Multiple sequence alignment - TraesCS7D01G314500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G314500 chr7D 100.000 2560 0 0 1 2560 400279476 400276917 0.000000e+00 4728.0
1 TraesCS7D01G314500 chr7D 93.157 453 30 1 2106 2558 363635344 363635795 0.000000e+00 664.0
2 TraesCS7D01G314500 chr7D 98.276 58 1 0 279 336 400279140 400279083 4.510000e-18 102.0
3 TraesCS7D01G314500 chr7D 98.276 58 1 0 337 394 400279198 400279141 4.510000e-18 102.0
4 TraesCS7D01G314500 chr7D 96.774 31 1 0 1 31 227288979 227289009 5.000000e-03 52.8
5 TraesCS7D01G314500 chr6A 96.282 1560 55 3 1001 2560 74162311 74163867 0.000000e+00 2556.0
6 TraesCS7D01G314500 chr6A 97.917 336 7 0 1 336 74161579 74161914 1.320000e-162 582.0
7 TraesCS7D01G314500 chr6A 97.665 257 6 0 337 593 74161857 74162113 2.340000e-120 442.0
8 TraesCS7D01G314500 chr6A 95.455 110 4 1 592 701 74162217 74162325 9.420000e-40 174.0
9 TraesCS7D01G314500 chrUn 89.855 966 90 6 1145 2105 86340790 86339828 0.000000e+00 1234.0
10 TraesCS7D01G314500 chrUn 93.510 339 19 1 1 336 86346263 86345925 3.800000e-138 501.0
11 TraesCS7D01G314500 chrUn 95.793 309 12 1 337 644 86345982 86345674 4.920000e-137 497.0
12 TraesCS7D01G314500 chrUn 95.652 92 4 0 1065 1156 86341145 86341054 5.710000e-32 148.0
13 TraesCS7D01G314500 chr7A 93.234 606 35 4 1001 1605 458325288 458324688 0.000000e+00 887.0
14 TraesCS7D01G314500 chr7A 95.628 366 12 3 337 701 458325636 458325274 3.670000e-163 584.0
15 TraesCS7D01G314500 chr7A 94.643 336 16 1 1 336 458325914 458325581 1.050000e-143 520.0
16 TraesCS7D01G314500 chr7A 86.189 391 48 5 1717 2105 458324683 458324297 3.940000e-113 418.0
17 TraesCS7D01G314500 chr2A 93.612 454 28 1 2105 2558 395731823 395732275 0.000000e+00 676.0
18 TraesCS7D01G314500 chr2A 93.612 454 28 1 2105 2558 405450985 405450533 0.000000e+00 676.0
19 TraesCS7D01G314500 chr2A 93.980 299 13 3 709 1007 33687988 33688281 5.020000e-122 448.0
20 TraesCS7D01G314500 chr2A 84.615 104 15 1 1615 1717 756368265 756368162 4.510000e-18 102.0
21 TraesCS7D01G314500 chr3D 93.157 453 30 1 2106 2558 324339377 324338926 0.000000e+00 664.0
22 TraesCS7D01G314500 chr3D 94.314 299 15 2 709 1006 193867026 193866729 8.350000e-125 457.0
23 TraesCS7D01G314500 chr2D 93.157 453 29 2 2106 2558 278871916 278871466 0.000000e+00 664.0
24 TraesCS7D01G314500 chr2D 93.126 451 30 1 2105 2555 188563005 188563454 0.000000e+00 660.0
25 TraesCS7D01G314500 chr2D 97.360 303 7 1 709 1010 554311661 554311963 4.880000e-142 514.0
26 TraesCS7D01G314500 chr2D 96.141 311 11 1 709 1018 562351097 562351407 8.170000e-140 507.0
27 TraesCS7D01G314500 chr2D 96.990 299 9 0 709 1007 161380248 161379950 1.060000e-138 503.0
28 TraesCS7D01G314500 chr1D 92.967 455 31 1 2105 2558 220980661 220981115 0.000000e+00 662.0
29 TraesCS7D01G314500 chr1D 92.967 455 29 3 2106 2558 329989060 329988607 0.000000e+00 660.0
30 TraesCS7D01G314500 chr1D 98.007 301 4 1 710 1008 108113658 108113958 2.920000e-144 521.0
31 TraesCS7D01G314500 chr1D 95.033 302 12 3 709 1009 493036265 493035966 2.980000e-129 472.0
32 TraesCS7D01G314500 chr1D 100.000 33 0 0 51 83 92964088 92964056 7.650000e-06 62.1
33 TraesCS7D01G314500 chr4D 95.098 306 10 4 709 1010 298389812 298390116 6.410000e-131 477.0
34 TraesCS7D01G314500 chr5D 94.000 300 15 3 709 1007 205364555 205364852 3.880000e-123 451.0
35 TraesCS7D01G314500 chr7B 87.179 117 14 1 1600 1715 696138662 696138778 5.750000e-27 132.0
36 TraesCS7D01G314500 chr6D 88.119 101 11 1 1616 1715 413351805 413351705 4.470000e-23 119.0
37 TraesCS7D01G314500 chr2B 91.250 80 6 1 1647 1725 629126673 629126752 9.690000e-20 108.0
38 TraesCS7D01G314500 chr6B 93.056 72 4 1 1646 1716 714341387 714341458 1.250000e-18 104.0
39 TraesCS7D01G314500 chr6B 90.909 77 5 2 1640 1715 641047048 641046973 4.510000e-18 102.0
40 TraesCS7D01G314500 chr4A 89.744 78 6 2 1639 1715 36025206 36025130 5.830000e-17 99.0
41 TraesCS7D01G314500 chr4A 81.132 106 15 3 1 106 460329204 460329104 2.110000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G314500 chr7D 400276917 400279476 2559 True 1644.00 4728 98.850667 1 2560 3 chr7D.!!$R1 2559
1 TraesCS7D01G314500 chr6A 74161579 74163867 2288 False 938.50 2556 96.829750 1 2560 4 chr6A.!!$F1 2559
2 TraesCS7D01G314500 chrUn 86339828 86341145 1317 True 691.00 1234 92.753500 1065 2105 2 chrUn.!!$R1 1040
3 TraesCS7D01G314500 chrUn 86345674 86346263 589 True 499.00 501 94.651500 1 644 2 chrUn.!!$R2 643
4 TraesCS7D01G314500 chr7A 458324297 458325914 1617 True 602.25 887 92.423500 1 2105 4 chr7A.!!$R1 2104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 996 0.036022 GCCTGTGCTGTCCTCTTCTT 59.964 55.0 0.0 0.0 33.53 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 2679 0.323725 GAGGCAATCCACCACCACAT 60.324 55.0 0.0 0.0 33.74 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 325 9.377383 GTATAAACAATGTACACCGATTAATGC 57.623 33.333 0.00 0.00 0.00 3.56
322 326 6.509418 AAACAATGTACACCGATTAATGCT 57.491 33.333 0.00 0.00 0.00 3.79
323 327 5.734855 ACAATGTACACCGATTAATGCTC 57.265 39.130 0.00 0.00 0.00 4.26
324 328 5.428253 ACAATGTACACCGATTAATGCTCT 58.572 37.500 0.00 0.00 0.00 4.09
325 329 5.294306 ACAATGTACACCGATTAATGCTCTG 59.706 40.000 0.00 0.00 0.00 3.35
326 330 4.729227 TGTACACCGATTAATGCTCTGA 57.271 40.909 0.00 0.00 0.00 3.27
327 331 5.276461 TGTACACCGATTAATGCTCTGAT 57.724 39.130 0.00 0.00 0.00 2.90
328 332 5.670485 TGTACACCGATTAATGCTCTGATT 58.330 37.500 0.00 0.00 0.00 2.57
329 333 6.112734 TGTACACCGATTAATGCTCTGATTT 58.887 36.000 0.00 0.00 0.00 2.17
330 334 5.490139 ACACCGATTAATGCTCTGATTTG 57.510 39.130 0.00 0.00 0.00 2.32
331 335 5.185454 ACACCGATTAATGCTCTGATTTGA 58.815 37.500 0.00 0.00 0.00 2.69
332 336 5.647658 ACACCGATTAATGCTCTGATTTGAA 59.352 36.000 0.00 0.00 0.00 2.69
333 337 6.150976 ACACCGATTAATGCTCTGATTTGAAA 59.849 34.615 0.00 0.00 0.00 2.69
334 338 7.028962 CACCGATTAATGCTCTGATTTGAAAA 58.971 34.615 0.00 0.00 0.00 2.29
335 339 7.008628 CACCGATTAATGCTCTGATTTGAAAAC 59.991 37.037 0.00 0.00 0.00 2.43
336 340 7.094205 ACCGATTAATGCTCTGATTTGAAAACT 60.094 33.333 0.00 0.00 0.00 2.66
337 341 8.397906 CCGATTAATGCTCTGATTTGAAAACTA 58.602 33.333 0.00 0.00 0.00 2.24
338 342 9.941664 CGATTAATGCTCTGATTTGAAAACTAT 57.058 29.630 0.00 0.00 0.00 2.12
400 404 6.899393 TGCTCTGATTTGAAAACATAAGGT 57.101 33.333 0.00 0.00 0.00 3.50
685 795 1.488812 AGGTGAACACTACCACAAGCA 59.511 47.619 4.96 0.00 40.74 3.91
686 796 2.092646 AGGTGAACACTACCACAAGCAA 60.093 45.455 4.96 0.00 40.74 3.91
687 797 2.685897 GGTGAACACTACCACAAGCAAA 59.314 45.455 4.96 0.00 38.12 3.68
688 798 3.129638 GGTGAACACTACCACAAGCAAAA 59.870 43.478 4.96 0.00 38.12 2.44
689 799 4.351192 GTGAACACTACCACAAGCAAAAG 58.649 43.478 0.00 0.00 33.72 2.27
690 800 3.380004 TGAACACTACCACAAGCAAAAGG 59.620 43.478 0.00 0.00 0.00 3.11
691 801 3.012934 ACACTACCACAAGCAAAAGGT 57.987 42.857 0.00 0.00 38.14 3.50
692 802 4.159244 ACACTACCACAAGCAAAAGGTA 57.841 40.909 0.00 0.00 35.62 3.08
693 803 4.725490 ACACTACCACAAGCAAAAGGTAT 58.275 39.130 0.00 0.00 36.15 2.73
694 804 5.871834 ACACTACCACAAGCAAAAGGTATA 58.128 37.500 0.00 0.00 36.15 1.47
695 805 5.704053 ACACTACCACAAGCAAAAGGTATAC 59.296 40.000 0.00 0.00 36.15 1.47
696 806 5.123344 CACTACCACAAGCAAAAGGTATACC 59.877 44.000 14.54 14.54 36.15 2.73
697 807 4.107127 ACCACAAGCAAAAGGTATACCA 57.893 40.909 23.87 0.00 38.89 3.25
698 808 3.824443 ACCACAAGCAAAAGGTATACCAC 59.176 43.478 23.87 7.61 38.89 4.16
699 809 3.823873 CCACAAGCAAAAGGTATACCACA 59.176 43.478 23.87 0.00 38.89 4.17
700 810 4.279671 CCACAAGCAAAAGGTATACCACAA 59.720 41.667 23.87 0.00 38.89 3.33
701 811 5.460646 CACAAGCAAAAGGTATACCACAAG 58.539 41.667 23.87 11.61 38.89 3.16
702 812 4.022329 ACAAGCAAAAGGTATACCACAAGC 60.022 41.667 23.87 19.80 38.89 4.01
703 813 3.761897 AGCAAAAGGTATACCACAAGCA 58.238 40.909 23.87 0.00 38.89 3.91
704 814 4.148838 AGCAAAAGGTATACCACAAGCAA 58.851 39.130 23.87 0.00 38.89 3.91
705 815 4.586841 AGCAAAAGGTATACCACAAGCAAA 59.413 37.500 23.87 0.00 38.89 3.68
706 816 4.684242 GCAAAAGGTATACCACAAGCAAAC 59.316 41.667 23.87 0.69 38.89 2.93
707 817 5.737635 GCAAAAGGTATACCACAAGCAAACA 60.738 40.000 23.87 0.00 38.89 2.83
708 818 5.705609 AAAGGTATACCACAAGCAAACAG 57.294 39.130 23.87 0.00 38.89 3.16
709 819 3.686016 AGGTATACCACAAGCAAACAGG 58.314 45.455 23.87 0.00 38.89 4.00
710 820 3.329520 AGGTATACCACAAGCAAACAGGA 59.670 43.478 23.87 0.00 38.89 3.86
711 821 3.689649 GGTATACCACAAGCAAACAGGAG 59.310 47.826 17.44 0.00 35.64 3.69
712 822 2.270352 TACCACAAGCAAACAGGAGG 57.730 50.000 0.00 0.00 0.00 4.30
713 823 0.550914 ACCACAAGCAAACAGGAGGA 59.449 50.000 0.00 0.00 0.00 3.71
714 824 1.145738 ACCACAAGCAAACAGGAGGAT 59.854 47.619 0.00 0.00 0.00 3.24
715 825 2.375174 ACCACAAGCAAACAGGAGGATA 59.625 45.455 0.00 0.00 0.00 2.59
716 826 3.010584 ACCACAAGCAAACAGGAGGATAT 59.989 43.478 0.00 0.00 0.00 1.63
717 827 3.379372 CCACAAGCAAACAGGAGGATATG 59.621 47.826 0.00 0.00 0.00 1.78
718 828 3.379372 CACAAGCAAACAGGAGGATATGG 59.621 47.826 0.00 0.00 0.00 2.74
719 829 2.355010 AGCAAACAGGAGGATATGGC 57.645 50.000 0.00 0.00 0.00 4.40
720 830 1.849039 AGCAAACAGGAGGATATGGCT 59.151 47.619 0.00 0.00 0.00 4.75
721 831 2.243221 AGCAAACAGGAGGATATGGCTT 59.757 45.455 0.00 0.00 0.00 4.35
722 832 2.360165 GCAAACAGGAGGATATGGCTTG 59.640 50.000 0.00 0.00 0.00 4.01
723 833 3.889815 CAAACAGGAGGATATGGCTTGA 58.110 45.455 0.00 0.00 0.00 3.02
724 834 3.853355 AACAGGAGGATATGGCTTGAG 57.147 47.619 0.00 0.00 0.00 3.02
725 835 1.419387 ACAGGAGGATATGGCTTGAGC 59.581 52.381 0.00 0.00 41.14 4.26
726 836 0.683973 AGGAGGATATGGCTTGAGCG 59.316 55.000 0.00 0.00 43.26 5.03
727 837 0.681733 GGAGGATATGGCTTGAGCGA 59.318 55.000 0.00 0.00 43.26 4.93
728 838 1.070758 GGAGGATATGGCTTGAGCGAA 59.929 52.381 0.00 0.00 43.26 4.70
729 839 2.485479 GGAGGATATGGCTTGAGCGAAA 60.485 50.000 0.00 0.00 43.26 3.46
730 840 2.545946 GAGGATATGGCTTGAGCGAAAC 59.454 50.000 0.00 0.00 43.26 2.78
731 841 2.092968 AGGATATGGCTTGAGCGAAACA 60.093 45.455 0.00 0.00 43.26 2.83
732 842 2.682856 GGATATGGCTTGAGCGAAACAA 59.317 45.455 0.00 0.00 43.26 2.83
733 843 3.487544 GGATATGGCTTGAGCGAAACAAC 60.488 47.826 0.00 0.00 43.26 3.32
734 844 1.317613 ATGGCTTGAGCGAAACAACA 58.682 45.000 0.00 0.00 43.26 3.33
735 845 0.662619 TGGCTTGAGCGAAACAACAG 59.337 50.000 0.00 0.00 43.26 3.16
736 846 0.944386 GGCTTGAGCGAAACAACAGA 59.056 50.000 0.00 0.00 43.26 3.41
737 847 1.333619 GGCTTGAGCGAAACAACAGAA 59.666 47.619 0.00 0.00 43.26 3.02
738 848 2.030805 GGCTTGAGCGAAACAACAGAAT 60.031 45.455 0.00 0.00 43.26 2.40
739 849 3.229552 GCTTGAGCGAAACAACAGAATC 58.770 45.455 0.00 0.00 0.00 2.52
740 850 3.058639 GCTTGAGCGAAACAACAGAATCT 60.059 43.478 0.00 0.00 0.00 2.40
741 851 4.555511 GCTTGAGCGAAACAACAGAATCTT 60.556 41.667 0.00 0.00 0.00 2.40
742 852 4.732285 TGAGCGAAACAACAGAATCTTC 57.268 40.909 0.00 0.00 0.00 2.87
743 853 4.126437 TGAGCGAAACAACAGAATCTTCA 58.874 39.130 0.00 0.00 0.00 3.02
744 854 4.212004 TGAGCGAAACAACAGAATCTTCAG 59.788 41.667 0.00 0.00 0.00 3.02
745 855 3.058639 AGCGAAACAACAGAATCTTCAGC 60.059 43.478 0.00 0.00 0.00 4.26
746 856 3.303990 GCGAAACAACAGAATCTTCAGCA 60.304 43.478 0.00 0.00 0.00 4.41
747 857 4.789481 GCGAAACAACAGAATCTTCAGCAA 60.789 41.667 0.00 0.00 0.00 3.91
748 858 4.672413 CGAAACAACAGAATCTTCAGCAAC 59.328 41.667 0.00 0.00 0.00 4.17
749 859 5.581126 AAACAACAGAATCTTCAGCAACA 57.419 34.783 0.00 0.00 0.00 3.33
750 860 5.581126 AACAACAGAATCTTCAGCAACAA 57.419 34.783 0.00 0.00 0.00 2.83
751 861 5.581126 ACAACAGAATCTTCAGCAACAAA 57.419 34.783 0.00 0.00 0.00 2.83
752 862 5.964758 ACAACAGAATCTTCAGCAACAAAA 58.035 33.333 0.00 0.00 0.00 2.44
753 863 6.576185 ACAACAGAATCTTCAGCAACAAAAT 58.424 32.000 0.00 0.00 0.00 1.82
754 864 6.698766 ACAACAGAATCTTCAGCAACAAAATC 59.301 34.615 0.00 0.00 0.00 2.17
755 865 6.645790 ACAGAATCTTCAGCAACAAAATCT 57.354 33.333 0.00 0.00 0.00 2.40
756 866 6.675987 ACAGAATCTTCAGCAACAAAATCTC 58.324 36.000 0.00 0.00 0.00 2.75
757 867 6.263842 ACAGAATCTTCAGCAACAAAATCTCA 59.736 34.615 0.00 0.00 0.00 3.27
758 868 7.143340 CAGAATCTTCAGCAACAAAATCTCAA 58.857 34.615 0.00 0.00 0.00 3.02
759 869 7.114529 CAGAATCTTCAGCAACAAAATCTCAAC 59.885 37.037 0.00 0.00 0.00 3.18
760 870 4.847633 TCTTCAGCAACAAAATCTCAACG 58.152 39.130 0.00 0.00 0.00 4.10
761 871 3.624326 TCAGCAACAAAATCTCAACGG 57.376 42.857 0.00 0.00 0.00 4.44
762 872 2.948979 TCAGCAACAAAATCTCAACGGT 59.051 40.909 0.00 0.00 0.00 4.83
763 873 3.044986 CAGCAACAAAATCTCAACGGTG 58.955 45.455 0.00 0.00 0.00 4.94
764 874 2.034558 AGCAACAAAATCTCAACGGTGG 59.965 45.455 0.00 0.00 0.00 4.61
765 875 2.034053 GCAACAAAATCTCAACGGTGGA 59.966 45.455 0.00 0.00 0.00 4.02
766 876 3.490078 GCAACAAAATCTCAACGGTGGAA 60.490 43.478 0.00 0.00 0.00 3.53
767 877 4.677584 CAACAAAATCTCAACGGTGGAAA 58.322 39.130 0.00 0.00 0.00 3.13
768 878 4.301637 ACAAAATCTCAACGGTGGAAAC 57.698 40.909 0.00 0.00 0.00 2.78
769 879 3.067601 ACAAAATCTCAACGGTGGAAACC 59.932 43.478 0.00 0.00 0.00 3.27
770 880 2.649531 AATCTCAACGGTGGAAACCA 57.350 45.000 0.00 0.00 0.00 3.67
781 891 2.584835 TGGAAACCACAATGAGGGAG 57.415 50.000 1.13 0.00 0.00 4.30
782 892 2.061848 TGGAAACCACAATGAGGGAGA 58.938 47.619 1.13 0.00 0.00 3.71
783 893 2.649312 TGGAAACCACAATGAGGGAGAT 59.351 45.455 1.13 0.00 0.00 2.75
784 894 3.282885 GGAAACCACAATGAGGGAGATC 58.717 50.000 1.13 0.00 0.00 2.75
785 895 3.282885 GAAACCACAATGAGGGAGATCC 58.717 50.000 1.13 0.00 0.00 3.36
786 896 0.833287 ACCACAATGAGGGAGATCCG 59.167 55.000 1.13 0.00 41.52 4.18
787 897 1.123077 CCACAATGAGGGAGATCCGA 58.877 55.000 0.00 0.00 41.52 4.55
788 898 1.069823 CCACAATGAGGGAGATCCGAG 59.930 57.143 0.00 0.00 41.52 4.63
789 899 1.069823 CACAATGAGGGAGATCCGAGG 59.930 57.143 0.00 0.00 41.52 4.63
790 900 1.062886 ACAATGAGGGAGATCCGAGGA 60.063 52.381 0.00 0.00 41.52 3.71
791 901 1.617850 CAATGAGGGAGATCCGAGGAG 59.382 57.143 0.00 0.00 41.52 3.69
792 902 1.153539 ATGAGGGAGATCCGAGGAGA 58.846 55.000 0.00 0.00 41.52 3.71
793 903 0.183971 TGAGGGAGATCCGAGGAGAC 59.816 60.000 0.00 0.00 41.52 3.36
795 905 0.930726 AGGGAGATCCGAGGAGACTT 59.069 55.000 0.00 0.00 44.43 3.01
796 906 1.036707 GGGAGATCCGAGGAGACTTG 58.963 60.000 0.00 0.00 44.43 3.16
797 907 1.410365 GGGAGATCCGAGGAGACTTGA 60.410 57.143 0.00 0.00 45.46 3.02
798 908 2.379972 GGAGATCCGAGGAGACTTGAA 58.620 52.381 0.00 0.00 45.46 2.69
799 909 2.761208 GGAGATCCGAGGAGACTTGAAA 59.239 50.000 0.00 0.00 45.46 2.69
800 910 3.386402 GGAGATCCGAGGAGACTTGAAAT 59.614 47.826 0.00 0.00 45.46 2.17
801 911 4.141824 GGAGATCCGAGGAGACTTGAAATT 60.142 45.833 0.00 0.00 45.46 1.82
802 912 4.764172 AGATCCGAGGAGACTTGAAATTG 58.236 43.478 0.00 0.00 45.46 2.32
803 913 4.223923 AGATCCGAGGAGACTTGAAATTGT 59.776 41.667 0.00 0.00 45.46 2.71
804 914 3.664107 TCCGAGGAGACTTGAAATTGTG 58.336 45.455 0.00 0.00 45.46 3.33
805 915 2.744202 CCGAGGAGACTTGAAATTGTGG 59.256 50.000 0.00 0.00 45.46 4.17
806 916 3.557054 CCGAGGAGACTTGAAATTGTGGA 60.557 47.826 0.00 0.00 45.46 4.02
807 917 3.681897 CGAGGAGACTTGAAATTGTGGAG 59.318 47.826 0.00 0.00 45.46 3.86
808 918 4.561530 CGAGGAGACTTGAAATTGTGGAGA 60.562 45.833 0.00 0.00 45.46 3.71
809 919 4.646572 AGGAGACTTGAAATTGTGGAGAC 58.353 43.478 0.00 0.00 37.44 3.36
810 920 4.349342 AGGAGACTTGAAATTGTGGAGACT 59.651 41.667 0.00 0.00 37.44 3.24
811 921 4.453819 GGAGACTTGAAATTGTGGAGACTG 59.546 45.833 0.00 0.00 0.00 3.51
812 922 4.392940 AGACTTGAAATTGTGGAGACTGG 58.607 43.478 0.00 0.00 0.00 4.00
813 923 4.103153 AGACTTGAAATTGTGGAGACTGGA 59.897 41.667 0.00 0.00 0.00 3.86
814 924 4.392940 ACTTGAAATTGTGGAGACTGGAG 58.607 43.478 0.00 0.00 0.00 3.86
815 925 3.423539 TGAAATTGTGGAGACTGGAGG 57.576 47.619 0.00 0.00 0.00 4.30
816 926 2.040278 TGAAATTGTGGAGACTGGAGGG 59.960 50.000 0.00 0.00 0.00 4.30
817 927 1.747444 AATTGTGGAGACTGGAGGGT 58.253 50.000 0.00 0.00 0.00 4.34
818 928 0.987294 ATTGTGGAGACTGGAGGGTG 59.013 55.000 0.00 0.00 0.00 4.61
819 929 1.768684 TTGTGGAGACTGGAGGGTGC 61.769 60.000 0.00 0.00 0.00 5.01
820 930 2.204034 TGGAGACTGGAGGGTGCA 59.796 61.111 0.00 0.00 0.00 4.57
821 931 1.229625 TGGAGACTGGAGGGTGCAT 60.230 57.895 0.00 0.00 0.00 3.96
822 932 1.267574 TGGAGACTGGAGGGTGCATC 61.268 60.000 0.00 0.00 0.00 3.91
823 933 1.524482 GAGACTGGAGGGTGCATCC 59.476 63.158 8.37 8.37 37.35 3.51
824 934 0.980231 GAGACTGGAGGGTGCATCCT 60.980 60.000 21.46 21.46 40.43 3.24
825 935 1.222936 GACTGGAGGGTGCATCCTG 59.777 63.158 27.08 16.44 40.55 3.86
826 936 2.124403 CTGGAGGGTGCATCCTGC 60.124 66.667 29.36 29.36 44.31 4.85
827 937 3.711059 CTGGAGGGTGCATCCTGCC 62.711 68.421 32.11 26.08 44.23 4.85
828 938 3.415087 GGAGGGTGCATCCTGCCT 61.415 66.667 27.08 0.00 44.23 4.75
829 939 2.124403 GAGGGTGCATCCTGCCTG 60.124 66.667 27.08 0.00 44.23 4.85
830 940 4.437587 AGGGTGCATCCTGCCTGC 62.438 66.667 20.51 0.00 44.23 4.85
831 941 4.437587 GGGTGCATCCTGCCTGCT 62.438 66.667 9.39 0.00 44.23 4.24
832 942 3.138798 GGTGCATCCTGCCTGCTG 61.139 66.667 0.00 0.00 44.23 4.41
833 943 2.360852 GTGCATCCTGCCTGCTGT 60.361 61.111 0.00 0.00 44.23 4.40
834 944 2.045634 TGCATCCTGCCTGCTGTC 60.046 61.111 0.00 0.00 44.23 3.51
835 945 3.200593 GCATCCTGCCTGCTGTCG 61.201 66.667 0.00 0.00 37.42 4.35
836 946 3.200593 CATCCTGCCTGCTGTCGC 61.201 66.667 0.00 0.00 0.00 5.19
837 947 4.479993 ATCCTGCCTGCTGTCGCC 62.480 66.667 0.00 0.00 34.43 5.54
839 949 4.711949 CCTGCCTGCTGTCGCCTT 62.712 66.667 0.00 0.00 34.43 4.35
840 950 2.670934 CTGCCTGCTGTCGCCTTT 60.671 61.111 0.00 0.00 34.43 3.11
841 951 2.669569 TGCCTGCTGTCGCCTTTC 60.670 61.111 0.00 0.00 34.43 2.62
842 952 3.793144 GCCTGCTGTCGCCTTTCG 61.793 66.667 0.00 0.00 40.15 3.46
843 953 3.121030 CCTGCTGTCGCCTTTCGG 61.121 66.667 0.00 0.00 39.05 4.30
844 954 3.121030 CTGCTGTCGCCTTTCGGG 61.121 66.667 0.00 0.00 39.05 5.14
845 955 4.697756 TGCTGTCGCCTTTCGGGG 62.698 66.667 0.00 0.00 44.21 5.73
860 970 2.039624 GGGACCCAGGCTGAGAGA 59.960 66.667 17.94 0.00 0.00 3.10
861 971 1.383803 GGGACCCAGGCTGAGAGAT 60.384 63.158 17.94 0.00 0.00 2.75
862 972 0.985490 GGGACCCAGGCTGAGAGATT 60.985 60.000 17.94 0.00 0.00 2.40
863 973 0.915364 GGACCCAGGCTGAGAGATTT 59.085 55.000 17.94 0.00 0.00 2.17
864 974 1.283321 GGACCCAGGCTGAGAGATTTT 59.717 52.381 17.94 0.00 0.00 1.82
865 975 2.291217 GGACCCAGGCTGAGAGATTTTT 60.291 50.000 17.94 0.00 0.00 1.94
866 976 3.013219 GACCCAGGCTGAGAGATTTTTC 58.987 50.000 17.94 0.00 0.00 2.29
867 977 2.012673 CCCAGGCTGAGAGATTTTTCG 58.987 52.381 17.94 0.00 0.00 3.46
868 978 1.399791 CCAGGCTGAGAGATTTTTCGC 59.600 52.381 17.94 0.00 0.00 4.70
869 979 1.399791 CAGGCTGAGAGATTTTTCGCC 59.600 52.381 9.42 0.00 35.04 5.54
870 980 1.280421 AGGCTGAGAGATTTTTCGCCT 59.720 47.619 6.42 6.42 38.00 5.52
871 981 1.399791 GGCTGAGAGATTTTTCGCCTG 59.600 52.381 0.00 0.00 33.36 4.85
872 982 2.079925 GCTGAGAGATTTTTCGCCTGT 58.920 47.619 0.00 0.00 0.00 4.00
873 983 2.159599 GCTGAGAGATTTTTCGCCTGTG 60.160 50.000 0.00 0.00 0.00 3.66
874 984 1.806542 TGAGAGATTTTTCGCCTGTGC 59.193 47.619 0.00 0.00 0.00 4.57
875 985 2.079925 GAGAGATTTTTCGCCTGTGCT 58.920 47.619 0.00 0.00 34.43 4.40
876 986 1.808945 AGAGATTTTTCGCCTGTGCTG 59.191 47.619 0.00 0.00 34.43 4.41
877 987 1.537202 GAGATTTTTCGCCTGTGCTGT 59.463 47.619 0.00 0.00 34.43 4.40
878 988 1.537202 AGATTTTTCGCCTGTGCTGTC 59.463 47.619 0.00 0.00 34.43 3.51
879 989 0.598065 ATTTTTCGCCTGTGCTGTCC 59.402 50.000 0.00 0.00 34.43 4.02
880 990 0.465460 TTTTTCGCCTGTGCTGTCCT 60.465 50.000 0.00 0.00 34.43 3.85
881 991 0.884704 TTTTCGCCTGTGCTGTCCTC 60.885 55.000 0.00 0.00 34.43 3.71
882 992 1.758440 TTTCGCCTGTGCTGTCCTCT 61.758 55.000 0.00 0.00 34.43 3.69
883 993 1.758440 TTCGCCTGTGCTGTCCTCTT 61.758 55.000 0.00 0.00 34.43 2.85
884 994 1.739562 CGCCTGTGCTGTCCTCTTC 60.740 63.158 0.00 0.00 34.43 2.87
885 995 1.676384 GCCTGTGCTGTCCTCTTCT 59.324 57.895 0.00 0.00 33.53 2.85
886 996 0.036022 GCCTGTGCTGTCCTCTTCTT 59.964 55.000 0.00 0.00 33.53 2.52
887 997 1.544314 GCCTGTGCTGTCCTCTTCTTT 60.544 52.381 0.00 0.00 33.53 2.52
888 998 2.856222 CCTGTGCTGTCCTCTTCTTTT 58.144 47.619 0.00 0.00 0.00 2.27
889 999 2.810852 CCTGTGCTGTCCTCTTCTTTTC 59.189 50.000 0.00 0.00 0.00 2.29
890 1000 3.495806 CCTGTGCTGTCCTCTTCTTTTCT 60.496 47.826 0.00 0.00 0.00 2.52
891 1001 4.133078 CTGTGCTGTCCTCTTCTTTTCTT 58.867 43.478 0.00 0.00 0.00 2.52
892 1002 4.130118 TGTGCTGTCCTCTTCTTTTCTTC 58.870 43.478 0.00 0.00 0.00 2.87
893 1003 4.141620 TGTGCTGTCCTCTTCTTTTCTTCT 60.142 41.667 0.00 0.00 0.00 2.85
894 1004 4.450757 GTGCTGTCCTCTTCTTTTCTTCTC 59.549 45.833 0.00 0.00 0.00 2.87
895 1005 4.000325 GCTGTCCTCTTCTTTTCTTCTCC 59.000 47.826 0.00 0.00 0.00 3.71
896 1006 4.262851 GCTGTCCTCTTCTTTTCTTCTCCT 60.263 45.833 0.00 0.00 0.00 3.69
897 1007 5.744594 GCTGTCCTCTTCTTTTCTTCTCCTT 60.745 44.000 0.00 0.00 0.00 3.36
898 1008 6.253946 TGTCCTCTTCTTTTCTTCTCCTTT 57.746 37.500 0.00 0.00 0.00 3.11
899 1009 6.663734 TGTCCTCTTCTTTTCTTCTCCTTTT 58.336 36.000 0.00 0.00 0.00 2.27
900 1010 7.802117 TGTCCTCTTCTTTTCTTCTCCTTTTA 58.198 34.615 0.00 0.00 0.00 1.52
901 1011 8.272173 TGTCCTCTTCTTTTCTTCTCCTTTTAA 58.728 33.333 0.00 0.00 0.00 1.52
902 1012 9.290988 GTCCTCTTCTTTTCTTCTCCTTTTAAT 57.709 33.333 0.00 0.00 0.00 1.40
903 1013 9.868160 TCCTCTTCTTTTCTTCTCCTTTTAATT 57.132 29.630 0.00 0.00 0.00 1.40
909 1019 9.868160 TCTTTTCTTCTCCTTTTAATTTCCTCT 57.132 29.630 0.00 0.00 0.00 3.69
912 1022 9.868160 TTTCTTCTCCTTTTAATTTCCTCTTCT 57.132 29.630 0.00 0.00 0.00 2.85
913 1023 9.868160 TTCTTCTCCTTTTAATTTCCTCTTCTT 57.132 29.630 0.00 0.00 0.00 2.52
914 1024 9.868160 TCTTCTCCTTTTAATTTCCTCTTCTTT 57.132 29.630 0.00 0.00 0.00 2.52
937 1047 4.778213 TTCATCCTTAGGACCATCTTGG 57.222 45.455 1.74 0.00 45.02 3.61
953 1063 7.369803 CCATCTTGGTCTATGTACATATTGC 57.630 40.000 15.81 8.94 31.35 3.56
954 1064 7.164122 CCATCTTGGTCTATGTACATATTGCT 58.836 38.462 15.81 0.00 31.35 3.91
955 1065 7.332926 CCATCTTGGTCTATGTACATATTGCTC 59.667 40.741 15.81 5.69 31.35 4.26
956 1066 6.759272 TCTTGGTCTATGTACATATTGCTCC 58.241 40.000 15.81 13.13 0.00 4.70
957 1067 5.483685 TGGTCTATGTACATATTGCTCCC 57.516 43.478 15.81 9.83 0.00 4.30
958 1068 5.155161 TGGTCTATGTACATATTGCTCCCT 58.845 41.667 15.81 0.00 0.00 4.20
959 1069 6.319715 TGGTCTATGTACATATTGCTCCCTA 58.680 40.000 15.81 0.00 0.00 3.53
960 1070 6.210784 TGGTCTATGTACATATTGCTCCCTAC 59.789 42.308 15.81 4.24 0.00 3.18
961 1071 6.351117 GGTCTATGTACATATTGCTCCCTACC 60.351 46.154 15.81 8.64 0.00 3.18
962 1072 6.437793 GTCTATGTACATATTGCTCCCTACCT 59.562 42.308 15.81 0.00 0.00 3.08
963 1073 7.614583 GTCTATGTACATATTGCTCCCTACCTA 59.385 40.741 15.81 0.00 0.00 3.08
964 1074 8.344546 TCTATGTACATATTGCTCCCTACCTAT 58.655 37.037 15.81 0.00 0.00 2.57
965 1075 6.852420 TGTACATATTGCTCCCTACCTATC 57.148 41.667 0.00 0.00 0.00 2.08
966 1076 6.319715 TGTACATATTGCTCCCTACCTATCA 58.680 40.000 0.00 0.00 0.00 2.15
967 1077 6.959954 TGTACATATTGCTCCCTACCTATCAT 59.040 38.462 0.00 0.00 0.00 2.45
968 1078 8.119891 TGTACATATTGCTCCCTACCTATCATA 58.880 37.037 0.00 0.00 0.00 2.15
969 1079 8.978472 GTACATATTGCTCCCTACCTATCATAA 58.022 37.037 0.00 0.00 0.00 1.90
970 1080 8.629821 ACATATTGCTCCCTACCTATCATAAT 57.370 34.615 0.00 0.00 0.00 1.28
971 1081 8.489489 ACATATTGCTCCCTACCTATCATAATG 58.511 37.037 0.00 0.00 0.00 1.90
972 1082 8.708378 CATATTGCTCCCTACCTATCATAATGA 58.292 37.037 0.00 0.00 0.00 2.57
973 1083 7.574021 ATTGCTCCCTACCTATCATAATGAA 57.426 36.000 0.00 0.00 0.00 2.57
974 1084 7.387265 TTGCTCCCTACCTATCATAATGAAA 57.613 36.000 0.00 0.00 0.00 2.69
975 1085 7.387265 TGCTCCCTACCTATCATAATGAAAA 57.613 36.000 0.00 0.00 0.00 2.29
976 1086 7.811282 TGCTCCCTACCTATCATAATGAAAAA 58.189 34.615 0.00 0.00 0.00 1.94
977 1087 7.939039 TGCTCCCTACCTATCATAATGAAAAAG 59.061 37.037 0.00 0.00 0.00 2.27
978 1088 7.094592 GCTCCCTACCTATCATAATGAAAAAGC 60.095 40.741 0.00 0.00 0.00 3.51
979 1089 7.231467 TCCCTACCTATCATAATGAAAAAGCC 58.769 38.462 0.00 0.00 0.00 4.35
980 1090 6.434340 CCCTACCTATCATAATGAAAAAGCCC 59.566 42.308 0.00 0.00 0.00 5.19
981 1091 7.004086 CCTACCTATCATAATGAAAAAGCCCA 58.996 38.462 0.00 0.00 0.00 5.36
982 1092 6.966534 ACCTATCATAATGAAAAAGCCCAG 57.033 37.500 0.00 0.00 0.00 4.45
983 1093 5.302823 ACCTATCATAATGAAAAAGCCCAGC 59.697 40.000 0.00 0.00 0.00 4.85
984 1094 4.677673 ATCATAATGAAAAAGCCCAGCC 57.322 40.909 0.00 0.00 0.00 4.85
985 1095 3.711863 TCATAATGAAAAAGCCCAGCCT 58.288 40.909 0.00 0.00 0.00 4.58
986 1096 4.095946 TCATAATGAAAAAGCCCAGCCTT 58.904 39.130 0.00 0.00 0.00 4.35
987 1097 2.845363 AATGAAAAAGCCCAGCCTTG 57.155 45.000 0.00 0.00 0.00 3.61
988 1098 0.322648 ATGAAAAAGCCCAGCCTTGC 59.677 50.000 0.00 0.00 0.00 4.01
989 1099 0.760189 TGAAAAAGCCCAGCCTTGCT 60.760 50.000 0.00 0.00 40.77 3.91
998 1108 2.204059 AGCCTTGCTGGTCTCCCT 60.204 61.111 0.00 0.00 37.57 4.20
999 1109 1.849823 AGCCTTGCTGGTCTCCCTT 60.850 57.895 0.00 0.00 37.57 3.95
1194 1579 6.081693 GCGAACAACGAGGTTATGTTATTTT 58.918 36.000 0.00 0.00 45.77 1.82
1300 1685 4.696455 AGCAATGCCAAAATATAAGGTGC 58.304 39.130 0.00 0.00 0.00 5.01
1351 1736 3.648339 AAATGTGTTGATCTGGTGCAC 57.352 42.857 8.80 8.80 0.00 4.57
1595 1983 5.724328 TGGCGCTTTCTAATCCTATATCTG 58.276 41.667 7.64 0.00 0.00 2.90
1612 2000 0.681564 CTGACCTACCCGCTCTGTCT 60.682 60.000 0.00 0.00 0.00 3.41
1613 2001 0.680280 TGACCTACCCGCTCTGTCTC 60.680 60.000 0.00 0.00 0.00 3.36
1741 2130 3.930634 AGCAAGCATGTTCTTTCTTCC 57.069 42.857 0.00 0.00 0.00 3.46
1858 2249 8.393959 ACCTTATATTTTTCTCTCTTCCTCCA 57.606 34.615 0.00 0.00 0.00 3.86
1946 2339 2.824041 CCGCCAGCGCCAAGTAAT 60.824 61.111 2.29 0.00 38.24 1.89
1957 2350 2.433491 AAGTAATCGCACGCGCCA 60.433 55.556 5.73 0.00 39.59 5.69
2020 2413 0.173935 CCGAGTACCGCATACAACCA 59.826 55.000 0.00 0.00 36.09 3.67
2027 2420 2.790433 ACCGCATACAACCACAAATCT 58.210 42.857 0.00 0.00 0.00 2.40
2123 2516 1.914263 TGTCGGATTCGGGGTTCCA 60.914 57.895 0.00 0.00 36.95 3.53
2142 2535 0.969894 ACAGACCCTTGAGAGGTTCG 59.030 55.000 0.00 0.00 39.34 3.95
2155 2548 1.671379 GGTTCGAACTCTGGGGTGC 60.671 63.158 26.32 4.07 0.00 5.01
2156 2549 1.070786 GTTCGAACTCTGGGGTGCA 59.929 57.895 20.97 0.00 0.00 4.57
2198 2591 1.095807 GCCTGCCTACCCAACGATTC 61.096 60.000 0.00 0.00 0.00 2.52
2201 2594 0.035820 TGCCTACCCAACGATTCCAC 60.036 55.000 0.00 0.00 0.00 4.02
2235 2628 1.525619 GAACCCAAAGAACACGAGACG 59.474 52.381 0.00 0.00 0.00 4.18
2238 2631 0.508641 CCAAAGAACACGAGACGCAG 59.491 55.000 0.00 0.00 0.00 5.18
2245 2638 0.318784 ACACGAGACGCAGAGGTTTC 60.319 55.000 0.00 0.00 0.00 2.78
2345 2738 2.234908 AGTACAGTGGATGAACAGCCTC 59.765 50.000 10.39 6.83 37.85 4.70
2392 2785 2.032681 GCTGGTGGGTGTGAGGAC 59.967 66.667 0.00 0.00 0.00 3.85
2501 2894 1.077716 GGAAGGGATCCCACAACGG 60.078 63.158 32.69 0.00 43.00 4.44
2510 2903 1.067250 CCCACAACGGCCAAGTTTG 59.933 57.895 2.24 2.48 30.96 2.93
2530 2923 4.563140 TGAAGGGGGACAAATAGTACAC 57.437 45.455 0.00 0.00 31.71 2.90
2548 2941 4.530710 ACACGCTATCCTGACAAAAGTA 57.469 40.909 0.00 0.00 0.00 2.24
2556 2949 3.650139 TCCTGACAAAAGTAGTCTTCGC 58.350 45.455 0.00 0.00 36.94 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
301 305 5.294306 CAGAGCATTAATCGGTGTACATTGT 59.706 40.000 0.00 0.00 0.00 2.71
302 306 5.523552 TCAGAGCATTAATCGGTGTACATTG 59.476 40.000 0.00 0.00 0.00 2.82
303 307 5.670485 TCAGAGCATTAATCGGTGTACATT 58.330 37.500 0.00 0.00 0.00 2.71
304 308 5.276461 TCAGAGCATTAATCGGTGTACAT 57.724 39.130 0.00 0.00 0.00 2.29
305 309 4.729227 TCAGAGCATTAATCGGTGTACA 57.271 40.909 0.00 0.00 0.00 2.90
306 310 6.257849 TCAAATCAGAGCATTAATCGGTGTAC 59.742 38.462 0.00 0.00 0.00 2.90
307 311 6.345298 TCAAATCAGAGCATTAATCGGTGTA 58.655 36.000 0.00 0.00 0.00 2.90
308 312 5.185454 TCAAATCAGAGCATTAATCGGTGT 58.815 37.500 0.00 0.00 0.00 4.16
309 313 5.739752 TCAAATCAGAGCATTAATCGGTG 57.260 39.130 0.00 0.00 0.00 4.94
310 314 6.757897 TTTCAAATCAGAGCATTAATCGGT 57.242 33.333 0.00 0.00 0.00 4.69
311 315 7.253422 AGTTTTCAAATCAGAGCATTAATCGG 58.747 34.615 0.00 0.00 0.00 4.18
312 316 9.941664 ATAGTTTTCAAATCAGAGCATTAATCG 57.058 29.630 0.00 0.00 0.00 3.34
355 359 9.801873 GAGCATTAATTGGTGTACATTGTTTAT 57.198 29.630 0.00 0.00 35.82 1.40
356 360 9.019656 AGAGCATTAATTGGTGTACATTGTTTA 57.980 29.630 0.00 0.00 35.82 2.01
357 361 7.814107 CAGAGCATTAATTGGTGTACATTGTTT 59.186 33.333 0.00 0.00 35.82 2.83
358 362 7.176515 TCAGAGCATTAATTGGTGTACATTGTT 59.823 33.333 0.00 0.00 35.82 2.83
664 774 2.092646 TGCTTGTGGTAGTGTTCACCTT 60.093 45.455 0.00 0.00 36.96 3.50
685 795 5.010617 CCTGTTTGCTTGTGGTATACCTTTT 59.989 40.000 22.41 0.00 36.82 2.27
686 796 4.522789 CCTGTTTGCTTGTGGTATACCTTT 59.477 41.667 22.41 0.00 36.82 3.11
687 797 4.079253 CCTGTTTGCTTGTGGTATACCTT 58.921 43.478 22.41 0.00 36.82 3.50
688 798 3.329520 TCCTGTTTGCTTGTGGTATACCT 59.670 43.478 22.41 0.00 36.82 3.08
689 799 3.681593 TCCTGTTTGCTTGTGGTATACC 58.318 45.455 15.50 15.50 0.00 2.73
690 800 3.689649 CCTCCTGTTTGCTTGTGGTATAC 59.310 47.826 0.00 0.00 0.00 1.47
691 801 3.585289 TCCTCCTGTTTGCTTGTGGTATA 59.415 43.478 0.00 0.00 0.00 1.47
692 802 2.375174 TCCTCCTGTTTGCTTGTGGTAT 59.625 45.455 0.00 0.00 0.00 2.73
693 803 1.771854 TCCTCCTGTTTGCTTGTGGTA 59.228 47.619 0.00 0.00 0.00 3.25
694 804 0.550914 TCCTCCTGTTTGCTTGTGGT 59.449 50.000 0.00 0.00 0.00 4.16
695 805 1.915141 ATCCTCCTGTTTGCTTGTGG 58.085 50.000 0.00 0.00 0.00 4.17
696 806 3.379372 CCATATCCTCCTGTTTGCTTGTG 59.621 47.826 0.00 0.00 0.00 3.33
697 807 3.624777 CCATATCCTCCTGTTTGCTTGT 58.375 45.455 0.00 0.00 0.00 3.16
698 808 2.360165 GCCATATCCTCCTGTTTGCTTG 59.640 50.000 0.00 0.00 0.00 4.01
699 809 2.243221 AGCCATATCCTCCTGTTTGCTT 59.757 45.455 0.00 0.00 0.00 3.91
700 810 1.849039 AGCCATATCCTCCTGTTTGCT 59.151 47.619 0.00 0.00 0.00 3.91
701 811 2.355010 AGCCATATCCTCCTGTTTGC 57.645 50.000 0.00 0.00 0.00 3.68
702 812 3.881688 CTCAAGCCATATCCTCCTGTTTG 59.118 47.826 0.00 0.00 0.00 2.93
703 813 3.686691 GCTCAAGCCATATCCTCCTGTTT 60.687 47.826 0.00 0.00 34.31 2.83
704 814 2.158696 GCTCAAGCCATATCCTCCTGTT 60.159 50.000 0.00 0.00 34.31 3.16
705 815 1.419387 GCTCAAGCCATATCCTCCTGT 59.581 52.381 0.00 0.00 34.31 4.00
706 816 1.607509 CGCTCAAGCCATATCCTCCTG 60.608 57.143 0.00 0.00 37.91 3.86
707 817 0.683973 CGCTCAAGCCATATCCTCCT 59.316 55.000 0.00 0.00 37.91 3.69
708 818 0.681733 TCGCTCAAGCCATATCCTCC 59.318 55.000 0.00 0.00 37.91 4.30
709 819 2.533266 TTCGCTCAAGCCATATCCTC 57.467 50.000 0.00 0.00 37.91 3.71
710 820 2.092968 TGTTTCGCTCAAGCCATATCCT 60.093 45.455 0.00 0.00 37.91 3.24
711 821 2.288666 TGTTTCGCTCAAGCCATATCC 58.711 47.619 0.00 0.00 37.91 2.59
712 822 3.126858 TGTTGTTTCGCTCAAGCCATATC 59.873 43.478 0.00 0.00 37.91 1.63
713 823 3.081061 TGTTGTTTCGCTCAAGCCATAT 58.919 40.909 0.00 0.00 37.91 1.78
714 824 2.483877 CTGTTGTTTCGCTCAAGCCATA 59.516 45.455 0.00 0.00 37.91 2.74
715 825 1.267806 CTGTTGTTTCGCTCAAGCCAT 59.732 47.619 0.00 0.00 37.91 4.40
716 826 0.662619 CTGTTGTTTCGCTCAAGCCA 59.337 50.000 0.00 0.00 37.91 4.75
717 827 0.944386 TCTGTTGTTTCGCTCAAGCC 59.056 50.000 0.00 0.00 37.91 4.35
718 828 2.755836 TTCTGTTGTTTCGCTCAAGC 57.244 45.000 0.00 0.00 37.78 4.01
719 829 4.739046 AGATTCTGTTGTTTCGCTCAAG 57.261 40.909 0.00 0.00 0.00 3.02
720 830 4.574421 TGAAGATTCTGTTGTTTCGCTCAA 59.426 37.500 0.00 0.00 0.00 3.02
721 831 4.126437 TGAAGATTCTGTTGTTTCGCTCA 58.874 39.130 0.00 0.00 0.00 4.26
722 832 4.706527 CTGAAGATTCTGTTGTTTCGCTC 58.293 43.478 0.00 0.00 0.00 5.03
723 833 3.058639 GCTGAAGATTCTGTTGTTTCGCT 60.059 43.478 2.09 0.00 0.00 4.93
724 834 3.229552 GCTGAAGATTCTGTTGTTTCGC 58.770 45.455 2.09 0.00 0.00 4.70
725 835 4.472691 TGCTGAAGATTCTGTTGTTTCG 57.527 40.909 2.09 0.00 0.00 3.46
726 836 5.581605 TGTTGCTGAAGATTCTGTTGTTTC 58.418 37.500 2.09 0.00 0.00 2.78
727 837 5.581126 TGTTGCTGAAGATTCTGTTGTTT 57.419 34.783 2.09 0.00 0.00 2.83
728 838 5.581126 TTGTTGCTGAAGATTCTGTTGTT 57.419 34.783 2.09 0.00 0.00 2.83
729 839 5.581126 TTTGTTGCTGAAGATTCTGTTGT 57.419 34.783 2.09 0.00 0.00 3.32
730 840 6.921857 AGATTTTGTTGCTGAAGATTCTGTTG 59.078 34.615 2.09 0.00 0.00 3.33
731 841 7.047460 AGATTTTGTTGCTGAAGATTCTGTT 57.953 32.000 2.09 0.00 0.00 3.16
732 842 6.263842 TGAGATTTTGTTGCTGAAGATTCTGT 59.736 34.615 2.09 0.00 0.00 3.41
733 843 6.675026 TGAGATTTTGTTGCTGAAGATTCTG 58.325 36.000 0.00 0.00 0.00 3.02
734 844 6.889301 TGAGATTTTGTTGCTGAAGATTCT 57.111 33.333 0.00 0.00 0.00 2.40
735 845 6.087291 CGTTGAGATTTTGTTGCTGAAGATTC 59.913 38.462 0.00 0.00 0.00 2.52
736 846 5.916883 CGTTGAGATTTTGTTGCTGAAGATT 59.083 36.000 0.00 0.00 0.00 2.40
737 847 5.455392 CGTTGAGATTTTGTTGCTGAAGAT 58.545 37.500 0.00 0.00 0.00 2.40
738 848 4.261155 CCGTTGAGATTTTGTTGCTGAAGA 60.261 41.667 0.00 0.00 0.00 2.87
739 849 3.976942 CCGTTGAGATTTTGTTGCTGAAG 59.023 43.478 0.00 0.00 0.00 3.02
740 850 3.380004 ACCGTTGAGATTTTGTTGCTGAA 59.620 39.130 0.00 0.00 0.00 3.02
741 851 2.948979 ACCGTTGAGATTTTGTTGCTGA 59.051 40.909 0.00 0.00 0.00 4.26
742 852 3.044986 CACCGTTGAGATTTTGTTGCTG 58.955 45.455 0.00 0.00 0.00 4.41
743 853 2.034558 CCACCGTTGAGATTTTGTTGCT 59.965 45.455 0.00 0.00 0.00 3.91
744 854 2.034053 TCCACCGTTGAGATTTTGTTGC 59.966 45.455 0.00 0.00 0.00 4.17
745 855 3.980646 TCCACCGTTGAGATTTTGTTG 57.019 42.857 0.00 0.00 0.00 3.33
746 856 4.440940 GGTTTCCACCGTTGAGATTTTGTT 60.441 41.667 0.00 0.00 31.60 2.83
747 857 3.067601 GGTTTCCACCGTTGAGATTTTGT 59.932 43.478 0.00 0.00 31.60 2.83
748 858 3.638484 GGTTTCCACCGTTGAGATTTTG 58.362 45.455 0.00 0.00 31.60 2.44
762 872 2.061848 TCTCCCTCATTGTGGTTTCCA 58.938 47.619 4.19 0.00 0.00 3.53
763 873 2.879103 TCTCCCTCATTGTGGTTTCC 57.121 50.000 4.19 0.00 0.00 3.13
764 874 3.282885 GGATCTCCCTCATTGTGGTTTC 58.717 50.000 4.19 0.00 0.00 2.78
765 875 2.356125 CGGATCTCCCTCATTGTGGTTT 60.356 50.000 4.19 0.00 0.00 3.27
766 876 1.210478 CGGATCTCCCTCATTGTGGTT 59.790 52.381 4.19 0.00 0.00 3.67
767 877 0.833287 CGGATCTCCCTCATTGTGGT 59.167 55.000 4.19 0.00 0.00 4.16
768 878 1.069823 CTCGGATCTCCCTCATTGTGG 59.930 57.143 0.00 0.00 0.00 4.17
769 879 1.069823 CCTCGGATCTCCCTCATTGTG 59.930 57.143 0.00 0.00 0.00 3.33
770 880 1.062886 TCCTCGGATCTCCCTCATTGT 60.063 52.381 0.00 0.00 0.00 2.71
771 881 1.617850 CTCCTCGGATCTCCCTCATTG 59.382 57.143 0.00 0.00 0.00 2.82
772 882 1.501170 TCTCCTCGGATCTCCCTCATT 59.499 52.381 0.00 0.00 0.00 2.57
773 883 1.153539 TCTCCTCGGATCTCCCTCAT 58.846 55.000 0.00 0.00 0.00 2.90
774 884 0.183971 GTCTCCTCGGATCTCCCTCA 59.816 60.000 0.00 0.00 0.00 3.86
775 885 0.476771 AGTCTCCTCGGATCTCCCTC 59.523 60.000 0.00 0.00 0.00 4.30
776 886 0.930726 AAGTCTCCTCGGATCTCCCT 59.069 55.000 0.00 0.00 0.00 4.20
777 887 1.036707 CAAGTCTCCTCGGATCTCCC 58.963 60.000 0.00 0.00 0.00 4.30
778 888 2.060050 TCAAGTCTCCTCGGATCTCC 57.940 55.000 0.00 0.00 0.00 3.71
779 889 4.664150 ATTTCAAGTCTCCTCGGATCTC 57.336 45.455 0.00 0.00 0.00 2.75
780 890 4.223923 ACAATTTCAAGTCTCCTCGGATCT 59.776 41.667 0.00 0.00 0.00 2.75
781 891 4.331168 CACAATTTCAAGTCTCCTCGGATC 59.669 45.833 0.00 0.00 0.00 3.36
782 892 4.256920 CACAATTTCAAGTCTCCTCGGAT 58.743 43.478 0.00 0.00 0.00 4.18
783 893 3.557054 CCACAATTTCAAGTCTCCTCGGA 60.557 47.826 0.00 0.00 0.00 4.55
784 894 2.744202 CCACAATTTCAAGTCTCCTCGG 59.256 50.000 0.00 0.00 0.00 4.63
785 895 3.664107 TCCACAATTTCAAGTCTCCTCG 58.336 45.455 0.00 0.00 0.00 4.63
786 896 4.693095 GTCTCCACAATTTCAAGTCTCCTC 59.307 45.833 0.00 0.00 0.00 3.71
787 897 4.349342 AGTCTCCACAATTTCAAGTCTCCT 59.651 41.667 0.00 0.00 0.00 3.69
788 898 4.453819 CAGTCTCCACAATTTCAAGTCTCC 59.546 45.833 0.00 0.00 0.00 3.71
789 899 4.453819 CCAGTCTCCACAATTTCAAGTCTC 59.546 45.833 0.00 0.00 0.00 3.36
790 900 4.103153 TCCAGTCTCCACAATTTCAAGTCT 59.897 41.667 0.00 0.00 0.00 3.24
791 901 4.389374 TCCAGTCTCCACAATTTCAAGTC 58.611 43.478 0.00 0.00 0.00 3.01
792 902 4.392940 CTCCAGTCTCCACAATTTCAAGT 58.607 43.478 0.00 0.00 0.00 3.16
793 903 3.755378 CCTCCAGTCTCCACAATTTCAAG 59.245 47.826 0.00 0.00 0.00 3.02
794 904 3.498481 CCCTCCAGTCTCCACAATTTCAA 60.498 47.826 0.00 0.00 0.00 2.69
795 905 2.040278 CCCTCCAGTCTCCACAATTTCA 59.960 50.000 0.00 0.00 0.00 2.69
796 906 2.040412 ACCCTCCAGTCTCCACAATTTC 59.960 50.000 0.00 0.00 0.00 2.17
797 907 2.065799 ACCCTCCAGTCTCCACAATTT 58.934 47.619 0.00 0.00 0.00 1.82
798 908 1.352352 CACCCTCCAGTCTCCACAATT 59.648 52.381 0.00 0.00 0.00 2.32
799 909 0.987294 CACCCTCCAGTCTCCACAAT 59.013 55.000 0.00 0.00 0.00 2.71
800 910 1.768684 GCACCCTCCAGTCTCCACAA 61.769 60.000 0.00 0.00 0.00 3.33
801 911 2.217038 GCACCCTCCAGTCTCCACA 61.217 63.158 0.00 0.00 0.00 4.17
802 912 1.557269 ATGCACCCTCCAGTCTCCAC 61.557 60.000 0.00 0.00 0.00 4.02
803 913 1.229625 ATGCACCCTCCAGTCTCCA 60.230 57.895 0.00 0.00 0.00 3.86
804 914 1.524482 GATGCACCCTCCAGTCTCC 59.476 63.158 0.00 0.00 0.00 3.71
805 915 0.980231 AGGATGCACCCTCCAGTCTC 60.980 60.000 0.00 0.00 40.05 3.36
806 916 1.081833 AGGATGCACCCTCCAGTCT 59.918 57.895 0.00 0.00 40.05 3.24
807 917 1.222936 CAGGATGCACCCTCCAGTC 59.777 63.158 0.00 0.00 40.05 3.51
808 918 3.408229 CAGGATGCACCCTCCAGT 58.592 61.111 0.00 0.00 40.05 4.00
819 929 3.200593 GCGACAGCAGGCAGGATG 61.201 66.667 0.00 0.00 44.35 3.51
837 947 3.330720 AGCCTGGGTCCCCGAAAG 61.331 66.667 5.13 0.00 39.42 2.62
838 948 3.646715 CAGCCTGGGTCCCCGAAA 61.647 66.667 5.13 0.00 39.42 3.46
839 949 4.649705 TCAGCCTGGGTCCCCGAA 62.650 66.667 5.13 0.00 39.42 4.30
842 952 2.905676 ATCTCTCAGCCTGGGTCCCC 62.906 65.000 5.13 0.00 0.00 4.81
843 953 0.985490 AATCTCTCAGCCTGGGTCCC 60.985 60.000 0.00 0.00 0.00 4.46
844 954 0.915364 AAATCTCTCAGCCTGGGTCC 59.085 55.000 0.00 0.00 0.00 4.46
845 955 2.797177 AAAATCTCTCAGCCTGGGTC 57.203 50.000 0.00 0.00 0.00 4.46
846 956 2.616510 CGAAAAATCTCTCAGCCTGGGT 60.617 50.000 0.00 0.00 0.00 4.51
847 957 2.012673 CGAAAAATCTCTCAGCCTGGG 58.987 52.381 0.00 0.00 0.00 4.45
848 958 1.399791 GCGAAAAATCTCTCAGCCTGG 59.600 52.381 0.00 0.00 0.00 4.45
849 959 1.399791 GGCGAAAAATCTCTCAGCCTG 59.600 52.381 0.00 0.00 39.92 4.85
850 960 1.743996 GGCGAAAAATCTCTCAGCCT 58.256 50.000 0.00 0.00 39.92 4.58
851 961 1.399791 CAGGCGAAAAATCTCTCAGCC 59.600 52.381 0.00 0.00 43.07 4.85
852 962 2.079925 ACAGGCGAAAAATCTCTCAGC 58.920 47.619 0.00 0.00 0.00 4.26
853 963 2.159599 GCACAGGCGAAAAATCTCTCAG 60.160 50.000 0.00 0.00 0.00 3.35
854 964 1.806542 GCACAGGCGAAAAATCTCTCA 59.193 47.619 0.00 0.00 0.00 3.27
855 965 2.534231 GCACAGGCGAAAAATCTCTC 57.466 50.000 0.00 0.00 0.00 3.20
867 977 0.036022 AAGAAGAGGACAGCACAGGC 59.964 55.000 0.00 0.00 41.61 4.85
868 978 2.557920 AAAGAAGAGGACAGCACAGG 57.442 50.000 0.00 0.00 0.00 4.00
869 979 3.737850 AGAAAAGAAGAGGACAGCACAG 58.262 45.455 0.00 0.00 0.00 3.66
870 980 3.845781 AGAAAAGAAGAGGACAGCACA 57.154 42.857 0.00 0.00 0.00 4.57
871 981 4.384940 AGAAGAAAAGAAGAGGACAGCAC 58.615 43.478 0.00 0.00 0.00 4.40
872 982 4.503991 GGAGAAGAAAAGAAGAGGACAGCA 60.504 45.833 0.00 0.00 0.00 4.41
873 983 4.000325 GGAGAAGAAAAGAAGAGGACAGC 59.000 47.826 0.00 0.00 0.00 4.40
874 984 5.482163 AGGAGAAGAAAAGAAGAGGACAG 57.518 43.478 0.00 0.00 0.00 3.51
875 985 5.896073 AAGGAGAAGAAAAGAAGAGGACA 57.104 39.130 0.00 0.00 0.00 4.02
876 986 8.678593 TTAAAAGGAGAAGAAAAGAAGAGGAC 57.321 34.615 0.00 0.00 0.00 3.85
877 987 9.868160 AATTAAAAGGAGAAGAAAAGAAGAGGA 57.132 29.630 0.00 0.00 0.00 3.71
883 993 9.868160 AGAGGAAATTAAAAGGAGAAGAAAAGA 57.132 29.630 0.00 0.00 0.00 2.52
886 996 9.868160 AGAAGAGGAAATTAAAAGGAGAAGAAA 57.132 29.630 0.00 0.00 0.00 2.52
887 997 9.868160 AAGAAGAGGAAATTAAAAGGAGAAGAA 57.132 29.630 0.00 0.00 0.00 2.52
888 998 9.868160 AAAGAAGAGGAAATTAAAAGGAGAAGA 57.132 29.630 0.00 0.00 0.00 2.87
913 1023 5.951747 CCAAGATGGTCCTAAGGATGAAAAA 59.048 40.000 0.00 0.00 32.73 1.94
914 1024 5.509498 CCAAGATGGTCCTAAGGATGAAAA 58.491 41.667 0.00 0.00 32.73 2.29
915 1025 5.116084 CCAAGATGGTCCTAAGGATGAAA 57.884 43.478 0.00 0.00 32.73 2.69
916 1026 4.778213 CCAAGATGGTCCTAAGGATGAA 57.222 45.455 0.00 0.00 32.73 2.57
929 1039 7.164122 AGCAATATGTACATAGACCAAGATGG 58.836 38.462 19.80 1.93 45.02 3.51
930 1040 7.332926 GGAGCAATATGTACATAGACCAAGATG 59.667 40.741 19.80 9.76 0.00 2.90
931 1041 7.390027 GGAGCAATATGTACATAGACCAAGAT 58.610 38.462 19.80 5.79 0.00 2.40
932 1042 6.239600 GGGAGCAATATGTACATAGACCAAGA 60.240 42.308 19.80 0.00 0.00 3.02
933 1043 5.934625 GGGAGCAATATGTACATAGACCAAG 59.065 44.000 19.80 7.81 0.00 3.61
934 1044 5.606749 AGGGAGCAATATGTACATAGACCAA 59.393 40.000 19.80 0.00 0.00 3.67
935 1045 5.155161 AGGGAGCAATATGTACATAGACCA 58.845 41.667 19.80 0.00 0.00 4.02
936 1046 5.746990 AGGGAGCAATATGTACATAGACC 57.253 43.478 19.80 15.96 0.00 3.85
937 1047 6.437793 AGGTAGGGAGCAATATGTACATAGAC 59.562 42.308 19.80 11.81 0.00 2.59
938 1048 6.562228 AGGTAGGGAGCAATATGTACATAGA 58.438 40.000 19.80 1.14 0.00 1.98
939 1049 6.859112 AGGTAGGGAGCAATATGTACATAG 57.141 41.667 19.80 9.31 0.00 2.23
940 1050 8.119891 TGATAGGTAGGGAGCAATATGTACATA 58.880 37.037 17.65 17.65 0.00 2.29
941 1051 6.959954 TGATAGGTAGGGAGCAATATGTACAT 59.040 38.462 13.93 13.93 0.00 2.29
942 1052 6.319715 TGATAGGTAGGGAGCAATATGTACA 58.680 40.000 0.00 0.00 0.00 2.90
943 1053 6.852420 TGATAGGTAGGGAGCAATATGTAC 57.148 41.667 0.00 0.00 0.00 2.90
944 1054 9.729550 ATTATGATAGGTAGGGAGCAATATGTA 57.270 33.333 0.00 0.00 0.00 2.29
945 1055 8.489489 CATTATGATAGGTAGGGAGCAATATGT 58.511 37.037 0.00 0.00 0.00 2.29
946 1056 8.708378 TCATTATGATAGGTAGGGAGCAATATG 58.292 37.037 0.00 0.00 0.00 1.78
947 1057 8.860517 TCATTATGATAGGTAGGGAGCAATAT 57.139 34.615 0.00 0.00 0.00 1.28
948 1058 8.679344 TTCATTATGATAGGTAGGGAGCAATA 57.321 34.615 0.00 0.00 0.00 1.90
949 1059 7.574021 TTCATTATGATAGGTAGGGAGCAAT 57.426 36.000 0.00 0.00 0.00 3.56
950 1060 7.387265 TTTCATTATGATAGGTAGGGAGCAA 57.613 36.000 0.00 0.00 0.00 3.91
951 1061 7.387265 TTTTCATTATGATAGGTAGGGAGCA 57.613 36.000 0.00 0.00 0.00 4.26
952 1062 7.094592 GCTTTTTCATTATGATAGGTAGGGAGC 60.095 40.741 0.00 0.00 0.00 4.70
953 1063 7.391833 GGCTTTTTCATTATGATAGGTAGGGAG 59.608 40.741 0.00 0.00 0.00 4.30
954 1064 7.231467 GGCTTTTTCATTATGATAGGTAGGGA 58.769 38.462 0.00 0.00 0.00 4.20
955 1065 6.434340 GGGCTTTTTCATTATGATAGGTAGGG 59.566 42.308 0.00 0.00 0.00 3.53
956 1066 7.004086 TGGGCTTTTTCATTATGATAGGTAGG 58.996 38.462 0.00 0.00 0.00 3.18
957 1067 7.308830 GCTGGGCTTTTTCATTATGATAGGTAG 60.309 40.741 0.00 0.00 0.00 3.18
958 1068 6.490040 GCTGGGCTTTTTCATTATGATAGGTA 59.510 38.462 0.00 0.00 0.00 3.08
959 1069 5.302823 GCTGGGCTTTTTCATTATGATAGGT 59.697 40.000 0.00 0.00 0.00 3.08
960 1070 5.279156 GGCTGGGCTTTTTCATTATGATAGG 60.279 44.000 0.00 0.00 0.00 2.57
961 1071 5.537674 AGGCTGGGCTTTTTCATTATGATAG 59.462 40.000 0.00 0.00 0.00 2.08
962 1072 5.457686 AGGCTGGGCTTTTTCATTATGATA 58.542 37.500 0.00 0.00 0.00 2.15
963 1073 4.292643 AGGCTGGGCTTTTTCATTATGAT 58.707 39.130 0.00 0.00 0.00 2.45
964 1074 3.711863 AGGCTGGGCTTTTTCATTATGA 58.288 40.909 0.00 0.00 0.00 2.15
965 1075 4.186159 CAAGGCTGGGCTTTTTCATTATG 58.814 43.478 6.67 0.00 0.00 1.90
966 1076 3.369787 GCAAGGCTGGGCTTTTTCATTAT 60.370 43.478 6.67 0.00 0.00 1.28
967 1077 2.028203 GCAAGGCTGGGCTTTTTCATTA 60.028 45.455 6.67 0.00 0.00 1.90
968 1078 1.271001 GCAAGGCTGGGCTTTTTCATT 60.271 47.619 6.67 0.00 0.00 2.57
969 1079 0.322648 GCAAGGCTGGGCTTTTTCAT 59.677 50.000 6.67 0.00 0.00 2.57
970 1080 0.760189 AGCAAGGCTGGGCTTTTTCA 60.760 50.000 8.02 0.00 37.57 2.69
971 1081 2.052779 AGCAAGGCTGGGCTTTTTC 58.947 52.632 8.02 0.63 37.57 2.29
972 1082 4.300814 AGCAAGGCTGGGCTTTTT 57.699 50.000 8.02 0.00 37.57 1.94
1005 1115 2.871096 TCGGTGCTCTTTGGGTATTT 57.129 45.000 0.00 0.00 0.00 1.40
1006 1116 2.238646 TGATCGGTGCTCTTTGGGTATT 59.761 45.455 0.00 0.00 0.00 1.89
1194 1579 8.146053 TCAAGGAGAATAAGGAAGACATGTAA 57.854 34.615 0.00 0.00 0.00 2.41
1664 2052 6.035650 CGTGAAAATGGATGTATGTAGACGTT 59.964 38.462 0.00 0.00 0.00 3.99
1685 2073 3.571571 CGTCCAGAATTACTTGTCGTGA 58.428 45.455 0.00 0.00 0.00 4.35
1741 2130 4.869861 TCCATCCATATCAATCGCAATACG 59.130 41.667 0.00 0.00 45.62 3.06
1830 2221 9.892130 GAGGAAGAGAGAAAAATATAAGGTTCA 57.108 33.333 0.00 0.00 0.00 3.18
1858 2249 4.345257 ACCAGACTAAGTCACTGACATGTT 59.655 41.667 11.80 0.21 34.60 2.71
1957 2350 1.072331 GTGGTGGATCTGTTGACTGGT 59.928 52.381 0.00 0.00 0.00 4.00
2012 2405 3.009723 CAGCGGAGATTTGTGGTTGTAT 58.990 45.455 0.00 0.00 0.00 2.29
2020 2413 2.436646 CCGGCAGCGGAGATTTGT 60.437 61.111 0.52 0.00 0.00 2.83
2142 2535 1.961277 CGTGTGCACCCCAGAGTTC 60.961 63.158 15.69 0.00 0.00 3.01
2155 2548 2.610727 GGGAGAAAGAGTCCTTCGTGTG 60.611 54.545 0.00 0.00 34.16 3.82
2156 2549 1.619332 GGGAGAAAGAGTCCTTCGTGT 59.381 52.381 0.00 0.00 34.16 4.49
2198 2591 4.554363 CGTCGAGCTAGGCCGTGG 62.554 72.222 0.00 0.00 0.00 4.94
2201 2594 2.278013 GTTCGTCGAGCTAGGCCG 60.278 66.667 0.00 0.00 0.00 6.13
2235 2628 2.338500 CGAACCAGTAGAAACCTCTGC 58.662 52.381 0.00 0.00 34.68 4.26
2238 2631 1.675116 GCCCGAACCAGTAGAAACCTC 60.675 57.143 0.00 0.00 0.00 3.85
2245 2638 2.267961 GGTGGCCCGAACCAGTAG 59.732 66.667 0.00 0.00 41.46 2.57
2286 2679 0.323725 GAGGCAATCCACCACCACAT 60.324 55.000 0.00 0.00 33.74 3.21
2345 2738 2.233431 CTCAAGAACACCTCTCCTCCTG 59.767 54.545 0.00 0.00 31.02 3.86
2501 2894 0.469144 TGTCCCCCTTCAAACTTGGC 60.469 55.000 0.00 0.00 0.00 4.52
2510 2903 3.528532 CGTGTACTATTTGTCCCCCTTC 58.471 50.000 0.00 0.00 0.00 3.46
2530 2923 5.000012 AGACTACTTTTGTCAGGATAGCG 58.000 43.478 0.00 0.00 36.94 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.