 TraesCS7D01G315600 chr4B 80.508 118 19 3 2591 2706 611288637 611288752 1.650000e-13 87.9
17 TraesCS7D01G315600 chr2B 89.866 523 51 2 282 802 72674479 72673957 0.000000e+00 671.0
18 TraesCS7D01G315600 chr2B 92.771 83 2 1 3015 3093 37716882 37716800 2.100000e-22 117.0
19 TraesCS7D01G315600 chr2B 91.566 83 3 1 3015 3093 37716800 37716882 9.780000e-21 111.0
20 TraesCS7D01G315600 chr4A 89.847 522 52 1 282 802 691505438 691505959 0.000000e+00 669.0
21 TraesCS7D01G315600 chr4A 89.866 523 49 4 282 801 733886826 733887347 0.000000e+00 669.0
22 TraesCS7D01G315600 chr3B 89.583 528 48 6 275 798 818160605 818161129 0.000000e+00 664.0
23 TraesCS7D01G315600 chr6B 89.695 524 47 5 284 802 678533489 678532968 0.000000e+00 662.0
24 TraesCS7D01G315600 chr1B 91.908 346 28 0 1744 2089 619097525 619097180 5.000000e-133 484.0
25 TraesCS7D01G315600 chrUn 77.602 442 65 16 2582 2992 354363768 354363330 1.550000e-58 237.0
26 TraesCS7D01G315600 chr5A 79.787 188 28 7 1413 1595 679739429 679739611 9.710000e-26 128.0
27 TraesCS7D01G315600 chr5D 91.954 87 6 1 3011 3096 481255629 481255543 1.630000e-23 121.0
28 TraesCS7D01G315600 chr6D 95.833 72 3 0 3015 3086 451652224 451652153 2.100000e-22 117.0
29 TraesCS7D01G315600 chr6D 94.444 72 4 0 3022 3093 451652153 451652224 9.780000e-21 111.0
30 TraesCS7D01G315600 chr3D 92.308 78 2 1 3016 3093 61038273 61038200 1.270000e-19 108.0
31 TraesCS7D01G315600 chr3D 92.308 78 2 2 3015 3092 61038200 61038273 1.270000e-19 108.0
32 TraesCS7D01G315600 chr3D 75.936 187 38 7 1413 1595 348912662 348912479 4.580000e-14 89.8
33 TraesCS7D01G315600 chr1D 77.473 182 34 6 1413 1592 288540141 288540317 5.890000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G315600 chr7D 401715323 401718658 3335 True 6161.000000 6161 100.000000 1 3336 1 chr7D.!!$R1 3335
1 TraesCS7D01G315600 chr7B 411340820 411343260 2440 True 1806.500000 3217 92.976000 2 2919 2 chr7B.!!$R2 2917
2 TraesCS7D01G315600 chr7B 707963134 707963657 523 True 693.000000 693 90.667000 282 801 1 chr7B.!!$R1 519
3 TraesCS7D01G315600 chr7A 459460362 459462353 1991 True 958.333333 2351 91.550667 201 2645 3 chr7A.!!$R2 2444
4 TraesCS7D01G315600 chr5B 680837338 680837857 519 True 693.000000 693 90.769000 285 802 1 chr5B.!!$R2 517
5 TraesCS7D01G315600 chr2D 575827115 575827635 520 True 684.000000 684 90.440000 282 800 1 chr2D.!!$R1 518
6 TraesCS7D01G315600 chr4B 9541729 9542249 520 True 675.000000 675 90.057000 282 802 1 chr4B.!!$R1 520
7 TraesCS7D01G315600 chr2B 72673957 72674479 522 True 671.000000 671 89.866000 282 802 1 chr2B.!!$R2 520
8 TraesCS7D01G315600 chr4A 691505438 691505959 521 False 669.000000 669 89.847000 282 802 1 chr4A.!!$F1 520
9 TraesCS7D01G315600 chr4A 733886826 733887347 521 False 669.000000 669 89.866000 282 801 1 chr4A.!!$F2 519
10 TraesCS7D01G315600 chr3B 818160605 818161129 524 False 664.000000 664 89.583000 275 798 1 chr3B.!!$F1 523
11 TraesCS7D01G315600 chr6B 678532968 678533489 521 True 662.000000 662 89.695000 284 802 1 chr6B.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 421 0.535335 GGCATCTTAGTCGTGTGGGA 59.465 55.0 0.00 0.0 0.00 4.37 F
1245 1265 0.448990 CGAGTACATCGTCCGGAACA 59.551 55.0 5.23 0.0 46.62 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 1354 0.250209 ATGCACCATGAGATCGAGCC 60.250 55.0 0.0 0.0 0.0 4.70 R
3139 3226 0.108756 GGAACGAGACCCACTGCTAC 60.109 60.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.937696 TCTACACAACATTGCCATAACG 57.062 40.909 0.00 0.00 0.00 3.18
25 26 3.687212 TCTACACAACATTGCCATAACGG 59.313 43.478 0.00 0.00 38.11 4.44
46 47 7.915293 ACGGATAATTTGTTATGTTCTGTGA 57.085 32.000 0.00 0.00 0.00 3.58
48 49 8.612619 ACGGATAATTTGTTATGTTCTGTGATC 58.387 33.333 0.00 0.00 0.00 2.92
70 72 7.560991 TGATCTGTTGATTGCCCTATAATTGTT 59.439 33.333 0.00 0.00 32.19 2.83
218 222 4.079958 ACCCGCTTAAGTATTTTGGGATCT 60.080 41.667 16.51 0.00 38.56 2.75
222 226 4.038042 GCTTAAGTATTTTGGGATCTGGGC 59.962 45.833 4.02 0.00 0.00 5.36
224 228 1.929494 AGTATTTTGGGATCTGGGCCA 59.071 47.619 5.85 5.85 0.00 5.36
234 238 2.758423 GGATCTGGGCCAACGTAAAAAT 59.242 45.455 8.04 0.00 0.00 1.82
361 366 3.340789 GAACGTGTGCTGGGTTCC 58.659 61.111 0.00 0.00 35.24 3.62
399 404 1.072505 GTGGTTTTCTCCTCCGGCA 59.927 57.895 0.00 0.00 0.00 5.69
415 421 0.535335 GGCATCTTAGTCGTGTGGGA 59.465 55.000 0.00 0.00 0.00 4.37
419 425 3.861840 CATCTTAGTCGTGTGGGAATGT 58.138 45.455 0.00 0.00 0.00 2.71
420 426 4.253685 CATCTTAGTCGTGTGGGAATGTT 58.746 43.478 0.00 0.00 0.00 2.71
428 434 3.767131 TCGTGTGGGAATGTTAGATCTGA 59.233 43.478 5.18 0.00 0.00 3.27
464 470 1.844289 AGGTTGTTGCCCCGGTCTA 60.844 57.895 0.00 0.00 0.00 2.59
474 480 1.648504 CCCCGGTCTAATTCGTTCAC 58.351 55.000 0.00 0.00 0.00 3.18
692 703 7.378181 ACTTCTTGATTGTTGTTCTTTTGTGT 58.622 30.769 0.00 0.00 0.00 3.72
725 737 5.389411 GCGTTTTGCTGTCTTTTCAGTTTTT 60.389 36.000 0.00 0.00 41.73 1.94
755 767 3.676646 GGTTTGTACGTGGCTTGTACTAG 59.323 47.826 16.75 0.00 42.09 2.57
875 888 5.336690 CCTGTTTTTGGGTTCATCCATGTAG 60.337 44.000 0.00 0.00 36.58 2.74
1024 1044 2.813042 GTGCTCAGCGCTCACTCC 60.813 66.667 17.76 2.44 40.11 3.85
1049 1069 6.516718 TCTTCTTCTTCTTCTTGTACCTGTG 58.483 40.000 0.00 0.00 0.00 3.66
1076 1096 6.249035 GATCACTCGAGAATAGTCCTTAGG 57.751 45.833 21.68 0.00 0.00 2.69
1084 1104 7.344913 TCGAGAATAGTCCTTAGGAAGTTAGT 58.655 38.462 0.98 0.00 31.38 2.24
1245 1265 0.448990 CGAGTACATCGTCCGGAACA 59.551 55.000 5.23 0.00 46.62 3.18
1251 1271 1.141019 ATCGTCCGGAACATCGTGG 59.859 57.895 5.23 0.00 0.00 4.94
1334 1354 1.133598 TGCTTCGTCCAGGTACGTATG 59.866 52.381 0.00 0.00 43.31 2.39
1445 1465 3.062466 CCGTGCTCCTGGACTCGA 61.062 66.667 16.59 0.00 32.02 4.04
1573 1593 4.457496 ACCTGCGCCGACATCCTG 62.457 66.667 4.18 0.00 0.00 3.86
1747 1767 2.280592 ACCCACGGCTTCAACGTC 60.281 61.111 0.00 0.00 43.58 4.34
2225 2245 3.063452 TCAAATTAGCTCGACGGAAATGC 59.937 43.478 0.00 0.00 0.00 3.56
2262 2282 6.590292 CAGGAACACAGTAATAAGGTACAGTG 59.410 42.308 6.40 6.40 43.42 3.66
2291 2311 2.365408 TTGTCGTGTGTGTGTGTGTA 57.635 45.000 0.00 0.00 0.00 2.90
2292 2312 2.365408 TGTCGTGTGTGTGTGTGTAA 57.635 45.000 0.00 0.00 0.00 2.41
2293 2313 1.994074 TGTCGTGTGTGTGTGTGTAAC 59.006 47.619 0.00 0.00 37.35 2.50
2318 2391 1.400494 ACTTGTGAAGGTGTTGCGTTC 59.600 47.619 0.00 0.00 41.06 3.95
2502 2579 5.744171 ACTCACATATGCAACCATGAGTTA 58.256 37.500 16.84 0.00 36.18 2.24
2513 2590 4.724279 ACCATGAGTTAGGGTCAACTTT 57.276 40.909 0.00 0.00 39.89 2.66
2580 2666 1.986378 AGAAAATCTCGTCGCACTTCG 59.014 47.619 0.00 0.00 40.15 3.79
2602 2688 1.463674 ACGATGTTTGGAGGGATTGC 58.536 50.000 0.00 0.00 0.00 3.56
2611 2697 5.170748 GTTTGGAGGGATTGCTACAAAATG 58.829 41.667 0.00 0.00 30.73 2.32
2687 2773 7.675962 TTTAGCTAAACTATCGGCTTCAAAA 57.324 32.000 14.96 0.00 36.40 2.44
2742 2828 4.617253 TCTTCGGAACCATTCTTTCTGA 57.383 40.909 0.00 0.00 36.72 3.27
2757 2843 7.969536 TTCTTTCTGACATTCAACTCCTTAG 57.030 36.000 0.00 0.00 0.00 2.18
2768 2854 0.679505 ACTCCTTAGTCGCAGTTGCA 59.320 50.000 4.84 0.00 42.21 4.08
2770 2856 2.496070 ACTCCTTAGTCGCAGTTGCATA 59.504 45.455 4.84 0.00 42.21 3.14
2806 2892 7.201644 CGAGTTGGCTTCAATGTATAACTGAAT 60.202 37.037 0.00 0.00 32.47 2.57
2809 2895 7.701539 TGGCTTCAATGTATAACTGAATTGT 57.298 32.000 0.00 0.00 32.92 2.71
2847 2933 0.539986 ACGTGGGTCGCCATTAGATT 59.460 50.000 0.00 0.00 44.19 2.40
2872 2959 1.710013 CTAAAGCTTGAGGTTCGCGA 58.290 50.000 3.71 3.71 34.26 5.87
2909 2996 1.461127 GAACTGCAACATCGGTGACTC 59.539 52.381 0.65 0.00 0.00 3.36
2916 3003 2.674852 CAACATCGGTGACTCCATTGAG 59.325 50.000 0.65 0.00 44.62 3.02
2917 3004 2.179427 ACATCGGTGACTCCATTGAGA 58.821 47.619 0.65 0.00 41.42 3.27
2918 3005 2.093973 ACATCGGTGACTCCATTGAGAC 60.094 50.000 0.65 0.00 41.42 3.36
2919 3006 1.924731 TCGGTGACTCCATTGAGACT 58.075 50.000 0.00 0.00 41.42 3.24
2920 3007 1.546029 TCGGTGACTCCATTGAGACTG 59.454 52.381 0.00 0.00 41.42 3.51
2921 3008 1.546029 CGGTGACTCCATTGAGACTGA 59.454 52.381 0.00 0.00 41.42 3.41
2922 3009 2.167281 CGGTGACTCCATTGAGACTGAT 59.833 50.000 0.00 0.00 41.42 2.90
2923 3010 3.381590 CGGTGACTCCATTGAGACTGATA 59.618 47.826 0.00 0.00 41.42 2.15
2924 3011 4.142160 CGGTGACTCCATTGAGACTGATAA 60.142 45.833 0.00 0.00 41.42 1.75
2925 3012 5.624509 CGGTGACTCCATTGAGACTGATAAA 60.625 44.000 0.00 0.00 41.42 1.40
2926 3013 6.173339 GGTGACTCCATTGAGACTGATAAAA 58.827 40.000 0.00 0.00 41.42 1.52
2927 3014 6.655003 GGTGACTCCATTGAGACTGATAAAAA 59.345 38.462 0.00 0.00 41.42 1.94
2928 3015 7.337942 GGTGACTCCATTGAGACTGATAAAAAT 59.662 37.037 0.00 0.00 41.42 1.82
2929 3016 8.180267 GTGACTCCATTGAGACTGATAAAAATG 58.820 37.037 0.00 0.00 41.42 2.32
2930 3017 8.102676 TGACTCCATTGAGACTGATAAAAATGA 58.897 33.333 0.00 0.00 41.42 2.57
2931 3018 8.273780 ACTCCATTGAGACTGATAAAAATGAC 57.726 34.615 0.00 0.00 41.42 3.06
2932 3019 7.337942 ACTCCATTGAGACTGATAAAAATGACC 59.662 37.037 0.00 0.00 41.42 4.02
2933 3020 6.603201 TCCATTGAGACTGATAAAAATGACCC 59.397 38.462 0.00 0.00 0.00 4.46
2934 3021 6.183360 CCATTGAGACTGATAAAAATGACCCC 60.183 42.308 0.00 0.00 0.00 4.95
2935 3022 5.512942 TGAGACTGATAAAAATGACCCCA 57.487 39.130 0.00 0.00 0.00 4.96
2936 3023 5.500234 TGAGACTGATAAAAATGACCCCAG 58.500 41.667 0.00 0.00 0.00 4.45
2937 3024 5.250543 TGAGACTGATAAAAATGACCCCAGA 59.749 40.000 0.00 0.00 0.00 3.86
2938 3025 6.069440 TGAGACTGATAAAAATGACCCCAGAT 60.069 38.462 0.00 0.00 0.00 2.90
2939 3026 7.127186 TGAGACTGATAAAAATGACCCCAGATA 59.873 37.037 0.00 0.00 0.00 1.98
2940 3027 7.512992 AGACTGATAAAAATGACCCCAGATAG 58.487 38.462 0.00 0.00 0.00 2.08
2941 3028 7.127955 AGACTGATAAAAATGACCCCAGATAGT 59.872 37.037 0.00 0.00 0.00 2.12
2942 3029 7.643123 ACTGATAAAAATGACCCCAGATAGTT 58.357 34.615 0.00 0.00 0.00 2.24
2943 3030 8.116026 ACTGATAAAAATGACCCCAGATAGTTT 58.884 33.333 0.00 0.00 0.00 2.66
2944 3031 8.519799 TGATAAAAATGACCCCAGATAGTTTC 57.480 34.615 0.00 0.00 0.00 2.78
2945 3032 7.559897 TGATAAAAATGACCCCAGATAGTTTCC 59.440 37.037 0.00 0.00 0.00 3.13
2946 3033 4.946160 AAATGACCCCAGATAGTTTCCA 57.054 40.909 0.00 0.00 0.00 3.53
2947 3034 5.472301 AAATGACCCCAGATAGTTTCCAT 57.528 39.130 0.00 0.00 0.00 3.41
2948 3035 4.713792 ATGACCCCAGATAGTTTCCATC 57.286 45.455 0.00 0.00 0.00 3.51
2949 3036 2.434336 TGACCCCAGATAGTTTCCATCG 59.566 50.000 0.00 0.00 0.00 3.84
2950 3037 2.434702 GACCCCAGATAGTTTCCATCGT 59.565 50.000 0.00 0.00 0.00 3.73
2951 3038 2.170607 ACCCCAGATAGTTTCCATCGTG 59.829 50.000 0.00 0.00 0.00 4.35
2952 3039 2.434336 CCCCAGATAGTTTCCATCGTGA 59.566 50.000 0.00 0.00 0.00 4.35
2953 3040 3.071602 CCCCAGATAGTTTCCATCGTGAT 59.928 47.826 0.00 0.00 0.00 3.06
2954 3041 4.310769 CCCAGATAGTTTCCATCGTGATC 58.689 47.826 0.00 0.00 0.00 2.92
2955 3042 4.202253 CCCAGATAGTTTCCATCGTGATCA 60.202 45.833 0.00 0.00 0.00 2.92
2956 3043 4.747108 CCAGATAGTTTCCATCGTGATCAC 59.253 45.833 16.21 16.21 0.00 3.06
2987 3074 4.933064 CGCCGCTCCTCGTCCATC 62.933 72.222 0.00 0.00 36.19 3.51
2988 3075 4.933064 GCCGCTCCTCGTCCATCG 62.933 72.222 0.00 0.00 41.41 3.84
2989 3076 3.518998 CCGCTCCTCGTCCATCGT 61.519 66.667 0.00 0.00 40.80 3.73
2990 3077 2.278206 CGCTCCTCGTCCATCGTG 60.278 66.667 0.00 0.00 40.80 4.35
2991 3078 2.583593 GCTCCTCGTCCATCGTGC 60.584 66.667 0.00 0.00 40.80 5.34
2992 3079 2.105128 CTCCTCGTCCATCGTGCC 59.895 66.667 0.00 0.00 40.80 5.01
2993 3080 2.362503 TCCTCGTCCATCGTGCCT 60.363 61.111 0.00 0.00 40.80 4.75
2994 3081 1.077285 TCCTCGTCCATCGTGCCTA 60.077 57.895 0.00 0.00 40.80 3.93
2995 3082 1.101635 TCCTCGTCCATCGTGCCTAG 61.102 60.000 0.00 0.00 40.80 3.02
2996 3083 1.384989 CCTCGTCCATCGTGCCTAGT 61.385 60.000 0.00 0.00 40.80 2.57
2997 3084 1.306148 CTCGTCCATCGTGCCTAGTA 58.694 55.000 0.00 0.00 40.80 1.82
2998 3085 1.264557 CTCGTCCATCGTGCCTAGTAG 59.735 57.143 0.00 0.00 40.80 2.57
2999 3086 1.134310 TCGTCCATCGTGCCTAGTAGA 60.134 52.381 0.00 0.00 40.80 2.59
3000 3087 1.880675 CGTCCATCGTGCCTAGTAGAT 59.119 52.381 0.00 0.00 34.52 1.98
3001 3088 2.350868 CGTCCATCGTGCCTAGTAGATG 60.351 54.545 0.00 6.87 39.92 2.90
3002 3089 1.613925 TCCATCGTGCCTAGTAGATGC 59.386 52.381 0.00 0.00 39.16 3.91
3003 3090 1.341209 CCATCGTGCCTAGTAGATGCA 59.659 52.381 0.00 0.00 39.16 3.96
3019 3106 2.988010 TGCACCATCTGATGTACTCC 57.012 50.000 15.95 1.53 0.00 3.85
3020 3107 1.486310 TGCACCATCTGATGTACTCCC 59.514 52.381 15.95 0.30 0.00 4.30
3021 3108 1.765314 GCACCATCTGATGTACTCCCT 59.235 52.381 15.95 0.00 0.00 4.20
3022 3109 2.224161 GCACCATCTGATGTACTCCCTC 60.224 54.545 15.95 0.00 0.00 4.30
3023 3110 2.366916 CACCATCTGATGTACTCCCTCC 59.633 54.545 15.95 0.00 0.00 4.30
3024 3111 1.615883 CCATCTGATGTACTCCCTCCG 59.384 57.143 15.95 0.00 0.00 4.63
3025 3112 2.311463 CATCTGATGTACTCCCTCCGT 58.689 52.381 9.50 0.00 0.00 4.69
3026 3113 2.526888 TCTGATGTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
3027 3114 2.816411 TCTGATGTACTCCCTCCGTTT 58.184 47.619 0.00 0.00 0.00 3.60
3028 3115 3.170717 TCTGATGTACTCCCTCCGTTTT 58.829 45.455 0.00 0.00 0.00 2.43
3029 3116 4.346730 TCTGATGTACTCCCTCCGTTTTA 58.653 43.478 0.00 0.00 0.00 1.52
3030 3117 4.960469 TCTGATGTACTCCCTCCGTTTTAT 59.040 41.667 0.00 0.00 0.00 1.40
3031 3118 6.131264 TCTGATGTACTCCCTCCGTTTTATA 58.869 40.000 0.00 0.00 0.00 0.98
3032 3119 6.781014 TCTGATGTACTCCCTCCGTTTTATAT 59.219 38.462 0.00 0.00 0.00 0.86
3033 3120 7.289317 TCTGATGTACTCCCTCCGTTTTATATT 59.711 37.037 0.00 0.00 0.00 1.28
3034 3121 8.481492 TGATGTACTCCCTCCGTTTTATATTA 57.519 34.615 0.00 0.00 0.00 0.98
3035 3122 8.362639 TGATGTACTCCCTCCGTTTTATATTAC 58.637 37.037 0.00 0.00 0.00 1.89
3036 3123 7.902920 TGTACTCCCTCCGTTTTATATTACT 57.097 36.000 0.00 0.00 0.00 2.24
3037 3124 8.310122 TGTACTCCCTCCGTTTTATATTACTT 57.690 34.615 0.00 0.00 0.00 2.24
3038 3125 8.199449 TGTACTCCCTCCGTTTTATATTACTTG 58.801 37.037 0.00 0.00 0.00 3.16
3039 3126 7.191593 ACTCCCTCCGTTTTATATTACTTGT 57.808 36.000 0.00 0.00 0.00 3.16
3040 3127 7.270779 ACTCCCTCCGTTTTATATTACTTGTC 58.729 38.462 0.00 0.00 0.00 3.18
3041 3128 6.275335 TCCCTCCGTTTTATATTACTTGTCG 58.725 40.000 0.00 0.00 0.00 4.35
3042 3129 5.050567 CCCTCCGTTTTATATTACTTGTCGC 60.051 44.000 0.00 0.00 0.00 5.19
3043 3130 5.751990 CCTCCGTTTTATATTACTTGTCGCT 59.248 40.000 0.00 0.00 0.00 4.93
3044 3131 6.292168 CCTCCGTTTTATATTACTTGTCGCTG 60.292 42.308 0.00 0.00 0.00 5.18
3045 3132 6.331845 TCCGTTTTATATTACTTGTCGCTGA 58.668 36.000 0.00 0.00 0.00 4.26
3046 3133 6.982141 TCCGTTTTATATTACTTGTCGCTGAT 59.018 34.615 0.00 0.00 0.00 2.90
3047 3134 7.493320 TCCGTTTTATATTACTTGTCGCTGATT 59.507 33.333 0.00 0.00 0.00 2.57
3048 3135 8.120465 CCGTTTTATATTACTTGTCGCTGATTT 58.880 33.333 0.00 0.00 0.00 2.17
3056 3143 8.853469 ATTACTTGTCGCTGATTTAGTAGTAC 57.147 34.615 0.00 0.00 0.00 2.73
3057 3144 6.512342 ACTTGTCGCTGATTTAGTAGTACT 57.488 37.500 8.14 8.14 0.00 2.73
3058 3145 7.621428 ACTTGTCGCTGATTTAGTAGTACTA 57.379 36.000 5.90 5.90 0.00 1.82
3059 3146 8.048534 ACTTGTCGCTGATTTAGTAGTACTAA 57.951 34.615 17.12 17.12 38.79 2.24
3071 3158 8.906636 TTTAGTAGTACTAAATCAGCGACAAG 57.093 34.615 25.10 0.00 43.48 3.16
3072 3159 6.512342 AGTAGTACTAAATCAGCGACAAGT 57.488 37.500 3.61 0.00 0.00 3.16
3073 3160 7.621428 AGTAGTACTAAATCAGCGACAAGTA 57.379 36.000 3.61 0.00 0.00 2.24
3074 3161 8.048534 AGTAGTACTAAATCAGCGACAAGTAA 57.951 34.615 3.61 0.00 0.00 2.24
3075 3162 8.684520 AGTAGTACTAAATCAGCGACAAGTAAT 58.315 33.333 3.61 0.00 0.00 1.89
3076 3163 9.941664 GTAGTACTAAATCAGCGACAAGTAATA 57.058 33.333 3.61 0.00 0.00 0.98
3078 3165 9.464714 AGTACTAAATCAGCGACAAGTAATATG 57.535 33.333 0.00 0.00 0.00 1.78
3079 3166 7.715265 ACTAAATCAGCGACAAGTAATATGG 57.285 36.000 0.00 0.00 0.00 2.74
3080 3167 7.497595 ACTAAATCAGCGACAAGTAATATGGA 58.502 34.615 0.00 0.00 0.00 3.41
3081 3168 7.985184 ACTAAATCAGCGACAAGTAATATGGAA 59.015 33.333 0.00 0.00 0.00 3.53
3082 3169 6.604735 AATCAGCGACAAGTAATATGGAAC 57.395 37.500 0.00 0.00 0.00 3.62
3083 3170 4.109766 TCAGCGACAAGTAATATGGAACG 58.890 43.478 0.00 0.00 0.00 3.95
3084 3171 3.245284 CAGCGACAAGTAATATGGAACGG 59.755 47.826 0.00 0.00 0.00 4.44
3085 3172 3.131577 AGCGACAAGTAATATGGAACGGA 59.868 43.478 0.00 0.00 0.00 4.69
3086 3173 3.489785 GCGACAAGTAATATGGAACGGAG 59.510 47.826 0.00 0.00 0.00 4.63
3087 3174 4.049186 CGACAAGTAATATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
3088 3175 4.377897 GACAAGTAATATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
3089 3176 4.035112 ACAAGTAATATGGAACGGAGGGA 58.965 43.478 0.00 0.00 0.00 4.20
3090 3177 4.101119 ACAAGTAATATGGAACGGAGGGAG 59.899 45.833 0.00 0.00 0.00 4.30
3091 3178 3.924922 AGTAATATGGAACGGAGGGAGT 58.075 45.455 0.00 0.00 0.00 3.85
3092 3179 5.070823 AGTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
3093 3180 5.461327 AGTAATATGGAACGGAGGGAGTAA 58.539 41.667 0.00 0.00 0.00 2.24
3094 3181 6.082707 AGTAATATGGAACGGAGGGAGTAAT 58.917 40.000 0.00 0.00 0.00 1.89
3095 3182 5.906772 AATATGGAACGGAGGGAGTAATT 57.093 39.130 0.00 0.00 0.00 1.40
3096 3183 3.840124 ATGGAACGGAGGGAGTAATTC 57.160 47.619 0.00 0.00 0.00 2.17
3097 3184 2.829023 TGGAACGGAGGGAGTAATTCT 58.171 47.619 0.00 0.00 0.00 2.40
3098 3185 2.500098 TGGAACGGAGGGAGTAATTCTG 59.500 50.000 0.00 0.00 0.00 3.02
3099 3186 2.764572 GGAACGGAGGGAGTAATTCTGA 59.235 50.000 0.00 0.00 0.00 3.27
3100 3187 3.181474 GGAACGGAGGGAGTAATTCTGAG 60.181 52.174 0.00 0.00 0.00 3.35
3101 3188 2.389715 ACGGAGGGAGTAATTCTGAGG 58.610 52.381 0.00 0.00 0.00 3.86
3102 3189 2.292323 ACGGAGGGAGTAATTCTGAGGT 60.292 50.000 0.00 0.00 0.00 3.85
3103 3190 2.101582 CGGAGGGAGTAATTCTGAGGTG 59.898 54.545 0.00 0.00 0.00 4.00
3104 3191 2.436173 GGAGGGAGTAATTCTGAGGTGG 59.564 54.545 0.00 0.00 0.00 4.61
3105 3192 2.436173 GAGGGAGTAATTCTGAGGTGGG 59.564 54.545 0.00 0.00 0.00 4.61
3106 3193 1.490910 GGGAGTAATTCTGAGGTGGGG 59.509 57.143 0.00 0.00 0.00 4.96
3107 3194 1.490910 GGAGTAATTCTGAGGTGGGGG 59.509 57.143 0.00 0.00 0.00 5.40
3108 3195 2.478292 GAGTAATTCTGAGGTGGGGGA 58.522 52.381 0.00 0.00 0.00 4.81
3109 3196 2.436173 GAGTAATTCTGAGGTGGGGGAG 59.564 54.545 0.00 0.00 0.00 4.30
3110 3197 2.045885 AGTAATTCTGAGGTGGGGGAGA 59.954 50.000 0.00 0.00 0.00 3.71
3111 3198 1.290134 AATTCTGAGGTGGGGGAGAC 58.710 55.000 0.00 0.00 0.00 3.36
3124 3211 2.171635 GGAGACCATGTCAAACGCC 58.828 57.895 0.00 0.00 34.60 5.68
3125 3212 0.321653 GGAGACCATGTCAAACGCCT 60.322 55.000 0.00 0.00 34.60 5.52
3126 3213 1.066430 GGAGACCATGTCAAACGCCTA 60.066 52.381 0.00 0.00 34.60 3.93
3127 3214 2.271800 GAGACCATGTCAAACGCCTAG 58.728 52.381 0.00 0.00 34.60 3.02
3128 3215 1.899814 AGACCATGTCAAACGCCTAGA 59.100 47.619 0.00 0.00 34.60 2.43
3129 3216 2.501723 AGACCATGTCAAACGCCTAGAT 59.498 45.455 0.00 0.00 34.60 1.98
3130 3217 3.055094 AGACCATGTCAAACGCCTAGATT 60.055 43.478 0.00 0.00 34.60 2.40
3131 3218 3.686016 ACCATGTCAAACGCCTAGATTT 58.314 40.909 0.00 0.00 0.00 2.17
3132 3219 4.839121 ACCATGTCAAACGCCTAGATTTA 58.161 39.130 0.00 0.00 0.00 1.40
3133 3220 4.876107 ACCATGTCAAACGCCTAGATTTAG 59.124 41.667 0.00 0.00 0.00 1.85
3134 3221 7.886282 GACCATGTCAAACGCCTAGATTTAGG 61.886 46.154 4.90 4.90 39.84 2.69
3135 3222 4.546829 TGTCAAACGCCTAGATTTAGGT 57.453 40.909 10.83 0.00 46.96 3.08
3136 3223 4.901868 TGTCAAACGCCTAGATTTAGGTT 58.098 39.130 10.83 0.00 46.96 3.50
3137 3224 5.310451 TGTCAAACGCCTAGATTTAGGTTT 58.690 37.500 10.83 2.27 46.96 3.27
3138 3225 6.465948 TGTCAAACGCCTAGATTTAGGTTTA 58.534 36.000 10.83 0.00 46.96 2.01
3139 3226 6.592607 TGTCAAACGCCTAGATTTAGGTTTAG 59.407 38.462 10.83 3.65 46.96 1.85
3140 3227 6.592994 GTCAAACGCCTAGATTTAGGTTTAGT 59.407 38.462 10.83 4.19 46.96 2.24
3141 3228 7.761249 GTCAAACGCCTAGATTTAGGTTTAGTA 59.239 37.037 10.83 0.00 46.96 1.82
3142 3229 7.977853 TCAAACGCCTAGATTTAGGTTTAGTAG 59.022 37.037 10.83 4.30 46.96 2.57
3143 3230 5.840715 ACGCCTAGATTTAGGTTTAGTAGC 58.159 41.667 10.83 0.00 46.96 3.58
3144 3231 5.361857 ACGCCTAGATTTAGGTTTAGTAGCA 59.638 40.000 10.83 0.00 46.96 3.49
3145 3232 5.921408 CGCCTAGATTTAGGTTTAGTAGCAG 59.079 44.000 10.83 0.00 46.96 4.24
3146 3233 6.461231 CGCCTAGATTTAGGTTTAGTAGCAGT 60.461 42.308 10.83 0.00 46.96 4.40
3147 3234 6.702282 GCCTAGATTTAGGTTTAGTAGCAGTG 59.298 42.308 10.83 0.00 46.96 3.66
3148 3235 7.210873 CCTAGATTTAGGTTTAGTAGCAGTGG 58.789 42.308 0.95 0.00 41.42 4.00
3149 3236 5.990668 AGATTTAGGTTTAGTAGCAGTGGG 58.009 41.667 0.00 0.00 0.00 4.61
3150 3237 5.487845 AGATTTAGGTTTAGTAGCAGTGGGT 59.512 40.000 0.00 0.00 0.00 4.51
3151 3238 4.813750 TTAGGTTTAGTAGCAGTGGGTC 57.186 45.455 0.00 0.00 0.00 4.46
3152 3239 2.903926 AGGTTTAGTAGCAGTGGGTCT 58.096 47.619 0.00 0.00 0.00 3.85
3153 3240 2.832733 AGGTTTAGTAGCAGTGGGTCTC 59.167 50.000 0.00 0.00 0.00 3.36
3154 3241 2.416972 GGTTTAGTAGCAGTGGGTCTCG 60.417 54.545 0.00 0.00 0.00 4.04
3155 3242 2.211250 TTAGTAGCAGTGGGTCTCGT 57.789 50.000 0.00 0.00 0.00 4.18
3156 3243 2.211250 TAGTAGCAGTGGGTCTCGTT 57.789 50.000 0.00 0.00 0.00 3.85
3157 3244 0.889306 AGTAGCAGTGGGTCTCGTTC 59.111 55.000 0.00 0.00 0.00 3.95
3158 3245 0.108756 GTAGCAGTGGGTCTCGTTCC 60.109 60.000 0.00 0.00 0.00 3.62
3159 3246 1.255667 TAGCAGTGGGTCTCGTTCCC 61.256 60.000 0.00 5.62 44.81 3.97
3160 3247 2.584391 GCAGTGGGTCTCGTTCCCT 61.584 63.158 11.91 0.00 44.84 4.20
3161 3248 2.058675 CAGTGGGTCTCGTTCCCTT 58.941 57.895 11.91 1.08 44.84 3.95
3162 3249 0.037232 CAGTGGGTCTCGTTCCCTTC 60.037 60.000 11.91 6.82 44.84 3.46
3163 3250 0.178929 AGTGGGTCTCGTTCCCTTCT 60.179 55.000 11.91 8.40 44.84 2.85
3164 3251 0.685660 GTGGGTCTCGTTCCCTTCTT 59.314 55.000 11.91 0.00 44.84 2.52
3165 3252 1.071857 GTGGGTCTCGTTCCCTTCTTT 59.928 52.381 11.91 0.00 44.84 2.52
3166 3253 1.071699 TGGGTCTCGTTCCCTTCTTTG 59.928 52.381 11.91 0.00 44.84 2.77
3167 3254 1.610886 GGGTCTCGTTCCCTTCTTTGG 60.611 57.143 5.38 0.00 41.58 3.28
3168 3255 1.346722 GGTCTCGTTCCCTTCTTTGGA 59.653 52.381 0.00 0.00 0.00 3.53
3169 3256 2.224450 GGTCTCGTTCCCTTCTTTGGAA 60.224 50.000 0.00 0.00 39.54 3.53
3170 3257 3.559384 GGTCTCGTTCCCTTCTTTGGAAT 60.559 47.826 0.00 0.00 43.44 3.01
3171 3258 4.072839 GTCTCGTTCCCTTCTTTGGAATT 58.927 43.478 0.00 0.00 43.44 2.17
3172 3259 4.519350 GTCTCGTTCCCTTCTTTGGAATTT 59.481 41.667 0.00 0.00 43.44 1.82
3173 3260 4.518970 TCTCGTTCCCTTCTTTGGAATTTG 59.481 41.667 0.00 0.00 43.44 2.32
3174 3261 4.465886 TCGTTCCCTTCTTTGGAATTTGA 58.534 39.130 0.00 0.00 43.44 2.69
3175 3262 4.518970 TCGTTCCCTTCTTTGGAATTTGAG 59.481 41.667 0.00 0.00 43.44 3.02
3176 3263 4.560128 GTTCCCTTCTTTGGAATTTGAGC 58.440 43.478 0.00 0.00 43.44 4.26
3177 3264 2.819608 TCCCTTCTTTGGAATTTGAGCG 59.180 45.455 0.00 0.00 0.00 5.03
3178 3265 2.819608 CCCTTCTTTGGAATTTGAGCGA 59.180 45.455 0.00 0.00 0.00 4.93
3179 3266 3.445096 CCCTTCTTTGGAATTTGAGCGAT 59.555 43.478 0.00 0.00 0.00 4.58
3180 3267 4.439289 CCCTTCTTTGGAATTTGAGCGATC 60.439 45.833 0.00 0.00 0.00 3.69
3181 3268 4.156556 CCTTCTTTGGAATTTGAGCGATCA 59.843 41.667 0.00 0.00 0.00 2.92
3182 3269 4.685169 TCTTTGGAATTTGAGCGATCAC 57.315 40.909 1.08 0.00 0.00 3.06
3183 3270 4.326826 TCTTTGGAATTTGAGCGATCACT 58.673 39.130 1.08 0.00 0.00 3.41
3184 3271 4.761739 TCTTTGGAATTTGAGCGATCACTT 59.238 37.500 1.08 0.00 0.00 3.16
3185 3272 5.241506 TCTTTGGAATTTGAGCGATCACTTT 59.758 36.000 1.08 0.00 0.00 2.66
3186 3273 5.452078 TTGGAATTTGAGCGATCACTTTT 57.548 34.783 1.08 0.00 0.00 2.27
3187 3274 6.567687 TTGGAATTTGAGCGATCACTTTTA 57.432 33.333 1.08 0.00 0.00 1.52
3188 3275 6.757897 TGGAATTTGAGCGATCACTTTTAT 57.242 33.333 1.08 0.00 0.00 1.40
3189 3276 6.785191 TGGAATTTGAGCGATCACTTTTATC 58.215 36.000 1.08 0.00 0.00 1.75
3190 3277 6.599244 TGGAATTTGAGCGATCACTTTTATCT 59.401 34.615 1.08 0.00 0.00 1.98
3191 3278 7.121168 TGGAATTTGAGCGATCACTTTTATCTT 59.879 33.333 1.08 0.00 0.00 2.40
3192 3279 8.612619 GGAATTTGAGCGATCACTTTTATCTTA 58.387 33.333 1.08 0.00 0.00 2.10
3193 3280 9.643652 GAATTTGAGCGATCACTTTTATCTTAG 57.356 33.333 1.08 0.00 0.00 2.18
3194 3281 6.589830 TTGAGCGATCACTTTTATCTTAGC 57.410 37.500 1.08 0.00 0.00 3.09
3195 3282 5.907207 TGAGCGATCACTTTTATCTTAGCT 58.093 37.500 0.00 0.00 0.00 3.32
3196 3283 7.039313 TGAGCGATCACTTTTATCTTAGCTA 57.961 36.000 0.00 0.00 0.00 3.32
3197 3284 7.489160 TGAGCGATCACTTTTATCTTAGCTAA 58.511 34.615 0.00 5.94 0.00 3.09
3198 3285 8.144478 TGAGCGATCACTTTTATCTTAGCTAAT 58.856 33.333 6.64 0.00 0.00 1.73
3199 3286 8.894768 AGCGATCACTTTTATCTTAGCTAATT 57.105 30.769 6.64 0.50 0.00 1.40
3200 3287 9.331282 AGCGATCACTTTTATCTTAGCTAATTT 57.669 29.630 6.64 0.13 0.00 1.82
3201 3288 9.374960 GCGATCACTTTTATCTTAGCTAATTTG 57.625 33.333 6.64 0.00 0.00 2.32
3207 3294 9.626045 ACTTTTATCTTAGCTAATTTGTGTTGC 57.374 29.630 6.64 0.00 0.00 4.17
3208 3295 8.980143 TTTTATCTTAGCTAATTTGTGTTGCC 57.020 30.769 6.64 0.00 0.00 4.52
3209 3296 7.938140 TTATCTTAGCTAATTTGTGTTGCCT 57.062 32.000 6.64 0.00 0.00 4.75
3210 3297 5.880054 TCTTAGCTAATTTGTGTTGCCTC 57.120 39.130 6.64 0.00 0.00 4.70
3211 3298 5.312895 TCTTAGCTAATTTGTGTTGCCTCA 58.687 37.500 6.64 0.00 0.00 3.86
3212 3299 5.767665 TCTTAGCTAATTTGTGTTGCCTCAA 59.232 36.000 6.64 0.00 0.00 3.02
3213 3300 4.510038 AGCTAATTTGTGTTGCCTCAAG 57.490 40.909 0.00 0.00 0.00 3.02
3214 3301 3.256631 AGCTAATTTGTGTTGCCTCAAGG 59.743 43.478 0.00 0.00 38.53 3.61
3215 3302 3.005791 GCTAATTTGTGTTGCCTCAAGGT 59.994 43.478 0.00 0.00 37.57 3.50
3216 3303 4.501400 GCTAATTTGTGTTGCCTCAAGGTT 60.501 41.667 0.00 0.00 37.57 3.50
3217 3304 3.733443 ATTTGTGTTGCCTCAAGGTTC 57.267 42.857 0.00 0.00 37.57 3.62
3218 3305 1.021202 TTGTGTTGCCTCAAGGTTCG 58.979 50.000 0.00 0.00 37.57 3.95
3219 3306 0.179234 TGTGTTGCCTCAAGGTTCGA 59.821 50.000 0.00 0.00 37.57 3.71
3220 3307 1.202758 TGTGTTGCCTCAAGGTTCGAT 60.203 47.619 0.00 0.00 37.57 3.59
3221 3308 1.197721 GTGTTGCCTCAAGGTTCGATG 59.802 52.381 0.00 0.00 37.57 3.84
3222 3309 0.169009 GTTGCCTCAAGGTTCGATGC 59.831 55.000 0.00 0.00 37.57 3.91
3223 3310 0.250684 TTGCCTCAAGGTTCGATGCA 60.251 50.000 0.00 0.00 37.57 3.96
3224 3311 0.035152 TGCCTCAAGGTTCGATGCAT 60.035 50.000 0.00 0.00 37.57 3.96
3225 3312 0.659957 GCCTCAAGGTTCGATGCATC 59.340 55.000 17.10 17.10 37.57 3.91
3226 3313 2.013563 GCCTCAAGGTTCGATGCATCA 61.014 52.381 25.70 10.72 37.57 3.07
3227 3314 1.667724 CCTCAAGGTTCGATGCATCAC 59.332 52.381 25.70 16.73 0.00 3.06
3228 3315 2.625737 CTCAAGGTTCGATGCATCACT 58.374 47.619 25.70 14.52 0.00 3.41
3229 3316 3.005554 CTCAAGGTTCGATGCATCACTT 58.994 45.455 25.70 18.91 0.00 3.16
3230 3317 3.411446 TCAAGGTTCGATGCATCACTTT 58.589 40.909 25.70 16.31 0.00 2.66
3231 3318 3.820467 TCAAGGTTCGATGCATCACTTTT 59.180 39.130 25.70 12.65 0.00 2.27
3232 3319 4.278170 TCAAGGTTCGATGCATCACTTTTT 59.722 37.500 25.70 11.39 0.00 1.94
3263 3350 5.682234 TGAATGCATCACTCCTTAAGAGA 57.318 39.130 3.36 0.00 46.25 3.10
3264 3351 5.423015 TGAATGCATCACTCCTTAAGAGAC 58.577 41.667 3.36 0.00 46.25 3.36
3265 3352 3.895232 TGCATCACTCCTTAAGAGACC 57.105 47.619 3.36 0.00 46.50 3.85
3266 3353 3.445008 TGCATCACTCCTTAAGAGACCT 58.555 45.455 3.36 0.00 46.50 3.85
3267 3354 3.449018 TGCATCACTCCTTAAGAGACCTC 59.551 47.826 3.36 0.00 46.50 3.85
3268 3355 3.181470 GCATCACTCCTTAAGAGACCTCC 60.181 52.174 3.36 0.00 46.50 4.30
3269 3356 4.285863 CATCACTCCTTAAGAGACCTCCT 58.714 47.826 3.36 0.00 46.50 3.69
3270 3357 3.970842 TCACTCCTTAAGAGACCTCCTC 58.029 50.000 3.36 0.00 46.50 3.71
3271 3358 3.028130 CACTCCTTAAGAGACCTCCTCC 58.972 54.545 3.36 0.00 46.50 4.30
3272 3359 2.023791 ACTCCTTAAGAGACCTCCTCCC 60.024 54.545 3.36 0.00 46.50 4.30
3273 3360 1.291335 TCCTTAAGAGACCTCCTCCCC 59.709 57.143 3.36 0.00 42.97 4.81
3274 3361 1.292546 CCTTAAGAGACCTCCTCCCCT 59.707 57.143 3.36 0.00 42.97 4.79
3275 3362 2.293251 CCTTAAGAGACCTCCTCCCCTT 60.293 54.545 3.36 0.00 42.97 3.95
3276 3363 3.455849 CTTAAGAGACCTCCTCCCCTTT 58.544 50.000 0.00 0.00 42.97 3.11
3277 3364 1.959710 AAGAGACCTCCTCCCCTTTC 58.040 55.000 0.00 0.00 42.97 2.62
3278 3365 0.324830 AGAGACCTCCTCCCCTTTCG 60.325 60.000 0.00 0.00 42.97 3.46
3279 3366 1.306226 AGACCTCCTCCCCTTTCGG 60.306 63.158 0.00 0.00 0.00 4.30
3280 3367 1.612739 GACCTCCTCCCCTTTCGGT 60.613 63.158 0.00 0.00 0.00 4.69
3281 3368 1.900545 GACCTCCTCCCCTTTCGGTG 61.901 65.000 0.00 0.00 0.00 4.94
3282 3369 2.269241 CTCCTCCCCTTTCGGTGC 59.731 66.667 0.00 0.00 0.00 5.01
3283 3370 2.203938 TCCTCCCCTTTCGGTGCT 60.204 61.111 0.00 0.00 0.00 4.40
3284 3371 2.245438 CTCCTCCCCTTTCGGTGCTC 62.245 65.000 0.00 0.00 0.00 4.26
3285 3372 2.125512 CTCCCCTTTCGGTGCTCG 60.126 66.667 0.00 0.00 40.90 5.03
3286 3373 4.388499 TCCCCTTTCGGTGCTCGC 62.388 66.667 0.00 0.00 39.05 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.292865 CCGTTATGGCAATGTTGTGTAGATAG 60.293 42.308 0.00 0.00 0.00 2.08
22 23 7.915293 TCACAGAACATAACAAATTATCCGT 57.085 32.000 0.00 0.00 0.00 4.69
24 25 9.941664 CAGATCACAGAACATAACAAATTATCC 57.058 33.333 0.00 0.00 0.00 2.59
45 46 7.516198 ACAATTATAGGGCAATCAACAGATC 57.484 36.000 0.00 0.00 0.00 2.75
46 47 7.902920 AACAATTATAGGGCAATCAACAGAT 57.097 32.000 0.00 0.00 0.00 2.90
48 49 9.868277 TTTAAACAATTATAGGGCAATCAACAG 57.132 29.630 0.00 0.00 0.00 3.16
151 154 9.959721 AAAAATATAAGCGGATATCCACTGTAT 57.040 29.630 21.70 16.83 35.14 2.29
218 222 2.036089 GTCCAATTTTTACGTTGGCCCA 59.964 45.455 0.00 0.00 43.58 5.36
222 226 6.308371 AGTACTGTCCAATTTTTACGTTGG 57.692 37.500 0.00 0.00 44.92 3.77
224 228 9.933723 AGTATAGTACTGTCCAATTTTTACGTT 57.066 29.630 5.39 0.00 37.69 3.99
234 238 5.586243 GTGGTACGAGTATAGTACTGTCCAA 59.414 44.000 5.39 0.00 45.03 3.53
298 302 2.651455 CAGACCACAATCTGCATCCAT 58.349 47.619 0.00 0.00 39.77 3.41
299 303 2.118313 CAGACCACAATCTGCATCCA 57.882 50.000 0.00 0.00 39.77 3.41
339 344 1.003355 CCCAGCACACGTTCCATCT 60.003 57.895 0.00 0.00 0.00 2.90
361 366 1.746615 CCTGCCATCCACGAACCAG 60.747 63.158 0.00 0.00 0.00 4.00
399 404 4.553330 AACATTCCCACACGACTAAGAT 57.447 40.909 0.00 0.00 0.00 2.40
415 421 5.525378 GCCATCGAACTTCAGATCTAACATT 59.475 40.000 0.00 0.00 0.00 2.71
419 425 3.130516 ACGCCATCGAACTTCAGATCTAA 59.869 43.478 0.00 0.00 39.41 2.10
420 426 2.688446 ACGCCATCGAACTTCAGATCTA 59.312 45.455 0.00 0.00 39.41 1.98
428 434 1.369692 TGGACACGCCATCGAACTT 59.630 52.632 0.00 0.00 43.33 2.66
446 452 1.420532 TTAGACCGGGGCAACAACCT 61.421 55.000 6.32 0.00 39.74 3.50
449 455 1.828979 GAATTAGACCGGGGCAACAA 58.171 50.000 6.32 0.00 39.74 2.83
474 480 3.319689 ACCAAAAGTGAAACCATTACCGG 59.680 43.478 0.00 0.00 37.80 5.28
580 590 1.477553 CACCATAGCAGCCACCAAAT 58.522 50.000 0.00 0.00 0.00 2.32
629 639 5.298527 AGACCGAAGAAACCTTTAAACTTGG 59.701 40.000 0.00 0.00 0.00 3.61
675 686 6.639563 AGCCTTTACACAAAAGAACAACAAT 58.360 32.000 0.00 0.00 46.44 2.71
685 696 4.904253 AAACGCTAGCCTTTACACAAAA 57.096 36.364 9.66 0.00 0.00 2.44
725 737 2.290464 CCACGTACAAACCAACCTGAA 58.710 47.619 0.00 0.00 0.00 3.02
732 744 2.158928 AGTACAAGCCACGTACAAACCA 60.159 45.455 9.73 0.00 41.40 3.67
755 767 9.307121 CGTGTCTCATTTATATCATAAGGATCC 57.693 37.037 2.48 2.48 37.44 3.36
803 816 4.348168 TCTGCCTAAGTCAAAAACCTCTCT 59.652 41.667 0.00 0.00 0.00 3.10
809 822 4.378459 CGATGGTCTGCCTAAGTCAAAAAC 60.378 45.833 0.00 0.00 35.27 2.43
908 923 5.125739 GTGTGTGACCTAGAGTAGCACTATT 59.874 44.000 0.00 0.00 35.44 1.73
1024 1044 6.644592 CACAGGTACAAGAAGAAGAAGAAGAG 59.355 42.308 0.00 0.00 0.00 2.85
1049 1069 4.693566 AGGACTATTCTCGAGTGATCGATC 59.306 45.833 18.72 18.72 41.56 3.69
1066 1086 5.809001 TCGACACTAACTTCCTAAGGACTA 58.191 41.667 0.00 0.00 0.00 2.59
1070 1090 5.341617 GTGATCGACACTAACTTCCTAAGG 58.658 45.833 9.86 0.00 45.13 2.69
1084 1104 4.221924 TCTTAATTGGTCCAGTGATCGACA 59.778 41.667 0.00 0.00 0.00 4.35
1096 1116 3.356290 ACAGCACCCATCTTAATTGGTC 58.644 45.455 4.42 0.00 28.50 4.02
1243 1263 4.082523 CGGCCTCACCCACGATGT 62.083 66.667 0.00 0.00 33.26 3.06
1245 1265 3.771160 GACGGCCTCACCCACGAT 61.771 66.667 0.00 0.00 33.26 3.73
1334 1354 0.250209 ATGCACCATGAGATCGAGCC 60.250 55.000 0.00 0.00 0.00 4.70
1407 1427 2.795973 CGTCGCATCCCTGTACGA 59.204 61.111 0.00 0.00 36.56 3.43
2181 2201 3.628053 TTTTTATGACGTCGACGCATC 57.372 42.857 34.38 27.42 44.43 3.91
2225 2245 3.218453 TGTGTTCCTGTGGTTATTGTGG 58.782 45.455 0.00 0.00 0.00 4.17
2262 2282 4.381863 CACACACACGACAATACACTAGTC 59.618 45.833 0.00 0.00 0.00 2.59
2291 2311 4.142469 GCAACACCTTCACAAGTTACTGTT 60.142 41.667 0.00 0.00 0.00 3.16
2292 2312 3.377172 GCAACACCTTCACAAGTTACTGT 59.623 43.478 0.00 0.00 0.00 3.55
2293 2313 3.546020 CGCAACACCTTCACAAGTTACTG 60.546 47.826 0.00 0.00 0.00 2.74
2294 2314 2.612212 CGCAACACCTTCACAAGTTACT 59.388 45.455 0.00 0.00 0.00 2.24
2295 2315 2.353579 ACGCAACACCTTCACAAGTTAC 59.646 45.455 0.00 0.00 0.00 2.50
2318 2391 5.412640 TGCACATTTATTGGCAAATCTCAG 58.587 37.500 3.01 0.00 31.33 3.35
2513 2590 7.989741 TGCTCATTTTTCATAAGGGAACAAAAA 59.010 29.630 0.00 0.00 32.16 1.94
2576 2657 1.135972 CCTCCAAACATCGTTGCGAAG 60.136 52.381 0.00 0.00 39.99 3.79
2580 2666 1.463674 ATCCCTCCAAACATCGTTGC 58.536 50.000 0.00 0.00 0.00 4.17
2602 2688 6.513806 TTGGTGATCCACATCATTTTGTAG 57.486 37.500 0.00 0.00 44.22 2.74
2611 2697 3.575506 TGGCTTGGTGATCCACATC 57.424 52.632 0.00 0.00 44.22 3.06
2690 2776 8.836413 CGGTTTATCAATGAGAATAGGCTTAAA 58.164 33.333 0.00 0.00 0.00 1.52
2702 2788 5.505173 AAGAATGCCGGTTTATCAATGAG 57.495 39.130 1.90 0.00 0.00 2.90
2730 2816 5.709164 AGGAGTTGAATGTCAGAAAGAATGG 59.291 40.000 0.00 0.00 0.00 3.16
2742 2828 3.006967 ACTGCGACTAAGGAGTTGAATGT 59.993 43.478 0.00 0.00 39.86 2.71
2757 2843 2.527442 GGAGTTTATGCAACTGCGAC 57.473 50.000 0.00 0.00 46.53 5.19
2809 2895 7.881232 ACCCACGTTCTAATTTCTTCTGAATAA 59.119 33.333 0.00 0.00 31.56 1.40
2812 2898 5.617252 ACCCACGTTCTAATTTCTTCTGAA 58.383 37.500 0.00 0.00 0.00 3.02
2828 2914 0.539986 AATCTAATGGCGACCCACGT 59.460 50.000 0.00 0.00 45.77 4.49
2872 2959 3.027412 AGTTCTCGAGGCTATGTCATGT 58.973 45.455 13.56 0.00 0.00 3.21
2909 2996 6.183360 GGGGTCATTTTTATCAGTCTCAATGG 60.183 42.308 0.00 0.00 0.00 3.16
2916 3003 7.283329 ACTATCTGGGGTCATTTTTATCAGTC 58.717 38.462 0.00 0.00 0.00 3.51
2917 3004 7.213178 ACTATCTGGGGTCATTTTTATCAGT 57.787 36.000 0.00 0.00 0.00 3.41
2918 3005 8.525290 AAACTATCTGGGGTCATTTTTATCAG 57.475 34.615 0.00 0.00 0.00 2.90
2919 3006 7.559897 GGAAACTATCTGGGGTCATTTTTATCA 59.440 37.037 0.00 0.00 0.00 2.15
2920 3007 7.559897 TGGAAACTATCTGGGGTCATTTTTATC 59.440 37.037 0.00 0.00 0.00 1.75
2921 3008 7.418378 TGGAAACTATCTGGGGTCATTTTTAT 58.582 34.615 0.00 0.00 0.00 1.40
2922 3009 6.795590 TGGAAACTATCTGGGGTCATTTTTA 58.204 36.000 0.00 0.00 0.00 1.52
2923 3010 5.650283 TGGAAACTATCTGGGGTCATTTTT 58.350 37.500 0.00 0.00 0.00 1.94
2924 3011 5.269554 TGGAAACTATCTGGGGTCATTTT 57.730 39.130 0.00 0.00 0.00 1.82
2925 3012 4.946160 TGGAAACTATCTGGGGTCATTT 57.054 40.909 0.00 0.00 0.00 2.32
2926 3013 4.444876 CGATGGAAACTATCTGGGGTCATT 60.445 45.833 0.00 0.00 0.00 2.57
2927 3014 3.071602 CGATGGAAACTATCTGGGGTCAT 59.928 47.826 0.00 0.00 0.00 3.06
2928 3015 2.434336 CGATGGAAACTATCTGGGGTCA 59.566 50.000 0.00 0.00 0.00 4.02
2929 3016 2.434702 ACGATGGAAACTATCTGGGGTC 59.565 50.000 0.00 0.00 0.00 4.46
2930 3017 2.170607 CACGATGGAAACTATCTGGGGT 59.829 50.000 0.00 0.00 0.00 4.95
2931 3018 2.434336 TCACGATGGAAACTATCTGGGG 59.566 50.000 0.00 0.00 0.00 4.96
2932 3019 3.819564 TCACGATGGAAACTATCTGGG 57.180 47.619 0.00 0.00 0.00 4.45
2933 3020 4.747108 GTGATCACGATGGAAACTATCTGG 59.253 45.833 10.69 0.00 0.00 3.86
2934 3021 5.896922 GTGATCACGATGGAAACTATCTG 57.103 43.478 10.69 0.00 0.00 2.90
2972 3059 3.518998 ACGATGGACGAGGAGCGG 61.519 66.667 0.00 0.00 46.49 5.52
2973 3060 2.278206 CACGATGGACGAGGAGCG 60.278 66.667 0.00 0.00 45.77 5.03
2974 3061 2.583593 GCACGATGGACGAGGAGC 60.584 66.667 0.00 0.00 45.77 4.70
2975 3062 1.101635 TAGGCACGATGGACGAGGAG 61.102 60.000 0.00 0.00 45.77 3.69
2976 3063 1.077285 TAGGCACGATGGACGAGGA 60.077 57.895 0.00 0.00 45.77 3.71
2977 3064 1.360551 CTAGGCACGATGGACGAGG 59.639 63.158 0.00 0.00 45.77 4.63
2978 3065 1.264557 CTACTAGGCACGATGGACGAG 59.735 57.143 0.00 0.00 45.77 4.18
2979 3066 1.134310 TCTACTAGGCACGATGGACGA 60.134 52.381 0.00 0.00 45.77 4.20
2981 3068 2.608261 GCATCTACTAGGCACGATGGAC 60.608 54.545 11.94 0.00 35.11 4.02
2982 3069 1.613925 GCATCTACTAGGCACGATGGA 59.386 52.381 11.94 0.00 35.11 3.41
2983 3070 1.341209 TGCATCTACTAGGCACGATGG 59.659 52.381 11.94 0.00 40.64 3.51
2984 3071 2.800881 TGCATCTACTAGGCACGATG 57.199 50.000 0.00 1.96 40.64 3.84
2998 3085 3.397482 GGAGTACATCAGATGGTGCATC 58.603 50.000 15.13 0.00 40.80 3.91
2999 3086 2.105477 GGGAGTACATCAGATGGTGCAT 59.895 50.000 15.13 0.00 33.60 3.96
3000 3087 1.486310 GGGAGTACATCAGATGGTGCA 59.514 52.381 15.13 0.00 33.60 4.57
3001 3088 1.765314 AGGGAGTACATCAGATGGTGC 59.235 52.381 15.13 4.28 33.60 5.01
3002 3089 2.366916 GGAGGGAGTACATCAGATGGTG 59.633 54.545 15.13 0.00 33.60 4.17
3003 3090 2.683768 GGAGGGAGTACATCAGATGGT 58.316 52.381 15.13 3.40 33.60 3.55
3004 3091 1.615883 CGGAGGGAGTACATCAGATGG 59.384 57.143 15.13 0.00 33.60 3.51
3005 3092 2.311463 ACGGAGGGAGTACATCAGATG 58.689 52.381 9.03 9.03 0.00 2.90
3006 3093 2.757894 ACGGAGGGAGTACATCAGAT 57.242 50.000 0.00 0.00 0.00 2.90
3007 3094 2.526888 AACGGAGGGAGTACATCAGA 57.473 50.000 0.00 0.00 0.00 3.27
3008 3095 3.611766 AAAACGGAGGGAGTACATCAG 57.388 47.619 0.00 0.00 0.00 2.90
3009 3096 6.989155 ATATAAAACGGAGGGAGTACATCA 57.011 37.500 0.00 0.00 0.00 3.07
3010 3097 8.583296 AGTAATATAAAACGGAGGGAGTACATC 58.417 37.037 0.00 0.00 0.00 3.06
3011 3098 8.488308 AGTAATATAAAACGGAGGGAGTACAT 57.512 34.615 0.00 0.00 0.00 2.29
3012 3099 7.902920 AGTAATATAAAACGGAGGGAGTACA 57.097 36.000 0.00 0.00 0.00 2.90
3013 3100 8.200120 ACAAGTAATATAAAACGGAGGGAGTAC 58.800 37.037 0.00 0.00 0.00 2.73
3014 3101 8.310122 ACAAGTAATATAAAACGGAGGGAGTA 57.690 34.615 0.00 0.00 0.00 2.59
3015 3102 7.191593 ACAAGTAATATAAAACGGAGGGAGT 57.808 36.000 0.00 0.00 0.00 3.85
3016 3103 6.420008 CGACAAGTAATATAAAACGGAGGGAG 59.580 42.308 0.00 0.00 0.00 4.30
3017 3104 6.275335 CGACAAGTAATATAAAACGGAGGGA 58.725 40.000 0.00 0.00 0.00 4.20
3018 3105 5.050567 GCGACAAGTAATATAAAACGGAGGG 60.051 44.000 0.00 0.00 0.00 4.30
3019 3106 5.751990 AGCGACAAGTAATATAAAACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
3020 3107 6.474427 TCAGCGACAAGTAATATAAAACGGAG 59.526 38.462 0.00 0.00 0.00 4.63
3021 3108 6.331845 TCAGCGACAAGTAATATAAAACGGA 58.668 36.000 0.00 0.00 0.00 4.69
3022 3109 6.578020 TCAGCGACAAGTAATATAAAACGG 57.422 37.500 0.00 0.00 0.00 4.44
3030 3117 9.941664 GTACTACTAAATCAGCGACAAGTAATA 57.058 33.333 0.00 0.00 0.00 0.98
3031 3118 8.684520 AGTACTACTAAATCAGCGACAAGTAAT 58.315 33.333 0.00 0.00 0.00 1.89
3032 3119 8.048534 AGTACTACTAAATCAGCGACAAGTAA 57.951 34.615 0.00 0.00 0.00 2.24
3033 3120 7.621428 AGTACTACTAAATCAGCGACAAGTA 57.379 36.000 0.00 0.00 0.00 2.24
3034 3121 6.512342 AGTACTACTAAATCAGCGACAAGT 57.488 37.500 0.00 0.00 0.00 3.16
3035 3122 8.906636 TTTAGTACTACTAAATCAGCGACAAG 57.093 34.615 14.85 0.00 43.48 3.16
3047 3134 8.048534 ACTTGTCGCTGATTTAGTACTACTAA 57.951 34.615 0.91 4.76 38.79 2.24
3048 3135 7.621428 ACTTGTCGCTGATTTAGTACTACTA 57.379 36.000 0.91 0.00 0.00 1.82
3049 3136 6.512342 ACTTGTCGCTGATTTAGTACTACT 57.488 37.500 0.91 0.00 0.00 2.57
3050 3137 8.853469 ATTACTTGTCGCTGATTTAGTACTAC 57.147 34.615 0.91 0.00 0.00 2.73
3052 3139 9.464714 CATATTACTTGTCGCTGATTTAGTACT 57.535 33.333 0.00 0.00 0.00 2.73
3053 3140 8.700644 CCATATTACTTGTCGCTGATTTAGTAC 58.299 37.037 0.00 0.00 0.00 2.73
3054 3141 8.635328 TCCATATTACTTGTCGCTGATTTAGTA 58.365 33.333 0.00 0.00 0.00 1.82
3055 3142 7.497595 TCCATATTACTTGTCGCTGATTTAGT 58.502 34.615 0.00 0.00 0.00 2.24
3056 3143 7.946655 TCCATATTACTTGTCGCTGATTTAG 57.053 36.000 0.00 0.00 0.00 1.85
3057 3144 7.042992 CGTTCCATATTACTTGTCGCTGATTTA 60.043 37.037 0.00 0.00 0.00 1.40
3058 3145 6.238103 CGTTCCATATTACTTGTCGCTGATTT 60.238 38.462 0.00 0.00 0.00 2.17
3059 3146 5.234329 CGTTCCATATTACTTGTCGCTGATT 59.766 40.000 0.00 0.00 0.00 2.57
3060 3147 4.745125 CGTTCCATATTACTTGTCGCTGAT 59.255 41.667 0.00 0.00 0.00 2.90
3061 3148 4.109766 CGTTCCATATTACTTGTCGCTGA 58.890 43.478 0.00 0.00 0.00 4.26
3062 3149 3.245284 CCGTTCCATATTACTTGTCGCTG 59.755 47.826 0.00 0.00 0.00 5.18
3063 3150 3.131577 TCCGTTCCATATTACTTGTCGCT 59.868 43.478 0.00 0.00 0.00 4.93
3064 3151 3.450578 TCCGTTCCATATTACTTGTCGC 58.549 45.455 0.00 0.00 0.00 5.19
3065 3152 4.049186 CCTCCGTTCCATATTACTTGTCG 58.951 47.826 0.00 0.00 0.00 4.35
3066 3153 4.100498 TCCCTCCGTTCCATATTACTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
3067 3154 4.035112 TCCCTCCGTTCCATATTACTTGT 58.965 43.478 0.00 0.00 0.00 3.16
3068 3155 4.101119 ACTCCCTCCGTTCCATATTACTTG 59.899 45.833 0.00 0.00 0.00 3.16
3069 3156 4.296056 ACTCCCTCCGTTCCATATTACTT 58.704 43.478 0.00 0.00 0.00 2.24
3070 3157 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
3071 3158 5.796424 TTACTCCCTCCGTTCCATATTAC 57.204 43.478 0.00 0.00 0.00 1.89
3072 3159 6.785963 AGAATTACTCCCTCCGTTCCATATTA 59.214 38.462 0.00 0.00 0.00 0.98
3073 3160 5.607171 AGAATTACTCCCTCCGTTCCATATT 59.393 40.000 0.00 0.00 0.00 1.28
3074 3161 5.012148 CAGAATTACTCCCTCCGTTCCATAT 59.988 44.000 0.00 0.00 0.00 1.78
3075 3162 4.344102 CAGAATTACTCCCTCCGTTCCATA 59.656 45.833 0.00 0.00 0.00 2.74
3076 3163 3.134804 CAGAATTACTCCCTCCGTTCCAT 59.865 47.826 0.00 0.00 0.00 3.41
3077 3164 2.500098 CAGAATTACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
3078 3165 2.764572 TCAGAATTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
3079 3166 3.181474 CCTCAGAATTACTCCCTCCGTTC 60.181 52.174 0.00 0.00 0.00 3.95
3080 3167 2.766828 CCTCAGAATTACTCCCTCCGTT 59.233 50.000 0.00 0.00 0.00 4.44
3081 3168 2.292323 ACCTCAGAATTACTCCCTCCGT 60.292 50.000 0.00 0.00 0.00 4.69
3082 3169 2.101582 CACCTCAGAATTACTCCCTCCG 59.898 54.545 0.00 0.00 0.00 4.63
3083 3170 2.436173 CCACCTCAGAATTACTCCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
3084 3171 2.436173 CCCACCTCAGAATTACTCCCTC 59.564 54.545 0.00 0.00 0.00 4.30
3085 3172 2.482494 CCCACCTCAGAATTACTCCCT 58.518 52.381 0.00 0.00 0.00 4.20
3086 3173 1.490910 CCCCACCTCAGAATTACTCCC 59.509 57.143 0.00 0.00 0.00 4.30
3087 3174 1.490910 CCCCCACCTCAGAATTACTCC 59.509 57.143 0.00 0.00 0.00 3.85
3088 3175 2.436173 CTCCCCCACCTCAGAATTACTC 59.564 54.545 0.00 0.00 0.00 2.59
3089 3176 2.045885 TCTCCCCCACCTCAGAATTACT 59.954 50.000 0.00 0.00 0.00 2.24
3090 3177 2.170817 GTCTCCCCCACCTCAGAATTAC 59.829 54.545 0.00 0.00 0.00 1.89
3091 3178 2.478292 GTCTCCCCCACCTCAGAATTA 58.522 52.381 0.00 0.00 0.00 1.40
3092 3179 1.290134 GTCTCCCCCACCTCAGAATT 58.710 55.000 0.00 0.00 0.00 2.17
3093 3180 0.621862 GGTCTCCCCCACCTCAGAAT 60.622 60.000 0.00 0.00 0.00 2.40
3094 3181 1.229529 GGTCTCCCCCACCTCAGAA 60.230 63.158 0.00 0.00 0.00 3.02
3095 3182 1.826384 ATGGTCTCCCCCACCTCAGA 61.826 60.000 0.00 0.00 37.31 3.27
3096 3183 1.307343 ATGGTCTCCCCCACCTCAG 60.307 63.158 0.00 0.00 37.31 3.35
3097 3184 1.616327 CATGGTCTCCCCCACCTCA 60.616 63.158 0.00 0.00 37.31 3.86
3098 3185 1.616628 ACATGGTCTCCCCCACCTC 60.617 63.158 0.00 0.00 37.31 3.85
3099 3186 1.616628 GACATGGTCTCCCCCACCT 60.617 63.158 0.00 0.00 37.31 4.00
3100 3187 1.497309 TTGACATGGTCTCCCCCACC 61.497 60.000 0.00 0.00 37.31 4.61
3101 3188 0.404040 TTTGACATGGTCTCCCCCAC 59.596 55.000 0.00 0.00 37.31 4.61
3102 3189 0.404040 GTTTGACATGGTCTCCCCCA 59.596 55.000 0.00 0.00 39.27 4.96
3103 3190 0.676782 CGTTTGACATGGTCTCCCCC 60.677 60.000 0.00 0.00 33.15 5.40
3104 3191 1.305930 GCGTTTGACATGGTCTCCCC 61.306 60.000 0.00 0.00 33.15 4.81
3105 3192 1.305930 GGCGTTTGACATGGTCTCCC 61.306 60.000 0.00 0.00 33.15 4.30
3106 3193 0.321653 AGGCGTTTGACATGGTCTCC 60.322 55.000 0.00 0.00 33.15 3.71
3107 3194 2.094182 TCTAGGCGTTTGACATGGTCTC 60.094 50.000 0.00 0.00 33.15 3.36
3108 3195 1.899814 TCTAGGCGTTTGACATGGTCT 59.100 47.619 0.00 0.00 33.15 3.85
3109 3196 2.380084 TCTAGGCGTTTGACATGGTC 57.620 50.000 0.00 0.00 0.00 4.02
3110 3197 3.350219 AATCTAGGCGTTTGACATGGT 57.650 42.857 0.00 0.00 0.00 3.55
3111 3198 4.273480 CCTAAATCTAGGCGTTTGACATGG 59.727 45.833 0.00 0.00 38.50 3.66
3112 3199 5.409643 CCTAAATCTAGGCGTTTGACATG 57.590 43.478 0.00 0.00 38.50 3.21
3124 3211 7.147707 ACCCACTGCTACTAAACCTAAATCTAG 60.148 40.741 0.00 0.00 0.00 2.43
3125 3212 6.670902 ACCCACTGCTACTAAACCTAAATCTA 59.329 38.462 0.00 0.00 0.00 1.98
3126 3213 5.487845 ACCCACTGCTACTAAACCTAAATCT 59.512 40.000 0.00 0.00 0.00 2.40
3127 3214 5.742063 ACCCACTGCTACTAAACCTAAATC 58.258 41.667 0.00 0.00 0.00 2.17
3128 3215 5.487845 AGACCCACTGCTACTAAACCTAAAT 59.512 40.000 0.00 0.00 0.00 1.40
3129 3216 4.842380 AGACCCACTGCTACTAAACCTAAA 59.158 41.667 0.00 0.00 0.00 1.85
3130 3217 4.422984 AGACCCACTGCTACTAAACCTAA 58.577 43.478 0.00 0.00 0.00 2.69
3131 3218 4.021916 GAGACCCACTGCTACTAAACCTA 58.978 47.826 0.00 0.00 0.00 3.08
3132 3219 2.832733 GAGACCCACTGCTACTAAACCT 59.167 50.000 0.00 0.00 0.00 3.50
3133 3220 2.416972 CGAGACCCACTGCTACTAAACC 60.417 54.545 0.00 0.00 0.00 3.27
3134 3221 2.230750 ACGAGACCCACTGCTACTAAAC 59.769 50.000 0.00 0.00 0.00 2.01
3135 3222 2.522185 ACGAGACCCACTGCTACTAAA 58.478 47.619 0.00 0.00 0.00 1.85
3136 3223 2.211250 ACGAGACCCACTGCTACTAA 57.789 50.000 0.00 0.00 0.00 2.24
3137 3224 2.089980 GAACGAGACCCACTGCTACTA 58.910 52.381 0.00 0.00 0.00 1.82
3138 3225 0.889306 GAACGAGACCCACTGCTACT 59.111 55.000 0.00 0.00 0.00 2.57
3139 3226 0.108756 GGAACGAGACCCACTGCTAC 60.109 60.000 0.00 0.00 0.00 3.58
3140 3227 1.255667 GGGAACGAGACCCACTGCTA 61.256 60.000 10.37 0.00 46.05 3.49
3141 3228 2.584391 GGGAACGAGACCCACTGCT 61.584 63.158 10.37 0.00 46.05 4.24
3142 3229 2.047179 GGGAACGAGACCCACTGC 60.047 66.667 10.37 0.00 46.05 4.40
3147 3234 6.627612 ATTCCAAAGAAGGGAACGAGACCC 62.628 50.000 7.91 7.91 46.53 4.46
3148 3235 1.346722 TCCAAAGAAGGGAACGAGACC 59.653 52.381 0.00 0.00 0.00 3.85
3149 3236 2.833631 TCCAAAGAAGGGAACGAGAC 57.166 50.000 0.00 0.00 0.00 3.36
3150 3237 4.367039 AATTCCAAAGAAGGGAACGAGA 57.633 40.909 0.00 0.00 46.53 4.04
3151 3238 4.518970 TCAAATTCCAAAGAAGGGAACGAG 59.481 41.667 0.00 0.00 46.53 4.18
3152 3239 4.465886 TCAAATTCCAAAGAAGGGAACGA 58.534 39.130 0.00 0.00 46.53 3.85
3153 3240 4.798574 CTCAAATTCCAAAGAAGGGAACG 58.201 43.478 0.00 0.00 46.53 3.95
3154 3241 4.560128 GCTCAAATTCCAAAGAAGGGAAC 58.440 43.478 0.00 0.00 46.53 3.62
3156 3243 2.819608 CGCTCAAATTCCAAAGAAGGGA 59.180 45.455 0.00 0.00 34.86 4.20
3157 3244 2.819608 TCGCTCAAATTCCAAAGAAGGG 59.180 45.455 0.00 0.00 34.86 3.95
3158 3245 4.156556 TGATCGCTCAAATTCCAAAGAAGG 59.843 41.667 0.00 0.00 34.86 3.46
3159 3246 5.091431 GTGATCGCTCAAATTCCAAAGAAG 58.909 41.667 0.00 0.00 31.72 2.85
3160 3247 4.761739 AGTGATCGCTCAAATTCCAAAGAA 59.238 37.500 2.02 0.00 32.39 2.52
3161 3248 4.326826 AGTGATCGCTCAAATTCCAAAGA 58.673 39.130 2.02 0.00 31.85 2.52
3162 3249 4.691860 AGTGATCGCTCAAATTCCAAAG 57.308 40.909 2.02 0.00 31.85 2.77
3163 3250 5.452078 AAAGTGATCGCTCAAATTCCAAA 57.548 34.783 9.70 0.00 31.85 3.28
3164 3251 5.452078 AAAAGTGATCGCTCAAATTCCAA 57.548 34.783 9.70 0.00 31.85 3.53
3165 3252 6.599244 AGATAAAAGTGATCGCTCAAATTCCA 59.401 34.615 9.70 0.00 31.85 3.53
3166 3253 7.020914 AGATAAAAGTGATCGCTCAAATTCC 57.979 36.000 9.70 0.00 31.85 3.01
3167 3254 9.643652 CTAAGATAAAAGTGATCGCTCAAATTC 57.356 33.333 9.70 3.99 31.85 2.17
3168 3255 8.125448 GCTAAGATAAAAGTGATCGCTCAAATT 58.875 33.333 9.70 5.66 31.85 1.82
3169 3256 7.497249 AGCTAAGATAAAAGTGATCGCTCAAAT 59.503 33.333 9.70 3.21 31.85 2.32
3170 3257 6.818644 AGCTAAGATAAAAGTGATCGCTCAAA 59.181 34.615 9.70 0.00 31.85 2.69
3171 3258 6.341316 AGCTAAGATAAAAGTGATCGCTCAA 58.659 36.000 9.70 0.00 31.85 3.02
3172 3259 5.907207 AGCTAAGATAAAAGTGATCGCTCA 58.093 37.500 9.70 0.00 0.00 4.26
3173 3260 7.932120 TTAGCTAAGATAAAAGTGATCGCTC 57.068 36.000 9.70 0.00 0.00 5.03
3174 3261 8.894768 AATTAGCTAAGATAAAAGTGATCGCT 57.105 30.769 12.54 2.02 0.00 4.93
3175 3262 9.374960 CAAATTAGCTAAGATAAAAGTGATCGC 57.625 33.333 12.54 0.00 0.00 4.58
3181 3268 9.626045 GCAACACAAATTAGCTAAGATAAAAGT 57.374 29.630 12.54 2.20 0.00 2.66
3182 3269 9.076596 GGCAACACAAATTAGCTAAGATAAAAG 57.923 33.333 12.54 1.61 0.00 2.27
3183 3270 8.802267 AGGCAACACAAATTAGCTAAGATAAAA 58.198 29.630 12.54 0.00 41.41 1.52
3184 3271 8.348285 AGGCAACACAAATTAGCTAAGATAAA 57.652 30.769 12.54 0.00 41.41 1.40
3185 3272 7.609918 TGAGGCAACACAAATTAGCTAAGATAA 59.390 33.333 12.54 0.00 41.41 1.75
3186 3273 7.109501 TGAGGCAACACAAATTAGCTAAGATA 58.890 34.615 12.54 0.00 41.41 1.98
3187 3274 5.945784 TGAGGCAACACAAATTAGCTAAGAT 59.054 36.000 12.54 0.44 41.41 2.40
3188 3275 5.312895 TGAGGCAACACAAATTAGCTAAGA 58.687 37.500 12.54 0.00 41.41 2.10
3189 3276 5.627499 TGAGGCAACACAAATTAGCTAAG 57.373 39.130 12.54 0.96 41.41 2.18
3190 3277 5.048083 CCTTGAGGCAACACAAATTAGCTAA 60.048 40.000 8.99 8.99 46.64 3.09
3191 3278 4.458989 CCTTGAGGCAACACAAATTAGCTA 59.541 41.667 0.00 0.00 46.64 3.32
3192 3279 3.256631 CCTTGAGGCAACACAAATTAGCT 59.743 43.478 0.00 0.00 46.64 3.32
3193 3280 3.005791 ACCTTGAGGCAACACAAATTAGC 59.994 43.478 0.00 0.00 46.64 3.09
3194 3281 4.853924 ACCTTGAGGCAACACAAATTAG 57.146 40.909 0.00 0.00 46.64 1.73
3195 3282 4.261405 CGAACCTTGAGGCAACACAAATTA 60.261 41.667 0.00 0.00 46.64 1.40
3196 3283 3.490761 CGAACCTTGAGGCAACACAAATT 60.491 43.478 0.00 0.00 46.64 1.82
3197 3284 2.034558 CGAACCTTGAGGCAACACAAAT 59.965 45.455 0.00 0.00 46.64 2.32
3198 3285 1.403679 CGAACCTTGAGGCAACACAAA 59.596 47.619 0.00 0.00 46.64 2.83
3199 3286 1.021202 CGAACCTTGAGGCAACACAA 58.979 50.000 0.00 0.00 45.22 3.33
3200 3287 0.179234 TCGAACCTTGAGGCAACACA 59.821 50.000 0.00 0.00 39.32 3.72
3201 3288 1.197721 CATCGAACCTTGAGGCAACAC 59.802 52.381 0.00 0.00 39.32 3.32
3202 3289 1.522668 CATCGAACCTTGAGGCAACA 58.477 50.000 0.00 0.00 39.32 3.33
3203 3290 0.169009 GCATCGAACCTTGAGGCAAC 59.831 55.000 0.00 0.00 42.34 4.17
3204 3291 2.555123 GCATCGAACCTTGAGGCAA 58.445 52.632 0.00 0.00 42.34 4.52
3205 3292 4.301505 GCATCGAACCTTGAGGCA 57.698 55.556 0.00 0.00 42.34 4.75
3206 3293 0.659957 GATGCATCGAACCTTGAGGC 59.340 55.000 11.68 0.00 43.04 4.70
3207 3294 1.667724 GTGATGCATCGAACCTTGAGG 59.332 52.381 21.34 0.00 42.17 3.86
3208 3295 2.625737 AGTGATGCATCGAACCTTGAG 58.374 47.619 21.34 0.00 0.00 3.02
3209 3296 2.768253 AGTGATGCATCGAACCTTGA 57.232 45.000 21.34 0.00 0.00 3.02
3210 3297 3.837213 AAAGTGATGCATCGAACCTTG 57.163 42.857 21.34 0.00 0.00 3.61
3211 3298 4.853924 AAAAAGTGATGCATCGAACCTT 57.146 36.364 21.34 16.12 0.00 3.50
3241 3328 5.423015 GTCTCTTAAGGAGTGATGCATTCA 58.577 41.667 0.00 0.00 42.40 2.57
3242 3329 4.813697 GGTCTCTTAAGGAGTGATGCATTC 59.186 45.833 0.00 0.00 42.40 2.67
3243 3330 4.472833 AGGTCTCTTAAGGAGTGATGCATT 59.527 41.667 0.00 0.00 42.40 3.56
3244 3331 4.036518 AGGTCTCTTAAGGAGTGATGCAT 58.963 43.478 0.00 0.00 42.40 3.96
3245 3332 3.445008 AGGTCTCTTAAGGAGTGATGCA 58.555 45.455 1.85 0.00 42.40 3.96
3246 3333 3.181470 GGAGGTCTCTTAAGGAGTGATGC 60.181 52.174 1.85 0.00 42.40 3.91
3247 3334 4.285863 AGGAGGTCTCTTAAGGAGTGATG 58.714 47.826 1.85 0.00 42.40 3.07
3248 3335 4.542697 GAGGAGGTCTCTTAAGGAGTGAT 58.457 47.826 1.85 0.00 42.40 3.06
3249 3336 3.309265 GGAGGAGGTCTCTTAAGGAGTGA 60.309 52.174 1.85 0.00 42.40 3.41
3250 3337 3.028130 GGAGGAGGTCTCTTAAGGAGTG 58.972 54.545 1.85 0.00 42.40 3.51
3251 3338 2.023791 GGGAGGAGGTCTCTTAAGGAGT 60.024 54.545 1.85 0.00 42.40 3.85
3252 3339 2.673258 GGGAGGAGGTCTCTTAAGGAG 58.327 57.143 1.85 0.00 42.10 3.69
3253 3340 1.291335 GGGGAGGAGGTCTCTTAAGGA 59.709 57.143 1.85 0.00 42.10 3.36
3254 3341 1.292546 AGGGGAGGAGGTCTCTTAAGG 59.707 57.143 1.85 0.00 42.10 2.69
3255 3342 2.858787 AGGGGAGGAGGTCTCTTAAG 57.141 55.000 0.00 0.00 42.10 1.85
3256 3343 3.451890 GAAAGGGGAGGAGGTCTCTTAA 58.548 50.000 0.00 0.00 42.10 1.85
3257 3344 2.623502 CGAAAGGGGAGGAGGTCTCTTA 60.624 54.545 0.00 0.00 42.10 2.10
3258 3345 1.897647 CGAAAGGGGAGGAGGTCTCTT 60.898 57.143 0.00 0.00 42.10 2.85
3259 3346 0.324830 CGAAAGGGGAGGAGGTCTCT 60.325 60.000 0.00 0.00 42.10 3.10
3260 3347 2.203806 CGAAAGGGGAGGAGGTCTC 58.796 63.158 0.00 0.00 41.71 3.36
3261 3348 4.463043 CGAAAGGGGAGGAGGTCT 57.537 61.111 0.00 0.00 0.00 3.85
3297 3384 4.497984 TATTGCGCCACGGCCCAT 62.498 61.111 4.18 0.00 37.98 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.