Multiple sequence alignment - TraesCS7D01G314400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G314400 chr7D 100.000 3568 0 0 1 3568 400172335 400168768 0.000000e+00 6589.0
1 TraesCS7D01G314400 chr7D 96.899 129 3 1 3440 3568 24980172 24980299 7.760000e-52 215.0
2 TraesCS7D01G314400 chr7D 89.881 168 13 3 3274 3438 509624845 509625011 2.790000e-51 213.0
3 TraesCS7D01G314400 chr7B 95.356 2433 71 18 406 2805 409712940 409710517 0.000000e+00 3829.0
4 TraesCS7D01G314400 chr7B 91.892 407 24 6 14 411 409724723 409724317 8.650000e-156 560.0
5 TraesCS7D01G314400 chr7B 82.967 182 15 5 3273 3438 138446276 138446457 2.220000e-32 150.0
6 TraesCS7D01G314400 chr7A 96.366 1954 57 4 856 2804 457867527 457865583 0.000000e+00 3203.0
7 TraesCS7D01G314400 chr7A 90.886 790 40 13 1 762 457868709 457867924 0.000000e+00 1031.0
8 TraesCS7D01G314400 chr7A 88.430 363 27 3 2904 3266 457854394 457854047 1.180000e-114 424.0
9 TraesCS7D01G314400 chr7A 91.379 116 9 1 2801 2915 457854537 457854422 1.330000e-34 158.0
10 TraesCS7D01G314400 chr7A 97.647 85 2 0 769 853 457867877 457867793 2.870000e-31 147.0
11 TraesCS7D01G314400 chr5B 78.295 516 97 13 1290 1796 314193697 314193188 5.750000e-83 318.0
12 TraesCS7D01G314400 chr5B 84.177 316 49 1 2232 2546 314278097 314278412 4.480000e-79 305.0
13 TraesCS7D01G314400 chr5B 77.176 517 97 20 1290 1794 314276966 314277473 7.540000e-72 281.0
14 TraesCS7D01G314400 chr5B 83.929 168 21 5 3274 3436 686420136 686420302 4.770000e-34 156.0
15 TraesCS7D01G314400 chr5A 78.143 517 96 15 1290 1796 365253856 365254365 2.670000e-81 313.0
16 TraesCS7D01G314400 chr5A 84.665 313 46 2 2235 2546 365255011 365255322 9.620000e-81 311.0
17 TraesCS7D01G314400 chr5A 83.912 317 48 3 2232 2546 365600913 365601228 2.080000e-77 300.0
18 TraesCS7D01G314400 chr5A 77.756 517 94 20 1290 1794 365599788 365600295 7.490000e-77 298.0
19 TraesCS7D01G314400 chr5A 88.793 116 13 0 3323 3438 501849140 501849255 3.710000e-30 143.0
20 TraesCS7D01G314400 chr5D 84.098 327 42 9 2225 2546 276918961 276919282 1.240000e-79 307.0
21 TraesCS7D01G314400 chr5D 97.674 129 3 0 3440 3568 231786020 231786148 4.640000e-54 222.0
22 TraesCS7D01G314400 chr5D 97.674 129 2 1 3441 3568 319237673 319237801 1.670000e-53 220.0
23 TraesCS7D01G314400 chr5D 96.899 129 4 0 3440 3568 7486774 7486902 2.160000e-52 217.0
24 TraesCS7D01G314400 chr5D 96.183 131 3 2 3440 3568 24075139 24075269 2.790000e-51 213.0
25 TraesCS7D01G314400 chr5D 86.747 166 21 1 3274 3438 437979461 437979626 2.190000e-42 183.0
26 TraesCS7D01G314400 chr2D 98.462 130 1 1 3440 3568 592646872 592646743 9.970000e-56 228.0
27 TraesCS7D01G314400 chr2D 97.674 129 3 0 3440 3568 189368925 189368797 4.640000e-54 222.0
28 TraesCS7D01G314400 chr2D 77.320 194 36 7 1291 1477 630424695 630424887 1.350000e-19 108.0
29 TraesCS7D01G314400 chr4D 89.655 174 15 2 3266 3438 490140649 490140820 6.000000e-53 219.0
30 TraesCS7D01G314400 chr4D 96.000 50 2 0 3274 3323 354049010 354048961 8.210000e-12 82.4
31 TraesCS7D01G314400 chrUn 96.899 129 4 0 3440 3568 30393034 30392906 2.160000e-52 217.0
32 TraesCS7D01G314400 chr6D 96.899 129 3 1 3440 3568 450250644 450250771 7.760000e-52 215.0
33 TraesCS7D01G314400 chr6D 88.889 117 12 1 3322 3438 263994525 263994640 3.710000e-30 143.0
34 TraesCS7D01G314400 chr1B 76.800 375 66 16 1291 1653 91882036 91881671 1.310000e-44 191.0
35 TraesCS7D01G314400 chr1B 80.357 224 37 7 1285 1506 608950038 608950256 2.850000e-36 163.0
36 TraesCS7D01G314400 chr1B 89.474 114 10 2 3326 3438 610020198 610020086 3.710000e-30 143.0
37 TraesCS7D01G314400 chr1D 81.651 218 33 7 1438 1653 56874782 56874570 1.320000e-39 174.0
38 TraesCS7D01G314400 chr1D 75.335 373 75 15 1291 1653 56429735 56429370 2.850000e-36 163.0
39 TraesCS7D01G314400 chr1D 79.556 225 37 9 1285 1506 445588729 445588947 6.170000e-33 152.0
40 TraesCS7D01G314400 chr1A 79.913 229 37 9 1281 1506 541770616 541770838 3.690000e-35 159.0
41 TraesCS7D01G314400 chr1A 96.364 55 2 0 3274 3328 497758860 497758806 1.360000e-14 91.6
42 TraesCS7D01G314400 chr2B 90.090 111 8 2 3323 3431 23780179 23780288 1.340000e-29 141.0
43 TraesCS7D01G314400 chr2B 96.552 58 2 0 3272 3329 583521415 583521358 2.930000e-16 97.1
44 TraesCS7D01G314400 chr2B 76.289 194 38 7 1291 1477 773169105 773169297 2.930000e-16 97.1
45 TraesCS7D01G314400 chr2A 87.097 93 12 0 3339 3431 5765245 5765153 4.870000e-19 106.0
46 TraesCS7D01G314400 chr2A 76.471 187 36 7 1291 1470 760598298 760598483 1.050000e-15 95.3
47 TraesCS7D01G314400 chr3B 78.235 170 17 8 3273 3422 420902288 420902457 1.360000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G314400 chr7D 400168768 400172335 3567 True 6589.000000 6589 100.000000 1 3568 1 chr7D.!!$R1 3567
1 TraesCS7D01G314400 chr7B 409710517 409712940 2423 True 3829.000000 3829 95.356000 406 2805 1 chr7B.!!$R1 2399
2 TraesCS7D01G314400 chr7A 457865583 457868709 3126 True 1460.333333 3203 94.966333 1 2804 3 chr7A.!!$R2 2803
3 TraesCS7D01G314400 chr5B 314193188 314193697 509 True 318.000000 318 78.295000 1290 1796 1 chr5B.!!$R1 506
4 TraesCS7D01G314400 chr5B 314276966 314278412 1446 False 293.000000 305 80.676500 1290 2546 2 chr5B.!!$F2 1256
5 TraesCS7D01G314400 chr5A 365253856 365255322 1466 False 312.000000 313 81.404000 1290 2546 2 chr5A.!!$F2 1256
6 TraesCS7D01G314400 chr5A 365599788 365601228 1440 False 299.000000 300 80.834000 1290 2546 2 chr5A.!!$F3 1256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.179129 GACATGCTTGCGAATTGGGG 60.179 55.0 0.0 0.0 0.0 4.96 F
252 288 0.320697 GGAGACTGTAACCGCCAACT 59.679 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 2324 1.190763 GTCATGTACGACGCGTTGTTT 59.809 47.619 35.08 18.52 41.54 2.83 R
2640 3238 4.100084 TCTGCCATGGTGCTCCCG 62.100 66.667 14.67 0.00 35.15 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.179129 GACATGCTTGCGAATTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
87 88 4.021280 TGAATGATCCATGTTTTGGTGTGG 60.021 41.667 0.00 0.00 46.52 4.17
89 90 1.895131 GATCCATGTTTTGGTGTGGCT 59.105 47.619 0.00 0.00 46.52 4.75
130 131 0.935898 CAGTGATCATGCCTTCTCGC 59.064 55.000 0.00 0.00 0.00 5.03
160 180 1.681166 GCATGTGGCAAGAGAGATGGT 60.681 52.381 0.00 0.00 43.97 3.55
161 181 2.719739 CATGTGGCAAGAGAGATGGTT 58.280 47.619 0.00 0.00 0.00 3.67
162 182 2.189594 TGTGGCAAGAGAGATGGTTG 57.810 50.000 0.00 0.00 0.00 3.77
163 183 1.271543 TGTGGCAAGAGAGATGGTTGG 60.272 52.381 0.00 0.00 0.00 3.77
164 184 1.003580 GTGGCAAGAGAGATGGTTGGA 59.996 52.381 0.00 0.00 0.00 3.53
165 185 1.704628 TGGCAAGAGAGATGGTTGGAA 59.295 47.619 0.00 0.00 0.00 3.53
166 186 2.087646 GGCAAGAGAGATGGTTGGAAC 58.912 52.381 0.00 0.00 0.00 3.62
252 288 0.320697 GGAGACTGTAACCGCCAACT 59.679 55.000 0.00 0.00 0.00 3.16
282 318 3.372554 GAACGGGGAAGCCGGAGAG 62.373 68.421 5.05 0.00 34.73 3.20
496 532 3.664107 GGTCAATCCCAAAAGAAAAGGC 58.336 45.455 0.00 0.00 0.00 4.35
500 540 5.588246 GTCAATCCCAAAAGAAAAGGCAAAA 59.412 36.000 0.00 0.00 0.00 2.44
631 671 2.413765 CGGCTGATTTTGCTCACAAGAG 60.414 50.000 0.00 0.00 44.96 2.85
762 806 0.747283 CAGAGGGGCAAGCAAGCTAG 60.747 60.000 0.00 0.00 34.17 3.42
763 807 1.204113 AGAGGGGCAAGCAAGCTAGT 61.204 55.000 0.00 0.00 34.17 2.57
765 809 1.002134 GGGGCAAGCAAGCTAGTCA 60.002 57.895 0.00 0.00 34.17 3.41
767 811 1.247567 GGGCAAGCAAGCTAGTCAAA 58.752 50.000 0.00 0.00 34.17 2.69
818 902 1.676967 CCTGCTTGCCTTGTCTCCC 60.677 63.158 0.00 0.00 0.00 4.30
821 905 2.348998 CTTGCCTTGTCTCCCGCT 59.651 61.111 0.00 0.00 0.00 5.52
938 1289 0.954452 GCACCAAGTAAGCAAGCAGT 59.046 50.000 0.00 0.00 0.00 4.40
959 1310 3.127533 GCAGTAGCCCCACAAGCG 61.128 66.667 0.00 0.00 34.64 4.68
1286 1637 4.961511 TGACCTCGCCGTGTGTGC 62.962 66.667 0.00 0.00 0.00 4.57
2057 2558 3.308014 GACGAGCAGCTTCCAGGCT 62.308 63.158 0.00 0.00 44.10 4.58
2640 3238 0.376152 CGATTGGCATGTGACAGAGC 59.624 55.000 4.45 4.45 32.66 4.09
2691 3289 4.704103 AGCTGAGCTCCCCCGTCA 62.704 66.667 12.15 0.00 30.62 4.35
2762 3360 2.874701 CGTATGCAGGCTTTCTTGCTAT 59.125 45.455 0.00 0.00 0.00 2.97
2765 3363 2.362736 TGCAGGCTTTCTTGCTATCTG 58.637 47.619 1.37 0.00 0.00 2.90
2799 3397 8.163408 TGCTAGGTGCCAATTATCAAAGTATAT 58.837 33.333 0.00 0.00 42.00 0.86
2855 3453 9.651913 TTGGCTTGATGAAATTATTTTAAGTCC 57.348 29.630 0.00 3.05 0.00 3.85
2856 3454 8.811017 TGGCTTGATGAAATTATTTTAAGTCCA 58.189 29.630 0.00 5.01 0.00 4.02
2857 3455 9.651913 GGCTTGATGAAATTATTTTAAGTCCAA 57.348 29.630 0.00 0.00 0.00 3.53
2919 3517 9.586435 GTAACTCATCTTTGATTTAAATTGGGG 57.414 33.333 1.43 0.00 31.25 4.96
2920 3518 7.797121 ACTCATCTTTGATTTAAATTGGGGT 57.203 32.000 1.43 0.00 0.00 4.95
2921 3519 8.206126 ACTCATCTTTGATTTAAATTGGGGTT 57.794 30.769 1.43 0.00 0.00 4.11
2922 3520 8.659527 ACTCATCTTTGATTTAAATTGGGGTTT 58.340 29.630 1.43 0.00 0.00 3.27
2937 3535 8.715190 AATTGGGGTTTAAACTACAAGTATGT 57.285 30.769 22.75 10.91 43.74 2.29
2938 3536 8.715190 ATTGGGGTTTAAACTACAAGTATGTT 57.285 30.769 22.75 10.43 41.05 2.71
2939 3537 9.810870 ATTGGGGTTTAAACTACAAGTATGTTA 57.189 29.630 22.75 7.63 41.05 2.41
2940 3538 9.810870 TTGGGGTTTAAACTACAAGTATGTTAT 57.189 29.630 17.50 0.00 41.05 1.89
2941 3539 9.810870 TGGGGTTTAAACTACAAGTATGTTATT 57.189 29.630 17.50 0.00 41.05 1.40
2981 3579 9.723601 TTAATGAAAATTTTATTGCAGCTTCCT 57.276 25.926 2.75 0.00 0.00 3.36
2983 3581 9.723601 AATGAAAATTTTATTGCAGCTTCCTAA 57.276 25.926 2.75 0.00 0.00 2.69
2984 3582 9.895138 ATGAAAATTTTATTGCAGCTTCCTAAT 57.105 25.926 2.75 0.00 0.00 1.73
2993 3591 9.806448 TTATTGCAGCTTCCTAATATTATTGGA 57.194 29.630 1.63 0.00 0.00 3.53
2994 3592 8.710749 ATTGCAGCTTCCTAATATTATTGGAA 57.289 30.769 13.02 13.02 37.11 3.53
2995 3593 8.710749 TTGCAGCTTCCTAATATTATTGGAAT 57.289 30.769 13.72 1.94 37.85 3.01
2996 3594 8.114331 TGCAGCTTCCTAATATTATTGGAATG 57.886 34.615 13.72 11.80 37.85 2.67
2997 3595 7.031975 GCAGCTTCCTAATATTATTGGAATGC 58.968 38.462 17.59 17.59 37.40 3.56
2998 3596 7.094032 GCAGCTTCCTAATATTATTGGAATGCT 60.094 37.037 21.29 20.78 39.52 3.79
2999 3597 9.453572 CAGCTTCCTAATATTATTGGAATGCTA 57.546 33.333 22.60 6.26 39.07 3.49
3000 3598 9.678260 AGCTTCCTAATATTATTGGAATGCTAG 57.322 33.333 22.22 12.37 39.18 3.42
3001 3599 9.454859 GCTTCCTAATATTATTGGAATGCTAGT 57.545 33.333 13.72 0.00 37.85 2.57
3013 3611 8.985315 ATTGGAATGCTAGTCAAGATATTTCA 57.015 30.769 0.00 0.00 0.00 2.69
3014 3612 7.792374 TGGAATGCTAGTCAAGATATTTCAC 57.208 36.000 0.00 0.00 0.00 3.18
3015 3613 7.337938 TGGAATGCTAGTCAAGATATTTCACA 58.662 34.615 0.00 0.00 0.00 3.58
3016 3614 7.828717 TGGAATGCTAGTCAAGATATTTCACAA 59.171 33.333 0.00 0.00 0.00 3.33
3017 3615 8.125448 GGAATGCTAGTCAAGATATTTCACAAC 58.875 37.037 0.00 0.00 0.00 3.32
3018 3616 6.647212 TGCTAGTCAAGATATTTCACAACG 57.353 37.500 0.00 0.00 0.00 4.10
3019 3617 6.394809 TGCTAGTCAAGATATTTCACAACGA 58.605 36.000 0.00 0.00 0.00 3.85
3020 3618 6.531594 TGCTAGTCAAGATATTTCACAACGAG 59.468 38.462 0.00 0.00 0.00 4.18
3021 3619 6.752351 GCTAGTCAAGATATTTCACAACGAGA 59.248 38.462 0.00 0.00 0.00 4.04
3022 3620 7.275779 GCTAGTCAAGATATTTCACAACGAGAA 59.724 37.037 0.00 0.00 0.00 2.87
3023 3621 7.962964 AGTCAAGATATTTCACAACGAGAAA 57.037 32.000 0.00 0.00 39.11 2.52
3024 3622 8.553459 AGTCAAGATATTTCACAACGAGAAAT 57.447 30.769 6.43 6.43 45.05 2.17
3025 3623 9.003658 AGTCAAGATATTTCACAACGAGAAATT 57.996 29.630 6.48 0.00 41.54 1.82
3026 3624 9.267096 GTCAAGATATTTCACAACGAGAAATTC 57.733 33.333 6.48 5.18 41.54 2.17
3027 3625 9.219603 TCAAGATATTTCACAACGAGAAATTCT 57.780 29.630 0.00 0.00 41.54 2.40
3028 3626 9.483062 CAAGATATTTCACAACGAGAAATTCTC 57.517 33.333 12.74 12.74 41.54 2.87
3029 3627 9.442047 AAGATATTTCACAACGAGAAATTCTCT 57.558 29.630 19.40 5.47 41.54 3.10
3030 3628 9.092876 AGATATTTCACAACGAGAAATTCTCTC 57.907 33.333 19.40 6.85 46.35 3.20
3088 3686 9.695526 TGTTATTGAGAGTTGAAAATCATTTGG 57.304 29.630 0.00 0.00 0.00 3.28
3089 3687 9.143631 GTTATTGAGAGTTGAAAATCATTTGGG 57.856 33.333 0.00 0.00 0.00 4.12
3090 3688 5.726980 TGAGAGTTGAAAATCATTTGGGG 57.273 39.130 0.00 0.00 0.00 4.96
3091 3689 5.392995 TGAGAGTTGAAAATCATTTGGGGA 58.607 37.500 0.00 0.00 0.00 4.81
3092 3690 5.477984 TGAGAGTTGAAAATCATTTGGGGAG 59.522 40.000 0.00 0.00 0.00 4.30
3093 3691 5.397360 AGAGTTGAAAATCATTTGGGGAGT 58.603 37.500 0.00 0.00 0.00 3.85
3094 3692 5.840693 AGAGTTGAAAATCATTTGGGGAGTT 59.159 36.000 0.00 0.00 0.00 3.01
3095 3693 6.327365 AGAGTTGAAAATCATTTGGGGAGTTT 59.673 34.615 0.00 0.00 35.52 2.66
3096 3694 6.899089 AGTTGAAAATCATTTGGGGAGTTTT 58.101 32.000 0.00 0.00 33.28 2.43
3097 3695 6.767423 AGTTGAAAATCATTTGGGGAGTTTTG 59.233 34.615 0.00 0.00 33.28 2.44
3098 3696 6.245890 TGAAAATCATTTGGGGAGTTTTGT 57.754 33.333 0.00 0.00 33.28 2.83
3099 3697 7.366847 TGAAAATCATTTGGGGAGTTTTGTA 57.633 32.000 0.00 0.00 33.28 2.41
3100 3698 7.213678 TGAAAATCATTTGGGGAGTTTTGTAC 58.786 34.615 0.00 0.00 33.28 2.90
3101 3699 6.739331 AAATCATTTGGGGAGTTTTGTACA 57.261 33.333 0.00 0.00 0.00 2.90
3102 3700 6.933514 AATCATTTGGGGAGTTTTGTACAT 57.066 33.333 0.00 0.00 0.00 2.29
3103 3701 6.933514 ATCATTTGGGGAGTTTTGTACATT 57.066 33.333 0.00 0.00 0.00 2.71
3104 3702 8.429237 AATCATTTGGGGAGTTTTGTACATTA 57.571 30.769 0.00 0.00 0.00 1.90
3105 3703 7.841282 TCATTTGGGGAGTTTTGTACATTAA 57.159 32.000 0.00 0.00 0.00 1.40
3106 3704 8.251383 TCATTTGGGGAGTTTTGTACATTAAA 57.749 30.769 0.00 0.00 0.00 1.52
3107 3705 8.705594 TCATTTGGGGAGTTTTGTACATTAAAA 58.294 29.630 0.00 0.00 0.00 1.52
3108 3706 8.987890 CATTTGGGGAGTTTTGTACATTAAAAG 58.012 33.333 0.00 0.00 0.00 2.27
3109 3707 7.663043 TTGGGGAGTTTTGTACATTAAAAGT 57.337 32.000 0.00 0.00 34.36 2.66
3110 3708 7.663043 TGGGGAGTTTTGTACATTAAAAGTT 57.337 32.000 0.00 0.00 32.45 2.66
3111 3709 7.718525 TGGGGAGTTTTGTACATTAAAAGTTC 58.281 34.615 0.00 0.00 32.45 3.01
3112 3710 7.342284 TGGGGAGTTTTGTACATTAAAAGTTCA 59.658 33.333 0.00 0.00 32.45 3.18
3113 3711 8.364894 GGGGAGTTTTGTACATTAAAAGTTCAT 58.635 33.333 0.00 0.00 32.45 2.57
3114 3712 9.191995 GGGAGTTTTGTACATTAAAAGTTCATG 57.808 33.333 0.00 0.00 32.45 3.07
3115 3713 9.959749 GGAGTTTTGTACATTAAAAGTTCATGA 57.040 29.630 0.00 0.00 32.45 3.07
3126 3724 9.831737 CATTAAAAGTTCATGAGAAGTTACAGG 57.168 33.333 0.00 0.00 44.54 4.00
3127 3725 6.884280 AAAAGTTCATGAGAAGTTACAGGG 57.116 37.500 0.00 0.00 44.54 4.45
3128 3726 4.559862 AGTTCATGAGAAGTTACAGGGG 57.440 45.455 0.00 0.00 33.66 4.79
3129 3727 3.264450 AGTTCATGAGAAGTTACAGGGGG 59.736 47.826 0.00 0.00 33.66 5.40
3145 3743 2.640316 GGGGGCTTCTAACATACAGG 57.360 55.000 0.00 0.00 0.00 4.00
3146 3744 1.143073 GGGGGCTTCTAACATACAGGG 59.857 57.143 0.00 0.00 0.00 4.45
3147 3745 1.143073 GGGGCTTCTAACATACAGGGG 59.857 57.143 0.00 0.00 0.00 4.79
3148 3746 2.124411 GGGCTTCTAACATACAGGGGA 58.876 52.381 0.00 0.00 0.00 4.81
3149 3747 2.508300 GGGCTTCTAACATACAGGGGAA 59.492 50.000 0.00 0.00 0.00 3.97
3150 3748 3.053917 GGGCTTCTAACATACAGGGGAAA 60.054 47.826 0.00 0.00 0.00 3.13
3151 3749 3.945921 GGCTTCTAACATACAGGGGAAAC 59.054 47.826 0.00 0.00 0.00 2.78
3152 3750 4.324331 GGCTTCTAACATACAGGGGAAACT 60.324 45.833 0.00 0.00 0.00 2.66
3153 3751 5.104652 GGCTTCTAACATACAGGGGAAACTA 60.105 44.000 0.00 0.00 0.00 2.24
3154 3752 6.409349 GGCTTCTAACATACAGGGGAAACTAT 60.409 42.308 0.00 0.00 0.00 2.12
3155 3753 6.483640 GCTTCTAACATACAGGGGAAACTATG 59.516 42.308 0.00 0.00 0.00 2.23
3156 3754 7.635089 GCTTCTAACATACAGGGGAAACTATGA 60.635 40.741 0.00 0.00 0.00 2.15
3157 3755 7.931015 TCTAACATACAGGGGAAACTATGAT 57.069 36.000 0.00 0.00 0.00 2.45
3158 3756 9.442062 TTCTAACATACAGGGGAAACTATGATA 57.558 33.333 0.00 0.00 0.00 2.15
3159 3757 9.442062 TCTAACATACAGGGGAAACTATGATAA 57.558 33.333 0.00 0.00 0.00 1.75
3183 3781 7.722949 AATATTTCAAGATTTCAGAAGGGCA 57.277 32.000 0.00 0.00 0.00 5.36
3184 3782 7.909485 ATATTTCAAGATTTCAGAAGGGCAT 57.091 32.000 0.00 0.00 0.00 4.40
3185 3783 9.425248 AATATTTCAAGATTTCAGAAGGGCATA 57.575 29.630 0.00 0.00 0.00 3.14
3186 3784 6.515272 TTTCAAGATTTCAGAAGGGCATAC 57.485 37.500 0.00 0.00 0.00 2.39
3187 3785 5.178096 TCAAGATTTCAGAAGGGCATACA 57.822 39.130 0.00 0.00 0.00 2.29
3188 3786 5.759059 TCAAGATTTCAGAAGGGCATACAT 58.241 37.500 0.00 0.00 0.00 2.29
3189 3787 6.189859 TCAAGATTTCAGAAGGGCATACATT 58.810 36.000 0.00 0.00 0.00 2.71
3190 3788 7.345691 TCAAGATTTCAGAAGGGCATACATTA 58.654 34.615 0.00 0.00 0.00 1.90
3191 3789 7.500227 TCAAGATTTCAGAAGGGCATACATTAG 59.500 37.037 0.00 0.00 0.00 1.73
3192 3790 6.904626 AGATTTCAGAAGGGCATACATTAGT 58.095 36.000 0.00 0.00 0.00 2.24
3193 3791 6.769822 AGATTTCAGAAGGGCATACATTAGTG 59.230 38.462 0.00 0.00 0.00 2.74
3194 3792 3.808728 TCAGAAGGGCATACATTAGTGC 58.191 45.455 0.00 0.00 40.55 4.40
3195 3793 3.199727 TCAGAAGGGCATACATTAGTGCA 59.800 43.478 0.00 0.00 43.00 4.57
3196 3794 4.139786 CAGAAGGGCATACATTAGTGCAT 58.860 43.478 0.00 0.00 43.00 3.96
3197 3795 4.581824 CAGAAGGGCATACATTAGTGCATT 59.418 41.667 0.00 0.00 43.00 3.56
3198 3796 5.068198 CAGAAGGGCATACATTAGTGCATTT 59.932 40.000 0.00 0.00 43.00 2.32
3199 3797 6.262944 CAGAAGGGCATACATTAGTGCATTTA 59.737 38.462 0.00 0.00 43.00 1.40
3200 3798 7.006509 AGAAGGGCATACATTAGTGCATTTAT 58.993 34.615 0.00 0.00 43.00 1.40
3201 3799 7.506938 AGAAGGGCATACATTAGTGCATTTATT 59.493 33.333 0.00 0.00 43.00 1.40
3202 3800 7.601705 AGGGCATACATTAGTGCATTTATTT 57.398 32.000 0.00 0.00 43.00 1.40
3203 3801 8.021898 AGGGCATACATTAGTGCATTTATTTT 57.978 30.769 0.00 0.00 43.00 1.82
3204 3802 8.143835 AGGGCATACATTAGTGCATTTATTTTC 58.856 33.333 0.00 0.00 43.00 2.29
3205 3803 8.143835 GGGCATACATTAGTGCATTTATTTTCT 58.856 33.333 0.00 0.00 43.00 2.52
3206 3804 9.533253 GGCATACATTAGTGCATTTATTTTCTT 57.467 29.630 0.00 0.00 43.00 2.52
3210 3808 8.761575 ACATTAGTGCATTTATTTTCTTGGTG 57.238 30.769 0.00 0.00 0.00 4.17
3211 3809 7.331687 ACATTAGTGCATTTATTTTCTTGGTGC 59.668 33.333 0.00 0.00 0.00 5.01
3212 3810 5.212532 AGTGCATTTATTTTCTTGGTGCA 57.787 34.783 0.00 0.00 38.62 4.57
3213 3811 5.797051 AGTGCATTTATTTTCTTGGTGCAT 58.203 33.333 0.00 0.00 42.23 3.96
3214 3812 6.232692 AGTGCATTTATTTTCTTGGTGCATT 58.767 32.000 0.00 0.00 42.23 3.56
3215 3813 6.711645 AGTGCATTTATTTTCTTGGTGCATTT 59.288 30.769 0.00 0.00 42.23 2.32
3216 3814 7.229106 AGTGCATTTATTTTCTTGGTGCATTTT 59.771 29.630 0.00 0.00 42.23 1.82
3217 3815 8.502387 GTGCATTTATTTTCTTGGTGCATTTTA 58.498 29.630 0.00 0.00 42.23 1.52
3218 3816 8.502387 TGCATTTATTTTCTTGGTGCATTTTAC 58.498 29.630 0.00 0.00 36.33 2.01
3219 3817 8.502387 GCATTTATTTTCTTGGTGCATTTTACA 58.498 29.630 0.00 0.00 0.00 2.41
3221 3819 7.650834 TTATTTTCTTGGTGCATTTTACAGC 57.349 32.000 0.00 0.00 36.09 4.40
3222 3820 4.662468 TTTCTTGGTGCATTTTACAGCA 57.338 36.364 0.00 0.00 43.29 4.41
3223 3821 4.870123 TTCTTGGTGCATTTTACAGCAT 57.130 36.364 0.00 0.00 44.27 3.79
3224 3822 4.870123 TCTTGGTGCATTTTACAGCATT 57.130 36.364 0.00 0.00 44.27 3.56
3225 3823 5.212532 TCTTGGTGCATTTTACAGCATTT 57.787 34.783 0.00 0.00 44.27 2.32
3226 3824 5.609423 TCTTGGTGCATTTTACAGCATTTT 58.391 33.333 0.00 0.00 44.27 1.82
3227 3825 6.753180 TCTTGGTGCATTTTACAGCATTTTA 58.247 32.000 0.00 0.00 44.27 1.52
3228 3826 6.867816 TCTTGGTGCATTTTACAGCATTTTAG 59.132 34.615 0.00 0.00 44.27 1.85
3229 3827 5.477510 TGGTGCATTTTACAGCATTTTAGG 58.522 37.500 0.00 0.00 43.44 2.69
3230 3828 5.244851 TGGTGCATTTTACAGCATTTTAGGA 59.755 36.000 0.00 0.00 43.44 2.94
3231 3829 5.807011 GGTGCATTTTACAGCATTTTAGGAG 59.193 40.000 0.00 0.00 43.44 3.69
3232 3830 5.807011 GTGCATTTTACAGCATTTTAGGAGG 59.193 40.000 0.00 0.00 43.44 4.30
3233 3831 5.480073 TGCATTTTACAGCATTTTAGGAGGT 59.520 36.000 0.00 0.00 35.51 3.85
3234 3832 6.014669 TGCATTTTACAGCATTTTAGGAGGTT 60.015 34.615 0.00 0.00 35.51 3.50
3235 3833 6.873605 GCATTTTACAGCATTTTAGGAGGTTT 59.126 34.615 0.00 0.00 0.00 3.27
3236 3834 7.387673 GCATTTTACAGCATTTTAGGAGGTTTT 59.612 33.333 0.00 0.00 0.00 2.43
3237 3835 8.711457 CATTTTACAGCATTTTAGGAGGTTTTG 58.289 33.333 0.00 0.00 0.00 2.44
3238 3836 7.589958 TTTACAGCATTTTAGGAGGTTTTGA 57.410 32.000 0.00 0.00 0.00 2.69
3239 3837 5.712152 ACAGCATTTTAGGAGGTTTTGAG 57.288 39.130 0.00 0.00 0.00 3.02
3240 3838 5.140454 ACAGCATTTTAGGAGGTTTTGAGT 58.860 37.500 0.00 0.00 0.00 3.41
3241 3839 5.598417 ACAGCATTTTAGGAGGTTTTGAGTT 59.402 36.000 0.00 0.00 0.00 3.01
3242 3840 6.775629 ACAGCATTTTAGGAGGTTTTGAGTTA 59.224 34.615 0.00 0.00 0.00 2.24
3243 3841 7.451566 ACAGCATTTTAGGAGGTTTTGAGTTAT 59.548 33.333 0.00 0.00 0.00 1.89
3244 3842 8.306761 CAGCATTTTAGGAGGTTTTGAGTTATT 58.693 33.333 0.00 0.00 0.00 1.40
3245 3843 8.523658 AGCATTTTAGGAGGTTTTGAGTTATTC 58.476 33.333 0.00 0.00 0.00 1.75
3246 3844 7.484959 GCATTTTAGGAGGTTTTGAGTTATTCG 59.515 37.037 0.00 0.00 0.00 3.34
3247 3845 6.490566 TTTAGGAGGTTTTGAGTTATTCGC 57.509 37.500 0.00 0.00 0.00 4.70
3248 3846 4.015872 AGGAGGTTTTGAGTTATTCGCA 57.984 40.909 0.00 0.00 0.00 5.10
3249 3847 4.394729 AGGAGGTTTTGAGTTATTCGCAA 58.605 39.130 0.00 0.00 34.29 4.85
3250 3848 5.010282 AGGAGGTTTTGAGTTATTCGCAAT 58.990 37.500 0.00 0.00 35.92 3.56
3251 3849 5.476945 AGGAGGTTTTGAGTTATTCGCAATT 59.523 36.000 0.00 0.00 35.92 2.32
3252 3850 6.015434 AGGAGGTTTTGAGTTATTCGCAATTT 60.015 34.615 0.00 0.00 35.92 1.82
3253 3851 6.308041 GGAGGTTTTGAGTTATTCGCAATTTC 59.692 38.462 0.00 0.00 35.92 2.17
3254 3852 6.744112 AGGTTTTGAGTTATTCGCAATTTCA 58.256 32.000 0.00 0.00 35.92 2.69
3255 3853 6.640907 AGGTTTTGAGTTATTCGCAATTTCAC 59.359 34.615 0.00 0.00 35.92 3.18
3256 3854 6.398517 GGTTTTGAGTTATTCGCAATTTCACG 60.399 38.462 0.00 0.00 35.92 4.35
3257 3855 5.599359 TTGAGTTATTCGCAATTTCACGA 57.401 34.783 0.00 0.00 36.32 4.35
3258 3856 5.794687 TGAGTTATTCGCAATTTCACGAT 57.205 34.783 0.00 0.00 38.25 3.73
3259 3857 6.176975 TGAGTTATTCGCAATTTCACGATT 57.823 33.333 0.00 0.00 38.25 3.34
3260 3858 7.297229 TGAGTTATTCGCAATTTCACGATTA 57.703 32.000 0.00 0.00 38.25 1.75
3261 3859 7.744059 TGAGTTATTCGCAATTTCACGATTAA 58.256 30.769 0.00 0.00 38.25 1.40
3262 3860 8.231161 TGAGTTATTCGCAATTTCACGATTAAA 58.769 29.630 0.00 0.00 36.49 1.52
3263 3861 8.376972 AGTTATTCGCAATTTCACGATTAAAC 57.623 30.769 0.00 8.01 36.49 2.01
3264 3862 8.018520 AGTTATTCGCAATTTCACGATTAAACA 58.981 29.630 0.00 0.00 36.49 2.83
3265 3863 8.631695 GTTATTCGCAATTTCACGATTAAACAA 58.368 29.630 0.00 0.00 36.49 2.83
3266 3864 7.630470 ATTCGCAATTTCACGATTAAACAAA 57.370 28.000 0.00 0.00 38.25 2.83
3267 3865 6.427300 TCGCAATTTCACGATTAAACAAAC 57.573 33.333 0.00 0.00 32.45 2.93
3268 3866 5.971792 TCGCAATTTCACGATTAAACAAACA 59.028 32.000 0.00 0.00 32.45 2.83
3269 3867 6.472486 TCGCAATTTCACGATTAAACAAACAA 59.528 30.769 0.00 0.00 32.45 2.83
3270 3868 7.168302 TCGCAATTTCACGATTAAACAAACAAT 59.832 29.630 0.00 0.00 32.45 2.71
3271 3869 8.420945 CGCAATTTCACGATTAAACAAACAATA 58.579 29.630 0.00 0.00 0.00 1.90
3279 3877 9.498307 CACGATTAAACAAACAATAATACTCCC 57.502 33.333 0.00 0.00 0.00 4.30
3280 3878 9.457436 ACGATTAAACAAACAATAATACTCCCT 57.543 29.630 0.00 0.00 0.00 4.20
3281 3879 9.931210 CGATTAAACAAACAATAATACTCCCTC 57.069 33.333 0.00 0.00 0.00 4.30
3283 3881 6.753107 AAACAAACAATAATACTCCCTCCG 57.247 37.500 0.00 0.00 0.00 4.63
3284 3882 5.431179 ACAAACAATAATACTCCCTCCGT 57.569 39.130 0.00 0.00 0.00 4.69
3285 3883 5.812286 ACAAACAATAATACTCCCTCCGTT 58.188 37.500 0.00 0.00 0.00 4.44
3286 3884 6.243148 ACAAACAATAATACTCCCTCCGTTT 58.757 36.000 0.00 0.00 0.00 3.60
3287 3885 6.373495 ACAAACAATAATACTCCCTCCGTTTC 59.627 38.462 0.00 0.00 0.00 2.78
3288 3886 5.952347 ACAATAATACTCCCTCCGTTTCT 57.048 39.130 0.00 0.00 0.00 2.52
3289 3887 5.671493 ACAATAATACTCCCTCCGTTTCTG 58.329 41.667 0.00 0.00 0.00 3.02
3290 3888 5.189145 ACAATAATACTCCCTCCGTTTCTGT 59.811 40.000 0.00 0.00 0.00 3.41
3291 3889 5.952347 ATAATACTCCCTCCGTTTCTGTT 57.048 39.130 0.00 0.00 0.00 3.16
3292 3890 4.635699 AATACTCCCTCCGTTTCTGTTT 57.364 40.909 0.00 0.00 0.00 2.83
3293 3891 5.750352 AATACTCCCTCCGTTTCTGTTTA 57.250 39.130 0.00 0.00 0.00 2.01
3294 3892 3.679824 ACTCCCTCCGTTTCTGTTTAG 57.320 47.619 0.00 0.00 0.00 1.85
3295 3893 2.970640 ACTCCCTCCGTTTCTGTTTAGT 59.029 45.455 0.00 0.00 0.00 2.24
3296 3894 3.006644 ACTCCCTCCGTTTCTGTTTAGTC 59.993 47.826 0.00 0.00 0.00 2.59
3297 3895 3.236896 TCCCTCCGTTTCTGTTTAGTCT 58.763 45.455 0.00 0.00 0.00 3.24
3298 3896 3.006537 TCCCTCCGTTTCTGTTTAGTCTG 59.993 47.826 0.00 0.00 0.00 3.51
3299 3897 2.737252 CCTCCGTTTCTGTTTAGTCTGC 59.263 50.000 0.00 0.00 0.00 4.26
3300 3898 3.390135 CTCCGTTTCTGTTTAGTCTGCA 58.610 45.455 0.00 0.00 0.00 4.41
3301 3899 3.997021 CTCCGTTTCTGTTTAGTCTGCAT 59.003 43.478 0.00 0.00 0.00 3.96
3302 3900 5.142061 TCCGTTTCTGTTTAGTCTGCATA 57.858 39.130 0.00 0.00 0.00 3.14
3303 3901 5.730550 TCCGTTTCTGTTTAGTCTGCATAT 58.269 37.500 0.00 0.00 0.00 1.78
3304 3902 6.869695 TCCGTTTCTGTTTAGTCTGCATATA 58.130 36.000 0.00 0.00 0.00 0.86
3305 3903 7.324935 TCCGTTTCTGTTTAGTCTGCATATAA 58.675 34.615 0.00 0.00 0.00 0.98
3306 3904 7.491372 TCCGTTTCTGTTTAGTCTGCATATAAG 59.509 37.037 0.00 0.00 0.00 1.73
3307 3905 7.491372 CCGTTTCTGTTTAGTCTGCATATAAGA 59.509 37.037 0.00 0.00 0.00 2.10
3308 3906 9.035607 CGTTTCTGTTTAGTCTGCATATAAGAT 57.964 33.333 0.00 0.00 0.00 2.40
3312 3910 9.330063 TCTGTTTAGTCTGCATATAAGATTTGG 57.670 33.333 0.00 0.00 0.00 3.28
3313 3911 9.113838 CTGTTTAGTCTGCATATAAGATTTGGT 57.886 33.333 0.00 0.00 0.00 3.67
3314 3912 9.109393 TGTTTAGTCTGCATATAAGATTTGGTC 57.891 33.333 0.00 0.00 0.00 4.02
3315 3913 9.109393 GTTTAGTCTGCATATAAGATTTGGTCA 57.891 33.333 0.00 0.00 0.00 4.02
3316 3914 8.893219 TTAGTCTGCATATAAGATTTGGTCAG 57.107 34.615 0.00 0.00 0.00 3.51
3317 3915 7.129457 AGTCTGCATATAAGATTTGGTCAGA 57.871 36.000 0.00 0.00 0.00 3.27
3318 3916 7.215789 AGTCTGCATATAAGATTTGGTCAGAG 58.784 38.462 0.00 0.00 0.00 3.35
3319 3917 6.989169 GTCTGCATATAAGATTTGGTCAGAGT 59.011 38.462 0.00 0.00 0.00 3.24
3320 3918 7.170658 GTCTGCATATAAGATTTGGTCAGAGTC 59.829 40.741 0.00 0.00 0.00 3.36
3321 3919 6.888105 TGCATATAAGATTTGGTCAGAGTCA 58.112 36.000 0.00 0.00 0.00 3.41
3322 3920 7.337938 TGCATATAAGATTTGGTCAGAGTCAA 58.662 34.615 0.00 0.00 0.00 3.18
3323 3921 7.828717 TGCATATAAGATTTGGTCAGAGTCAAA 59.171 33.333 0.00 2.40 37.29 2.69
3324 3922 8.844244 GCATATAAGATTTGGTCAGAGTCAAAT 58.156 33.333 10.05 10.05 43.64 2.32
3328 3926 9.918630 ATAAGATTTGGTCAGAGTCAAATTTTG 57.081 29.630 16.90 2.59 41.80 2.44
3329 3927 7.352079 AGATTTGGTCAGAGTCAAATTTTGT 57.648 32.000 8.89 0.00 41.80 2.83
3330 3928 8.463930 AGATTTGGTCAGAGTCAAATTTTGTA 57.536 30.769 8.89 0.00 41.80 2.41
3331 3929 8.571336 AGATTTGGTCAGAGTCAAATTTTGTAG 58.429 33.333 8.89 0.00 41.80 2.74
3332 3930 7.873719 TTTGGTCAGAGTCAAATTTTGTAGA 57.126 32.000 8.89 0.00 0.00 2.59
3333 3931 7.873719 TTGGTCAGAGTCAAATTTTGTAGAA 57.126 32.000 8.89 0.00 0.00 2.10
3334 3932 7.873719 TGGTCAGAGTCAAATTTTGTAGAAA 57.126 32.000 8.89 0.00 0.00 2.52
3335 3933 8.287439 TGGTCAGAGTCAAATTTTGTAGAAAA 57.713 30.769 8.89 0.00 35.52 2.29
3336 3934 8.744652 TGGTCAGAGTCAAATTTTGTAGAAAAA 58.255 29.630 8.89 0.00 34.72 1.94
3337 3935 9.750125 GGTCAGAGTCAAATTTTGTAGAAAAAT 57.250 29.630 8.89 0.00 34.72 1.82
3433 4031 9.857656 ATTTCATAGTGTGAATGTTCATATCCT 57.142 29.630 2.90 0.00 45.77 3.24
3434 4032 9.685276 TTTCATAGTGTGAATGTTCATATCCTT 57.315 29.630 2.90 0.00 45.77 3.36
3435 4033 9.685276 TTCATAGTGTGAATGTTCATATCCTTT 57.315 29.630 0.00 0.00 41.79 3.11
3436 4034 9.330063 TCATAGTGTGAATGTTCATATCCTTTC 57.670 33.333 0.00 0.00 39.73 2.62
3437 4035 8.562892 CATAGTGTGAATGTTCATATCCTTTCC 58.437 37.037 0.00 0.00 39.73 3.13
3438 4036 5.888161 AGTGTGAATGTTCATATCCTTTCCC 59.112 40.000 0.00 0.00 39.73 3.97
3439 4037 5.888161 GTGTGAATGTTCATATCCTTTCCCT 59.112 40.000 0.00 0.00 39.73 4.20
3440 4038 6.378280 GTGTGAATGTTCATATCCTTTCCCTT 59.622 38.462 0.00 0.00 39.73 3.95
3441 4039 6.953520 TGTGAATGTTCATATCCTTTCCCTTT 59.046 34.615 0.00 0.00 39.73 3.11
3442 4040 7.454380 TGTGAATGTTCATATCCTTTCCCTTTT 59.546 33.333 0.00 0.00 39.73 2.27
3443 4041 8.314021 GTGAATGTTCATATCCTTTCCCTTTTT 58.686 33.333 0.00 0.00 39.73 1.94
3460 4058 2.391926 TTTTGGAAAAGGGGGACTCC 57.608 50.000 0.00 0.00 0.00 3.85
3474 4072 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
3476 4074 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
3477 4075 4.559063 CCCGGCCTCTGCATCAGG 62.559 72.222 0.00 7.38 40.13 3.86
3478 4076 3.790437 CCGGCCTCTGCATCAGGT 61.790 66.667 12.36 0.00 40.13 4.00
3479 4077 2.513204 CGGCCTCTGCATCAGGTG 60.513 66.667 12.36 3.60 40.13 4.00
3480 4078 2.124403 GGCCTCTGCATCAGGTGG 60.124 66.667 12.36 1.24 40.13 4.61
3481 4079 2.673200 GGCCTCTGCATCAGGTGGA 61.673 63.158 12.36 0.00 40.13 4.02
3482 4080 1.530771 GCCTCTGCATCAGGTGGAT 59.469 57.895 12.36 0.00 37.47 3.41
3490 4088 1.516161 CATCAGGTGGATGCATACGG 58.484 55.000 4.01 0.00 46.35 4.02
3491 4089 0.250467 ATCAGGTGGATGCATACGGC 60.250 55.000 4.01 0.00 45.13 5.68
3492 4090 1.893808 CAGGTGGATGCATACGGCC 60.894 63.158 12.93 12.93 43.89 6.13
3493 4091 2.191908 GGTGGATGCATACGGCCA 59.808 61.111 15.22 8.81 43.89 5.36
3494 4092 3.420943 GTGGATGCATACGGCCAC 58.579 61.111 16.85 16.85 43.34 5.01
3495 4093 1.153168 GTGGATGCATACGGCCACT 60.153 57.895 22.03 0.00 45.58 4.00
3496 4094 0.748005 GTGGATGCATACGGCCACTT 60.748 55.000 22.03 0.00 45.58 3.16
3497 4095 0.833949 TGGATGCATACGGCCACTTA 59.166 50.000 4.01 0.00 43.89 2.24
3498 4096 1.202639 TGGATGCATACGGCCACTTAG 60.203 52.381 4.01 0.00 43.89 2.18
3499 4097 1.070134 GGATGCATACGGCCACTTAGA 59.930 52.381 2.24 0.00 43.89 2.10
3500 4098 2.289694 GGATGCATACGGCCACTTAGAT 60.290 50.000 2.24 0.00 43.89 1.98
3501 4099 3.056107 GGATGCATACGGCCACTTAGATA 60.056 47.826 2.24 0.00 43.89 1.98
3502 4100 4.562757 GGATGCATACGGCCACTTAGATAA 60.563 45.833 2.24 0.00 43.89 1.75
3503 4101 4.409718 TGCATACGGCCACTTAGATAAA 57.590 40.909 2.24 0.00 43.89 1.40
3504 4102 4.968259 TGCATACGGCCACTTAGATAAAT 58.032 39.130 2.24 0.00 43.89 1.40
3505 4103 6.104146 TGCATACGGCCACTTAGATAAATA 57.896 37.500 2.24 0.00 43.89 1.40
3506 4104 6.526526 TGCATACGGCCACTTAGATAAATAA 58.473 36.000 2.24 0.00 43.89 1.40
3507 4105 6.993308 TGCATACGGCCACTTAGATAAATAAA 59.007 34.615 2.24 0.00 43.89 1.40
3508 4106 7.499563 TGCATACGGCCACTTAGATAAATAAAA 59.500 33.333 2.24 0.00 43.89 1.52
3509 4107 8.512138 GCATACGGCCACTTAGATAAATAAAAT 58.488 33.333 2.24 0.00 36.11 1.82
3512 4110 8.617290 ACGGCCACTTAGATAAATAAAATAGG 57.383 34.615 2.24 0.00 0.00 2.57
3513 4111 8.215736 ACGGCCACTTAGATAAATAAAATAGGT 58.784 33.333 2.24 0.00 0.00 3.08
3514 4112 9.063615 CGGCCACTTAGATAAATAAAATAGGTT 57.936 33.333 2.24 0.00 0.00 3.50
3531 4129 8.561738 AAATAGGTTCAACAATGTCGAATAGT 57.438 30.769 0.00 0.00 0.00 2.12
3532 4130 7.772332 ATAGGTTCAACAATGTCGAATAGTC 57.228 36.000 0.00 0.00 0.00 2.59
3548 4146 5.722141 CGAATAGTCGTAAAAGAAAGCAACG 59.278 40.000 4.05 0.00 42.53 4.10
3549 4147 6.535274 AATAGTCGTAAAAGAAAGCAACGT 57.465 33.333 0.00 0.00 35.21 3.99
3550 4148 4.448363 AGTCGTAAAAGAAAGCAACGTC 57.552 40.909 0.00 0.00 35.21 4.34
3551 4149 3.060740 AGTCGTAAAAGAAAGCAACGTCG 60.061 43.478 0.00 0.00 35.21 5.12
3552 4150 3.061006 GTCGTAAAAGAAAGCAACGTCGA 60.061 43.478 0.00 0.00 35.21 4.20
3553 4151 3.180980 TCGTAAAAGAAAGCAACGTCGAG 59.819 43.478 0.00 0.00 35.21 4.04
3554 4152 2.384899 AAAAGAAAGCAACGTCGAGC 57.615 45.000 0.00 2.43 0.00 5.03
3555 4153 1.583054 AAAGAAAGCAACGTCGAGCT 58.417 45.000 10.35 10.35 44.31 4.09
3556 4154 1.140816 AAGAAAGCAACGTCGAGCTC 58.859 50.000 15.14 2.73 40.90 4.09
3557 4155 0.032130 AGAAAGCAACGTCGAGCTCA 59.968 50.000 15.40 0.00 40.90 4.26
3558 4156 0.161870 GAAAGCAACGTCGAGCTCAC 59.838 55.000 15.40 10.09 40.90 3.51
3559 4157 0.529773 AAAGCAACGTCGAGCTCACA 60.530 50.000 15.40 0.00 40.90 3.58
3560 4158 0.319900 AAGCAACGTCGAGCTCACAT 60.320 50.000 15.40 0.00 40.90 3.21
3561 4159 0.526211 AGCAACGTCGAGCTCACATA 59.474 50.000 15.40 0.00 36.00 2.29
3562 4160 0.917259 GCAACGTCGAGCTCACATAG 59.083 55.000 15.40 2.41 0.00 2.23
3563 4161 1.467543 GCAACGTCGAGCTCACATAGA 60.468 52.381 15.40 0.00 0.00 1.98
3564 4162 2.177977 CAACGTCGAGCTCACATAGAC 58.822 52.381 15.40 11.24 0.00 2.59
3565 4163 0.733729 ACGTCGAGCTCACATAGACC 59.266 55.000 15.40 0.00 0.00 3.85
3566 4164 1.018148 CGTCGAGCTCACATAGACCT 58.982 55.000 15.40 0.00 0.00 3.85
3567 4165 1.003331 CGTCGAGCTCACATAGACCTC 60.003 57.143 15.40 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.725203 TACGCCGCCTAATGATGCCC 62.725 60.000 0.00 0.00 0.00 5.36
48 49 2.836360 CATGTGGGATGGGCCTGC 60.836 66.667 4.53 0.00 36.66 4.85
79 80 1.683418 TTGCAATGCAGCCACACCAA 61.683 50.000 8.31 0.00 40.61 3.67
130 131 1.153086 GCCACATGCAGGGTAGAGG 60.153 63.158 2.31 0.00 40.77 3.69
166 186 3.779850 CTCGGCATGGACCATGGGG 62.780 68.421 31.08 15.10 41.64 4.96
167 187 2.203252 CTCGGCATGGACCATGGG 60.203 66.667 31.08 11.56 41.64 4.00
168 188 2.903855 GCTCGGCATGGACCATGG 60.904 66.667 31.08 18.11 41.64 3.66
169 189 2.903855 GGCTCGGCATGGACCATG 60.904 66.667 27.39 27.39 43.91 3.66
170 190 4.552365 CGGCTCGGCATGGACCAT 62.552 66.667 0.00 0.00 0.00 3.55
197 217 1.057636 CAGCGTGAATGCTTTGCTTG 58.942 50.000 0.00 0.00 44.46 4.01
336 372 0.880441 GGGTACGTAGCTAGCTAGGC 59.120 60.000 33.62 22.41 37.78 3.93
343 379 2.756760 CAGTCTTTGGGGTACGTAGCTA 59.243 50.000 22.84 10.81 0.00 3.32
399 435 0.590732 CGACCGTGCGTAGTACATCC 60.591 60.000 0.38 0.00 45.55 3.51
500 540 9.082313 ACATGATCAACAGTCTCCTTTTATTTT 57.918 29.630 0.00 0.00 0.00 1.82
631 671 3.874400 TCGGAGATAAGATCGTTCGTC 57.126 47.619 0.00 0.00 0.00 4.20
762 806 4.982295 AGCCAAACGAAATTAAGCTTTGAC 59.018 37.500 3.20 0.00 0.00 3.18
763 807 5.195001 AGCCAAACGAAATTAAGCTTTGA 57.805 34.783 3.20 0.00 0.00 2.69
765 809 6.761242 AGAAAAGCCAAACGAAATTAAGCTTT 59.239 30.769 3.20 0.00 44.57 3.51
767 811 5.842907 AGAAAAGCCAAACGAAATTAAGCT 58.157 33.333 0.00 0.00 31.70 3.74
818 902 1.000896 AAATGGGGAGGTTGGAGCG 60.001 57.895 0.00 0.00 0.00 5.03
821 905 0.618458 CGAGAAATGGGGAGGTTGGA 59.382 55.000 0.00 0.00 0.00 3.53
927 1278 2.839486 ACTGCTGTACTGCTTGCTTA 57.161 45.000 23.07 3.53 0.00 3.09
928 1279 2.693069 CTACTGCTGTACTGCTTGCTT 58.307 47.619 23.07 7.56 0.00 3.91
929 1280 1.674221 GCTACTGCTGTACTGCTTGCT 60.674 52.381 23.07 7.53 36.03 3.91
930 1281 0.723981 GCTACTGCTGTACTGCTTGC 59.276 55.000 23.07 17.06 36.03 4.01
938 1289 0.613260 CTTGTGGGGCTACTGCTGTA 59.387 55.000 3.25 3.25 39.59 2.74
959 1310 3.086600 ACAGGGCAGCTAGAGGGC 61.087 66.667 0.00 0.00 0.00 5.19
1286 1637 1.406069 CCGACCAGATCCACCTGAAAG 60.406 57.143 0.00 0.00 36.29 2.62
1838 2324 1.190763 GTCATGTACGACGCGTTGTTT 59.809 47.619 35.08 18.52 41.54 2.83
2640 3238 4.100084 TCTGCCATGGTGCTCCCG 62.100 66.667 14.67 0.00 35.15 5.14
2647 3245 0.322277 CTTCTGCTGTCTGCCATGGT 60.322 55.000 14.67 0.00 42.00 3.55
2691 3289 0.179468 AATACAATACGGGCGCAGGT 59.821 50.000 10.83 8.99 0.00 4.00
2762 3360 0.610174 CACCTAGCAGTTCAGGCAGA 59.390 55.000 0.00 0.00 35.14 4.26
2765 3363 3.896479 GCACCTAGCAGTTCAGGC 58.104 61.111 0.00 0.00 44.79 4.85
2829 3427 9.651913 GGACTTAAAATAATTTCATCAAGCCAA 57.348 29.630 0.00 0.00 0.00 4.52
2830 3428 8.811017 TGGACTTAAAATAATTTCATCAAGCCA 58.189 29.630 0.00 0.00 0.00 4.75
2831 3429 9.651913 TTGGACTTAAAATAATTTCATCAAGCC 57.348 29.630 0.00 0.00 0.00 4.35
2893 3491 9.586435 CCCCAATTTAAATCAAAGATGAGTTAC 57.414 33.333 0.10 0.00 43.52 2.50
2894 3492 9.320295 ACCCCAATTTAAATCAAAGATGAGTTA 57.680 29.630 0.10 0.00 41.70 2.24
2895 3493 8.206126 ACCCCAATTTAAATCAAAGATGAGTT 57.794 30.769 0.10 0.00 45.14 3.01
2896 3494 7.797121 ACCCCAATTTAAATCAAAGATGAGT 57.203 32.000 0.10 0.00 39.39 3.41
2911 3509 9.150028 ACATACTTGTAGTTTAAACCCCAATTT 57.850 29.630 14.72 9.73 33.16 1.82
2912 3510 8.715190 ACATACTTGTAGTTTAAACCCCAATT 57.285 30.769 14.72 13.13 33.16 2.32
2913 3511 8.715190 AACATACTTGTAGTTTAAACCCCAAT 57.285 30.769 14.72 9.84 34.06 3.16
2914 3512 9.810870 ATAACATACTTGTAGTTTAAACCCCAA 57.189 29.630 14.72 15.19 34.06 4.12
2915 3513 9.810870 AATAACATACTTGTAGTTTAAACCCCA 57.189 29.630 14.72 8.84 34.06 4.96
2955 3553 9.723601 AGGAAGCTGCAATAAAATTTTCATTAA 57.276 25.926 6.72 0.00 0.00 1.40
2957 3555 9.723601 TTAGGAAGCTGCAATAAAATTTTCATT 57.276 25.926 6.72 3.67 0.00 2.57
2958 3556 9.895138 ATTAGGAAGCTGCAATAAAATTTTCAT 57.105 25.926 6.72 0.00 0.00 2.57
2967 3565 9.806448 TCCAATAATATTAGGAAGCTGCAATAA 57.194 29.630 1.02 0.00 0.00 1.40
2968 3566 9.806448 TTCCAATAATATTAGGAAGCTGCAATA 57.194 29.630 10.65 0.00 35.35 1.90
2969 3567 8.710749 TTCCAATAATATTAGGAAGCTGCAAT 57.289 30.769 10.65 0.00 35.35 3.56
2970 3568 8.579006 CATTCCAATAATATTAGGAAGCTGCAA 58.421 33.333 16.87 0.00 42.84 4.08
2971 3569 7.309377 GCATTCCAATAATATTAGGAAGCTGCA 60.309 37.037 22.42 5.66 41.94 4.41
2972 3570 7.031975 GCATTCCAATAATATTAGGAAGCTGC 58.968 38.462 17.59 17.59 42.84 5.25
2973 3571 8.345724 AGCATTCCAATAATATTAGGAAGCTG 57.654 34.615 22.51 16.97 42.84 4.24
2974 3572 9.678260 CTAGCATTCCAATAATATTAGGAAGCT 57.322 33.333 24.24 24.24 42.84 3.74
2975 3573 9.454859 ACTAGCATTCCAATAATATTAGGAAGC 57.545 33.333 16.87 17.61 42.84 3.86
2988 3586 8.844244 GTGAAATATCTTGACTAGCATTCCAAT 58.156 33.333 0.00 0.00 0.00 3.16
2989 3587 7.828717 TGTGAAATATCTTGACTAGCATTCCAA 59.171 33.333 0.00 0.00 0.00 3.53
2990 3588 7.337938 TGTGAAATATCTTGACTAGCATTCCA 58.662 34.615 0.00 0.00 0.00 3.53
2991 3589 7.792374 TGTGAAATATCTTGACTAGCATTCC 57.208 36.000 0.00 0.00 0.00 3.01
2992 3590 7.848051 CGTTGTGAAATATCTTGACTAGCATTC 59.152 37.037 0.00 0.00 0.00 2.67
2993 3591 7.549134 TCGTTGTGAAATATCTTGACTAGCATT 59.451 33.333 0.00 0.00 0.00 3.56
2994 3592 7.041721 TCGTTGTGAAATATCTTGACTAGCAT 58.958 34.615 0.00 0.00 0.00 3.79
2995 3593 6.394809 TCGTTGTGAAATATCTTGACTAGCA 58.605 36.000 0.00 0.00 0.00 3.49
2996 3594 6.752351 TCTCGTTGTGAAATATCTTGACTAGC 59.248 38.462 0.00 0.00 0.00 3.42
2997 3595 8.689251 TTCTCGTTGTGAAATATCTTGACTAG 57.311 34.615 0.00 0.00 0.00 2.57
2998 3596 9.653287 ATTTCTCGTTGTGAAATATCTTGACTA 57.347 29.630 5.35 0.00 40.88 2.59
2999 3597 7.962964 TTTCTCGTTGTGAAATATCTTGACT 57.037 32.000 0.00 0.00 0.00 3.41
3000 3598 9.267096 GAATTTCTCGTTGTGAAATATCTTGAC 57.733 33.333 7.12 0.00 41.54 3.18
3001 3599 9.219603 AGAATTTCTCGTTGTGAAATATCTTGA 57.780 29.630 7.12 0.00 41.54 3.02
3002 3600 9.483062 GAGAATTTCTCGTTGTGAAATATCTTG 57.517 33.333 10.52 0.00 41.54 3.02
3062 3660 9.695526 CCAAATGATTTTCAACTCTCAATAACA 57.304 29.630 0.00 0.00 0.00 2.41
3063 3661 9.143631 CCCAAATGATTTTCAACTCTCAATAAC 57.856 33.333 0.00 0.00 0.00 1.89
3064 3662 8.313292 CCCCAAATGATTTTCAACTCTCAATAA 58.687 33.333 0.00 0.00 0.00 1.40
3065 3663 7.673504 TCCCCAAATGATTTTCAACTCTCAATA 59.326 33.333 0.00 0.00 0.00 1.90
3066 3664 6.497954 TCCCCAAATGATTTTCAACTCTCAAT 59.502 34.615 0.00 0.00 0.00 2.57
3067 3665 5.837979 TCCCCAAATGATTTTCAACTCTCAA 59.162 36.000 0.00 0.00 0.00 3.02
3068 3666 5.392995 TCCCCAAATGATTTTCAACTCTCA 58.607 37.500 0.00 0.00 0.00 3.27
3069 3667 5.478332 ACTCCCCAAATGATTTTCAACTCTC 59.522 40.000 0.00 0.00 0.00 3.20
3070 3668 5.397360 ACTCCCCAAATGATTTTCAACTCT 58.603 37.500 0.00 0.00 0.00 3.24
3071 3669 5.728637 ACTCCCCAAATGATTTTCAACTC 57.271 39.130 0.00 0.00 0.00 3.01
3072 3670 6.499106 AAACTCCCCAAATGATTTTCAACT 57.501 33.333 0.00 0.00 0.00 3.16
3073 3671 6.542005 ACAAAACTCCCCAAATGATTTTCAAC 59.458 34.615 0.00 0.00 0.00 3.18
3074 3672 6.657875 ACAAAACTCCCCAAATGATTTTCAA 58.342 32.000 0.00 0.00 0.00 2.69
3075 3673 6.245890 ACAAAACTCCCCAAATGATTTTCA 57.754 33.333 0.00 0.00 0.00 2.69
3076 3674 7.213678 TGTACAAAACTCCCCAAATGATTTTC 58.786 34.615 0.00 0.00 0.00 2.29
3077 3675 7.130681 TGTACAAAACTCCCCAAATGATTTT 57.869 32.000 0.00 0.00 0.00 1.82
3078 3676 6.739331 TGTACAAAACTCCCCAAATGATTT 57.261 33.333 0.00 0.00 0.00 2.17
3079 3677 6.933514 ATGTACAAAACTCCCCAAATGATT 57.066 33.333 0.00 0.00 0.00 2.57
3080 3678 6.933514 AATGTACAAAACTCCCCAAATGAT 57.066 33.333 0.00 0.00 0.00 2.45
3081 3679 7.841282 TTAATGTACAAAACTCCCCAAATGA 57.159 32.000 0.00 0.00 0.00 2.57
3082 3680 8.894768 TTTTAATGTACAAAACTCCCCAAATG 57.105 30.769 0.00 0.00 0.00 2.32
3083 3681 8.710239 ACTTTTAATGTACAAAACTCCCCAAAT 58.290 29.630 0.00 0.00 0.00 2.32
3084 3682 8.080363 ACTTTTAATGTACAAAACTCCCCAAA 57.920 30.769 0.00 0.00 0.00 3.28
3085 3683 7.663043 ACTTTTAATGTACAAAACTCCCCAA 57.337 32.000 0.00 0.00 0.00 4.12
3086 3684 7.342284 TGAACTTTTAATGTACAAAACTCCCCA 59.658 33.333 0.00 0.00 0.00 4.96
3087 3685 7.718525 TGAACTTTTAATGTACAAAACTCCCC 58.281 34.615 0.00 0.00 0.00 4.81
3088 3686 9.191995 CATGAACTTTTAATGTACAAAACTCCC 57.808 33.333 0.00 0.00 0.00 4.30
3089 3687 9.959749 TCATGAACTTTTAATGTACAAAACTCC 57.040 29.630 0.00 0.00 0.00 3.85
3100 3698 9.831737 CCTGTAACTTCTCATGAACTTTTAATG 57.168 33.333 0.00 0.00 0.00 1.90
3101 3699 9.014297 CCCTGTAACTTCTCATGAACTTTTAAT 57.986 33.333 0.00 0.00 0.00 1.40
3102 3700 7.447238 CCCCTGTAACTTCTCATGAACTTTTAA 59.553 37.037 0.00 0.00 0.00 1.52
3103 3701 6.940298 CCCCTGTAACTTCTCATGAACTTTTA 59.060 38.462 0.00 0.00 0.00 1.52
3104 3702 5.770162 CCCCTGTAACTTCTCATGAACTTTT 59.230 40.000 0.00 0.00 0.00 2.27
3105 3703 5.316987 CCCCTGTAACTTCTCATGAACTTT 58.683 41.667 0.00 0.00 0.00 2.66
3106 3704 4.263506 CCCCCTGTAACTTCTCATGAACTT 60.264 45.833 0.00 0.00 0.00 2.66
3107 3705 3.264450 CCCCCTGTAACTTCTCATGAACT 59.736 47.826 0.00 0.00 0.00 3.01
3108 3706 3.610911 CCCCCTGTAACTTCTCATGAAC 58.389 50.000 0.00 0.00 0.00 3.18
3126 3724 1.143073 CCCTGTATGTTAGAAGCCCCC 59.857 57.143 0.00 0.00 0.00 5.40
3127 3725 1.143073 CCCCTGTATGTTAGAAGCCCC 59.857 57.143 0.00 0.00 0.00 5.80
3128 3726 2.124411 TCCCCTGTATGTTAGAAGCCC 58.876 52.381 0.00 0.00 0.00 5.19
3129 3727 3.926058 TTCCCCTGTATGTTAGAAGCC 57.074 47.619 0.00 0.00 0.00 4.35
3130 3728 4.844884 AGTTTCCCCTGTATGTTAGAAGC 58.155 43.478 0.00 0.00 0.00 3.86
3131 3729 7.792032 TCATAGTTTCCCCTGTATGTTAGAAG 58.208 38.462 0.00 0.00 0.00 2.85
3132 3730 7.743116 TCATAGTTTCCCCTGTATGTTAGAA 57.257 36.000 0.00 0.00 0.00 2.10
3133 3731 7.931015 ATCATAGTTTCCCCTGTATGTTAGA 57.069 36.000 0.00 0.00 0.00 2.10
3157 3755 9.253832 TGCCCTTCTGAAATCTTGAAATATTTA 57.746 29.630 0.00 0.00 0.00 1.40
3158 3756 8.137745 TGCCCTTCTGAAATCTTGAAATATTT 57.862 30.769 0.00 0.00 0.00 1.40
3159 3757 7.722949 TGCCCTTCTGAAATCTTGAAATATT 57.277 32.000 0.00 0.00 0.00 1.28
3160 3758 7.909485 ATGCCCTTCTGAAATCTTGAAATAT 57.091 32.000 0.00 0.00 0.00 1.28
3161 3759 7.833682 TGTATGCCCTTCTGAAATCTTGAAATA 59.166 33.333 0.00 0.00 0.00 1.40
3162 3760 6.664816 TGTATGCCCTTCTGAAATCTTGAAAT 59.335 34.615 0.00 0.00 0.00 2.17
3163 3761 6.009589 TGTATGCCCTTCTGAAATCTTGAAA 58.990 36.000 0.00 0.00 0.00 2.69
3164 3762 5.569355 TGTATGCCCTTCTGAAATCTTGAA 58.431 37.500 0.00 0.00 0.00 2.69
3165 3763 5.178096 TGTATGCCCTTCTGAAATCTTGA 57.822 39.130 0.00 0.00 0.00 3.02
3166 3764 6.461110 AATGTATGCCCTTCTGAAATCTTG 57.539 37.500 0.00 0.00 0.00 3.02
3167 3765 7.284034 CACTAATGTATGCCCTTCTGAAATCTT 59.716 37.037 0.00 0.00 0.00 2.40
3168 3766 6.769822 CACTAATGTATGCCCTTCTGAAATCT 59.230 38.462 0.00 0.00 0.00 2.40
3169 3767 6.514048 GCACTAATGTATGCCCTTCTGAAATC 60.514 42.308 0.00 0.00 35.73 2.17
3170 3768 5.300286 GCACTAATGTATGCCCTTCTGAAAT 59.700 40.000 0.00 0.00 35.73 2.17
3171 3769 4.640201 GCACTAATGTATGCCCTTCTGAAA 59.360 41.667 0.00 0.00 35.73 2.69
3172 3770 4.199310 GCACTAATGTATGCCCTTCTGAA 58.801 43.478 0.00 0.00 35.73 3.02
3173 3771 3.199727 TGCACTAATGTATGCCCTTCTGA 59.800 43.478 0.00 0.00 41.33 3.27
3174 3772 3.544684 TGCACTAATGTATGCCCTTCTG 58.455 45.455 0.00 0.00 41.33 3.02
3175 3773 3.931907 TGCACTAATGTATGCCCTTCT 57.068 42.857 0.00 0.00 41.33 2.85
3176 3774 5.520376 AAATGCACTAATGTATGCCCTTC 57.480 39.130 0.00 0.00 41.33 3.46
3177 3775 7.601705 AATAAATGCACTAATGTATGCCCTT 57.398 32.000 0.00 0.00 41.33 3.95
3178 3776 7.601705 AAATAAATGCACTAATGTATGCCCT 57.398 32.000 0.00 0.00 41.33 5.19
3179 3777 8.143835 AGAAAATAAATGCACTAATGTATGCCC 58.856 33.333 0.00 0.00 41.33 5.36
3180 3778 9.533253 AAGAAAATAAATGCACTAATGTATGCC 57.467 29.630 0.00 0.00 41.33 4.40
3184 3782 9.853555 CACCAAGAAAATAAATGCACTAATGTA 57.146 29.630 0.00 0.00 0.00 2.29
3185 3783 7.331687 GCACCAAGAAAATAAATGCACTAATGT 59.668 33.333 0.00 0.00 0.00 2.71
3186 3784 7.331440 TGCACCAAGAAAATAAATGCACTAATG 59.669 33.333 0.00 0.00 36.72 1.90
3187 3785 7.385267 TGCACCAAGAAAATAAATGCACTAAT 58.615 30.769 0.00 0.00 36.72 1.73
3188 3786 6.753180 TGCACCAAGAAAATAAATGCACTAA 58.247 32.000 0.00 0.00 36.72 2.24
3189 3787 6.338214 TGCACCAAGAAAATAAATGCACTA 57.662 33.333 0.00 0.00 36.72 2.74
3190 3788 5.212532 TGCACCAAGAAAATAAATGCACT 57.787 34.783 0.00 0.00 36.72 4.40
3191 3789 6.484818 AATGCACCAAGAAAATAAATGCAC 57.515 33.333 0.00 0.00 43.71 4.57
3192 3790 7.507733 AAAATGCACCAAGAAAATAAATGCA 57.492 28.000 0.00 0.00 44.87 3.96
3193 3791 8.502387 TGTAAAATGCACCAAGAAAATAAATGC 58.498 29.630 0.00 0.00 0.00 3.56
3195 3793 8.720562 GCTGTAAAATGCACCAAGAAAATAAAT 58.279 29.630 0.00 0.00 0.00 1.40
3196 3794 7.712639 TGCTGTAAAATGCACCAAGAAAATAAA 59.287 29.630 0.00 0.00 33.94 1.40
3197 3795 7.212976 TGCTGTAAAATGCACCAAGAAAATAA 58.787 30.769 0.00 0.00 33.94 1.40
3198 3796 6.753180 TGCTGTAAAATGCACCAAGAAAATA 58.247 32.000 0.00 0.00 33.94 1.40
3199 3797 5.609423 TGCTGTAAAATGCACCAAGAAAAT 58.391 33.333 0.00 0.00 33.94 1.82
3200 3798 5.016051 TGCTGTAAAATGCACCAAGAAAA 57.984 34.783 0.00 0.00 33.94 2.29
3201 3799 4.662468 TGCTGTAAAATGCACCAAGAAA 57.338 36.364 0.00 0.00 33.94 2.52
3202 3800 4.870123 ATGCTGTAAAATGCACCAAGAA 57.130 36.364 0.00 0.00 42.26 2.52
3203 3801 4.870123 AATGCTGTAAAATGCACCAAGA 57.130 36.364 0.00 0.00 42.26 3.02
3204 3802 5.927954 AAAATGCTGTAAAATGCACCAAG 57.072 34.783 0.00 0.00 42.26 3.61
3205 3803 5.931146 CCTAAAATGCTGTAAAATGCACCAA 59.069 36.000 0.00 0.00 42.26 3.67
3206 3804 5.244851 TCCTAAAATGCTGTAAAATGCACCA 59.755 36.000 0.00 0.00 42.26 4.17
3207 3805 5.719173 TCCTAAAATGCTGTAAAATGCACC 58.281 37.500 0.00 0.00 42.26 5.01
3208 3806 5.807011 CCTCCTAAAATGCTGTAAAATGCAC 59.193 40.000 0.00 0.00 42.26 4.57
3209 3807 5.480073 ACCTCCTAAAATGCTGTAAAATGCA 59.520 36.000 0.00 0.00 43.67 3.96
3210 3808 5.965922 ACCTCCTAAAATGCTGTAAAATGC 58.034 37.500 0.00 0.00 0.00 3.56
3211 3809 8.711457 CAAAACCTCCTAAAATGCTGTAAAATG 58.289 33.333 0.00 0.00 0.00 2.32
3212 3810 8.646900 TCAAAACCTCCTAAAATGCTGTAAAAT 58.353 29.630 0.00 0.00 0.00 1.82
3213 3811 8.012957 TCAAAACCTCCTAAAATGCTGTAAAA 57.987 30.769 0.00 0.00 0.00 1.52
3214 3812 7.286775 ACTCAAAACCTCCTAAAATGCTGTAAA 59.713 33.333 0.00 0.00 0.00 2.01
3215 3813 6.775629 ACTCAAAACCTCCTAAAATGCTGTAA 59.224 34.615 0.00 0.00 0.00 2.41
3216 3814 6.303839 ACTCAAAACCTCCTAAAATGCTGTA 58.696 36.000 0.00 0.00 0.00 2.74
3217 3815 5.140454 ACTCAAAACCTCCTAAAATGCTGT 58.860 37.500 0.00 0.00 0.00 4.40
3218 3816 5.712152 ACTCAAAACCTCCTAAAATGCTG 57.288 39.130 0.00 0.00 0.00 4.41
3219 3817 8.422577 AATAACTCAAAACCTCCTAAAATGCT 57.577 30.769 0.00 0.00 0.00 3.79
3220 3818 7.484959 CGAATAACTCAAAACCTCCTAAAATGC 59.515 37.037 0.00 0.00 0.00 3.56
3221 3819 7.484959 GCGAATAACTCAAAACCTCCTAAAATG 59.515 37.037 0.00 0.00 0.00 2.32
3222 3820 7.175990 TGCGAATAACTCAAAACCTCCTAAAAT 59.824 33.333 0.00 0.00 0.00 1.82
3223 3821 6.487331 TGCGAATAACTCAAAACCTCCTAAAA 59.513 34.615 0.00 0.00 0.00 1.52
3224 3822 5.998981 TGCGAATAACTCAAAACCTCCTAAA 59.001 36.000 0.00 0.00 0.00 1.85
3225 3823 5.553123 TGCGAATAACTCAAAACCTCCTAA 58.447 37.500 0.00 0.00 0.00 2.69
3226 3824 5.155278 TGCGAATAACTCAAAACCTCCTA 57.845 39.130 0.00 0.00 0.00 2.94
3227 3825 4.015872 TGCGAATAACTCAAAACCTCCT 57.984 40.909 0.00 0.00 0.00 3.69
3228 3826 4.759516 TTGCGAATAACTCAAAACCTCC 57.240 40.909 0.00 0.00 0.00 4.30
3229 3827 6.861055 TGAAATTGCGAATAACTCAAAACCTC 59.139 34.615 0.00 0.00 0.00 3.85
3230 3828 6.640907 GTGAAATTGCGAATAACTCAAAACCT 59.359 34.615 0.00 0.00 0.00 3.50
3231 3829 6.398517 CGTGAAATTGCGAATAACTCAAAACC 60.399 38.462 0.00 0.00 0.00 3.27
3232 3830 6.358558 TCGTGAAATTGCGAATAACTCAAAAC 59.641 34.615 0.00 0.00 33.96 2.43
3233 3831 6.431278 TCGTGAAATTGCGAATAACTCAAAA 58.569 32.000 0.00 0.00 33.96 2.44
3234 3832 5.991568 TCGTGAAATTGCGAATAACTCAAA 58.008 33.333 0.00 0.00 33.96 2.69
3235 3833 5.599359 TCGTGAAATTGCGAATAACTCAA 57.401 34.783 0.00 0.00 33.96 3.02
3236 3834 5.794687 ATCGTGAAATTGCGAATAACTCA 57.205 34.783 4.55 0.00 40.61 3.41
3237 3835 8.513090 GTTTAATCGTGAAATTGCGAATAACTC 58.487 33.333 4.55 1.60 40.61 3.01
3238 3836 8.018520 TGTTTAATCGTGAAATTGCGAATAACT 58.981 29.630 4.55 0.00 40.61 2.24
3239 3837 8.152582 TGTTTAATCGTGAAATTGCGAATAAC 57.847 30.769 4.55 8.66 40.61 1.89
3240 3838 8.729529 TTGTTTAATCGTGAAATTGCGAATAA 57.270 26.923 4.55 4.63 40.61 1.40
3241 3839 8.631695 GTTTGTTTAATCGTGAAATTGCGAATA 58.368 29.630 4.55 0.00 40.61 1.75
3242 3840 7.168302 TGTTTGTTTAATCGTGAAATTGCGAAT 59.832 29.630 4.55 0.21 40.61 3.34
3243 3841 6.472486 TGTTTGTTTAATCGTGAAATTGCGAA 59.528 30.769 4.55 0.00 40.61 4.70
3244 3842 5.971792 TGTTTGTTTAATCGTGAAATTGCGA 59.028 32.000 0.00 3.18 41.50 5.10
3245 3843 6.191534 TGTTTGTTTAATCGTGAAATTGCG 57.808 33.333 0.00 0.00 0.00 4.85
3253 3851 9.498307 GGGAGTATTATTGTTTGTTTAATCGTG 57.502 33.333 0.00 0.00 0.00 4.35
3254 3852 9.457436 AGGGAGTATTATTGTTTGTTTAATCGT 57.543 29.630 0.00 0.00 0.00 3.73
3255 3853 9.931210 GAGGGAGTATTATTGTTTGTTTAATCG 57.069 33.333 0.00 0.00 0.00 3.34
3257 3855 8.899771 CGGAGGGAGTATTATTGTTTGTTTAAT 58.100 33.333 0.00 0.00 0.00 1.40
3258 3856 7.884354 ACGGAGGGAGTATTATTGTTTGTTTAA 59.116 33.333 0.00 0.00 0.00 1.52
3259 3857 7.396418 ACGGAGGGAGTATTATTGTTTGTTTA 58.604 34.615 0.00 0.00 0.00 2.01
3260 3858 6.243148 ACGGAGGGAGTATTATTGTTTGTTT 58.757 36.000 0.00 0.00 0.00 2.83
3261 3859 5.812286 ACGGAGGGAGTATTATTGTTTGTT 58.188 37.500 0.00 0.00 0.00 2.83
3262 3860 5.431179 ACGGAGGGAGTATTATTGTTTGT 57.569 39.130 0.00 0.00 0.00 2.83
3263 3861 6.598064 AGAAACGGAGGGAGTATTATTGTTTG 59.402 38.462 0.00 0.00 0.00 2.93
3264 3862 6.598064 CAGAAACGGAGGGAGTATTATTGTTT 59.402 38.462 0.00 0.00 0.00 2.83
3265 3863 6.113411 CAGAAACGGAGGGAGTATTATTGTT 58.887 40.000 0.00 0.00 0.00 2.83
3266 3864 5.189145 ACAGAAACGGAGGGAGTATTATTGT 59.811 40.000 0.00 0.00 0.00 2.71
3267 3865 5.671493 ACAGAAACGGAGGGAGTATTATTG 58.329 41.667 0.00 0.00 0.00 1.90
3268 3866 5.952347 ACAGAAACGGAGGGAGTATTATT 57.048 39.130 0.00 0.00 0.00 1.40
3269 3867 5.952347 AACAGAAACGGAGGGAGTATTAT 57.048 39.130 0.00 0.00 0.00 1.28
3270 3868 5.750352 AAACAGAAACGGAGGGAGTATTA 57.250 39.130 0.00 0.00 0.00 0.98
3271 3869 4.635699 AAACAGAAACGGAGGGAGTATT 57.364 40.909 0.00 0.00 0.00 1.89
3272 3870 4.776308 ACTAAACAGAAACGGAGGGAGTAT 59.224 41.667 0.00 0.00 0.00 2.12
3273 3871 4.154942 ACTAAACAGAAACGGAGGGAGTA 58.845 43.478 0.00 0.00 0.00 2.59
3274 3872 2.970640 ACTAAACAGAAACGGAGGGAGT 59.029 45.455 0.00 0.00 0.00 3.85
3275 3873 3.258622 AGACTAAACAGAAACGGAGGGAG 59.741 47.826 0.00 0.00 0.00 4.30
3276 3874 3.006537 CAGACTAAACAGAAACGGAGGGA 59.993 47.826 0.00 0.00 0.00 4.20
3277 3875 3.326747 CAGACTAAACAGAAACGGAGGG 58.673 50.000 0.00 0.00 0.00 4.30
3278 3876 2.737252 GCAGACTAAACAGAAACGGAGG 59.263 50.000 0.00 0.00 0.00 4.30
3279 3877 3.390135 TGCAGACTAAACAGAAACGGAG 58.610 45.455 0.00 0.00 0.00 4.63
3280 3878 3.462483 TGCAGACTAAACAGAAACGGA 57.538 42.857 0.00 0.00 0.00 4.69
3281 3879 7.491372 TCTTATATGCAGACTAAACAGAAACGG 59.509 37.037 0.00 0.00 0.00 4.44
3282 3880 8.407457 TCTTATATGCAGACTAAACAGAAACG 57.593 34.615 0.00 0.00 0.00 3.60
3286 3884 9.330063 CCAAATCTTATATGCAGACTAAACAGA 57.670 33.333 0.00 0.00 0.00 3.41
3287 3885 9.113838 ACCAAATCTTATATGCAGACTAAACAG 57.886 33.333 0.00 0.00 0.00 3.16
3288 3886 9.109393 GACCAAATCTTATATGCAGACTAAACA 57.891 33.333 0.00 0.00 0.00 2.83
3289 3887 9.109393 TGACCAAATCTTATATGCAGACTAAAC 57.891 33.333 0.00 0.00 0.00 2.01
3290 3888 9.330063 CTGACCAAATCTTATATGCAGACTAAA 57.670 33.333 0.00 0.00 0.00 1.85
3291 3889 8.704668 TCTGACCAAATCTTATATGCAGACTAA 58.295 33.333 0.00 0.00 0.00 2.24
3292 3890 8.250143 TCTGACCAAATCTTATATGCAGACTA 57.750 34.615 0.00 0.00 0.00 2.59
3293 3891 7.129457 TCTGACCAAATCTTATATGCAGACT 57.871 36.000 0.00 0.00 0.00 3.24
3294 3892 6.989169 ACTCTGACCAAATCTTATATGCAGAC 59.011 38.462 0.00 0.00 0.00 3.51
3295 3893 7.129457 ACTCTGACCAAATCTTATATGCAGA 57.871 36.000 0.00 0.00 0.00 4.26
3296 3894 6.988580 TGACTCTGACCAAATCTTATATGCAG 59.011 38.462 0.00 0.00 0.00 4.41
3297 3895 6.888105 TGACTCTGACCAAATCTTATATGCA 58.112 36.000 0.00 0.00 0.00 3.96
3298 3896 7.792374 TTGACTCTGACCAAATCTTATATGC 57.208 36.000 0.00 0.00 0.00 3.14
3302 3900 9.918630 CAAAATTTGACTCTGACCAAATCTTAT 57.081 29.630 0.00 0.00 40.78 1.73
3303 3901 8.912988 ACAAAATTTGACTCTGACCAAATCTTA 58.087 29.630 13.19 0.00 40.78 2.10
3304 3902 7.785033 ACAAAATTTGACTCTGACCAAATCTT 58.215 30.769 13.19 4.56 40.78 2.40
3305 3903 7.352079 ACAAAATTTGACTCTGACCAAATCT 57.648 32.000 13.19 0.00 40.78 2.40
3306 3904 8.567948 TCTACAAAATTTGACTCTGACCAAATC 58.432 33.333 13.19 0.00 40.78 2.17
3307 3905 8.463930 TCTACAAAATTTGACTCTGACCAAAT 57.536 30.769 13.19 7.19 42.72 2.32
3308 3906 7.873719 TCTACAAAATTTGACTCTGACCAAA 57.126 32.000 13.19 0.00 36.80 3.28
3309 3907 7.873719 TTCTACAAAATTTGACTCTGACCAA 57.126 32.000 13.19 0.00 0.00 3.67
3310 3908 7.873719 TTTCTACAAAATTTGACTCTGACCA 57.126 32.000 13.19 0.00 0.00 4.02
3311 3909 9.750125 ATTTTTCTACAAAATTTGACTCTGACC 57.250 29.630 13.19 0.00 31.39 4.02
3410 4008 9.330063 GAAAGGATATGAACATTCACACTATGA 57.670 33.333 0.00 0.00 40.49 2.15
3411 4009 8.562892 GGAAAGGATATGAACATTCACACTATG 58.437 37.037 0.00 0.00 40.49 2.23
3412 4010 7.721399 GGGAAAGGATATGAACATTCACACTAT 59.279 37.037 0.00 0.00 40.49 2.12
3413 4011 7.054124 GGGAAAGGATATGAACATTCACACTA 58.946 38.462 0.00 0.00 40.49 2.74
3414 4012 5.888161 GGGAAAGGATATGAACATTCACACT 59.112 40.000 0.00 0.00 40.49 3.55
3415 4013 5.888161 AGGGAAAGGATATGAACATTCACAC 59.112 40.000 0.00 0.00 40.49 3.82
3416 4014 6.078456 AGGGAAAGGATATGAACATTCACA 57.922 37.500 0.00 0.00 40.49 3.58
3417 4015 7.410120 AAAGGGAAAGGATATGAACATTCAC 57.590 36.000 0.00 0.00 40.49 3.18
3418 4016 8.434589 AAAAAGGGAAAGGATATGAACATTCA 57.565 30.769 0.00 0.00 42.14 2.57
3440 4038 2.684943 GGAGTCCCCCTTTTCCAAAAA 58.315 47.619 0.00 0.00 0.00 1.94
3441 4039 2.391926 GGAGTCCCCCTTTTCCAAAA 57.608 50.000 0.00 0.00 0.00 2.44
3457 4055 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
3459 4057 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3460 4058 4.559063 CCTGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
3461 4059 3.790437 ACCTGATGCAGAGGCCGG 61.790 66.667 13.39 0.00 40.13 6.13
3462 4060 2.513204 CACCTGATGCAGAGGCCG 60.513 66.667 13.39 3.02 40.13 6.13
3463 4061 1.992519 ATCCACCTGATGCAGAGGCC 61.993 60.000 13.39 0.00 40.13 5.19
3464 4062 0.818445 CATCCACCTGATGCAGAGGC 60.818 60.000 13.39 0.00 44.16 4.70
3465 4063 3.398694 CATCCACCTGATGCAGAGG 57.601 57.895 12.14 12.14 44.16 3.69
3472 4070 0.250467 GCCGTATGCATCCACCTGAT 60.250 55.000 0.19 0.00 40.77 2.90
3473 4071 1.146041 GCCGTATGCATCCACCTGA 59.854 57.895 0.19 0.00 40.77 3.86
3474 4072 1.893808 GGCCGTATGCATCCACCTG 60.894 63.158 0.19 0.00 43.89 4.00
3475 4073 2.374525 TGGCCGTATGCATCCACCT 61.375 57.895 0.19 0.00 43.89 4.00
3476 4074 2.186826 GTGGCCGTATGCATCCACC 61.187 63.158 19.75 11.28 42.25 4.61
3477 4075 0.748005 AAGTGGCCGTATGCATCCAC 60.748 55.000 21.88 21.88 46.93 4.02
3478 4076 0.833949 TAAGTGGCCGTATGCATCCA 59.166 50.000 0.19 0.56 43.89 3.41
3479 4077 1.070134 TCTAAGTGGCCGTATGCATCC 59.930 52.381 0.19 0.00 43.89 3.51
3480 4078 2.526304 TCTAAGTGGCCGTATGCATC 57.474 50.000 0.19 0.00 43.89 3.91
3481 4079 4.617253 TTATCTAAGTGGCCGTATGCAT 57.383 40.909 3.79 3.79 43.89 3.96
3482 4080 4.409718 TTTATCTAAGTGGCCGTATGCA 57.590 40.909 0.00 0.00 43.89 3.96
3483 4081 7.429636 TTTATTTATCTAAGTGGCCGTATGC 57.570 36.000 0.00 0.00 40.16 3.14
3486 4084 9.715121 CCTATTTTATTTATCTAAGTGGCCGTA 57.285 33.333 0.00 0.00 0.00 4.02
3487 4085 8.215736 ACCTATTTTATTTATCTAAGTGGCCGT 58.784 33.333 0.00 0.00 0.00 5.68
3488 4086 8.617290 ACCTATTTTATTTATCTAAGTGGCCG 57.383 34.615 0.00 0.00 0.00 6.13
3505 4103 9.010029 ACTATTCGACATTGTTGAACCTATTTT 57.990 29.630 19.37 6.78 38.55 1.82
3506 4104 8.561738 ACTATTCGACATTGTTGAACCTATTT 57.438 30.769 19.37 7.40 38.55 1.40
3507 4105 8.197988 GACTATTCGACATTGTTGAACCTATT 57.802 34.615 19.37 8.01 38.55 1.73
3508 4106 7.772332 GACTATTCGACATTGTTGAACCTAT 57.228 36.000 19.37 8.33 38.55 2.57
3525 4123 6.587651 ACGTTGCTTTCTTTTACGACTATTC 58.412 36.000 0.00 0.00 36.21 1.75
3526 4124 6.535274 ACGTTGCTTTCTTTTACGACTATT 57.465 33.333 0.00 0.00 36.21 1.73
3527 4125 5.164119 CGACGTTGCTTTCTTTTACGACTAT 60.164 40.000 0.00 0.00 36.21 2.12
3528 4126 4.146961 CGACGTTGCTTTCTTTTACGACTA 59.853 41.667 0.00 0.00 36.21 2.59
3529 4127 3.060740 CGACGTTGCTTTCTTTTACGACT 60.061 43.478 0.00 0.00 36.21 4.18
3530 4128 3.061006 TCGACGTTGCTTTCTTTTACGAC 60.061 43.478 0.00 0.00 36.21 4.34
3531 4129 3.114809 TCGACGTTGCTTTCTTTTACGA 58.885 40.909 0.00 0.00 36.21 3.43
3532 4130 3.457596 CTCGACGTTGCTTTCTTTTACG 58.542 45.455 0.00 0.00 38.14 3.18
3533 4131 3.059800 AGCTCGACGTTGCTTTCTTTTAC 60.060 43.478 11.12 0.00 35.86 2.01
3534 4132 3.128349 AGCTCGACGTTGCTTTCTTTTA 58.872 40.909 11.12 0.00 35.86 1.52
3535 4133 1.940613 AGCTCGACGTTGCTTTCTTTT 59.059 42.857 11.12 0.00 35.86 2.27
3536 4134 1.527311 GAGCTCGACGTTGCTTTCTTT 59.473 47.619 16.25 0.00 39.91 2.52
3537 4135 1.140816 GAGCTCGACGTTGCTTTCTT 58.859 50.000 16.25 0.00 39.91 2.52
3538 4136 0.032130 TGAGCTCGACGTTGCTTTCT 59.968 50.000 9.64 0.60 39.91 2.52
3539 4137 0.161870 GTGAGCTCGACGTTGCTTTC 59.838 55.000 9.64 10.43 39.91 2.62
3540 4138 0.529773 TGTGAGCTCGACGTTGCTTT 60.530 50.000 9.64 0.00 39.91 3.51
3541 4139 0.319900 ATGTGAGCTCGACGTTGCTT 60.320 50.000 9.64 1.98 39.91 3.91
3542 4140 0.526211 TATGTGAGCTCGACGTTGCT 59.474 50.000 9.64 15.41 42.82 3.91
3543 4141 0.917259 CTATGTGAGCTCGACGTTGC 59.083 55.000 9.64 7.33 0.00 4.17
3544 4142 2.177977 GTCTATGTGAGCTCGACGTTG 58.822 52.381 9.64 10.54 0.00 4.10
3545 4143 1.132643 GGTCTATGTGAGCTCGACGTT 59.867 52.381 9.64 3.58 39.86 3.99
3546 4144 0.733729 GGTCTATGTGAGCTCGACGT 59.266 55.000 9.64 11.91 39.86 4.34
3547 4145 3.535691 GGTCTATGTGAGCTCGACG 57.464 57.895 9.64 0.00 39.86 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.