Multiple sequence alignment - TraesCS7D01G315500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G315500 chr7D 100.000 4233 0 0 1 4233 401553124 401548892 0.000000e+00 7817.0
1 TraesCS7D01G315500 chr7A 90.698 1505 76 30 1968 3427 459210384 459208899 0.000000e+00 1945.0
2 TraesCS7D01G315500 chr7A 91.379 1102 70 9 251 1337 459212117 459211026 0.000000e+00 1485.0
3 TraesCS7D01G315500 chr7A 89.153 590 35 5 1398 1966 459211003 459210422 0.000000e+00 708.0
4 TraesCS7D01G315500 chr7A 96.429 196 7 0 4038 4233 459206820 459206625 1.470000e-84 324.0
5 TraesCS7D01G315500 chr7A 84.713 314 33 8 3490 3791 459208901 459208591 2.470000e-77 300.0
6 TraesCS7D01G315500 chr7A 89.815 216 16 3 3826 4035 459208597 459208382 5.390000e-69 272.0
7 TraesCS7D01G315500 chr7B 88.793 1615 99 39 401 1966 411061775 411060194 0.000000e+00 1905.0
8 TraesCS7D01G315500 chr7B 92.289 1258 55 18 2183 3404 411060009 411058758 0.000000e+00 1748.0
9 TraesCS7D01G315500 chr7B 82.698 682 53 27 3573 4233 411058728 411058091 2.880000e-151 545.0
10 TraesCS7D01G315500 chr7B 90.152 132 12 1 1965 2096 411060159 411060029 2.020000e-38 171.0
11 TraesCS7D01G315500 chr7B 75.285 263 47 13 55 305 411062300 411062044 4.470000e-20 110.0
12 TraesCS7D01G315500 chr5B 87.329 1168 95 27 2186 3317 664475494 664474344 0.000000e+00 1288.0
13 TraesCS7D01G315500 chr5B 86.957 1150 93 28 2186 3294 664417075 664415942 0.000000e+00 1240.0
14 TraesCS7D01G315500 chr5B 88.734 1003 85 18 2195 3186 664503779 664502794 0.000000e+00 1201.0
15 TraesCS7D01G315500 chr5B 81.667 300 43 10 1093 1382 664504509 664504212 5.470000e-59 239.0
16 TraesCS7D01G315500 chr5B 77.582 397 60 18 1095 1479 664417477 664417098 3.320000e-51 213.0
17 TraesCS7D01G315500 chr5A 86.707 1151 98 29 2200 3317 655189328 655188200 0.000000e+00 1227.0
18 TraesCS7D01G315500 chr5A 86.620 1151 99 30 2200 3317 655225490 655224362 0.000000e+00 1221.0
19 TraesCS7D01G315500 chr5A 86.590 1126 91 31 2200 3299 654851756 654850665 0.000000e+00 1188.0
20 TraesCS7D01G315500 chr5A 92.308 52 3 1 3267 3317 654849942 654849891 5.870000e-09 73.1
21 TraesCS7D01G315500 chr5A 87.931 58 7 0 4169 4226 655144792 655144735 7.590000e-08 69.4
22 TraesCS7D01G315500 chr3D 88.625 1011 84 13 2200 3186 2968652 2967649 0.000000e+00 1201.0
23 TraesCS7D01G315500 chr3D 89.831 59 6 0 3259 3317 2967615 2967557 4.540000e-10 76.8
24 TraesCS7D01G315500 chr3B 87.021 1017 101 19 2195 3187 2878885 2879894 0.000000e+00 1118.0
25 TraesCS7D01G315500 chr3B 82.564 195 24 5 50 236 423356460 423356652 3.390000e-36 163.0
26 TraesCS7D01G315500 chr5D 88.026 618 55 16 2580 3186 527841852 527841243 0.000000e+00 713.0
27 TraesCS7D01G315500 chr5D 85.714 77 11 0 50 126 45055272 45055196 9.750000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G315500 chr7D 401548892 401553124 4232 True 7817.00 7817 100.0000 1 4233 1 chr7D.!!$R1 4232
1 TraesCS7D01G315500 chr7A 459206625 459212117 5492 True 839.00 1945 90.3645 251 4233 6 chr7A.!!$R1 3982
2 TraesCS7D01G315500 chr7B 411058091 411062300 4209 True 895.80 1905 85.8434 55 4233 5 chr7B.!!$R1 4178
3 TraesCS7D01G315500 chr5B 664474344 664475494 1150 True 1288.00 1288 87.3290 2186 3317 1 chr5B.!!$R1 1131
4 TraesCS7D01G315500 chr5B 664415942 664417477 1535 True 726.50 1240 82.2695 1095 3294 2 chr5B.!!$R2 2199
5 TraesCS7D01G315500 chr5B 664502794 664504509 1715 True 720.00 1201 85.2005 1093 3186 2 chr5B.!!$R3 2093
6 TraesCS7D01G315500 chr5A 655188200 655189328 1128 True 1227.00 1227 86.7070 2200 3317 1 chr5A.!!$R2 1117
7 TraesCS7D01G315500 chr5A 655224362 655225490 1128 True 1221.00 1221 86.6200 2200 3317 1 chr5A.!!$R3 1117
8 TraesCS7D01G315500 chr5A 654849891 654851756 1865 True 630.55 1188 89.4490 2200 3317 2 chr5A.!!$R4 1117
9 TraesCS7D01G315500 chr3D 2967557 2968652 1095 True 638.90 1201 89.2280 2200 3317 2 chr3D.!!$R1 1117
10 TraesCS7D01G315500 chr3B 2878885 2879894 1009 False 1118.00 1118 87.0210 2195 3187 1 chr3B.!!$F1 992
11 TraesCS7D01G315500 chr5D 527841243 527841852 609 True 713.00 713 88.0260 2580 3186 1 chr5D.!!$R2 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 621 0.041312 CTTGCGTCCGTTTCTGTTGG 60.041 55.0 0.0 0.0 0.0 3.77 F
471 670 0.107017 CCAGCCAGTCCCACCTAATG 60.107 60.0 0.0 0.0 0.0 1.90 F
1377 1611 0.179089 TTTGCGTTTGTTGCCATGCT 60.179 45.0 0.0 0.0 0.0 3.79 F
2632 3035 0.109272 TCATCAAGGTGAGCGACGAC 60.109 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2229 0.035152 AAAGGCAGTGGCATCATCGA 60.035 50.000 20.04 0.0 43.71 3.59 R
1916 2230 0.099968 CAAAGGCAGTGGCATCATCG 59.900 55.000 20.04 0.0 43.71 3.84 R
2969 3418 1.078567 CAGCACCTCCCTCAGCTTC 60.079 63.158 0.00 0.0 34.61 3.86 R
3624 4245 0.108585 TGGGCTCAACAGTGAACTCC 59.891 55.000 0.00 0.0 31.88 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.559063 CGCTGGGCAGGCTAGCAT 62.559 66.667 28.47 6.55 37.29 3.79
20 21 2.905880 GCTGGGCAGGCTAGCATG 60.906 66.667 24.52 24.52 37.40 4.06
21 22 2.203308 CTGGGCAGGCTAGCATGG 60.203 66.667 28.79 12.74 35.83 3.66
22 23 3.016971 TGGGCAGGCTAGCATGGT 61.017 61.111 28.79 1.62 35.83 3.55
23 24 2.276740 GGGCAGGCTAGCATGGTT 59.723 61.111 28.79 0.44 35.83 3.67
24 25 1.380380 GGGCAGGCTAGCATGGTTT 60.380 57.895 28.79 0.00 35.83 3.27
25 26 0.106719 GGGCAGGCTAGCATGGTTTA 60.107 55.000 28.79 0.00 35.83 2.01
26 27 1.479389 GGGCAGGCTAGCATGGTTTAT 60.479 52.381 28.79 0.00 35.83 1.40
27 28 1.610522 GGCAGGCTAGCATGGTTTATG 59.389 52.381 28.79 3.88 39.88 1.90
28 29 2.575532 GCAGGCTAGCATGGTTTATGA 58.424 47.619 28.79 0.00 39.21 2.15
29 30 2.551459 GCAGGCTAGCATGGTTTATGAG 59.449 50.000 28.79 2.38 39.21 2.90
30 31 3.144506 CAGGCTAGCATGGTTTATGAGG 58.855 50.000 21.42 0.00 39.21 3.86
31 32 2.780010 AGGCTAGCATGGTTTATGAGGT 59.220 45.455 18.24 0.00 39.21 3.85
32 33 3.142174 GGCTAGCATGGTTTATGAGGTC 58.858 50.000 18.24 0.00 39.21 3.85
33 34 3.433598 GGCTAGCATGGTTTATGAGGTCA 60.434 47.826 18.24 0.00 39.21 4.02
34 35 3.561725 GCTAGCATGGTTTATGAGGTCAC 59.438 47.826 10.63 0.00 39.21 3.67
35 36 3.004752 AGCATGGTTTATGAGGTCACC 57.995 47.619 0.00 0.00 39.21 4.02
36 37 1.670811 GCATGGTTTATGAGGTCACCG 59.329 52.381 0.00 0.00 39.21 4.94
37 38 2.939640 GCATGGTTTATGAGGTCACCGT 60.940 50.000 0.00 0.00 39.21 4.83
38 39 3.343617 CATGGTTTATGAGGTCACCGTT 58.656 45.455 0.00 0.00 39.21 4.44
39 40 4.509616 CATGGTTTATGAGGTCACCGTTA 58.490 43.478 0.00 0.00 39.21 3.18
40 41 4.620589 TGGTTTATGAGGTCACCGTTAA 57.379 40.909 0.00 0.00 31.24 2.01
41 42 4.571919 TGGTTTATGAGGTCACCGTTAAG 58.428 43.478 0.00 0.00 31.24 1.85
42 43 4.040706 TGGTTTATGAGGTCACCGTTAAGT 59.959 41.667 0.00 0.00 31.24 2.24
43 44 5.245751 TGGTTTATGAGGTCACCGTTAAGTA 59.754 40.000 0.00 0.00 31.24 2.24
44 45 6.070653 TGGTTTATGAGGTCACCGTTAAGTAT 60.071 38.462 0.00 0.00 31.24 2.12
45 46 7.123997 TGGTTTATGAGGTCACCGTTAAGTATA 59.876 37.037 0.00 0.00 31.24 1.47
46 47 7.650903 GGTTTATGAGGTCACCGTTAAGTATAG 59.349 40.741 0.00 0.00 0.00 1.31
47 48 5.786264 ATGAGGTCACCGTTAAGTATAGG 57.214 43.478 0.00 0.00 0.00 2.57
48 49 3.956199 TGAGGTCACCGTTAAGTATAGGG 59.044 47.826 0.00 0.00 0.00 3.53
49 50 3.956848 GAGGTCACCGTTAAGTATAGGGT 59.043 47.826 0.00 0.00 0.00 4.34
50 51 4.356436 AGGTCACCGTTAAGTATAGGGTT 58.644 43.478 0.00 0.00 0.00 4.11
51 52 5.518865 AGGTCACCGTTAAGTATAGGGTTA 58.481 41.667 0.00 0.00 0.00 2.85
52 53 5.595952 AGGTCACCGTTAAGTATAGGGTTAG 59.404 44.000 0.00 0.00 0.00 2.34
53 54 5.221322 GGTCACCGTTAAGTATAGGGTTAGG 60.221 48.000 0.00 0.00 0.00 2.69
108 109 4.431809 TGGTTTGTTTGAGTTTGCATCAG 58.568 39.130 0.00 0.00 0.00 2.90
113 114 7.437862 GGTTTGTTTGAGTTTGCATCAGATTTA 59.562 33.333 0.00 0.00 0.00 1.40
141 146 8.920665 TCAATTTAAATTACGTTTGGAATGCAG 58.079 29.630 12.98 0.00 0.00 4.41
142 147 8.707839 CAATTTAAATTACGTTTGGAATGCAGT 58.292 29.630 12.98 0.00 0.00 4.40
143 148 8.825667 ATTTAAATTACGTTTGGAATGCAGTT 57.174 26.923 0.00 0.00 0.00 3.16
159 164 2.483876 CAGTTGGACATATGCGGGTAG 58.516 52.381 1.58 0.00 0.00 3.18
178 183 2.728007 AGCTTTAAATGACTGCCTCCC 58.272 47.619 0.00 0.00 0.00 4.30
181 186 0.742990 TTAAATGACTGCCTCCCGCG 60.743 55.000 0.00 0.00 42.08 6.46
183 188 2.748058 AAATGACTGCCTCCCGCGTT 62.748 55.000 4.92 0.00 42.08 4.84
184 189 3.665675 ATGACTGCCTCCCGCGTTC 62.666 63.158 4.92 0.00 42.08 3.95
185 190 4.373116 GACTGCCTCCCGCGTTCA 62.373 66.667 4.92 0.00 42.08 3.18
186 191 3.665675 GACTGCCTCCCGCGTTCAT 62.666 63.158 4.92 0.00 42.08 2.57
187 192 3.197790 CTGCCTCCCGCGTTCATG 61.198 66.667 4.92 0.00 42.08 3.07
190 195 2.579201 CCTCCCGCGTTCATGTCT 59.421 61.111 4.92 0.00 0.00 3.41
195 200 2.809174 CGCGTTCATGTCTGCGGA 60.809 61.111 16.47 0.00 46.31 5.54
200 205 1.021390 GTTCATGTCTGCGGACTGGG 61.021 60.000 25.54 14.81 42.54 4.45
206 211 3.399181 CTGCGGACTGGGCCCTTA 61.399 66.667 25.70 1.41 0.00 2.69
208 213 2.270874 CTGCGGACTGGGCCCTTATT 62.271 60.000 25.70 3.68 0.00 1.40
209 214 0.983905 TGCGGACTGGGCCCTTATTA 60.984 55.000 25.70 0.00 0.00 0.98
211 216 1.882352 GCGGACTGGGCCCTTATTATG 60.882 57.143 25.70 7.99 0.00 1.90
213 218 2.062636 GGACTGGGCCCTTATTATGGA 58.937 52.381 25.70 0.00 0.00 3.41
214 219 2.224793 GGACTGGGCCCTTATTATGGAC 60.225 54.545 25.70 2.48 0.00 4.02
220 228 2.039879 GGCCCTTATTATGGACGGATGT 59.960 50.000 0.00 0.00 0.00 3.06
222 230 3.244422 GCCCTTATTATGGACGGATGTGA 60.244 47.826 0.00 0.00 0.00 3.58
224 232 5.338056 GCCCTTATTATGGACGGATGTGATA 60.338 44.000 0.00 0.00 0.00 2.15
227 235 7.147655 CCCTTATTATGGACGGATGTGATATCT 60.148 40.741 3.98 0.00 0.00 1.98
233 241 5.299949 TGGACGGATGTGATATCTGATTTG 58.700 41.667 4.95 0.00 0.00 2.32
234 242 4.153117 GGACGGATGTGATATCTGATTTGC 59.847 45.833 4.95 0.00 0.00 3.68
238 246 2.849942 TGTGATATCTGATTTGCGGGG 58.150 47.619 3.98 0.00 0.00 5.73
239 247 1.537202 GTGATATCTGATTTGCGGGGC 59.463 52.381 3.98 0.00 0.00 5.80
242 250 0.819259 TATCTGATTTGCGGGGCAGC 60.819 55.000 0.00 0.00 40.61 5.25
243 251 2.842188 ATCTGATTTGCGGGGCAGCA 62.842 55.000 2.71 2.71 46.54 4.41
249 257 2.674138 TGCGGGGCAGCATTAGAA 59.326 55.556 2.71 0.00 42.92 2.10
253 261 1.392589 CGGGGCAGCATTAGAAATGT 58.607 50.000 0.00 0.00 0.00 2.71
284 292 2.480416 CGGACTAGCATGGACTGAGTTC 60.480 54.545 0.00 0.00 0.00 3.01
313 434 0.981183 AATAGTGTGTCCGCTTCCCA 59.019 50.000 0.00 0.00 32.54 4.37
314 435 0.537188 ATAGTGTGTCCGCTTCCCAG 59.463 55.000 0.00 0.00 32.54 4.45
356 478 2.758089 CGTGGACGGTCTACCTCGG 61.758 68.421 17.47 1.52 38.79 4.63
378 500 2.125753 CCACTCAGCAGCGTCTCC 60.126 66.667 0.00 0.00 0.00 3.71
437 620 0.934496 TCTTGCGTCCGTTTCTGTTG 59.066 50.000 0.00 0.00 0.00 3.33
438 621 0.041312 CTTGCGTCCGTTTCTGTTGG 60.041 55.000 0.00 0.00 0.00 3.77
439 622 0.745128 TTGCGTCCGTTTCTGTTGGT 60.745 50.000 0.00 0.00 0.00 3.67
440 623 1.278637 GCGTCCGTTTCTGTTGGTG 59.721 57.895 0.00 0.00 0.00 4.17
441 624 1.433837 GCGTCCGTTTCTGTTGGTGT 61.434 55.000 0.00 0.00 0.00 4.16
442 625 0.580104 CGTCCGTTTCTGTTGGTGTC 59.420 55.000 0.00 0.00 0.00 3.67
443 626 1.805120 CGTCCGTTTCTGTTGGTGTCT 60.805 52.381 0.00 0.00 0.00 3.41
444 627 2.285977 GTCCGTTTCTGTTGGTGTCTT 58.714 47.619 0.00 0.00 0.00 3.01
471 670 0.107017 CCAGCCAGTCCCACCTAATG 60.107 60.000 0.00 0.00 0.00 1.90
472 671 0.911769 CAGCCAGTCCCACCTAATGA 59.088 55.000 0.00 0.00 0.00 2.57
598 803 2.457598 TGCGTGGAGAGGAGATAACTT 58.542 47.619 0.00 0.00 0.00 2.66
613 818 9.838339 AGGAGATAACTTATAATCACAAGTTGG 57.162 33.333 7.96 0.00 43.13 3.77
670 881 0.318445 CCGGTTTACTCGCCCGATAG 60.318 60.000 0.00 0.00 44.41 2.08
855 1070 2.561569 GGTGATTATCCACAACCCGAG 58.438 52.381 0.00 0.00 38.74 4.63
879 1095 1.348036 GGGCGGGATTAGAGCTGTAAT 59.652 52.381 15.50 15.50 0.00 1.89
895 1111 4.443034 GCTGTAATGGGAGACGGATAAGTT 60.443 45.833 0.00 0.00 0.00 2.66
986 1208 1.152839 TTTATAAGCCAGCCCGCCC 60.153 57.895 0.00 0.00 0.00 6.13
1035 1257 2.622942 CAGCTTTCCTCTCTAGCTCGAT 59.377 50.000 0.00 0.00 43.04 3.59
1377 1611 0.179089 TTTGCGTTTGTTGCCATGCT 60.179 45.000 0.00 0.00 0.00 3.79
1410 1668 1.445871 GTTAGATCCGGCGTTTGGTT 58.554 50.000 6.01 0.00 0.00 3.67
1433 1691 4.554036 GGATCTGGTGCGCTCCCC 62.554 72.222 24.73 14.94 0.00 4.81
1583 1881 5.611796 TTTTCTCGGTCTTGAATGTGATG 57.388 39.130 0.00 0.00 0.00 3.07
1613 1911 2.612672 GCGGGTAGGAAATCTTAGTTGC 59.387 50.000 0.00 0.00 0.00 4.17
1620 1918 6.017852 GGTAGGAAATCTTAGTTGCTGCATAC 60.018 42.308 1.84 5.03 32.06 2.39
1650 1948 1.337703 CAAAAGTGGTAGCAGCAGCAA 59.662 47.619 3.17 0.00 45.49 3.91
1651 1949 1.915141 AAAGTGGTAGCAGCAGCAAT 58.085 45.000 3.17 0.00 45.49 3.56
1652 1950 1.915141 AAGTGGTAGCAGCAGCAATT 58.085 45.000 3.17 0.00 45.49 2.32
1689 1987 2.214216 CCGTGGGAGTGGAAGTGGA 61.214 63.158 0.00 0.00 0.00 4.02
1899 2213 3.599285 CTTTGGCCCCGTCGCTGTA 62.599 63.158 0.00 0.00 0.00 2.74
1913 2227 1.065928 CTGTAAGGTAGCCGCTCGG 59.934 63.158 3.56 3.56 38.57 4.63
2021 2371 2.808933 GCGGCTATTATTACCTGCACCA 60.809 50.000 0.00 0.00 0.00 4.17
2022 2372 3.674997 CGGCTATTATTACCTGCACCAT 58.325 45.455 0.00 0.00 0.00 3.55
2038 2388 3.393800 CACCATAGGTCATTGATCCGTC 58.606 50.000 0.00 0.00 31.02 4.79
2044 2394 3.545703 AGGTCATTGATCCGTCCAAATC 58.454 45.455 0.00 0.00 0.00 2.17
2051 2402 3.517602 TGATCCGTCCAAATCTAACACG 58.482 45.455 0.00 0.00 0.00 4.49
2077 2428 4.130118 CCACTCTAACACAAGAAGCAACT 58.870 43.478 0.00 0.00 0.00 3.16
2078 2429 5.069914 TCCACTCTAACACAAGAAGCAACTA 59.930 40.000 0.00 0.00 0.00 2.24
2153 2507 0.374758 CTCATTCGGTCGGTGCAATG 59.625 55.000 0.00 0.00 0.00 2.82
2158 2512 1.934589 TCGGTCGGTGCAATGAATAG 58.065 50.000 0.00 0.00 0.00 1.73
2161 2515 3.069016 TCGGTCGGTGCAATGAATAGTAT 59.931 43.478 0.00 0.00 0.00 2.12
2162 2516 3.807622 CGGTCGGTGCAATGAATAGTATT 59.192 43.478 0.00 0.00 0.00 1.89
2163 2517 4.318760 CGGTCGGTGCAATGAATAGTATTG 60.319 45.833 0.00 0.00 38.30 1.90
2164 2518 4.814234 GGTCGGTGCAATGAATAGTATTGA 59.186 41.667 0.00 0.00 37.65 2.57
2165 2519 5.277345 GGTCGGTGCAATGAATAGTATTGAC 60.277 44.000 0.00 0.00 37.65 3.18
2168 2522 6.597672 TCGGTGCAATGAATAGTATTGACTTT 59.402 34.615 0.00 0.00 37.65 2.66
2170 2524 7.429340 CGGTGCAATGAATAGTATTGACTTTTC 59.571 37.037 0.00 2.48 41.47 2.29
2386 2789 4.147449 TCGGCCGACATGCTCCTG 62.147 66.667 27.28 0.00 0.00 3.86
2542 2945 1.154150 CTCGTACGACCCCAACGTC 60.154 63.158 15.28 0.00 43.62 4.34
2632 3035 0.109272 TCATCAAGGTGAGCGACGAC 60.109 55.000 0.00 0.00 0.00 4.34
2883 3289 7.229581 ACTCCATCTTCTACGTAAGAAAACT 57.770 36.000 4.94 0.00 43.66 2.66
2886 3292 9.635520 CTCCATCTTCTACGTAAGAAAACTAAA 57.364 33.333 4.94 0.00 43.66 1.85
2898 3304 8.388103 CGTAAGAAAACTAAATCATCACCGATT 58.612 33.333 0.00 0.00 43.02 3.34
2904 3333 7.721286 AACTAAATCATCACCGATTCTGATC 57.279 36.000 0.00 0.00 34.49 2.92
2918 3350 6.718454 GATTCTGATCGAACTCCATTATGG 57.282 41.667 4.57 4.57 34.77 2.74
2947 3396 5.463286 TGTTGCTAATGATGCTGTTTTCTG 58.537 37.500 0.00 0.00 0.00 3.02
2969 3418 1.667724 GTGATTGGACAGAATGAGGCG 59.332 52.381 0.00 0.00 39.69 5.52
3102 3551 1.811679 GGCAGCAACTAGAGACGCC 60.812 63.158 0.00 0.00 0.00 5.68
3189 3653 5.652744 ATTGAGTTTAGTTCGTGTGTGTC 57.347 39.130 0.00 0.00 0.00 3.67
3248 3714 1.137872 TGTGTGGTGATTTTGGTTGCC 59.862 47.619 0.00 0.00 0.00 4.52
3361 3958 3.187227 GCTTGAGTTTCTTTCTGATGCGA 59.813 43.478 0.00 0.00 0.00 5.10
3362 3959 4.142730 GCTTGAGTTTCTTTCTGATGCGAT 60.143 41.667 0.00 0.00 0.00 4.58
3363 3960 4.934075 TGAGTTTCTTTCTGATGCGATG 57.066 40.909 0.00 0.00 0.00 3.84
3364 3961 3.686241 TGAGTTTCTTTCTGATGCGATGG 59.314 43.478 0.00 0.00 0.00 3.51
3365 3962 3.679389 AGTTTCTTTCTGATGCGATGGT 58.321 40.909 0.00 0.00 0.00 3.55
3366 3963 3.686726 AGTTTCTTTCTGATGCGATGGTC 59.313 43.478 0.00 0.00 0.00 4.02
3367 3964 3.616956 TTCTTTCTGATGCGATGGTCT 57.383 42.857 0.00 0.00 0.00 3.85
3368 3965 3.170791 TCTTTCTGATGCGATGGTCTC 57.829 47.619 0.00 0.00 0.00 3.36
3369 3966 2.762887 TCTTTCTGATGCGATGGTCTCT 59.237 45.455 0.00 0.00 0.00 3.10
3370 3967 2.591571 TTCTGATGCGATGGTCTCTG 57.408 50.000 0.00 0.00 0.00 3.35
3371 3968 0.749049 TCTGATGCGATGGTCTCTGG 59.251 55.000 0.00 0.00 0.00 3.86
3372 3969 0.463204 CTGATGCGATGGTCTCTGGT 59.537 55.000 0.00 0.00 0.00 4.00
3373 3970 0.904649 TGATGCGATGGTCTCTGGTT 59.095 50.000 0.00 0.00 0.00 3.67
3374 3971 1.134699 TGATGCGATGGTCTCTGGTTC 60.135 52.381 0.00 0.00 0.00 3.62
3375 3972 0.904649 ATGCGATGGTCTCTGGTTCA 59.095 50.000 0.00 0.00 0.00 3.18
3376 3973 0.904649 TGCGATGGTCTCTGGTTCAT 59.095 50.000 0.00 0.00 0.00 2.57
3377 3974 2.107366 TGCGATGGTCTCTGGTTCATA 58.893 47.619 0.00 0.00 0.00 2.15
3378 3975 2.499693 TGCGATGGTCTCTGGTTCATAA 59.500 45.455 0.00 0.00 0.00 1.90
3379 3976 3.126831 GCGATGGTCTCTGGTTCATAAG 58.873 50.000 0.00 0.00 0.00 1.73
3380 3977 3.430929 GCGATGGTCTCTGGTTCATAAGT 60.431 47.826 0.00 0.00 0.00 2.24
3381 3978 4.759782 CGATGGTCTCTGGTTCATAAGTT 58.240 43.478 0.00 0.00 0.00 2.66
3382 3979 5.178797 CGATGGTCTCTGGTTCATAAGTTT 58.821 41.667 0.00 0.00 0.00 2.66
3383 3980 5.643777 CGATGGTCTCTGGTTCATAAGTTTT 59.356 40.000 0.00 0.00 0.00 2.43
3384 3981 6.149474 CGATGGTCTCTGGTTCATAAGTTTTT 59.851 38.462 0.00 0.00 0.00 1.94
3385 3982 6.633500 TGGTCTCTGGTTCATAAGTTTTTG 57.367 37.500 0.00 0.00 0.00 2.44
3386 3983 5.009610 TGGTCTCTGGTTCATAAGTTTTTGC 59.990 40.000 0.00 0.00 0.00 3.68
3387 3984 5.147162 GTCTCTGGTTCATAAGTTTTTGCG 58.853 41.667 0.00 0.00 0.00 4.85
3388 3985 3.896122 TCTGGTTCATAAGTTTTTGCGC 58.104 40.909 0.00 0.00 0.00 6.09
3389 3986 2.986479 CTGGTTCATAAGTTTTTGCGCC 59.014 45.455 4.18 0.00 0.00 6.53
3390 3987 2.362397 TGGTTCATAAGTTTTTGCGCCA 59.638 40.909 4.18 0.00 0.00 5.69
3391 3988 3.006323 TGGTTCATAAGTTTTTGCGCCAT 59.994 39.130 4.18 0.00 0.00 4.40
3392 3989 3.612423 GGTTCATAAGTTTTTGCGCCATC 59.388 43.478 4.18 0.00 0.00 3.51
3393 3990 4.233789 GTTCATAAGTTTTTGCGCCATCA 58.766 39.130 4.18 0.00 0.00 3.07
3394 3991 4.095410 TCATAAGTTTTTGCGCCATCAG 57.905 40.909 4.18 0.00 0.00 2.90
3395 3992 3.505680 TCATAAGTTTTTGCGCCATCAGT 59.494 39.130 4.18 0.00 0.00 3.41
3396 3993 4.697828 TCATAAGTTTTTGCGCCATCAGTA 59.302 37.500 4.18 0.00 0.00 2.74
3397 3994 5.182190 TCATAAGTTTTTGCGCCATCAGTAA 59.818 36.000 4.18 0.00 0.00 2.24
3398 3995 4.519540 AAGTTTTTGCGCCATCAGTAAT 57.480 36.364 4.18 0.00 0.00 1.89
3399 3996 3.836949 AGTTTTTGCGCCATCAGTAATG 58.163 40.909 4.18 0.00 34.93 1.90
3400 3997 3.255642 AGTTTTTGCGCCATCAGTAATGT 59.744 39.130 4.18 0.00 33.13 2.71
3401 3998 3.932545 TTTTGCGCCATCAGTAATGTT 57.067 38.095 4.18 0.00 33.13 2.71
3402 3999 3.932545 TTTGCGCCATCAGTAATGTTT 57.067 38.095 4.18 0.00 33.13 2.83
3403 4000 3.932545 TTGCGCCATCAGTAATGTTTT 57.067 38.095 4.18 0.00 33.13 2.43
3404 4001 3.485947 TGCGCCATCAGTAATGTTTTC 57.514 42.857 4.18 0.00 33.13 2.29
3405 4002 2.816672 TGCGCCATCAGTAATGTTTTCA 59.183 40.909 4.18 0.00 33.13 2.69
3406 4003 3.443329 TGCGCCATCAGTAATGTTTTCAT 59.557 39.130 4.18 0.00 43.05 2.57
3407 4004 4.637977 TGCGCCATCAGTAATGTTTTCATA 59.362 37.500 4.18 0.00 39.94 2.15
3408 4005 5.124617 TGCGCCATCAGTAATGTTTTCATAA 59.875 36.000 4.18 0.00 39.94 1.90
3409 4006 6.183360 TGCGCCATCAGTAATGTTTTCATAAT 60.183 34.615 4.18 0.00 39.94 1.28
3410 4007 6.697019 GCGCCATCAGTAATGTTTTCATAATT 59.303 34.615 0.00 0.00 39.94 1.40
3411 4008 7.860373 GCGCCATCAGTAATGTTTTCATAATTA 59.140 33.333 0.00 0.00 39.94 1.40
3412 4009 9.729023 CGCCATCAGTAATGTTTTCATAATTAA 57.271 29.630 0.00 0.00 39.94 1.40
3430 4027 9.855361 CATAATTAACAAGAGCTTCATTCTACG 57.145 33.333 0.00 0.00 0.00 3.51
3431 4028 7.907214 AATTAACAAGAGCTTCATTCTACGT 57.093 32.000 0.00 0.00 0.00 3.57
3432 4029 7.907214 ATTAACAAGAGCTTCATTCTACGTT 57.093 32.000 0.00 0.00 0.00 3.99
3433 4030 7.724305 TTAACAAGAGCTTCATTCTACGTTT 57.276 32.000 0.00 0.00 0.00 3.60
3434 4031 6.619801 AACAAGAGCTTCATTCTACGTTTT 57.380 33.333 0.00 0.00 0.00 2.43
3435 4032 6.619801 ACAAGAGCTTCATTCTACGTTTTT 57.380 33.333 0.00 0.00 0.00 1.94
3436 4033 6.659776 ACAAGAGCTTCATTCTACGTTTTTC 58.340 36.000 0.00 0.00 0.00 2.29
3437 4034 6.483640 ACAAGAGCTTCATTCTACGTTTTTCT 59.516 34.615 0.00 0.00 0.00 2.52
3438 4035 6.473397 AGAGCTTCATTCTACGTTTTTCTG 57.527 37.500 0.00 0.00 0.00 3.02
3439 4036 6.223852 AGAGCTTCATTCTACGTTTTTCTGA 58.776 36.000 0.00 0.00 0.00 3.27
3440 4037 6.706270 AGAGCTTCATTCTACGTTTTTCTGAA 59.294 34.615 0.00 0.00 0.00 3.02
3441 4038 7.226720 AGAGCTTCATTCTACGTTTTTCTGAAA 59.773 33.333 0.00 0.00 0.00 2.69
3442 4039 7.132863 AGCTTCATTCTACGTTTTTCTGAAAC 58.867 34.615 1.58 0.00 0.00 2.78
3443 4040 6.910433 GCTTCATTCTACGTTTTTCTGAAACA 59.090 34.615 1.58 0.00 0.00 2.83
3444 4041 7.431084 GCTTCATTCTACGTTTTTCTGAAACAA 59.569 33.333 1.58 0.00 0.00 2.83
3445 4042 9.450807 CTTCATTCTACGTTTTTCTGAAACAAT 57.549 29.630 1.58 0.00 0.00 2.71
3446 4043 8.781067 TCATTCTACGTTTTTCTGAAACAATG 57.219 30.769 1.58 8.49 0.00 2.82
3447 4044 8.402472 TCATTCTACGTTTTTCTGAAACAATGT 58.598 29.630 18.10 18.10 0.00 2.71
3448 4045 9.019764 CATTCTACGTTTTTCTGAAACAATGTT 57.980 29.630 18.72 0.00 0.00 2.71
3449 4046 8.973835 TTCTACGTTTTTCTGAAACAATGTTT 57.026 26.923 11.55 11.55 0.00 2.83
3450 4047 8.973835 TCTACGTTTTTCTGAAACAATGTTTT 57.026 26.923 13.00 0.00 0.00 2.43
3451 4048 9.068008 TCTACGTTTTTCTGAAACAATGTTTTC 57.932 29.630 13.00 7.02 36.23 2.29
3465 4062 3.924114 TGTTTTCTGGTCTCTGGTTCA 57.076 42.857 0.00 0.00 0.00 3.18
3472 4069 5.407407 TCTGGTCTCTGGTTCATAAGTTC 57.593 43.478 0.00 0.00 0.00 3.01
3484 4081 4.729227 TCATAAGTTCGCACCATCAGTA 57.271 40.909 0.00 0.00 0.00 2.74
3486 4083 5.483811 TCATAAGTTCGCACCATCAGTAAA 58.516 37.500 0.00 0.00 0.00 2.01
3622 4243 7.325660 TCAATGTTTTCTTATCTGATCAGGC 57.674 36.000 22.42 3.31 0.00 4.85
3624 4245 6.939132 ATGTTTTCTTATCTGATCAGGCTG 57.061 37.500 22.42 8.58 0.00 4.85
3626 4247 5.045651 TGTTTTCTTATCTGATCAGGCTGGA 60.046 40.000 22.42 12.74 0.00 3.86
3645 4272 2.508526 GAGTTCACTGTTGAGCCCATT 58.491 47.619 0.00 0.00 33.54 3.16
3664 4305 6.976925 GCCCATTATTCTGTTGAAATCTTCAG 59.023 38.462 0.00 0.00 41.38 3.02
3687 4328 4.079253 TCAACCTTACCTCTTTTGCATCC 58.921 43.478 0.00 0.00 0.00 3.51
3710 4351 1.583054 CCTCAAAGGCCTATGCGTAC 58.417 55.000 5.16 0.00 38.85 3.67
3718 4359 3.991367 AGGCCTATGCGTACAGAAATAC 58.009 45.455 1.29 0.00 38.85 1.89
3719 4360 3.641906 AGGCCTATGCGTACAGAAATACT 59.358 43.478 1.29 0.00 38.85 2.12
3722 4363 4.621886 GCCTATGCGTACAGAAATACTAGC 59.378 45.833 0.00 0.00 0.00 3.42
3723 4364 5.769367 CCTATGCGTACAGAAATACTAGCA 58.231 41.667 0.00 0.00 37.77 3.49
3725 4366 4.976224 TGCGTACAGAAATACTAGCAGA 57.024 40.909 0.00 0.00 0.00 4.26
3726 4367 4.921547 TGCGTACAGAAATACTAGCAGAG 58.078 43.478 0.00 0.00 0.00 3.35
3727 4368 4.398358 TGCGTACAGAAATACTAGCAGAGT 59.602 41.667 0.00 0.00 42.69 3.24
3728 4369 5.587443 TGCGTACAGAAATACTAGCAGAGTA 59.413 40.000 1.41 1.41 44.87 2.59
3729 4370 5.908499 GCGTACAGAAATACTAGCAGAGTAC 59.092 44.000 0.96 0.00 43.56 2.73
3732 4373 4.338682 ACAGAAATACTAGCAGAGTACCCG 59.661 45.833 0.96 0.00 43.56 5.28
3733 4374 3.318557 AGAAATACTAGCAGAGTACCCGC 59.681 47.826 0.96 0.00 43.56 6.13
3734 4375 2.359981 ATACTAGCAGAGTACCCGCA 57.640 50.000 0.96 0.00 43.56 5.69
3735 4376 2.359981 TACTAGCAGAGTACCCGCAT 57.640 50.000 0.00 0.00 39.81 4.73
3736 4377 2.359981 ACTAGCAGAGTACCCGCATA 57.640 50.000 0.00 0.00 36.27 3.14
3738 4379 0.959553 TAGCAGAGTACCCGCATAGC 59.040 55.000 2.10 0.00 0.00 2.97
3739 4380 1.043116 AGCAGAGTACCCGCATAGCA 61.043 55.000 2.10 0.00 0.00 3.49
3740 4381 0.876342 GCAGAGTACCCGCATAGCAC 60.876 60.000 0.00 0.00 0.00 4.40
3741 4382 0.595053 CAGAGTACCCGCATAGCACG 60.595 60.000 0.00 0.00 0.00 5.34
3742 4383 1.035932 AGAGTACCCGCATAGCACGT 61.036 55.000 0.00 0.00 0.00 4.49
3766 4408 0.456221 AGCTCGAACCATACTGACCG 59.544 55.000 0.00 0.00 0.00 4.79
3810 4474 7.591795 CCTAACTATTGCTAGACAAGATACACG 59.408 40.741 0.00 0.00 42.87 4.49
3849 4513 6.624861 GCCTATCTGATCTTTCTACAGGATCG 60.625 46.154 0.00 0.00 38.79 3.69
3893 4559 3.069872 TGGCACAAAAGAAATGATGCTGT 59.930 39.130 0.00 0.00 31.92 4.40
3956 4624 2.289820 CCATTGCATCCATTCGTCTCAG 59.710 50.000 0.00 0.00 0.00 3.35
3966 4634 4.020218 TCCATTCGTCTCAGACTTTCCATT 60.020 41.667 2.61 0.00 0.00 3.16
4022 4694 3.031736 ACCGCAGTACCATCACTAGAAT 58.968 45.455 0.00 0.00 0.00 2.40
4035 4707 7.457218 ACCATCACTAGAATCAGATATCACCAT 59.543 37.037 5.32 0.00 0.00 3.55
4036 4708 7.980662 CCATCACTAGAATCAGATATCACCATC 59.019 40.741 5.32 0.00 0.00 3.51
4041 6272 9.269494 ACTAGAATCAGATATCACCATCATCAT 57.731 33.333 5.32 0.00 0.00 2.45
4052 6283 6.121776 TCACCATCATCATCATCATCATCA 57.878 37.500 0.00 0.00 0.00 3.07
4094 6325 1.209383 CAGAGGAACGACGAAGCGA 59.791 57.895 0.00 0.00 34.83 4.93
4158 6389 3.845259 GGATGTACCTGGCGCCGA 61.845 66.667 23.90 10.31 35.41 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.559063 ATGCTAGCCTGCCCAGCG 62.559 66.667 13.29 0.00 38.15 5.18
3 4 2.905880 CATGCTAGCCTGCCCAGC 60.906 66.667 13.29 6.43 35.82 4.85
6 7 0.106719 TAAACCATGCTAGCCTGCCC 60.107 55.000 13.29 0.00 0.00 5.36
7 8 1.610522 CATAAACCATGCTAGCCTGCC 59.389 52.381 13.29 0.00 0.00 4.85
8 9 2.551459 CTCATAAACCATGCTAGCCTGC 59.449 50.000 13.29 0.00 34.35 4.85
9 10 3.144506 CCTCATAAACCATGCTAGCCTG 58.855 50.000 13.29 12.92 34.35 4.85
10 11 2.780010 ACCTCATAAACCATGCTAGCCT 59.220 45.455 13.29 0.00 34.35 4.58
11 12 3.142174 GACCTCATAAACCATGCTAGCC 58.858 50.000 13.29 0.00 34.35 3.93
12 13 3.561725 GTGACCTCATAAACCATGCTAGC 59.438 47.826 8.10 8.10 34.35 3.42
13 14 4.130118 GGTGACCTCATAAACCATGCTAG 58.870 47.826 0.00 0.00 34.35 3.42
14 15 3.431626 CGGTGACCTCATAAACCATGCTA 60.432 47.826 0.00 0.00 34.35 3.49
15 16 2.680805 CGGTGACCTCATAAACCATGCT 60.681 50.000 0.00 0.00 34.35 3.79
16 17 1.670811 CGGTGACCTCATAAACCATGC 59.329 52.381 0.00 0.00 34.35 4.06
17 18 2.985896 ACGGTGACCTCATAAACCATG 58.014 47.619 0.00 0.00 35.81 3.66
18 19 3.713826 AACGGTGACCTCATAAACCAT 57.286 42.857 0.00 0.00 32.69 3.55
19 20 4.040706 ACTTAACGGTGACCTCATAAACCA 59.959 41.667 0.00 0.00 32.69 3.67
20 21 4.572909 ACTTAACGGTGACCTCATAAACC 58.427 43.478 0.00 0.00 0.00 3.27
21 22 7.650903 CCTATACTTAACGGTGACCTCATAAAC 59.349 40.741 0.00 0.00 0.00 2.01
22 23 7.201938 CCCTATACTTAACGGTGACCTCATAAA 60.202 40.741 0.00 0.00 0.00 1.40
23 24 6.266103 CCCTATACTTAACGGTGACCTCATAA 59.734 42.308 0.00 0.00 0.00 1.90
24 25 5.771666 CCCTATACTTAACGGTGACCTCATA 59.228 44.000 0.00 0.00 0.00 2.15
25 26 4.587684 CCCTATACTTAACGGTGACCTCAT 59.412 45.833 0.00 0.00 0.00 2.90
26 27 3.956199 CCCTATACTTAACGGTGACCTCA 59.044 47.826 0.00 0.00 0.00 3.86
27 28 3.956848 ACCCTATACTTAACGGTGACCTC 59.043 47.826 0.00 0.00 0.00 3.85
28 29 3.986435 ACCCTATACTTAACGGTGACCT 58.014 45.455 0.00 0.00 0.00 3.85
29 30 4.743057 AACCCTATACTTAACGGTGACC 57.257 45.455 0.00 0.00 0.00 4.02
30 31 5.360999 ACCTAACCCTATACTTAACGGTGAC 59.639 44.000 0.00 0.00 0.00 3.67
31 32 5.518865 ACCTAACCCTATACTTAACGGTGA 58.481 41.667 0.00 0.00 0.00 4.02
32 33 5.859205 ACCTAACCCTATACTTAACGGTG 57.141 43.478 0.00 0.00 0.00 4.94
33 34 7.971368 TTTACCTAACCCTATACTTAACGGT 57.029 36.000 0.00 0.00 0.00 4.83
82 83 3.256879 TGCAAACTCAAACAAACCAGACA 59.743 39.130 0.00 0.00 0.00 3.41
90 91 9.195411 GATTAAATCTGATGCAAACTCAAACAA 57.805 29.630 0.00 0.00 0.00 2.83
94 95 9.932207 AATTGATTAAATCTGATGCAAACTCAA 57.068 25.926 0.00 0.00 0.00 3.02
122 123 4.987912 CCAACTGCATTCCAAACGTAATTT 59.012 37.500 0.00 0.00 0.00 1.82
134 139 2.287188 CCGCATATGTCCAACTGCATTC 60.287 50.000 4.29 0.00 34.29 2.67
141 146 1.202651 AGCTACCCGCATATGTCCAAC 60.203 52.381 4.29 0.00 42.61 3.77
142 147 1.128200 AGCTACCCGCATATGTCCAA 58.872 50.000 4.29 0.00 42.61 3.53
143 148 1.128200 AAGCTACCCGCATATGTCCA 58.872 50.000 4.29 0.00 42.61 4.02
159 164 1.401905 CGGGAGGCAGTCATTTAAAGC 59.598 52.381 0.00 0.00 0.00 3.51
160 165 1.401905 GCGGGAGGCAGTCATTTAAAG 59.598 52.381 0.00 0.00 42.87 1.85
164 169 2.436646 CGCGGGAGGCAGTCATTT 60.437 61.111 0.00 0.00 43.84 2.32
165 170 3.254024 AACGCGGGAGGCAGTCATT 62.254 57.895 12.47 0.00 43.84 2.57
169 174 3.706373 ATGAACGCGGGAGGCAGT 61.706 61.111 12.47 0.00 43.84 4.40
170 175 3.197790 CATGAACGCGGGAGGCAG 61.198 66.667 12.47 0.00 43.84 4.85
171 176 3.950794 GACATGAACGCGGGAGGCA 62.951 63.158 12.47 0.56 43.84 4.75
178 183 2.809174 TCCGCAGACATGAACGCG 60.809 61.111 3.53 3.53 46.96 6.01
181 186 1.021390 CCCAGTCCGCAGACATGAAC 61.021 60.000 0.00 0.00 46.15 3.18
183 188 2.981302 CCCAGTCCGCAGACATGA 59.019 61.111 0.00 0.00 46.15 3.07
184 189 2.821366 GCCCAGTCCGCAGACATG 60.821 66.667 2.32 0.00 46.15 3.21
185 190 4.101448 GGCCCAGTCCGCAGACAT 62.101 66.667 2.32 0.00 46.15 3.06
190 195 0.983905 TAATAAGGGCCCAGTCCGCA 60.984 55.000 27.56 0.00 29.39 5.69
194 199 2.550208 CGTCCATAATAAGGGCCCAGTC 60.550 54.545 27.56 0.00 0.00 3.51
195 200 1.420138 CGTCCATAATAAGGGCCCAGT 59.580 52.381 27.56 14.57 0.00 4.00
200 205 3.074412 CACATCCGTCCATAATAAGGGC 58.926 50.000 0.00 0.00 0.00 5.19
203 208 8.470002 TCAGATATCACATCCGTCCATAATAAG 58.530 37.037 5.32 0.00 0.00 1.73
204 209 8.361169 TCAGATATCACATCCGTCCATAATAA 57.639 34.615 5.32 0.00 0.00 1.40
205 210 7.954666 TCAGATATCACATCCGTCCATAATA 57.045 36.000 5.32 0.00 0.00 0.98
206 211 6.857437 TCAGATATCACATCCGTCCATAAT 57.143 37.500 5.32 0.00 0.00 1.28
208 213 6.857437 AATCAGATATCACATCCGTCCATA 57.143 37.500 5.32 0.00 0.00 2.74
209 214 5.752036 AATCAGATATCACATCCGTCCAT 57.248 39.130 5.32 0.00 0.00 3.41
211 216 4.153117 GCAAATCAGATATCACATCCGTCC 59.847 45.833 5.32 0.00 0.00 4.79
213 218 3.742882 CGCAAATCAGATATCACATCCGT 59.257 43.478 5.32 0.00 0.00 4.69
214 219 3.124128 CCGCAAATCAGATATCACATCCG 59.876 47.826 5.32 0.00 0.00 4.18
220 228 1.142667 TGCCCCGCAAATCAGATATCA 59.857 47.619 5.32 0.00 34.76 2.15
222 230 1.901591 CTGCCCCGCAAATCAGATAT 58.098 50.000 0.00 0.00 38.41 1.63
224 232 2.123428 GCTGCCCCGCAAATCAGAT 61.123 57.895 0.00 0.00 38.41 2.90
227 235 0.682532 TAATGCTGCCCCGCAAATCA 60.683 50.000 0.00 0.00 44.06 2.57
233 241 0.031178 CATTTCTAATGCTGCCCCGC 59.969 55.000 0.00 0.00 0.00 6.13
234 242 1.334869 GACATTTCTAATGCTGCCCCG 59.665 52.381 0.00 0.00 0.00 5.73
238 246 5.277058 CGACTAAGGACATTTCTAATGCTGC 60.277 44.000 0.00 0.00 0.00 5.25
239 247 5.277058 GCGACTAAGGACATTTCTAATGCTG 60.277 44.000 0.00 0.00 0.00 4.41
242 250 4.209288 CCGCGACTAAGGACATTTCTAATG 59.791 45.833 8.23 0.00 0.00 1.90
243 251 4.098960 TCCGCGACTAAGGACATTTCTAAT 59.901 41.667 8.23 0.00 0.00 1.73
246 254 1.822990 TCCGCGACTAAGGACATTTCT 59.177 47.619 8.23 0.00 0.00 2.52
247 255 2.288961 TCCGCGACTAAGGACATTTC 57.711 50.000 8.23 0.00 0.00 2.17
253 261 0.393402 TGCTAGTCCGCGACTAAGGA 60.393 55.000 8.23 6.51 43.36 3.36
284 292 3.302221 CGGACACACTATTTTTATCCGCG 60.302 47.826 0.00 0.00 40.93 6.46
336 458 0.740868 CGAGGTAGACCGTCCACGTA 60.741 60.000 0.00 0.00 42.08 3.57
441 624 0.827925 ACTGGCTGGTCTCACGAAGA 60.828 55.000 0.00 0.00 0.00 2.87
442 625 0.389166 GACTGGCTGGTCTCACGAAG 60.389 60.000 0.00 0.00 33.81 3.79
443 626 1.666011 GACTGGCTGGTCTCACGAA 59.334 57.895 0.00 0.00 33.81 3.85
444 627 2.276116 GGACTGGCTGGTCTCACGA 61.276 63.158 10.03 0.00 36.55 4.35
471 670 6.249035 TGAAACGTATTTGGATCCAACTTC 57.751 37.500 27.04 17.63 35.46 3.01
472 671 5.183140 CCTGAAACGTATTTGGATCCAACTT 59.817 40.000 27.04 18.75 35.46 2.66
541 746 2.169769 CTCCGGATTACTGGCTTTGGTA 59.830 50.000 3.57 0.00 42.00 3.25
580 785 8.024285 GTGATTATAAGTTATCTCCTCTCCACG 58.976 40.741 0.00 0.00 0.00 4.94
588 793 9.614792 ACCAACTTGTGATTATAAGTTATCTCC 57.385 33.333 11.21 0.00 43.60 3.71
613 818 6.935771 TCTCTCTCCGAGTAGTAATTATCCAC 59.064 42.308 0.00 0.00 40.75 4.02
626 837 3.476552 GTGATCTGATCTCTCTCCGAGT 58.523 50.000 17.82 0.00 40.75 4.18
636 847 0.395862 ACCGGGTCGTGATCTGATCT 60.396 55.000 17.82 0.00 0.00 2.75
745 956 3.873679 GAACGGGTTTGGGGGTCCC 62.874 68.421 0.00 0.00 45.71 4.46
749 960 0.468400 TCTTTGAACGGGTTTGGGGG 60.468 55.000 0.00 0.00 0.00 5.40
855 1070 2.280186 CTCTAATCCCGCCCGTGC 60.280 66.667 0.00 0.00 0.00 5.34
866 1081 3.322254 CCGTCTCCCATTACAGCTCTAAT 59.678 47.826 0.00 0.00 0.00 1.73
867 1082 2.693591 CCGTCTCCCATTACAGCTCTAA 59.306 50.000 0.00 0.00 0.00 2.10
879 1095 7.850935 AATTATCTAACTTATCCGTCTCCCA 57.149 36.000 0.00 0.00 0.00 4.37
950 1166 4.410400 GGGGTGAGGGCGAGGTTG 62.410 72.222 0.00 0.00 0.00 3.77
986 1208 3.047877 GTGGGTTTGGAGTCGCGG 61.048 66.667 6.13 0.00 0.00 6.46
1266 1492 1.746615 GAGCTTGGAGATGGCGCAA 60.747 57.895 10.83 0.00 0.00 4.85
1296 1522 1.404986 CGTACCTTTCCGATGAAGGCA 60.405 52.381 10.20 0.00 46.10 4.75
1337 1563 1.202348 AGACAGCGAGAATCATCACGG 60.202 52.381 0.00 0.00 39.61 4.94
1390 1648 0.738412 ACCAAACGCCGGATCTAACG 60.738 55.000 5.05 0.00 0.00 3.18
1391 1649 1.129811 CAACCAAACGCCGGATCTAAC 59.870 52.381 5.05 0.00 0.00 2.34
1410 1668 4.147449 CGCACCAGATCCGAGCCA 62.147 66.667 0.00 0.00 0.00 4.75
1473 1731 2.277120 CGACGATCGGACGGACAC 60.277 66.667 20.98 0.00 36.00 3.67
1565 1863 4.748892 AGTACATCACATTCAAGACCGAG 58.251 43.478 0.00 0.00 0.00 4.63
1583 1881 5.608449 AGATTTCCTACCCGCAAATAGTAC 58.392 41.667 0.00 0.00 0.00 2.73
1613 1911 0.108186 TTGCCTCCAGTCGTATGCAG 60.108 55.000 0.00 0.00 0.00 4.41
1620 1918 0.535102 ACCACTTTTGCCTCCAGTCG 60.535 55.000 0.00 0.00 0.00 4.18
1650 1948 2.943033 GCTGGCCGGCGATAATAATAAT 59.057 45.455 23.45 0.00 0.00 1.28
1651 1949 2.352388 GCTGGCCGGCGATAATAATAA 58.648 47.619 23.45 0.00 0.00 1.40
1652 1950 1.406341 GGCTGGCCGGCGATAATAATA 60.406 52.381 29.93 0.00 0.00 0.98
1689 1987 2.048597 TCGTTTGTCTCGCGCCAT 60.049 55.556 0.00 0.00 0.00 4.40
1876 2190 3.140814 GACGGGGCCAAAGCATCC 61.141 66.667 4.39 0.00 42.56 3.51
1895 2209 1.065928 CCGAGCGGCTACCTTACAG 59.934 63.158 0.60 0.00 0.00 2.74
1913 2227 2.541120 GGCAGTGGCATCATCGAGC 61.541 63.158 12.58 0.00 43.71 5.03
1914 2228 0.463295 AAGGCAGTGGCATCATCGAG 60.463 55.000 20.04 0.00 43.71 4.04
1915 2229 0.035152 AAAGGCAGTGGCATCATCGA 60.035 50.000 20.04 0.00 43.71 3.59
1916 2230 0.099968 CAAAGGCAGTGGCATCATCG 59.900 55.000 20.04 0.00 43.71 3.84
1917 2231 1.180029 ACAAAGGCAGTGGCATCATC 58.820 50.000 20.04 0.00 43.71 2.92
2021 2371 4.771114 TTTGGACGGATCAATGACCTAT 57.229 40.909 0.00 0.00 0.00 2.57
2022 2372 4.408921 AGATTTGGACGGATCAATGACCTA 59.591 41.667 0.00 0.00 0.00 3.08
2038 2388 5.178797 AGAGTGGATTCGTGTTAGATTTGG 58.821 41.667 0.00 0.00 0.00 3.28
2044 2394 5.466819 TGTGTTAGAGTGGATTCGTGTTAG 58.533 41.667 0.00 0.00 0.00 2.34
2051 2402 4.997395 TGCTTCTTGTGTTAGAGTGGATTC 59.003 41.667 0.00 0.00 0.00 2.52
2119 2473 5.411669 ACCGAATGAGAGTAACCAAATGTTC 59.588 40.000 0.00 0.00 38.42 3.18
2132 2486 0.389817 TTGCACCGACCGAATGAGAG 60.390 55.000 0.00 0.00 0.00 3.20
2134 2488 0.374758 CATTGCACCGACCGAATGAG 59.625 55.000 0.00 0.00 0.00 2.90
2386 2789 3.760035 TTGAGCTCGGCCTCGGTC 61.760 66.667 9.64 7.30 34.56 4.79
2898 3304 3.967326 ACCCATAATGGAGTTCGATCAGA 59.033 43.478 0.00 0.00 40.96 3.27
2904 3333 6.128282 GCAACATATACCCATAATGGAGTTCG 60.128 42.308 0.00 0.00 40.96 3.95
2918 3350 6.808008 ACAGCATCATTAGCAACATATACC 57.192 37.500 0.00 0.00 0.00 2.73
2947 3396 2.421424 GCCTCATTCTGTCCAATCACAC 59.579 50.000 0.00 0.00 0.00 3.82
2969 3418 1.078567 CAGCACCTCCCTCAGCTTC 60.079 63.158 0.00 0.00 34.61 3.86
3121 3574 5.129485 CAGCTAAACTCCCCTAAGATTCAGA 59.871 44.000 0.00 0.00 0.00 3.27
3122 3575 5.363939 CAGCTAAACTCCCCTAAGATTCAG 58.636 45.833 0.00 0.00 0.00 3.02
3189 3653 1.300931 CCCACGAGGTCACACACTG 60.301 63.158 0.00 0.00 0.00 3.66
3248 3714 2.457366 AGCCTCCTTACACAAAGACG 57.543 50.000 0.00 0.00 37.38 4.18
3361 3958 6.294731 GCAAAAACTTATGAACCAGAGACCAT 60.295 38.462 0.00 0.00 0.00 3.55
3362 3959 5.009610 GCAAAAACTTATGAACCAGAGACCA 59.990 40.000 0.00 0.00 0.00 4.02
3363 3960 5.461526 GCAAAAACTTATGAACCAGAGACC 58.538 41.667 0.00 0.00 0.00 3.85
3364 3961 5.147162 CGCAAAAACTTATGAACCAGAGAC 58.853 41.667 0.00 0.00 0.00 3.36
3365 3962 4.320202 GCGCAAAAACTTATGAACCAGAGA 60.320 41.667 0.30 0.00 0.00 3.10
3366 3963 3.914364 GCGCAAAAACTTATGAACCAGAG 59.086 43.478 0.30 0.00 0.00 3.35
3367 3964 3.305064 GGCGCAAAAACTTATGAACCAGA 60.305 43.478 10.83 0.00 0.00 3.86
3368 3965 2.986479 GGCGCAAAAACTTATGAACCAG 59.014 45.455 10.83 0.00 0.00 4.00
3369 3966 2.362397 TGGCGCAAAAACTTATGAACCA 59.638 40.909 10.83 0.00 0.00 3.67
3370 3967 3.019933 TGGCGCAAAAACTTATGAACC 57.980 42.857 10.83 0.00 0.00 3.62
3371 3968 4.233789 TGATGGCGCAAAAACTTATGAAC 58.766 39.130 10.83 0.00 0.00 3.18
3372 3969 4.022416 ACTGATGGCGCAAAAACTTATGAA 60.022 37.500 10.83 0.00 0.00 2.57
3373 3970 3.505680 ACTGATGGCGCAAAAACTTATGA 59.494 39.130 10.83 0.00 0.00 2.15
3374 3971 3.836949 ACTGATGGCGCAAAAACTTATG 58.163 40.909 10.83 0.00 0.00 1.90
3375 3972 5.637006 TTACTGATGGCGCAAAAACTTAT 57.363 34.783 10.83 0.00 0.00 1.73
3376 3973 5.048364 ACATTACTGATGGCGCAAAAACTTA 60.048 36.000 10.83 0.00 40.21 2.24
3377 3974 4.236935 CATTACTGATGGCGCAAAAACTT 58.763 39.130 10.83 0.00 31.83 2.66
3378 3975 3.255642 ACATTACTGATGGCGCAAAAACT 59.744 39.130 10.83 0.00 40.21 2.66
3379 3976 3.574614 ACATTACTGATGGCGCAAAAAC 58.425 40.909 10.83 0.00 40.21 2.43
3380 3977 3.932545 ACATTACTGATGGCGCAAAAA 57.067 38.095 10.83 0.00 40.21 1.94
3381 3978 3.932545 AACATTACTGATGGCGCAAAA 57.067 38.095 10.83 0.00 40.21 2.44
3382 3979 3.932545 AAACATTACTGATGGCGCAAA 57.067 38.095 10.83 0.00 40.21 3.68
3383 3980 3.254411 TGAAAACATTACTGATGGCGCAA 59.746 39.130 10.83 0.00 40.21 4.85
3384 3981 2.816672 TGAAAACATTACTGATGGCGCA 59.183 40.909 10.83 0.00 40.21 6.09
3385 3982 3.485947 TGAAAACATTACTGATGGCGC 57.514 42.857 0.00 0.00 40.21 6.53
3386 3983 9.729023 TTAATTATGAAAACATTACTGATGGCG 57.271 29.630 0.00 0.00 40.21 5.69
3404 4001 9.855361 CGTAGAATGAAGCTCTTGTTAATTATG 57.145 33.333 0.00 0.00 0.00 1.90
3405 4002 9.601217 ACGTAGAATGAAGCTCTTGTTAATTAT 57.399 29.630 0.00 0.00 0.00 1.28
3406 4003 8.997621 ACGTAGAATGAAGCTCTTGTTAATTA 57.002 30.769 0.00 0.00 0.00 1.40
3407 4004 7.907214 ACGTAGAATGAAGCTCTTGTTAATT 57.093 32.000 0.00 0.00 0.00 1.40
3408 4005 7.907214 AACGTAGAATGAAGCTCTTGTTAAT 57.093 32.000 0.00 0.00 0.00 1.40
3409 4006 7.724305 AAACGTAGAATGAAGCTCTTGTTAA 57.276 32.000 0.00 0.00 0.00 2.01
3410 4007 7.724305 AAAACGTAGAATGAAGCTCTTGTTA 57.276 32.000 0.00 0.00 0.00 2.41
3411 4008 6.619801 AAAACGTAGAATGAAGCTCTTGTT 57.380 33.333 0.00 0.00 0.00 2.83
3412 4009 6.483640 AGAAAAACGTAGAATGAAGCTCTTGT 59.516 34.615 0.00 0.00 0.00 3.16
3413 4010 6.794158 CAGAAAAACGTAGAATGAAGCTCTTG 59.206 38.462 0.00 0.00 0.00 3.02
3414 4011 6.706270 TCAGAAAAACGTAGAATGAAGCTCTT 59.294 34.615 0.00 0.00 0.00 2.85
3415 4012 6.223852 TCAGAAAAACGTAGAATGAAGCTCT 58.776 36.000 0.00 0.00 0.00 4.09
3416 4013 6.467723 TCAGAAAAACGTAGAATGAAGCTC 57.532 37.500 0.00 0.00 0.00 4.09
3417 4014 6.861065 TTCAGAAAAACGTAGAATGAAGCT 57.139 33.333 0.00 0.00 0.00 3.74
3418 4015 6.910433 TGTTTCAGAAAAACGTAGAATGAAGC 59.090 34.615 0.00 0.00 33.05 3.86
3419 4016 8.835467 TTGTTTCAGAAAAACGTAGAATGAAG 57.165 30.769 0.00 0.00 33.05 3.02
3420 4017 9.232082 CATTGTTTCAGAAAAACGTAGAATGAA 57.768 29.630 0.00 0.00 33.05 2.57
3421 4018 8.402472 ACATTGTTTCAGAAAAACGTAGAATGA 58.598 29.630 13.68 0.00 30.73 2.57
3422 4019 8.560576 ACATTGTTTCAGAAAAACGTAGAATG 57.439 30.769 0.00 0.00 33.05 2.67
3423 4020 9.581099 AAACATTGTTTCAGAAAAACGTAGAAT 57.419 25.926 8.97 0.00 33.05 2.40
3424 4021 8.973835 AAACATTGTTTCAGAAAAACGTAGAA 57.026 26.923 8.97 0.00 33.05 2.10
3425 4022 8.973835 AAAACATTGTTTCAGAAAAACGTAGA 57.026 26.923 14.80 0.00 33.05 2.59
3426 4023 9.072294 AGAAAACATTGTTTCAGAAAAACGTAG 57.928 29.630 14.80 0.00 39.52 3.51
3427 4024 8.855279 CAGAAAACATTGTTTCAGAAAAACGTA 58.145 29.630 14.80 0.00 39.52 3.57
3428 4025 7.148656 CCAGAAAACATTGTTTCAGAAAAACGT 60.149 33.333 14.80 0.00 39.52 3.99
3429 4026 7.148656 ACCAGAAAACATTGTTTCAGAAAAACG 60.149 33.333 14.80 0.48 39.52 3.60
3430 4027 8.028540 ACCAGAAAACATTGTTTCAGAAAAAC 57.971 30.769 14.80 0.00 39.52 2.43
3431 4028 8.093927 AGACCAGAAAACATTGTTTCAGAAAAA 58.906 29.630 14.80 0.00 39.52 1.94
3432 4029 7.610865 AGACCAGAAAACATTGTTTCAGAAAA 58.389 30.769 14.80 0.00 39.52 2.29
3433 4030 7.122650 AGAGACCAGAAAACATTGTTTCAGAAA 59.877 33.333 14.80 0.00 39.52 2.52
3434 4031 6.603201 AGAGACCAGAAAACATTGTTTCAGAA 59.397 34.615 14.80 0.00 39.52 3.02
3435 4032 6.038603 CAGAGACCAGAAAACATTGTTTCAGA 59.961 38.462 14.80 0.00 39.52 3.27
3436 4033 6.204359 CAGAGACCAGAAAACATTGTTTCAG 58.796 40.000 14.80 8.06 39.52 3.02
3437 4034 5.067674 CCAGAGACCAGAAAACATTGTTTCA 59.932 40.000 14.80 0.00 39.52 2.69
3438 4035 5.067805 ACCAGAGACCAGAAAACATTGTTTC 59.932 40.000 14.80 8.87 37.70 2.78
3439 4036 4.956075 ACCAGAGACCAGAAAACATTGTTT 59.044 37.500 8.97 8.97 0.00 2.83
3440 4037 4.536765 ACCAGAGACCAGAAAACATTGTT 58.463 39.130 0.00 0.00 0.00 2.83
3441 4038 4.170468 ACCAGAGACCAGAAAACATTGT 57.830 40.909 0.00 0.00 0.00 2.71
3442 4039 4.580167 TGAACCAGAGACCAGAAAACATTG 59.420 41.667 0.00 0.00 0.00 2.82
3443 4040 4.792068 TGAACCAGAGACCAGAAAACATT 58.208 39.130 0.00 0.00 0.00 2.71
3444 4041 4.437682 TGAACCAGAGACCAGAAAACAT 57.562 40.909 0.00 0.00 0.00 2.71
3445 4042 3.924114 TGAACCAGAGACCAGAAAACA 57.076 42.857 0.00 0.00 0.00 2.83
3446 4043 5.998363 ACTTATGAACCAGAGACCAGAAAAC 59.002 40.000 0.00 0.00 0.00 2.43
3447 4044 6.187727 ACTTATGAACCAGAGACCAGAAAA 57.812 37.500 0.00 0.00 0.00 2.29
3448 4045 5.825593 ACTTATGAACCAGAGACCAGAAA 57.174 39.130 0.00 0.00 0.00 2.52
3449 4046 5.566826 CGAACTTATGAACCAGAGACCAGAA 60.567 44.000 0.00 0.00 0.00 3.02
3450 4047 4.082190 CGAACTTATGAACCAGAGACCAGA 60.082 45.833 0.00 0.00 0.00 3.86
3451 4048 4.177026 CGAACTTATGAACCAGAGACCAG 58.823 47.826 0.00 0.00 0.00 4.00
3465 4062 5.488341 ACTTTACTGATGGTGCGAACTTAT 58.512 37.500 0.00 0.00 0.00 1.73
3472 4069 2.159707 CGGAAACTTTACTGATGGTGCG 60.160 50.000 0.00 0.00 0.00 5.34
3484 4081 0.668535 GACTGCCAAGCGGAAACTTT 59.331 50.000 1.69 0.00 38.46 2.66
3486 4083 0.886490 CTGACTGCCAAGCGGAAACT 60.886 55.000 1.69 0.00 38.46 2.66
3521 4141 7.597743 CAGCTCTGAGCAAAATAAAGTCAAATT 59.402 33.333 29.49 1.49 45.56 1.82
3541 4161 1.859302 ACTAGCCTGCTTACAGCTCT 58.141 50.000 0.00 0.00 42.97 4.09
3617 4238 1.131638 AACAGTGAACTCCAGCCTGA 58.868 50.000 0.00 0.00 0.00 3.86
3618 4239 1.202687 TCAACAGTGAACTCCAGCCTG 60.203 52.381 0.00 0.00 0.00 4.85
3620 4241 1.517242 CTCAACAGTGAACTCCAGCC 58.483 55.000 0.00 0.00 31.88 4.85
3622 4243 1.517242 GGCTCAACAGTGAACTCCAG 58.483 55.000 0.00 0.00 31.88 3.86
3624 4245 0.108585 TGGGCTCAACAGTGAACTCC 59.891 55.000 0.00 0.00 31.88 3.85
3626 4247 2.664402 AATGGGCTCAACAGTGAACT 57.336 45.000 0.00 0.00 31.88 3.01
3664 4305 4.082733 GGATGCAAAAGAGGTAAGGTTGAC 60.083 45.833 0.00 0.00 0.00 3.18
3695 4336 3.343941 TTTCTGTACGCATAGGCCTTT 57.656 42.857 12.58 0.00 36.38 3.11
3710 4351 4.793353 GCGGGTACTCTGCTAGTATTTCTG 60.793 50.000 7.64 3.82 42.63 3.02
3722 4363 0.595053 CGTGCTATGCGGGTACTCTG 60.595 60.000 0.00 0.00 0.00 3.35
3723 4364 1.035932 ACGTGCTATGCGGGTACTCT 61.036 55.000 0.00 0.00 0.00 3.24
3725 4366 0.179119 GAACGTGCTATGCGGGTACT 60.179 55.000 0.00 0.00 0.00 2.73
3726 4367 1.477030 CGAACGTGCTATGCGGGTAC 61.477 60.000 0.00 0.00 0.00 3.34
3727 4368 1.226745 CGAACGTGCTATGCGGGTA 60.227 57.895 0.00 0.00 0.00 3.69
3728 4369 1.936436 TACGAACGTGCTATGCGGGT 61.936 55.000 10.14 0.00 0.00 5.28
3729 4370 1.206745 CTACGAACGTGCTATGCGGG 61.207 60.000 10.14 0.00 0.00 6.13
3732 4373 0.847035 GAGCTACGAACGTGCTATGC 59.153 55.000 18.11 11.18 34.47 3.14
3733 4374 1.113253 CGAGCTACGAACGTGCTATG 58.887 55.000 18.11 12.71 45.77 2.23
3734 4375 3.528594 CGAGCTACGAACGTGCTAT 57.471 52.632 18.11 4.63 45.77 2.97
3789 4431 7.142021 ACATCGTGTATCTTGTCTAGCAATAG 58.858 38.462 0.97 0.00 36.36 1.73
3790 4432 7.039313 ACATCGTGTATCTTGTCTAGCAATA 57.961 36.000 0.97 0.00 36.36 1.90
3810 4474 2.896685 AGATAGGCAGGCTCTGTACATC 59.103 50.000 0.00 0.00 33.43 3.06
3889 4555 5.180117 ACTGATTGATGTGAAACTGTACAGC 59.820 40.000 22.90 7.39 38.04 4.40
3890 4556 6.791887 ACTGATTGATGTGAAACTGTACAG 57.208 37.500 21.44 21.44 38.04 2.74
3893 4559 7.178451 TCTCCTACTGATTGATGTGAAACTGTA 59.822 37.037 0.00 0.00 38.04 2.74
3956 4624 7.929941 AGAGAGGTTGATTTAATGGAAAGTC 57.070 36.000 0.00 0.00 0.00 3.01
4000 4672 1.749063 TCTAGTGATGGTACTGCGGTG 59.251 52.381 8.92 0.00 32.19 4.94
4009 4681 6.784473 TGGTGATATCTGATTCTAGTGATGGT 59.216 38.462 3.98 0.00 0.00 3.55
4010 4682 7.237209 TGGTGATATCTGATTCTAGTGATGG 57.763 40.000 3.98 0.00 0.00 3.51
4022 4694 7.490657 TGATGATGATGATGGTGATATCTGA 57.509 36.000 3.98 0.00 0.00 3.27
4035 4707 8.896744 CATTGATGATGATGATGATGATGATGA 58.103 33.333 0.00 0.00 38.03 2.92
4036 4708 8.133627 CCATTGATGATGATGATGATGATGATG 58.866 37.037 0.00 0.00 38.03 3.07
4041 6272 5.222254 ACCCCATTGATGATGATGATGATGA 60.222 40.000 0.00 0.00 38.03 2.92
4052 6283 0.179009 CCGCTGACCCCATTGATGAT 60.179 55.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.