Multiple sequence alignment - TraesCS7D01G313500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G313500 chr7D 100.000 5554 0 0 1 5554 397211262 397205709 0.000000e+00 10257.0
1 TraesCS7D01G313500 chr7D 82.036 334 48 8 4746 5068 191552547 191552215 1.970000e-69 274.0
2 TraesCS7D01G313500 chr7A 96.491 4788 131 14 790 5554 452646590 452651363 0.000000e+00 7877.0
3 TraesCS7D01G313500 chr7A 95.200 125 6 0 1 125 239089019 239089143 1.220000e-46 198.0
4 TraesCS7D01G313500 chr7A 90.789 76 2 3 5131 5205 36328899 36328970 4.580000e-16 97.1
5 TraesCS7D01G313500 chr7B 95.523 2390 82 13 3174 5552 400941195 400938820 0.000000e+00 3797.0
6 TraesCS7D01G313500 chr7B 99.190 1234 9 1 1894 3127 400942425 400941193 0.000000e+00 2222.0
7 TraesCS7D01G313500 chr7B 93.862 1287 38 13 589 1847 400943698 400942425 0.000000e+00 1901.0
8 TraesCS7D01G313500 chr7B 83.099 355 43 12 4701 5046 701154624 701154970 1.940000e-79 307.0
9 TraesCS7D01G313500 chr7B 81.707 164 25 5 5200 5360 436785367 436785528 1.260000e-26 132.0
10 TraesCS7D01G313500 chr2D 84.011 369 40 11 4709 5060 87248655 87249021 2.480000e-88 337.0
11 TraesCS7D01G313500 chr2D 83.056 360 46 13 4723 5067 197870926 197870567 4.180000e-81 313.0
12 TraesCS7D01G313500 chr2D 80.319 188 34 3 5203 5388 614841023 614840837 7.500000e-29 139.0
13 TraesCS7D01G313500 chr2D 81.818 154 25 3 5209 5360 89280743 89280591 5.840000e-25 126.0
14 TraesCS7D01G313500 chr2A 83.202 381 40 16 4708 5066 87446418 87446796 1.490000e-85 327.0
15 TraesCS7D01G313500 chr2A 78.713 202 30 4 5209 5410 320199289 320199477 7.560000e-24 122.0
16 TraesCS7D01G313500 chr2A 90.789 76 2 2 5134 5208 590934608 590934537 4.580000e-16 97.1
17 TraesCS7D01G313500 chr2A 90.667 75 2 4 5132 5205 574450758 574450828 1.650000e-15 95.3
18 TraesCS7D01G313500 chr3A 81.868 364 44 12 4709 5068 699981410 699981065 2.530000e-73 287.0
19 TraesCS7D01G313500 chr3A 80.124 161 27 5 5203 5360 713996319 713996161 1.260000e-21 115.0
20 TraesCS7D01G313500 chr4B 80.161 373 55 16 4708 5068 460190086 460190451 1.530000e-65 261.0
21 TraesCS7D01G313500 chr4B 89.024 82 3 4 5128 5208 498512075 498511999 4.580000e-16 97.1
22 TraesCS7D01G313500 chr4B 89.024 82 4 3 5125 5205 649753237 649753314 4.580000e-16 97.1
23 TraesCS7D01G313500 chr6A 95.902 122 5 0 1 122 161942286 161942407 1.220000e-46 198.0
24 TraesCS7D01G313500 chr6A 95.200 125 4 2 1 124 125349882 125350005 4.390000e-46 196.0
25 TraesCS7D01G313500 chr6A 82.014 139 20 3 5203 5339 469146302 469146167 4.550000e-21 113.0
26 TraesCS7D01G313500 chr6A 91.026 78 2 3 5132 5208 597049043 597048970 3.540000e-17 100.0
27 TraesCS7D01G313500 chr4D 95.161 124 6 0 1 124 405448238 405448361 4.390000e-46 196.0
28 TraesCS7D01G313500 chr4D 93.846 130 4 4 1 128 318474052 318474179 5.680000e-45 193.0
29 TraesCS7D01G313500 chr4D 81.818 165 23 7 5210 5371 213983299 213983139 1.260000e-26 132.0
30 TraesCS7D01G313500 chr6D 93.846 130 4 3 1 128 409876923 409876796 5.680000e-45 193.0
31 TraesCS7D01G313500 chr3D 93.182 132 8 1 1 131 512539829 512539698 5.680000e-45 193.0
32 TraesCS7D01G313500 chr3D 93.130 131 7 2 1 130 460345098 460344969 2.040000e-44 191.0
33 TraesCS7D01G313500 chr4A 93.130 131 5 4 1 131 369146177 369146303 7.340000e-44 189.0
34 TraesCS7D01G313500 chr4A 80.612 196 25 10 5199 5386 49202823 49203013 7.500000e-29 139.0
35 TraesCS7D01G313500 chr1B 89.873 79 2 4 5128 5205 226852760 226852833 4.580000e-16 97.1
36 TraesCS7D01G313500 chr1B 85.185 54 6 2 5357 5410 54976904 54976853 3.000000e-03 54.7
37 TraesCS7D01G313500 chr1B 85.185 54 6 2 5357 5410 55015434 55015383 3.000000e-03 54.7
38 TraesCS7D01G313500 chr5D 76.974 152 25 10 5209 5353 455823619 455823471 1.660000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G313500 chr7D 397205709 397211262 5553 True 10257 10257 100.000000 1 5554 1 chr7D.!!$R2 5553
1 TraesCS7D01G313500 chr7A 452646590 452651363 4773 False 7877 7877 96.491000 790 5554 1 chr7A.!!$F3 4764
2 TraesCS7D01G313500 chr7B 400938820 400943698 4878 True 2640 3797 96.191667 589 5552 3 chr7B.!!$R1 4963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.036164 CAACTGACGGTCCCATCCAA 59.964 55.000 5.55 0.00 0.00 3.53 F
291 292 0.174617 CAAAACCCTTGTGGCACGTT 59.825 50.000 13.77 7.95 37.83 3.99 F
1486 1515 0.107654 ACTTGGGTTAGGATGAGCGC 60.108 55.000 0.00 0.00 0.00 5.92 F
1549 1578 2.495669 TGATGCGGAACAGTCTGATGTA 59.504 45.455 6.91 0.00 31.70 2.29 F
1857 1886 4.681074 AAACCCCCATTGTGTGTTAAAG 57.319 40.909 0.00 0.00 0.00 1.85 F
1945 1974 6.164417 TCTACCTGTAAACAGTGCTAACAA 57.836 37.500 9.17 0.00 42.27 2.83 F
3155 3185 4.422840 CATCAATTTCTGCGTTAATGCCA 58.577 39.130 16.88 4.65 0.00 4.92 F
3312 3342 2.624674 AAACTGGTGCTGAAGGGCGT 62.625 55.000 0.00 0.00 34.52 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1267 1286 1.981495 AGGGGATATCAAGCAGGCTAC 59.019 52.381 4.83 0.0 0.00 3.58 R
1549 1578 2.497273 GGGCACTGCAAGGAAATTGTAT 59.503 45.455 2.82 0.0 41.29 2.29 R
2384 2413 1.300233 GATTCCCCTCGTAGCAGCG 60.300 63.158 0.00 0.0 0.00 5.18 R
3141 3171 2.092968 AGAGGAATGGCATTAACGCAGA 60.093 45.455 13.65 0.0 0.00 4.26 R
3151 3181 2.297033 GCACAAAGAAAGAGGAATGGCA 59.703 45.455 0.00 0.0 0.00 4.92 R
3312 3342 3.210227 TGTTTTCGCCTCATCAAGAACA 58.790 40.909 0.00 0.0 0.00 3.18 R
4418 4448 0.829333 ACTCGAGCTGATGCCTCAAT 59.171 50.000 13.61 0.0 40.80 2.57 R
4732 4763 1.549243 TTGGCACGGAGGAGCATGTA 61.549 55.000 0.00 0.0 34.39 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.733556 ACATGTATCAAGTTTCTGGTTAATACA 57.266 29.630 0.00 0.00 34.10 2.29
99 100 8.626526 AATAACAACTTTATTATTGCCCGTAGG 58.373 33.333 0.00 0.00 37.21 3.18
115 116 4.073293 CGTAGGGCATATTTCCTTCACT 57.927 45.455 0.00 0.00 34.75 3.41
116 117 3.809832 CGTAGGGCATATTTCCTTCACTG 59.190 47.826 0.00 0.00 34.75 3.66
117 118 2.659428 AGGGCATATTTCCTTCACTGC 58.341 47.619 0.00 0.00 0.00 4.40
118 119 2.025037 AGGGCATATTTCCTTCACTGCA 60.025 45.455 0.00 0.00 0.00 4.41
119 120 2.961062 GGGCATATTTCCTTCACTGCAT 59.039 45.455 0.00 0.00 0.00 3.96
120 121 3.243636 GGGCATATTTCCTTCACTGCATG 60.244 47.826 0.00 0.00 0.00 4.06
121 122 3.378339 GCATATTTCCTTCACTGCATGC 58.622 45.455 11.82 11.82 0.00 4.06
122 123 3.181484 GCATATTTCCTTCACTGCATGCA 60.181 43.478 21.29 21.29 37.92 3.96
123 124 4.500887 GCATATTTCCTTCACTGCATGCAT 60.501 41.667 22.97 8.85 37.92 3.96
124 125 3.795623 ATTTCCTTCACTGCATGCATC 57.204 42.857 22.97 0.00 0.00 3.91
125 126 1.089112 TTCCTTCACTGCATGCATCG 58.911 50.000 22.97 15.30 0.00 3.84
126 127 0.745486 TCCTTCACTGCATGCATCGG 60.745 55.000 22.97 16.19 0.00 4.18
127 128 0.745486 CCTTCACTGCATGCATCGGA 60.745 55.000 22.97 15.78 0.00 4.55
128 129 0.376152 CTTCACTGCATGCATCGGAC 59.624 55.000 22.97 0.00 0.00 4.79
129 130 0.321475 TTCACTGCATGCATCGGACA 60.321 50.000 22.97 7.34 0.00 4.02
130 131 0.321475 TCACTGCATGCATCGGACAA 60.321 50.000 22.97 0.00 0.00 3.18
131 132 0.522626 CACTGCATGCATCGGACAAA 59.477 50.000 22.97 0.00 0.00 2.83
132 133 1.133598 CACTGCATGCATCGGACAAAT 59.866 47.619 22.97 0.00 0.00 2.32
133 134 1.402968 ACTGCATGCATCGGACAAATC 59.597 47.619 22.97 0.00 0.00 2.17
134 135 1.402613 CTGCATGCATCGGACAAATCA 59.597 47.619 22.97 0.00 0.00 2.57
135 136 1.817447 TGCATGCATCGGACAAATCAA 59.183 42.857 18.46 0.00 0.00 2.57
136 137 2.159352 TGCATGCATCGGACAAATCAAG 60.159 45.455 18.46 0.00 0.00 3.02
137 138 2.797087 GCATGCATCGGACAAATCAAGG 60.797 50.000 14.21 0.00 0.00 3.61
138 139 0.810648 TGCATCGGACAAATCAAGGC 59.189 50.000 0.00 0.00 0.00 4.35
139 140 0.810648 GCATCGGACAAATCAAGGCA 59.189 50.000 0.00 0.00 0.00 4.75
140 141 1.202222 GCATCGGACAAATCAAGGCAG 60.202 52.381 0.00 0.00 0.00 4.85
141 142 1.402968 CATCGGACAAATCAAGGCAGG 59.597 52.381 0.00 0.00 0.00 4.85
142 143 0.322456 TCGGACAAATCAAGGCAGGG 60.322 55.000 0.00 0.00 0.00 4.45
143 144 0.322456 CGGACAAATCAAGGCAGGGA 60.322 55.000 0.00 0.00 0.00 4.20
144 145 1.683011 CGGACAAATCAAGGCAGGGAT 60.683 52.381 0.00 0.00 0.00 3.85
145 146 1.753073 GGACAAATCAAGGCAGGGATG 59.247 52.381 0.00 0.00 0.00 3.51
146 147 1.753073 GACAAATCAAGGCAGGGATGG 59.247 52.381 0.00 0.00 0.00 3.51
147 148 0.462789 CAAATCAAGGCAGGGATGGC 59.537 55.000 0.00 0.00 0.00 4.40
158 159 4.759205 GGATGGCCGCCAACCCTT 62.759 66.667 24.93 4.70 40.09 3.95
159 160 3.451894 GATGGCCGCCAACCCTTG 61.452 66.667 18.00 0.00 36.95 3.61
167 168 2.763215 CCAACCCTTGCCCTGCTA 59.237 61.111 0.00 0.00 0.00 3.49
168 169 1.379044 CCAACCCTTGCCCTGCTAG 60.379 63.158 0.00 0.00 0.00 3.42
170 171 1.852626 AACCCTTGCCCTGCTAGGT 60.853 57.895 13.99 3.28 46.95 3.08
171 172 1.853250 AACCCTTGCCCTGCTAGGTC 61.853 60.000 13.99 0.00 46.95 3.85
172 173 2.592308 CCTTGCCCTGCTAGGTCC 59.408 66.667 8.18 0.00 44.24 4.46
173 174 1.997874 CCTTGCCCTGCTAGGTCCT 60.998 63.158 8.18 0.00 44.24 3.85
174 175 1.524482 CTTGCCCTGCTAGGTCCTC 59.476 63.158 0.00 0.00 31.93 3.71
175 176 1.977293 CTTGCCCTGCTAGGTCCTCC 61.977 65.000 0.00 0.00 31.93 4.30
176 177 3.541713 GCCCTGCTAGGTCCTCCG 61.542 72.222 0.00 0.00 39.05 4.63
177 178 3.541713 CCCTGCTAGGTCCTCCGC 61.542 72.222 0.00 0.00 39.05 5.54
178 179 3.541713 CCTGCTAGGTCCTCCGCC 61.542 72.222 0.00 0.00 39.05 6.13
179 180 2.759973 CTGCTAGGTCCTCCGCCA 60.760 66.667 0.00 0.00 39.05 5.69
180 181 3.075005 TGCTAGGTCCTCCGCCAC 61.075 66.667 0.00 0.00 39.05 5.01
181 182 2.760385 GCTAGGTCCTCCGCCACT 60.760 66.667 0.00 0.00 39.05 4.00
182 183 3.082579 GCTAGGTCCTCCGCCACTG 62.083 68.421 0.00 0.00 39.05 3.66
183 184 3.075005 TAGGTCCTCCGCCACTGC 61.075 66.667 0.00 0.00 39.05 4.40
192 193 3.283684 CGCCACTGCCGGTTTGAA 61.284 61.111 1.90 0.00 0.00 2.69
193 194 2.335011 GCCACTGCCGGTTTGAAC 59.665 61.111 1.90 0.00 0.00 3.18
194 195 2.637025 CCACTGCCGGTTTGAACG 59.363 61.111 1.90 0.00 0.00 3.95
195 196 2.184167 CCACTGCCGGTTTGAACGT 61.184 57.895 1.90 0.00 0.00 3.99
196 197 1.278637 CACTGCCGGTTTGAACGTC 59.721 57.895 1.90 0.00 0.00 4.34
197 198 1.145377 ACTGCCGGTTTGAACGTCT 59.855 52.632 1.90 0.00 0.00 4.18
198 199 0.390124 ACTGCCGGTTTGAACGTCTA 59.610 50.000 1.90 0.00 0.00 2.59
199 200 1.202557 ACTGCCGGTTTGAACGTCTAA 60.203 47.619 1.90 0.00 0.00 2.10
200 201 1.868498 CTGCCGGTTTGAACGTCTAAA 59.132 47.619 1.90 0.00 0.00 1.85
201 202 2.286872 TGCCGGTTTGAACGTCTAAAA 58.713 42.857 1.90 0.00 0.00 1.52
202 203 2.879646 TGCCGGTTTGAACGTCTAAAAT 59.120 40.909 1.90 0.00 0.00 1.82
203 204 3.058777 TGCCGGTTTGAACGTCTAAAATC 60.059 43.478 1.90 0.00 0.00 2.17
204 205 3.668757 GCCGGTTTGAACGTCTAAAATCC 60.669 47.826 1.90 0.00 0.00 3.01
205 206 3.120095 CCGGTTTGAACGTCTAAAATCCC 60.120 47.826 0.00 0.00 0.00 3.85
206 207 3.499157 CGGTTTGAACGTCTAAAATCCCA 59.501 43.478 0.00 0.00 0.00 4.37
207 208 4.612033 CGGTTTGAACGTCTAAAATCCCAC 60.612 45.833 0.00 0.00 0.00 4.61
208 209 4.276431 GGTTTGAACGTCTAAAATCCCACA 59.724 41.667 0.00 0.00 0.00 4.17
209 210 5.221087 GGTTTGAACGTCTAAAATCCCACAA 60.221 40.000 0.00 0.00 0.00 3.33
210 211 6.267070 GTTTGAACGTCTAAAATCCCACAAA 58.733 36.000 0.00 0.00 0.00 2.83
211 212 5.427036 TGAACGTCTAAAATCCCACAAAC 57.573 39.130 0.00 0.00 0.00 2.93
212 213 5.127491 TGAACGTCTAAAATCCCACAAACT 58.873 37.500 0.00 0.00 0.00 2.66
213 214 5.008217 TGAACGTCTAAAATCCCACAAACTG 59.992 40.000 0.00 0.00 0.00 3.16
214 215 3.818773 ACGTCTAAAATCCCACAAACTGG 59.181 43.478 0.00 0.00 40.26 4.00
215 216 4.069304 CGTCTAAAATCCCACAAACTGGA 58.931 43.478 0.00 0.00 43.95 3.86
216 217 4.154195 CGTCTAAAATCCCACAAACTGGAG 59.846 45.833 0.00 0.00 43.95 3.86
217 218 4.459337 GTCTAAAATCCCACAAACTGGAGG 59.541 45.833 0.00 0.00 43.95 4.30
218 219 3.611025 AAAATCCCACAAACTGGAGGA 57.389 42.857 0.00 0.00 43.95 3.71
219 220 2.887151 AATCCCACAAACTGGAGGAG 57.113 50.000 0.00 0.00 43.95 3.69
220 221 0.995024 ATCCCACAAACTGGAGGAGG 59.005 55.000 0.00 0.00 43.95 4.30
221 222 0.401395 TCCCACAAACTGGAGGAGGT 60.401 55.000 0.00 0.00 43.95 3.85
222 223 0.478507 CCCACAAACTGGAGGAGGTT 59.521 55.000 0.00 0.00 43.95 3.50
223 224 1.133482 CCCACAAACTGGAGGAGGTTT 60.133 52.381 0.00 0.00 43.95 3.27
227 228 1.956477 CAAACTGGAGGAGGTTTGTGG 59.044 52.381 9.51 0.00 43.92 4.17
228 229 0.478507 AACTGGAGGAGGTTTGTGGG 59.521 55.000 0.00 0.00 0.00 4.61
229 230 0.697854 ACTGGAGGAGGTTTGTGGGT 60.698 55.000 0.00 0.00 0.00 4.51
230 231 0.250901 CTGGAGGAGGTTTGTGGGTG 60.251 60.000 0.00 0.00 0.00 4.61
231 232 0.991355 TGGAGGAGGTTTGTGGGTGT 60.991 55.000 0.00 0.00 0.00 4.16
232 233 0.250770 GGAGGAGGTTTGTGGGTGTC 60.251 60.000 0.00 0.00 0.00 3.67
233 234 0.250770 GAGGAGGTTTGTGGGTGTCC 60.251 60.000 0.00 0.00 0.00 4.02
234 235 1.599797 GGAGGTTTGTGGGTGTCCG 60.600 63.158 0.00 0.00 35.24 4.79
235 236 1.599797 GAGGTTTGTGGGTGTCCGG 60.600 63.158 0.00 0.00 35.24 5.14
236 237 2.047213 GAGGTTTGTGGGTGTCCGGA 62.047 60.000 0.00 0.00 35.24 5.14
237 238 1.895231 GGTTTGTGGGTGTCCGGAC 60.895 63.158 28.17 28.17 35.24 4.79
238 239 2.109387 TTTGTGGGTGTCCGGACG 59.891 61.111 28.70 0.00 35.24 4.79
239 240 2.733669 TTTGTGGGTGTCCGGACGT 61.734 57.895 28.70 0.00 35.24 4.34
240 241 2.647680 TTTGTGGGTGTCCGGACGTC 62.648 60.000 28.70 22.60 35.24 4.34
241 242 4.368543 GTGGGTGTCCGGACGTCC 62.369 72.222 29.19 29.19 35.24 4.79
260 261 3.966215 CCACGTAGGCACCAACTG 58.034 61.111 0.00 0.00 0.00 3.16
261 262 1.369692 CCACGTAGGCACCAACTGA 59.630 57.895 0.00 0.00 0.00 3.41
262 263 0.949105 CCACGTAGGCACCAACTGAC 60.949 60.000 0.00 0.00 0.00 3.51
263 264 1.006571 ACGTAGGCACCAACTGACG 60.007 57.895 0.00 0.00 36.42 4.35
264 265 1.736645 CGTAGGCACCAACTGACGG 60.737 63.158 0.00 0.00 30.12 4.79
265 266 1.370064 GTAGGCACCAACTGACGGT 59.630 57.895 0.00 0.00 37.16 4.83
266 267 0.669625 GTAGGCACCAACTGACGGTC 60.670 60.000 0.00 0.00 33.25 4.79
267 268 1.823169 TAGGCACCAACTGACGGTCC 61.823 60.000 5.55 0.00 33.25 4.46
268 269 2.668550 GCACCAACTGACGGTCCC 60.669 66.667 5.55 0.00 33.25 4.46
269 270 2.825982 CACCAACTGACGGTCCCA 59.174 61.111 5.55 0.00 33.25 4.37
270 271 1.374947 CACCAACTGACGGTCCCAT 59.625 57.895 5.55 0.00 33.25 4.00
271 272 0.673644 CACCAACTGACGGTCCCATC 60.674 60.000 5.55 0.00 33.25 3.51
272 273 1.078426 CCAACTGACGGTCCCATCC 60.078 63.158 5.55 0.00 0.00 3.51
273 274 1.676968 CAACTGACGGTCCCATCCA 59.323 57.895 5.55 0.00 0.00 3.41
274 275 0.036164 CAACTGACGGTCCCATCCAA 59.964 55.000 5.55 0.00 0.00 3.53
275 276 0.768622 AACTGACGGTCCCATCCAAA 59.231 50.000 5.55 0.00 0.00 3.28
276 277 0.768622 ACTGACGGTCCCATCCAAAA 59.231 50.000 5.55 0.00 0.00 2.44
277 278 1.165270 CTGACGGTCCCATCCAAAAC 58.835 55.000 5.55 0.00 0.00 2.43
278 279 0.250989 TGACGGTCCCATCCAAAACC 60.251 55.000 5.55 0.00 0.00 3.27
279 280 0.963856 GACGGTCCCATCCAAAACCC 60.964 60.000 0.00 0.00 0.00 4.11
280 281 1.382629 CGGTCCCATCCAAAACCCT 59.617 57.895 0.00 0.00 0.00 4.34
281 282 0.251608 CGGTCCCATCCAAAACCCTT 60.252 55.000 0.00 0.00 0.00 3.95
282 283 1.266178 GGTCCCATCCAAAACCCTTG 58.734 55.000 0.00 0.00 0.00 3.61
283 284 1.482365 GGTCCCATCCAAAACCCTTGT 60.482 52.381 0.00 0.00 0.00 3.16
284 285 1.618343 GTCCCATCCAAAACCCTTGTG 59.382 52.381 0.00 0.00 0.00 3.33
285 286 0.975887 CCCATCCAAAACCCTTGTGG 59.024 55.000 0.00 0.00 41.37 4.17
286 287 0.321346 CCATCCAAAACCCTTGTGGC 59.679 55.000 0.00 0.00 37.83 5.01
287 288 1.047002 CATCCAAAACCCTTGTGGCA 58.953 50.000 0.00 0.00 37.83 4.92
288 289 1.047801 ATCCAAAACCCTTGTGGCAC 58.952 50.000 11.55 11.55 37.83 5.01
289 290 1.067250 CCAAAACCCTTGTGGCACG 59.933 57.895 13.77 0.49 37.83 5.34
290 291 1.671901 CCAAAACCCTTGTGGCACGT 61.672 55.000 13.77 1.20 37.83 4.49
291 292 0.174617 CAAAACCCTTGTGGCACGTT 59.825 50.000 13.77 7.95 37.83 3.99
292 293 0.458260 AAAACCCTTGTGGCACGTTC 59.542 50.000 13.77 0.00 37.83 3.95
293 294 1.388837 AAACCCTTGTGGCACGTTCC 61.389 55.000 13.77 0.00 37.83 3.62
294 295 3.353836 CCCTTGTGGCACGTTCCG 61.354 66.667 13.77 0.00 0.00 4.30
295 296 4.025401 CCTTGTGGCACGTTCCGC 62.025 66.667 11.09 11.09 37.15 5.54
296 297 2.972505 CTTGTGGCACGTTCCGCT 60.973 61.111 18.49 0.00 37.51 5.52
297 298 2.954753 CTTGTGGCACGTTCCGCTC 61.955 63.158 18.49 3.43 37.51 5.03
298 299 4.980805 TGTGGCACGTTCCGCTCC 62.981 66.667 18.49 0.00 37.51 4.70
299 300 4.980805 GTGGCACGTTCCGCTCCA 62.981 66.667 10.72 0.00 33.93 3.86
300 301 4.680237 TGGCACGTTCCGCTCCAG 62.680 66.667 0.00 0.00 30.59 3.86
301 302 4.373116 GGCACGTTCCGCTCCAGA 62.373 66.667 0.00 0.00 0.00 3.86
302 303 2.357034 GCACGTTCCGCTCCAGAA 60.357 61.111 0.00 0.00 0.00 3.02
303 304 1.741770 GCACGTTCCGCTCCAGAAT 60.742 57.895 0.00 0.00 0.00 2.40
304 305 1.696832 GCACGTTCCGCTCCAGAATC 61.697 60.000 0.00 0.00 0.00 2.52
305 306 0.389817 CACGTTCCGCTCCAGAATCA 60.390 55.000 0.00 0.00 0.00 2.57
306 307 0.537188 ACGTTCCGCTCCAGAATCAT 59.463 50.000 0.00 0.00 0.00 2.45
307 308 1.212616 CGTTCCGCTCCAGAATCATC 58.787 55.000 0.00 0.00 0.00 2.92
308 309 1.471501 CGTTCCGCTCCAGAATCATCA 60.472 52.381 0.00 0.00 0.00 3.07
309 310 2.804572 CGTTCCGCTCCAGAATCATCAT 60.805 50.000 0.00 0.00 0.00 2.45
310 311 3.209410 GTTCCGCTCCAGAATCATCATT 58.791 45.455 0.00 0.00 0.00 2.57
311 312 2.842457 TCCGCTCCAGAATCATCATTG 58.158 47.619 0.00 0.00 0.00 2.82
312 313 1.266175 CCGCTCCAGAATCATCATTGC 59.734 52.381 0.00 0.00 0.00 3.56
313 314 1.944709 CGCTCCAGAATCATCATTGCA 59.055 47.619 0.00 0.00 0.00 4.08
314 315 2.286831 CGCTCCAGAATCATCATTGCAC 60.287 50.000 0.00 0.00 0.00 4.57
315 316 2.686405 GCTCCAGAATCATCATTGCACA 59.314 45.455 0.00 0.00 0.00 4.57
316 317 3.318275 GCTCCAGAATCATCATTGCACAT 59.682 43.478 0.00 0.00 0.00 3.21
317 318 4.202121 GCTCCAGAATCATCATTGCACATT 60.202 41.667 0.00 0.00 0.00 2.71
318 319 5.509716 TCCAGAATCATCATTGCACATTC 57.490 39.130 0.00 0.00 0.00 2.67
319 320 4.035909 TCCAGAATCATCATTGCACATTCG 59.964 41.667 0.00 0.00 0.00 3.34
320 321 4.201980 CCAGAATCATCATTGCACATTCGT 60.202 41.667 0.00 0.00 0.00 3.85
321 322 4.733405 CAGAATCATCATTGCACATTCGTG 59.267 41.667 0.00 0.00 46.56 4.35
329 330 3.951332 CACATTCGTGCCACTCGT 58.049 55.556 0.00 0.00 36.06 4.18
330 331 2.234613 CACATTCGTGCCACTCGTT 58.765 52.632 0.00 0.00 36.06 3.85
331 332 1.424403 CACATTCGTGCCACTCGTTA 58.576 50.000 0.00 0.00 36.06 3.18
332 333 1.390123 CACATTCGTGCCACTCGTTAG 59.610 52.381 0.00 0.00 36.06 2.34
333 334 1.000506 ACATTCGTGCCACTCGTTAGT 59.999 47.619 0.00 0.00 35.91 2.24
334 335 5.230584 CACATTCGTGCCACTCGTTAGTG 62.231 52.174 0.00 0.00 42.50 2.74
345 346 3.304559 CACTCGTTAGTGCAGTTCATAGC 59.695 47.826 0.00 0.00 46.28 2.97
346 347 3.056821 ACTCGTTAGTGCAGTTCATAGCA 60.057 43.478 0.00 0.00 38.65 3.49
347 348 3.511699 TCGTTAGTGCAGTTCATAGCAG 58.488 45.455 0.00 0.00 42.14 4.24
348 349 3.192633 TCGTTAGTGCAGTTCATAGCAGA 59.807 43.478 0.00 0.00 42.14 4.26
349 350 4.115516 CGTTAGTGCAGTTCATAGCAGAT 58.884 43.478 0.00 0.00 42.14 2.90
350 351 4.026228 CGTTAGTGCAGTTCATAGCAGATG 60.026 45.833 0.00 0.00 42.14 2.90
351 352 2.286872 AGTGCAGTTCATAGCAGATGC 58.713 47.619 0.00 0.00 42.14 3.91
361 362 2.592861 GCAGATGCTAAGGGGCGG 60.593 66.667 0.00 0.00 38.21 6.13
362 363 3.106986 GCAGATGCTAAGGGGCGGA 62.107 63.158 0.00 0.00 38.21 5.54
363 364 1.227674 CAGATGCTAAGGGGCGGAC 60.228 63.158 0.00 0.00 34.52 4.79
364 365 2.280186 GATGCTAAGGGGCGGACG 60.280 66.667 0.00 0.00 34.52 4.79
365 366 4.547367 ATGCTAAGGGGCGGACGC 62.547 66.667 8.39 8.39 41.06 5.19
376 377 3.538841 CGGACGCCTATCGCATTC 58.461 61.111 0.00 0.00 43.23 2.67
377 378 1.299850 CGGACGCCTATCGCATTCA 60.300 57.895 0.00 0.00 43.23 2.57
378 379 0.667487 CGGACGCCTATCGCATTCAT 60.667 55.000 0.00 0.00 43.23 2.57
379 380 0.792640 GGACGCCTATCGCATTCATG 59.207 55.000 0.00 0.00 43.23 3.07
390 391 3.719699 CATTCATGCCGGTCAAACC 57.280 52.632 1.90 0.00 34.05 3.27
400 401 3.227667 GTCAAACCGACGTGACCG 58.772 61.111 0.00 0.00 38.57 4.79
411 412 4.736896 GTGACCGGACGGCTGACC 62.737 72.222 9.46 0.29 39.32 4.02
413 414 4.436998 GACCGGACGGCTGACCAG 62.437 72.222 9.46 5.26 39.32 4.00
434 435 3.425713 AGCGTCAATGCTGGCACG 61.426 61.111 0.00 0.00 45.28 5.34
435 436 4.465512 GCGTCAATGCTGGCACGG 62.466 66.667 0.00 0.00 38.10 4.94
454 455 2.442212 GCTACCGAGAAGCCTATTCC 57.558 55.000 0.00 0.00 33.73 3.01
455 456 1.336056 GCTACCGAGAAGCCTATTCCG 60.336 57.143 0.00 0.00 33.73 4.30
456 457 1.269998 CTACCGAGAAGCCTATTCCGG 59.730 57.143 0.00 0.00 37.86 5.14
469 470 3.224324 TCCGGCCTGGATAGCGTC 61.224 66.667 11.66 0.00 43.74 5.19
478 479 1.209504 CTGGATAGCGTCCCAAAGGAA 59.790 52.381 8.46 0.00 46.38 3.36
479 480 1.843851 TGGATAGCGTCCCAAAGGAAT 59.156 47.619 8.46 0.00 46.38 3.01
480 481 2.222027 GGATAGCGTCCCAAAGGAATG 58.778 52.381 0.09 0.00 46.38 2.67
481 482 2.158813 GGATAGCGTCCCAAAGGAATGA 60.159 50.000 0.09 0.00 46.38 2.57
482 483 3.541632 GATAGCGTCCCAAAGGAATGAA 58.458 45.455 0.00 0.00 46.38 2.57
483 484 2.286365 AGCGTCCCAAAGGAATGAAA 57.714 45.000 0.00 0.00 46.38 2.69
484 485 2.593026 AGCGTCCCAAAGGAATGAAAA 58.407 42.857 0.00 0.00 46.38 2.29
485 486 3.165071 AGCGTCCCAAAGGAATGAAAAT 58.835 40.909 0.00 0.00 46.38 1.82
486 487 3.193479 AGCGTCCCAAAGGAATGAAAATC 59.807 43.478 0.00 0.00 46.38 2.17
487 488 3.193479 GCGTCCCAAAGGAATGAAAATCT 59.807 43.478 0.00 0.00 46.38 2.40
488 489 4.321974 GCGTCCCAAAGGAATGAAAATCTT 60.322 41.667 0.00 0.00 46.38 2.40
489 490 5.783111 CGTCCCAAAGGAATGAAAATCTTT 58.217 37.500 0.00 0.00 46.38 2.52
490 491 5.863935 CGTCCCAAAGGAATGAAAATCTTTC 59.136 40.000 0.00 0.00 46.38 2.62
491 492 6.516527 CGTCCCAAAGGAATGAAAATCTTTCA 60.517 38.462 4.41 4.41 46.38 2.69
492 493 7.216494 GTCCCAAAGGAATGAAAATCTTTCAA 58.784 34.615 5.96 0.00 46.38 2.69
493 494 7.714813 GTCCCAAAGGAATGAAAATCTTTCAAA 59.285 33.333 5.96 0.00 46.38 2.69
494 495 8.270744 TCCCAAAGGAATGAAAATCTTTCAAAA 58.729 29.630 5.96 0.00 40.08 2.44
495 496 9.070179 CCCAAAGGAATGAAAATCTTTCAAAAT 57.930 29.630 5.96 0.00 33.65 1.82
496 497 9.887406 CCAAAGGAATGAAAATCTTTCAAAATG 57.113 29.630 5.96 1.62 33.65 2.32
497 498 9.887406 CAAAGGAATGAAAATCTTTCAAAATGG 57.113 29.630 5.96 0.00 33.65 3.16
498 499 9.631257 AAAGGAATGAAAATCTTTCAAAATGGT 57.369 25.926 5.96 0.00 33.65 3.55
499 500 8.611654 AGGAATGAAAATCTTTCAAAATGGTG 57.388 30.769 5.96 0.00 33.65 4.17
500 501 7.173735 AGGAATGAAAATCTTTCAAAATGGTGC 59.826 33.333 5.96 0.00 33.65 5.01
501 502 7.173735 GGAATGAAAATCTTTCAAAATGGTGCT 59.826 33.333 5.96 0.00 33.65 4.40
502 503 9.206870 GAATGAAAATCTTTCAAAATGGTGCTA 57.793 29.630 5.96 0.00 32.65 3.49
503 504 9.558396 AATGAAAATCTTTCAAAATGGTGCTAA 57.442 25.926 5.96 0.00 31.55 3.09
504 505 8.954950 TGAAAATCTTTCAAAATGGTGCTAAA 57.045 26.923 0.00 0.00 0.00 1.85
505 506 8.825745 TGAAAATCTTTCAAAATGGTGCTAAAC 58.174 29.630 0.00 0.00 0.00 2.01
506 507 8.962884 AAAATCTTTCAAAATGGTGCTAAACT 57.037 26.923 0.00 0.00 0.00 2.66
507 508 8.962884 AAATCTTTCAAAATGGTGCTAAACTT 57.037 26.923 0.00 0.00 0.00 2.66
508 509 8.962884 AATCTTTCAAAATGGTGCTAAACTTT 57.037 26.923 0.00 0.00 0.00 2.66
509 510 7.769272 TCTTTCAAAATGGTGCTAAACTTTG 57.231 32.000 0.00 0.00 0.00 2.77
510 511 7.551585 TCTTTCAAAATGGTGCTAAACTTTGA 58.448 30.769 0.00 0.00 31.94 2.69
511 512 7.491048 TCTTTCAAAATGGTGCTAAACTTTGAC 59.509 33.333 0.00 0.00 32.95 3.18
512 513 5.596845 TCAAAATGGTGCTAAACTTTGACC 58.403 37.500 0.00 0.00 29.99 4.02
513 514 5.127845 TCAAAATGGTGCTAAACTTTGACCA 59.872 36.000 0.00 0.00 40.89 4.02
514 515 5.606348 AAATGGTGCTAAACTTTGACCAA 57.394 34.783 0.00 0.00 40.05 3.67
515 516 5.606348 AATGGTGCTAAACTTTGACCAAA 57.394 34.783 0.00 0.00 40.05 3.28
516 517 5.606348 ATGGTGCTAAACTTTGACCAAAA 57.394 34.783 0.00 0.00 40.05 2.44
533 534 7.595311 GACCAAAAGTCAAAACTGTGATTTT 57.405 32.000 0.00 0.00 45.55 1.82
534 535 8.696410 GACCAAAAGTCAAAACTGTGATTTTA 57.304 30.769 0.00 0.00 45.55 1.52
535 536 8.702163 ACCAAAAGTCAAAACTGTGATTTTAG 57.298 30.769 0.00 0.00 36.70 1.85
536 537 7.277760 ACCAAAAGTCAAAACTGTGATTTTAGC 59.722 33.333 0.00 0.00 36.70 3.09
537 538 7.254421 CCAAAAGTCAAAACTGTGATTTTAGCC 60.254 37.037 0.00 0.00 36.70 3.93
538 539 6.715347 AAGTCAAAACTGTGATTTTAGCCT 57.285 33.333 0.00 0.00 35.36 4.58
539 540 6.715347 AGTCAAAACTGTGATTTTAGCCTT 57.285 33.333 0.00 0.00 33.32 4.35
540 541 7.112452 AGTCAAAACTGTGATTTTAGCCTTT 57.888 32.000 0.00 0.00 33.32 3.11
541 542 8.232913 AGTCAAAACTGTGATTTTAGCCTTTA 57.767 30.769 0.00 0.00 33.32 1.85
542 543 8.135529 AGTCAAAACTGTGATTTTAGCCTTTAC 58.864 33.333 0.00 0.00 33.32 2.01
543 544 7.918562 GTCAAAACTGTGATTTTAGCCTTTACA 59.081 33.333 0.00 0.00 30.57 2.41
544 545 7.918562 TCAAAACTGTGATTTTAGCCTTTACAC 59.081 33.333 0.00 0.00 30.57 2.90
545 546 7.582667 AAACTGTGATTTTAGCCTTTACACT 57.417 32.000 0.00 0.00 0.00 3.55
546 547 6.560253 ACTGTGATTTTAGCCTTTACACTG 57.440 37.500 0.00 0.00 34.01 3.66
547 548 5.473504 ACTGTGATTTTAGCCTTTACACTGG 59.526 40.000 0.00 0.00 32.82 4.00
548 549 4.764823 TGTGATTTTAGCCTTTACACTGGG 59.235 41.667 0.00 0.00 0.00 4.45
549 550 4.765339 GTGATTTTAGCCTTTACACTGGGT 59.235 41.667 0.00 0.00 37.80 4.51
550 551 5.941647 GTGATTTTAGCCTTTACACTGGGTA 59.058 40.000 0.00 0.00 35.51 3.69
551 552 5.941647 TGATTTTAGCCTTTACACTGGGTAC 59.058 40.000 0.00 0.00 36.24 3.34
552 553 4.978438 TTTAGCCTTTACACTGGGTACA 57.022 40.909 0.00 0.00 36.24 2.90
561 562 3.121030 CTGGGTACAGCAGCGCAC 61.121 66.667 11.47 0.00 38.01 5.34
599 600 2.031012 CGCACACCTCCTGCTCAA 59.969 61.111 0.00 0.00 32.03 3.02
623 624 3.814615 CTGCACGCACACCTCCTGT 62.815 63.158 0.00 0.00 0.00 4.00
626 627 1.084370 GCACGCACACCTCCTGTATC 61.084 60.000 0.00 0.00 0.00 2.24
630 631 1.878522 CACACCTCCTGTATCGCGC 60.879 63.158 0.00 0.00 0.00 6.86
662 663 2.780094 CCTCGCCTCTGCATCTCGT 61.780 63.158 0.00 0.00 37.32 4.18
784 785 0.520404 TTCTTCTTCGTCGGGACTCG 59.480 55.000 0.00 0.00 40.90 4.18
799 803 4.351938 TCGTCCTTGCCGTGTCCG 62.352 66.667 0.00 0.00 0.00 4.79
968 987 5.915196 GCTGTGTCACTTGAATTTTTCTACC 59.085 40.000 4.27 0.00 0.00 3.18
969 988 6.459573 GCTGTGTCACTTGAATTTTTCTACCA 60.460 38.462 4.27 0.00 0.00 3.25
993 1012 5.888161 ACCCAAATTGACACCTATCTGAATC 59.112 40.000 0.00 0.00 0.00 2.52
1158 1177 0.910338 AGCTCTGTGATGTGAGGCAT 59.090 50.000 0.00 0.00 41.24 4.40
1159 1178 2.113807 AGCTCTGTGATGTGAGGCATA 58.886 47.619 0.00 0.00 38.06 3.14
1262 1281 1.750193 TGCCTGCAGCCTTATGTTAC 58.250 50.000 8.66 0.00 42.71 2.50
1267 1286 4.023707 GCCTGCAGCCTTATGTTACAATAG 60.024 45.833 8.66 0.00 34.35 1.73
1305 1324 3.196901 CCCCTGCACAACTACATAGTACA 59.803 47.826 0.00 0.00 34.99 2.90
1306 1325 4.433615 CCCTGCACAACTACATAGTACAG 58.566 47.826 0.00 0.00 34.99 2.74
1307 1326 4.081642 CCCTGCACAACTACATAGTACAGT 60.082 45.833 0.00 0.00 34.99 3.55
1308 1327 5.126545 CCCTGCACAACTACATAGTACAGTA 59.873 44.000 0.00 0.00 34.99 2.74
1309 1328 6.266323 CCTGCACAACTACATAGTACAGTAG 58.734 44.000 14.73 14.73 42.57 2.57
1486 1515 0.107654 ACTTGGGTTAGGATGAGCGC 60.108 55.000 0.00 0.00 0.00 5.92
1549 1578 2.495669 TGATGCGGAACAGTCTGATGTA 59.504 45.455 6.91 0.00 31.70 2.29
1857 1886 4.681074 AAACCCCCATTGTGTGTTAAAG 57.319 40.909 0.00 0.00 0.00 1.85
1945 1974 6.164417 TCTACCTGTAAACAGTGCTAACAA 57.836 37.500 9.17 0.00 42.27 2.83
2364 2393 6.806668 TGATGTTTCTGTATGGATCCTGTA 57.193 37.500 14.23 3.26 0.00 2.74
2584 2614 6.705863 AAGAAAAGAAGTGTTCAGCATCTT 57.294 33.333 0.00 0.00 30.16 2.40
3151 3181 4.989279 AGGCATCAATTTCTGCGTTAAT 57.011 36.364 3.57 0.00 39.30 1.40
3155 3185 4.422840 CATCAATTTCTGCGTTAATGCCA 58.577 39.130 16.88 4.65 0.00 4.92
3312 3342 2.624674 AAACTGGTGCTGAAGGGCGT 62.625 55.000 0.00 0.00 34.52 5.68
3412 3442 6.417191 AGTGGCAAATACAAGTATACAACG 57.583 37.500 5.50 0.00 0.00 4.10
3582 3612 3.759581 AGATGCACTGGTCTGTCAAAAT 58.240 40.909 0.00 0.00 0.00 1.82
3979 4009 3.306364 CCGATCCGAGCCTTGATTCTTAT 60.306 47.826 0.00 0.00 0.00 1.73
4418 4448 2.604855 GCTCACTGACGAGAACGAGAAA 60.605 50.000 0.00 0.00 42.66 2.52
4622 4652 4.380841 CTGCCATAAACATCACAGCAAT 57.619 40.909 0.00 0.00 0.00 3.56
4671 4701 5.386958 TGTAGTGACACCTTATGACAGAC 57.613 43.478 0.84 0.00 33.49 3.51
4705 4736 5.016051 TGACAGAGTATGGCAGATTCTTC 57.984 43.478 4.24 7.03 44.15 2.87
4732 4763 2.621070 TCAGTTTTGGCTCTAGGGAGT 58.379 47.619 0.00 0.00 41.38 3.85
4765 4796 3.682377 CCGTGCCAAAAATGGATTTTACC 59.318 43.478 0.00 0.00 39.20 2.85
4850 4881 6.555360 TCCAGGGGAAAAACTTAAGCATTTAA 59.445 34.615 1.29 0.00 0.00 1.52
4853 4884 7.931407 CAGGGGAAAAACTTAAGCATTTAAACT 59.069 33.333 1.29 1.18 0.00 2.66
4855 4886 8.556194 GGGGAAAAACTTAAGCATTTAAACTTG 58.444 33.333 1.29 0.00 0.00 3.16
4863 4894 9.108284 ACTTAAGCATTTAAACTTGTGCAAAAT 57.892 25.926 12.66 0.00 39.94 1.82
4865 4896 6.303021 AGCATTTAAACTTGTGCAAAATGG 57.697 33.333 15.78 0.00 39.94 3.16
4871 4902 3.264998 ACTTGTGCAAAATGGCAAGTT 57.735 38.095 11.22 0.00 46.93 2.66
4946 4990 5.534207 TCCCATATGGCATGAAAATTGTC 57.466 39.130 16.97 0.00 0.00 3.18
5083 5130 2.987149 CGCGTCTAGATTCTTGTTGTGT 59.013 45.455 0.00 0.00 0.00 3.72
5111 5159 4.967084 TTTAGACTTGGCTGGTAGACAA 57.033 40.909 0.00 0.00 41.84 3.18
5183 5233 7.764901 CCCACTAACTAACCTATTTCTCTCAAC 59.235 40.741 0.00 0.00 0.00 3.18
5188 5238 8.553459 AACTAACCTATTTCTCTCAACATGTG 57.447 34.615 0.00 0.00 0.00 3.21
5204 5255 0.393402 TGTGAGCATGCCACCTCATC 60.393 55.000 26.33 13.43 39.95 2.92
5268 5319 3.286329 ACATGCAAGCATATCACCTCA 57.714 42.857 7.29 0.00 34.91 3.86
5295 5346 3.925913 GCAACATGTATGGAAAAATGCGT 59.074 39.130 0.00 0.00 0.00 5.24
5452 5507 6.332976 AGGGTCAATATCCTCTTCAATGTT 57.667 37.500 0.00 0.00 24.85 2.71
5510 5565 1.390123 GTCACGTCCATCATTGTGTCG 59.610 52.381 0.00 0.00 34.08 4.35
5515 5570 1.026182 TCCATCATTGTGTCGGCAGC 61.026 55.000 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.733556 TGTATTAACCAGAAACTTGATACATGT 57.266 29.630 2.69 2.69 28.92 3.21
73 74 8.626526 CCTACGGGCAATAATAAAGTTGTTATT 58.373 33.333 1.27 1.27 35.65 1.40
74 75 7.229907 CCCTACGGGCAATAATAAAGTTGTTAT 59.770 37.037 0.00 0.00 35.35 1.89
75 76 6.543100 CCCTACGGGCAATAATAAAGTTGTTA 59.457 38.462 0.00 0.00 35.35 2.41
76 77 5.358725 CCCTACGGGCAATAATAAAGTTGTT 59.641 40.000 0.00 0.00 35.35 2.83
77 78 4.885325 CCCTACGGGCAATAATAAAGTTGT 59.115 41.667 0.00 0.00 35.35 3.32
78 79 5.432885 CCCTACGGGCAATAATAAAGTTG 57.567 43.478 0.00 0.00 35.35 3.16
93 94 3.139077 GTGAAGGAAATATGCCCTACGG 58.861 50.000 0.00 0.00 31.36 4.02
94 95 3.809832 CAGTGAAGGAAATATGCCCTACG 59.190 47.826 0.00 0.00 31.36 3.51
95 96 3.565902 GCAGTGAAGGAAATATGCCCTAC 59.434 47.826 0.00 0.00 31.36 3.18
96 97 3.201930 TGCAGTGAAGGAAATATGCCCTA 59.798 43.478 0.00 0.00 32.77 3.53
97 98 2.025037 TGCAGTGAAGGAAATATGCCCT 60.025 45.455 0.00 0.00 32.77 5.19
98 99 2.378038 TGCAGTGAAGGAAATATGCCC 58.622 47.619 0.00 0.00 32.77 5.36
99 100 3.797865 GCATGCAGTGAAGGAAATATGCC 60.798 47.826 14.21 0.00 35.03 4.40
100 101 3.181484 TGCATGCAGTGAAGGAAATATGC 60.181 43.478 18.46 0.00 39.89 3.14
101 102 4.642445 TGCATGCAGTGAAGGAAATATG 57.358 40.909 18.46 0.00 0.00 1.78
102 103 4.023450 CGATGCATGCAGTGAAGGAAATAT 60.023 41.667 26.69 3.67 0.00 1.28
103 104 3.313249 CGATGCATGCAGTGAAGGAAATA 59.687 43.478 26.69 0.00 0.00 1.40
104 105 2.098607 CGATGCATGCAGTGAAGGAAAT 59.901 45.455 26.69 4.49 0.00 2.17
105 106 1.469703 CGATGCATGCAGTGAAGGAAA 59.530 47.619 26.69 0.00 0.00 3.13
106 107 1.089112 CGATGCATGCAGTGAAGGAA 58.911 50.000 26.69 0.00 0.00 3.36
107 108 0.745486 CCGATGCATGCAGTGAAGGA 60.745 55.000 26.69 0.00 0.00 3.36
108 109 0.745486 TCCGATGCATGCAGTGAAGG 60.745 55.000 26.69 21.45 0.00 3.46
109 110 0.376152 GTCCGATGCATGCAGTGAAG 59.624 55.000 26.69 13.96 0.00 3.02
110 111 0.321475 TGTCCGATGCATGCAGTGAA 60.321 50.000 26.69 8.96 0.00 3.18
111 112 0.321475 TTGTCCGATGCATGCAGTGA 60.321 50.000 26.69 18.11 0.00 3.41
112 113 0.522626 TTTGTCCGATGCATGCAGTG 59.477 50.000 26.69 19.44 0.00 3.66
113 114 1.402968 GATTTGTCCGATGCATGCAGT 59.597 47.619 26.69 14.02 0.00 4.40
114 115 1.402613 TGATTTGTCCGATGCATGCAG 59.597 47.619 26.69 13.25 0.00 4.41
115 116 1.461559 TGATTTGTCCGATGCATGCA 58.538 45.000 25.04 25.04 0.00 3.96
116 117 2.456989 CTTGATTTGTCCGATGCATGC 58.543 47.619 11.82 11.82 0.00 4.06
117 118 2.797087 GCCTTGATTTGTCCGATGCATG 60.797 50.000 2.46 0.00 0.00 4.06
118 119 1.406539 GCCTTGATTTGTCCGATGCAT 59.593 47.619 0.00 0.00 0.00 3.96
119 120 0.810648 GCCTTGATTTGTCCGATGCA 59.189 50.000 0.00 0.00 0.00 3.96
120 121 0.810648 TGCCTTGATTTGTCCGATGC 59.189 50.000 0.00 0.00 0.00 3.91
121 122 1.402968 CCTGCCTTGATTTGTCCGATG 59.597 52.381 0.00 0.00 0.00 3.84
122 123 1.683011 CCCTGCCTTGATTTGTCCGAT 60.683 52.381 0.00 0.00 0.00 4.18
123 124 0.322456 CCCTGCCTTGATTTGTCCGA 60.322 55.000 0.00 0.00 0.00 4.55
124 125 0.322456 TCCCTGCCTTGATTTGTCCG 60.322 55.000 0.00 0.00 0.00 4.79
125 126 1.753073 CATCCCTGCCTTGATTTGTCC 59.247 52.381 0.00 0.00 0.00 4.02
126 127 1.753073 CCATCCCTGCCTTGATTTGTC 59.247 52.381 0.00 0.00 0.00 3.18
127 128 1.856629 CCATCCCTGCCTTGATTTGT 58.143 50.000 0.00 0.00 0.00 2.83
128 129 0.462789 GCCATCCCTGCCTTGATTTG 59.537 55.000 0.00 0.00 0.00 2.32
129 130 0.688749 GGCCATCCCTGCCTTGATTT 60.689 55.000 0.00 0.00 45.70 2.17
130 131 1.075748 GGCCATCCCTGCCTTGATT 60.076 57.895 0.00 0.00 45.70 2.57
131 132 2.605299 GGCCATCCCTGCCTTGAT 59.395 61.111 0.00 0.00 45.70 2.57
141 142 4.759205 AAGGGTTGGCGGCCATCC 62.759 66.667 32.16 32.16 41.37 3.51
142 143 3.451894 CAAGGGTTGGCGGCCATC 61.452 66.667 24.49 21.69 31.53 3.51
150 151 1.379044 CTAGCAGGGCAAGGGTTGG 60.379 63.158 0.00 0.00 0.00 3.77
151 152 1.379044 CCTAGCAGGGCAAGGGTTG 60.379 63.158 0.00 0.00 0.00 3.77
152 153 1.852626 ACCTAGCAGGGCAAGGGTT 60.853 57.895 7.06 0.00 40.58 4.11
153 154 2.204151 ACCTAGCAGGGCAAGGGT 60.204 61.111 7.06 0.00 40.58 4.34
154 155 2.592308 GACCTAGCAGGGCAAGGG 59.408 66.667 3.41 0.00 45.15 3.95
159 160 3.541713 CGGAGGACCTAGCAGGGC 61.542 72.222 0.00 3.64 45.05 5.19
160 161 3.541713 GCGGAGGACCTAGCAGGG 61.542 72.222 14.60 0.71 40.58 4.45
161 162 3.541713 GGCGGAGGACCTAGCAGG 61.542 72.222 19.43 1.16 42.49 4.85
162 163 2.759973 TGGCGGAGGACCTAGCAG 60.760 66.667 19.43 0.59 0.00 4.24
163 164 3.075005 GTGGCGGAGGACCTAGCA 61.075 66.667 19.43 6.62 0.00 3.49
164 165 2.760385 AGTGGCGGAGGACCTAGC 60.760 66.667 11.85 11.85 0.00 3.42
165 166 3.082579 GCAGTGGCGGAGGACCTAG 62.083 68.421 0.00 0.00 0.00 3.02
166 167 3.075005 GCAGTGGCGGAGGACCTA 61.075 66.667 0.00 0.00 0.00 3.08
176 177 2.335011 GTTCAAACCGGCAGTGGC 59.665 61.111 6.62 6.62 40.13 5.01
177 178 2.113131 GACGTTCAAACCGGCAGTGG 62.113 60.000 0.00 0.00 32.28 4.00
178 179 1.157870 AGACGTTCAAACCGGCAGTG 61.158 55.000 0.00 0.00 35.22 3.66
179 180 0.390124 TAGACGTTCAAACCGGCAGT 59.610 50.000 0.00 0.00 35.22 4.40
180 181 1.504359 TTAGACGTTCAAACCGGCAG 58.496 50.000 0.00 0.00 35.22 4.85
181 182 1.950828 TTTAGACGTTCAAACCGGCA 58.049 45.000 0.00 0.00 35.22 5.69
182 183 3.485633 GATTTTAGACGTTCAAACCGGC 58.514 45.455 0.00 0.00 0.00 6.13
183 184 3.120095 GGGATTTTAGACGTTCAAACCGG 60.120 47.826 0.00 0.00 0.00 5.28
184 185 3.499157 TGGGATTTTAGACGTTCAAACCG 59.501 43.478 0.00 0.00 0.00 4.44
185 186 4.276431 TGTGGGATTTTAGACGTTCAAACC 59.724 41.667 0.00 0.00 0.00 3.27
186 187 5.427036 TGTGGGATTTTAGACGTTCAAAC 57.573 39.130 0.00 0.00 0.00 2.93
187 188 6.095720 AGTTTGTGGGATTTTAGACGTTCAAA 59.904 34.615 0.00 0.00 0.00 2.69
188 189 5.591067 AGTTTGTGGGATTTTAGACGTTCAA 59.409 36.000 0.00 0.00 0.00 2.69
189 190 5.008217 CAGTTTGTGGGATTTTAGACGTTCA 59.992 40.000 0.00 0.00 0.00 3.18
190 191 5.449304 CAGTTTGTGGGATTTTAGACGTTC 58.551 41.667 0.00 0.00 0.00 3.95
191 192 4.277423 CCAGTTTGTGGGATTTTAGACGTT 59.723 41.667 0.00 0.00 43.63 3.99
192 193 3.818773 CCAGTTTGTGGGATTTTAGACGT 59.181 43.478 0.00 0.00 43.63 4.34
193 194 4.419522 CCAGTTTGTGGGATTTTAGACG 57.580 45.455 0.00 0.00 43.63 4.18
208 209 1.133482 CCCACAAACCTCCTCCAGTTT 60.133 52.381 0.00 0.00 36.65 2.66
209 210 0.478507 CCCACAAACCTCCTCCAGTT 59.521 55.000 0.00 0.00 0.00 3.16
210 211 0.697854 ACCCACAAACCTCCTCCAGT 60.698 55.000 0.00 0.00 0.00 4.00
211 212 0.250901 CACCCACAAACCTCCTCCAG 60.251 60.000 0.00 0.00 0.00 3.86
212 213 0.991355 ACACCCACAAACCTCCTCCA 60.991 55.000 0.00 0.00 0.00 3.86
213 214 0.250770 GACACCCACAAACCTCCTCC 60.251 60.000 0.00 0.00 0.00 4.30
214 215 0.250770 GGACACCCACAAACCTCCTC 60.251 60.000 0.00 0.00 0.00 3.71
215 216 1.844130 GGACACCCACAAACCTCCT 59.156 57.895 0.00 0.00 0.00 3.69
216 217 1.599797 CGGACACCCACAAACCTCC 60.600 63.158 0.00 0.00 0.00 4.30
217 218 1.599797 CCGGACACCCACAAACCTC 60.600 63.158 0.00 0.00 0.00 3.85
218 219 2.073716 TCCGGACACCCACAAACCT 61.074 57.895 0.00 0.00 0.00 3.50
219 220 1.895231 GTCCGGACACCCACAAACC 60.895 63.158 29.75 0.00 0.00 3.27
220 221 2.248835 CGTCCGGACACCCACAAAC 61.249 63.158 32.80 3.87 0.00 2.93
221 222 2.109387 CGTCCGGACACCCACAAA 59.891 61.111 32.80 0.00 0.00 2.83
222 223 3.154584 GACGTCCGGACACCCACAA 62.155 63.158 32.80 0.00 0.00 3.33
223 224 3.608662 GACGTCCGGACACCCACA 61.609 66.667 32.80 0.00 0.00 4.17
224 225 4.368543 GGACGTCCGGACACCCAC 62.369 72.222 32.80 17.69 0.00 4.61
243 244 0.949105 GTCAGTTGGTGCCTACGTGG 60.949 60.000 0.00 0.00 39.35 4.94
244 245 1.282248 CGTCAGTTGGTGCCTACGTG 61.282 60.000 0.00 0.00 0.00 4.49
245 246 1.006571 CGTCAGTTGGTGCCTACGT 60.007 57.895 0.00 0.00 0.00 3.57
246 247 1.736645 CCGTCAGTTGGTGCCTACG 60.737 63.158 0.00 0.00 0.00 3.51
247 248 0.669625 GACCGTCAGTTGGTGCCTAC 60.670 60.000 0.00 0.00 40.63 3.18
248 249 1.669440 GACCGTCAGTTGGTGCCTA 59.331 57.895 0.00 0.00 40.63 3.93
249 250 2.426023 GACCGTCAGTTGGTGCCT 59.574 61.111 0.00 0.00 40.63 4.75
250 251 2.668550 GGACCGTCAGTTGGTGCC 60.669 66.667 0.00 0.00 41.53 5.01
251 252 2.668550 GGGACCGTCAGTTGGTGC 60.669 66.667 0.00 0.00 46.10 5.01
252 253 0.673644 GATGGGACCGTCAGTTGGTG 60.674 60.000 5.70 0.00 40.63 4.17
253 254 1.677552 GATGGGACCGTCAGTTGGT 59.322 57.895 5.70 0.00 44.10 3.67
254 255 1.078426 GGATGGGACCGTCAGTTGG 60.078 63.158 12.32 0.00 33.86 3.77
255 256 0.036164 TTGGATGGGACCGTCAGTTG 59.964 55.000 12.32 0.00 33.86 3.16
256 257 0.768622 TTTGGATGGGACCGTCAGTT 59.231 50.000 12.32 0.00 33.86 3.16
257 258 0.768622 TTTTGGATGGGACCGTCAGT 59.231 50.000 12.32 0.00 33.86 3.41
258 259 1.165270 GTTTTGGATGGGACCGTCAG 58.835 55.000 12.32 0.00 33.86 3.51
259 260 0.250989 GGTTTTGGATGGGACCGTCA 60.251 55.000 12.32 0.00 33.86 4.35
260 261 0.963856 GGGTTTTGGATGGGACCGTC 60.964 60.000 1.83 1.83 32.91 4.79
261 262 1.076014 GGGTTTTGGATGGGACCGT 59.924 57.895 0.00 0.00 32.91 4.83
262 263 0.251608 AAGGGTTTTGGATGGGACCG 60.252 55.000 0.00 0.00 32.91 4.79
263 264 1.266178 CAAGGGTTTTGGATGGGACC 58.734 55.000 0.00 0.00 0.00 4.46
264 265 1.618343 CACAAGGGTTTTGGATGGGAC 59.382 52.381 0.00 0.00 0.00 4.46
265 266 1.482177 CCACAAGGGTTTTGGATGGGA 60.482 52.381 0.00 0.00 31.39 4.37
266 267 0.975887 CCACAAGGGTTTTGGATGGG 59.024 55.000 0.00 0.00 31.39 4.00
267 268 0.321346 GCCACAAGGGTTTTGGATGG 59.679 55.000 0.00 0.00 39.65 3.51
268 269 1.047002 TGCCACAAGGGTTTTGGATG 58.953 50.000 0.00 0.00 39.65 3.51
269 270 1.047801 GTGCCACAAGGGTTTTGGAT 58.952 50.000 0.00 0.00 39.65 3.41
270 271 1.388065 CGTGCCACAAGGGTTTTGGA 61.388 55.000 0.00 0.00 39.65 3.53
271 272 1.067250 CGTGCCACAAGGGTTTTGG 59.933 57.895 0.00 0.00 39.65 3.28
272 273 0.174617 AACGTGCCACAAGGGTTTTG 59.825 50.000 0.00 0.00 39.65 2.44
273 274 0.458260 GAACGTGCCACAAGGGTTTT 59.542 50.000 0.00 0.00 39.65 2.43
274 275 1.388837 GGAACGTGCCACAAGGGTTT 61.389 55.000 8.05 0.00 39.65 3.27
275 276 1.826487 GGAACGTGCCACAAGGGTT 60.826 57.895 8.05 0.00 39.65 4.11
276 277 2.203294 GGAACGTGCCACAAGGGT 60.203 61.111 8.05 0.00 39.65 4.34
289 290 2.315925 TGATGATTCTGGAGCGGAAC 57.684 50.000 0.00 0.00 31.12 3.62
290 291 3.208594 CAATGATGATTCTGGAGCGGAA 58.791 45.455 0.00 0.00 33.01 4.30
291 292 2.842457 CAATGATGATTCTGGAGCGGA 58.158 47.619 0.00 0.00 0.00 5.54
292 293 1.266175 GCAATGATGATTCTGGAGCGG 59.734 52.381 0.00 0.00 0.00 5.52
293 294 1.944709 TGCAATGATGATTCTGGAGCG 59.055 47.619 0.00 0.00 0.00 5.03
294 295 2.686405 TGTGCAATGATGATTCTGGAGC 59.314 45.455 0.00 0.00 0.00 4.70
295 296 5.515797 AATGTGCAATGATGATTCTGGAG 57.484 39.130 0.00 0.00 0.00 3.86
296 297 4.035909 CGAATGTGCAATGATGATTCTGGA 59.964 41.667 0.00 0.00 0.00 3.86
297 298 4.201980 ACGAATGTGCAATGATGATTCTGG 60.202 41.667 0.00 0.00 0.00 3.86
298 299 4.733405 CACGAATGTGCAATGATGATTCTG 59.267 41.667 0.00 0.00 39.67 3.02
299 300 4.916870 CACGAATGTGCAATGATGATTCT 58.083 39.130 0.00 0.00 39.67 2.40
312 313 3.179615 ACTAACGAGTGGCACGAATGTG 61.180 50.000 12.71 5.64 41.06 3.21
313 314 1.000506 ACTAACGAGTGGCACGAATGT 59.999 47.619 12.71 6.63 33.41 2.71
314 315 1.710013 ACTAACGAGTGGCACGAATG 58.290 50.000 12.71 5.97 33.41 2.67
324 325 3.056821 TGCTATGAACTGCACTAACGAGT 60.057 43.478 0.00 0.00 35.80 4.18
325 326 3.511699 TGCTATGAACTGCACTAACGAG 58.488 45.455 0.00 0.00 33.94 4.18
326 327 3.192633 TCTGCTATGAACTGCACTAACGA 59.807 43.478 0.00 0.00 35.20 3.85
327 328 3.511699 TCTGCTATGAACTGCACTAACG 58.488 45.455 0.00 0.00 35.20 3.18
328 329 4.260538 GCATCTGCTATGAACTGCACTAAC 60.261 45.833 4.08 0.00 38.21 2.34
329 330 3.873361 GCATCTGCTATGAACTGCACTAA 59.127 43.478 4.08 0.00 38.21 2.24
330 331 3.461061 GCATCTGCTATGAACTGCACTA 58.539 45.455 4.08 0.00 38.21 2.74
331 332 2.286872 GCATCTGCTATGAACTGCACT 58.713 47.619 4.08 0.00 38.21 4.40
332 333 2.752144 GCATCTGCTATGAACTGCAC 57.248 50.000 4.08 0.00 38.21 4.57
344 345 2.592861 CCGCCCCTTAGCATCTGC 60.593 66.667 0.00 0.00 42.49 4.26
345 346 1.227674 GTCCGCCCCTTAGCATCTG 60.228 63.158 0.00 0.00 0.00 2.90
346 347 2.797278 CGTCCGCCCCTTAGCATCT 61.797 63.158 0.00 0.00 0.00 2.90
347 348 2.280186 CGTCCGCCCCTTAGCATC 60.280 66.667 0.00 0.00 0.00 3.91
348 349 4.547367 GCGTCCGCCCCTTAGCAT 62.547 66.667 0.00 0.00 34.56 3.79
372 373 3.719699 GGTTTGACCGGCATGAATG 57.280 52.632 0.00 0.00 0.00 2.67
383 384 2.305127 CCGGTCACGTCGGTTTGAC 61.305 63.158 6.03 6.04 44.53 3.18
384 385 2.027897 CCGGTCACGTCGGTTTGA 59.972 61.111 6.03 0.00 42.33 2.69
385 386 2.027897 TCCGGTCACGTCGGTTTG 59.972 61.111 13.17 0.00 46.82 2.93
386 387 2.028043 GTCCGGTCACGTCGGTTT 59.972 61.111 13.17 0.00 46.82 3.27
387 388 4.332637 CGTCCGGTCACGTCGGTT 62.333 66.667 13.17 0.00 46.82 4.44
394 395 4.736896 GGTCAGCCGTCCGGTCAC 62.737 72.222 7.66 0.00 37.65 3.67
396 397 4.436998 CTGGTCAGCCGTCCGGTC 62.437 72.222 7.66 0.00 37.67 4.79
407 408 3.881952 ATTGACGCTGCGCTGGTCA 62.882 57.895 23.51 24.11 38.80 4.02
408 409 3.121030 ATTGACGCTGCGCTGGTC 61.121 61.111 23.51 20.84 0.00 4.02
409 410 3.425713 CATTGACGCTGCGCTGGT 61.426 61.111 23.51 11.73 0.00 4.00
410 411 4.824166 GCATTGACGCTGCGCTGG 62.824 66.667 23.51 8.60 0.00 4.85
411 412 3.796443 AGCATTGACGCTGCGCTG 61.796 61.111 23.51 15.03 44.38 5.18
417 418 3.425713 CGTGCCAGCATTGACGCT 61.426 61.111 0.00 0.00 45.21 5.07
418 419 4.465512 CCGTGCCAGCATTGACGC 62.466 66.667 0.00 0.00 0.00 5.19
419 420 4.465512 GCCGTGCCAGCATTGACG 62.466 66.667 0.00 0.00 0.00 4.35
420 421 1.745115 TAGCCGTGCCAGCATTGAC 60.745 57.895 0.00 0.00 0.00 3.18
421 422 1.745115 GTAGCCGTGCCAGCATTGA 60.745 57.895 0.00 0.00 0.00 2.57
422 423 2.764314 GGTAGCCGTGCCAGCATTG 61.764 63.158 0.00 0.00 0.00 2.82
423 424 2.438434 GGTAGCCGTGCCAGCATT 60.438 61.111 0.00 0.00 0.00 3.56
424 425 4.838152 CGGTAGCCGTGCCAGCAT 62.838 66.667 0.00 0.00 42.73 3.79
435 436 1.336056 CGGAATAGGCTTCTCGGTAGC 60.336 57.143 0.00 0.00 37.91 3.58
436 437 1.269998 CCGGAATAGGCTTCTCGGTAG 59.730 57.143 0.00 0.00 33.63 3.18
437 438 1.325355 CCGGAATAGGCTTCTCGGTA 58.675 55.000 0.00 0.00 33.63 4.02
438 439 2.125178 CCGGAATAGGCTTCTCGGT 58.875 57.895 0.00 0.00 33.63 4.69
461 462 3.194005 TCATTCCTTTGGGACGCTATC 57.806 47.619 0.00 0.00 42.05 2.08
462 463 3.644966 TTCATTCCTTTGGGACGCTAT 57.355 42.857 0.00 0.00 42.05 2.97
463 464 3.426787 TTTCATTCCTTTGGGACGCTA 57.573 42.857 0.00 0.00 42.05 4.26
464 465 2.286365 TTTCATTCCTTTGGGACGCT 57.714 45.000 0.00 0.00 42.05 5.07
465 466 3.193479 AGATTTTCATTCCTTTGGGACGC 59.807 43.478 0.00 0.00 42.05 5.19
466 467 5.391312 AAGATTTTCATTCCTTTGGGACG 57.609 39.130 0.00 0.00 42.05 4.79
467 468 6.758254 TGAAAGATTTTCATTCCTTTGGGAC 58.242 36.000 0.36 0.00 42.05 4.46
468 469 6.992664 TGAAAGATTTTCATTCCTTTGGGA 57.007 33.333 0.36 0.00 40.36 4.37
469 470 8.449251 TTTTGAAAGATTTTCATTCCTTTGGG 57.551 30.769 5.20 0.00 0.00 4.12
470 471 9.887406 CATTTTGAAAGATTTTCATTCCTTTGG 57.113 29.630 5.20 0.00 0.00 3.28
471 472 9.887406 CCATTTTGAAAGATTTTCATTCCTTTG 57.113 29.630 5.20 0.20 0.00 2.77
472 473 9.631257 ACCATTTTGAAAGATTTTCATTCCTTT 57.369 25.926 5.20 0.00 0.00 3.11
473 474 9.059260 CACCATTTTGAAAGATTTTCATTCCTT 57.941 29.630 5.20 0.00 0.00 3.36
474 475 7.173735 GCACCATTTTGAAAGATTTTCATTCCT 59.826 33.333 5.20 0.00 0.00 3.36
475 476 7.173735 AGCACCATTTTGAAAGATTTTCATTCC 59.826 33.333 5.20 0.00 0.00 3.01
476 477 8.091385 AGCACCATTTTGAAAGATTTTCATTC 57.909 30.769 5.20 0.00 0.00 2.67
477 478 9.558396 TTAGCACCATTTTGAAAGATTTTCATT 57.442 25.926 5.20 0.00 0.00 2.57
478 479 9.558396 TTTAGCACCATTTTGAAAGATTTTCAT 57.442 25.926 5.20 0.00 0.00 2.57
479 480 8.825745 GTTTAGCACCATTTTGAAAGATTTTCA 58.174 29.630 0.36 0.36 0.00 2.69
480 481 9.045223 AGTTTAGCACCATTTTGAAAGATTTTC 57.955 29.630 0.00 0.00 0.00 2.29
481 482 8.962884 AGTTTAGCACCATTTTGAAAGATTTT 57.037 26.923 0.00 0.00 0.00 1.82
482 483 8.962884 AAGTTTAGCACCATTTTGAAAGATTT 57.037 26.923 0.00 0.00 0.00 2.17
483 484 8.829612 CAAAGTTTAGCACCATTTTGAAAGATT 58.170 29.630 0.00 0.00 0.00 2.40
484 485 8.203485 TCAAAGTTTAGCACCATTTTGAAAGAT 58.797 29.630 4.05 0.00 33.20 2.40
485 486 7.491048 GTCAAAGTTTAGCACCATTTTGAAAGA 59.509 33.333 7.11 0.00 36.61 2.52
486 487 7.254421 GGTCAAAGTTTAGCACCATTTTGAAAG 60.254 37.037 7.11 0.00 36.61 2.62
487 488 6.536941 GGTCAAAGTTTAGCACCATTTTGAAA 59.463 34.615 7.11 0.00 36.61 2.69
488 489 6.045955 GGTCAAAGTTTAGCACCATTTTGAA 58.954 36.000 7.11 0.00 36.61 2.69
489 490 5.127845 TGGTCAAAGTTTAGCACCATTTTGA 59.872 36.000 8.51 0.00 31.99 2.69
490 491 5.355596 TGGTCAAAGTTTAGCACCATTTTG 58.644 37.500 8.51 0.00 31.99 2.44
491 492 5.606348 TGGTCAAAGTTTAGCACCATTTT 57.394 34.783 8.51 0.00 31.99 1.82
492 493 5.606348 TTGGTCAAAGTTTAGCACCATTT 57.394 34.783 11.97 0.00 36.99 2.32
493 494 5.606348 TTTGGTCAAAGTTTAGCACCATT 57.394 34.783 11.97 0.00 36.99 3.16
494 495 5.600696 CTTTTGGTCAAAGTTTAGCACCAT 58.399 37.500 11.97 0.00 36.99 3.55
495 496 5.004922 CTTTTGGTCAAAGTTTAGCACCA 57.995 39.130 8.51 8.51 37.67 4.17
509 510 7.595311 AAAATCACAGTTTTGACTTTTGGTC 57.405 32.000 0.00 0.00 44.70 4.02
510 511 7.277760 GCTAAAATCACAGTTTTGACTTTTGGT 59.722 33.333 0.00 0.00 33.62 3.67
511 512 7.254421 GGCTAAAATCACAGTTTTGACTTTTGG 60.254 37.037 0.00 0.00 33.62 3.28
512 513 7.492344 AGGCTAAAATCACAGTTTTGACTTTTG 59.508 33.333 0.00 0.00 33.62 2.44
513 514 7.555965 AGGCTAAAATCACAGTTTTGACTTTT 58.444 30.769 0.00 0.00 33.62 2.27
514 515 7.112452 AGGCTAAAATCACAGTTTTGACTTT 57.888 32.000 0.00 0.00 33.62 2.66
515 516 6.715347 AGGCTAAAATCACAGTTTTGACTT 57.285 33.333 0.00 0.00 33.62 3.01
516 517 6.715347 AAGGCTAAAATCACAGTTTTGACT 57.285 33.333 0.00 0.00 33.62 3.41
517 518 7.918562 TGTAAAGGCTAAAATCACAGTTTTGAC 59.081 33.333 0.00 0.00 33.62 3.18
518 519 7.918562 GTGTAAAGGCTAAAATCACAGTTTTGA 59.081 33.333 0.00 0.00 33.62 2.69
519 520 7.920682 AGTGTAAAGGCTAAAATCACAGTTTTG 59.079 33.333 0.00 0.00 33.62 2.44
520 521 7.920682 CAGTGTAAAGGCTAAAATCACAGTTTT 59.079 33.333 0.00 0.00 35.60 2.43
521 522 7.425606 CAGTGTAAAGGCTAAAATCACAGTTT 58.574 34.615 0.00 0.00 0.00 2.66
522 523 6.016276 CCAGTGTAAAGGCTAAAATCACAGTT 60.016 38.462 0.00 0.00 0.00 3.16
523 524 5.473504 CCAGTGTAAAGGCTAAAATCACAGT 59.526 40.000 0.00 0.00 0.00 3.55
524 525 5.106157 CCCAGTGTAAAGGCTAAAATCACAG 60.106 44.000 0.00 0.00 0.00 3.66
525 526 4.764823 CCCAGTGTAAAGGCTAAAATCACA 59.235 41.667 0.00 0.00 0.00 3.58
526 527 4.765339 ACCCAGTGTAAAGGCTAAAATCAC 59.235 41.667 0.00 0.00 0.00 3.06
527 528 4.993028 ACCCAGTGTAAAGGCTAAAATCA 58.007 39.130 0.00 0.00 0.00 2.57
528 529 5.941647 TGTACCCAGTGTAAAGGCTAAAATC 59.058 40.000 0.00 0.00 0.00 2.17
529 530 5.883180 TGTACCCAGTGTAAAGGCTAAAAT 58.117 37.500 0.00 0.00 0.00 1.82
530 531 5.307544 TGTACCCAGTGTAAAGGCTAAAA 57.692 39.130 0.00 0.00 0.00 1.52
531 532 4.804934 GCTGTACCCAGTGTAAAGGCTAAA 60.805 45.833 0.00 0.00 41.02 1.85
532 533 3.307199 GCTGTACCCAGTGTAAAGGCTAA 60.307 47.826 0.00 0.00 41.02 3.09
533 534 2.235402 GCTGTACCCAGTGTAAAGGCTA 59.765 50.000 0.00 0.00 41.02 3.93
534 535 1.003233 GCTGTACCCAGTGTAAAGGCT 59.997 52.381 0.00 0.00 41.02 4.58
535 536 1.271163 TGCTGTACCCAGTGTAAAGGC 60.271 52.381 0.00 0.00 41.02 4.35
536 537 2.699954 CTGCTGTACCCAGTGTAAAGG 58.300 52.381 0.00 0.00 41.02 3.11
537 538 2.076863 GCTGCTGTACCCAGTGTAAAG 58.923 52.381 11.02 0.00 41.02 1.85
538 539 1.606994 CGCTGCTGTACCCAGTGTAAA 60.607 52.381 13.21 0.00 41.02 2.01
539 540 0.037697 CGCTGCTGTACCCAGTGTAA 60.038 55.000 13.21 0.00 41.02 2.41
540 541 1.589630 CGCTGCTGTACCCAGTGTA 59.410 57.895 13.21 0.00 41.02 2.90
541 542 2.343758 CGCTGCTGTACCCAGTGT 59.656 61.111 13.21 0.00 41.02 3.55
542 543 3.121030 GCGCTGCTGTACCCAGTG 61.121 66.667 15.82 15.82 41.02 3.66
543 544 3.625897 TGCGCTGCTGTACCCAGT 61.626 61.111 9.73 0.00 41.02 4.00
544 545 3.121030 GTGCGCTGCTGTACCCAG 61.121 66.667 9.73 6.33 41.91 4.45
579 580 4.363990 AGCAGGAGGTGTGCGTCG 62.364 66.667 0.00 0.00 46.06 5.12
580 581 2.433318 GAGCAGGAGGTGTGCGTC 60.433 66.667 0.00 0.00 46.06 5.19
581 582 2.721971 CTTGAGCAGGAGGTGTGCGT 62.722 60.000 0.00 0.00 46.06 5.24
582 583 2.031012 TTGAGCAGGAGGTGTGCG 59.969 61.111 0.00 0.00 46.06 5.34
583 584 2.331132 GCTTGAGCAGGAGGTGTGC 61.331 63.158 0.00 0.00 41.59 4.57
584 585 3.978272 GCTTGAGCAGGAGGTGTG 58.022 61.111 0.00 0.00 41.59 3.82
606 607 1.826340 ATACAGGAGGTGTGCGTGCA 61.826 55.000 0.00 0.00 40.69 4.57
616 617 4.647615 CGGGCGCGATACAGGAGG 62.648 72.222 19.65 0.00 0.00 4.30
968 987 4.588899 TCAGATAGGTGTCAATTTGGGTG 58.411 43.478 0.00 0.00 0.00 4.61
969 988 4.927267 TCAGATAGGTGTCAATTTGGGT 57.073 40.909 0.00 0.00 0.00 4.51
993 1012 1.450312 GGAGTTGGACATCCTGGCG 60.450 63.158 0.00 0.00 36.82 5.69
1158 1177 5.247862 ACTGCACATGAACATTCATCTGTA 58.752 37.500 0.00 2.84 45.62 2.74
1159 1178 4.077108 ACTGCACATGAACATTCATCTGT 58.923 39.130 0.00 0.01 45.62 3.41
1262 1281 5.181748 GGGATATCAAGCAGGCTACTATTG 58.818 45.833 4.83 0.00 0.00 1.90
1267 1286 1.981495 AGGGGATATCAAGCAGGCTAC 59.019 52.381 4.83 0.00 0.00 3.58
1486 1515 4.294232 AGCTGAATATGACATCTTCGTCG 58.706 43.478 8.53 0.00 38.84 5.12
1549 1578 2.497273 GGGCACTGCAAGGAAATTGTAT 59.503 45.455 2.82 0.00 41.29 2.29
2197 2226 5.469760 TGACAATTTCACAGTCCATGTAGTG 59.530 40.000 0.00 0.00 41.41 2.74
2364 2393 8.947115 AGCAGCGTTTTATAAAAGAAACTCTAT 58.053 29.630 10.92 0.00 31.27 1.98
2384 2413 1.300233 GATTCCCCTCGTAGCAGCG 60.300 63.158 0.00 0.00 0.00 5.18
2584 2614 3.909732 TGAAAAGAAGCCCTCAAAGGAA 58.090 40.909 0.00 0.00 37.67 3.36
3046 3076 3.630312 GGTGATGTATGCGGTTATGGTTT 59.370 43.478 0.00 0.00 0.00 3.27
3141 3171 2.092968 AGAGGAATGGCATTAACGCAGA 60.093 45.455 13.65 0.00 0.00 4.26
3151 3181 2.297033 GCACAAAGAAAGAGGAATGGCA 59.703 45.455 0.00 0.00 0.00 4.92
3155 3185 5.649831 GTCCATAGCACAAAGAAAGAGGAAT 59.350 40.000 0.00 0.00 0.00 3.01
3312 3342 3.210227 TGTTTTCGCCTCATCAAGAACA 58.790 40.909 0.00 0.00 0.00 3.18
3412 3442 6.423905 TGTGTTTAGTCTTTGCACAGAGTATC 59.576 38.462 16.26 13.06 35.48 2.24
3582 3612 8.806429 TGCAGATTTGGAAATACTGAAGAATA 57.194 30.769 0.00 0.00 31.29 1.75
3979 4009 3.940221 TGTCACGCAAATCATCATGATCA 59.060 39.130 4.86 0.00 35.76 2.92
4052 4082 1.440476 GTAGGGTGGGACCGAATCG 59.560 63.158 0.00 0.00 39.83 3.34
4207 4237 2.509336 CAGGTCGATGTCCGGCAC 60.509 66.667 0.00 0.00 46.37 5.01
4418 4448 0.829333 ACTCGAGCTGATGCCTCAAT 59.171 50.000 13.61 0.00 40.80 2.57
4622 4652 3.307691 CCTCAAGGCACTCAGGATTAACA 60.308 47.826 0.00 0.00 38.49 2.41
4732 4763 1.549243 TTGGCACGGAGGAGCATGTA 61.549 55.000 0.00 0.00 34.39 2.29
4743 4774 3.682377 GGTAAAATCCATTTTTGGCACGG 59.318 43.478 2.68 0.00 40.24 4.94
4765 4796 9.910511 CACATCTTTTCTTTTTCTTTGACATTG 57.089 29.630 0.00 0.00 0.00 2.82
4798 4829 4.279982 TGCATGTATCATTTGGGTGTGAT 58.720 39.130 0.00 0.00 38.53 3.06
4853 4884 3.257469 TCAACTTGCCATTTTGCACAA 57.743 38.095 0.00 0.00 41.88 3.33
4855 4886 2.033832 CGTTCAACTTGCCATTTTGCAC 60.034 45.455 0.00 0.00 41.88 4.57
4865 4896 1.851658 ACATTTGGCGTTCAACTTGC 58.148 45.000 0.00 0.00 34.67 4.01
4871 4902 5.752892 TTAAGTGTAACATTTGGCGTTCA 57.247 34.783 0.00 0.00 41.43 3.18
4909 4953 2.418368 TGGGATAGCAATGCTTCGTT 57.582 45.000 14.85 0.00 40.44 3.85
4912 4956 3.129988 GCCATATGGGATAGCAATGCTTC 59.870 47.826 23.30 10.70 38.48 3.86
4946 4990 7.138081 TCACATTAATGTAACAAGTGTGCTTG 58.862 34.615 20.39 3.99 46.76 4.01
5034 5080 5.869649 TGGCTCTAAGAAGCATATACACA 57.130 39.130 0.00 0.00 44.35 3.72
5083 5130 5.043737 ACCAGCCAAGTCTAAAACAGTAA 57.956 39.130 0.00 0.00 0.00 2.24
5111 5159 9.606631 GAGATTACATGTTGAGAGAAATAGGTT 57.393 33.333 2.30 0.00 0.00 3.50
5188 5238 1.760192 AAAGATGAGGTGGCATGCTC 58.240 50.000 18.92 7.73 0.00 4.26
5231 5282 6.258230 TGCATGTTGAGAGAAATTGGTTAG 57.742 37.500 0.00 0.00 0.00 2.34
5268 5319 6.757947 GCATTTTTCCATACATGTTGCATACT 59.242 34.615 2.30 0.00 0.00 2.12
5311 5362 3.881688 AGGTGACATTATTCATCTGCAGC 59.118 43.478 9.47 0.00 35.52 5.25
5312 5363 5.121105 TGAGGTGACATTATTCATCTGCAG 58.879 41.667 7.63 7.63 37.07 4.41
5452 5507 5.067936 TCGGCCTATTTTTGTTGAAAGAACA 59.932 36.000 0.00 0.00 0.00 3.18
5510 5565 3.376918 GGCCAACCTTCTGCTGCC 61.377 66.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.