Multiple sequence alignment - TraesCS7D01G313300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G313300 chr7D 100.000 4286 0 0 1 4286 397194433 397198718 0.000000e+00 7915
1 TraesCS7D01G313300 chr7D 81.073 634 96 20 1157 1776 396985142 396985765 6.440000e-133 484
2 TraesCS7D01G313300 chr7A 92.778 1994 99 29 1 1976 452758168 452756202 0.000000e+00 2843
3 TraesCS7D01G313300 chr7A 94.293 771 33 5 1976 2740 452756167 452755402 0.000000e+00 1170
4 TraesCS7D01G313300 chr7A 93.325 794 26 9 2744 3530 452755279 452754506 0.000000e+00 1147
5 TraesCS7D01G313300 chr7A 89.120 432 18 6 3881 4286 452752850 452752422 1.060000e-140 510
6 TraesCS7D01G313300 chr7A 77.635 854 139 41 962 1776 450965598 450966438 5.020000e-129 472
7 TraesCS7D01G313300 chr7A 88.068 352 24 10 3549 3888 452754342 452753997 6.680000e-108 401
8 TraesCS7D01G313300 chr7B 94.932 1539 50 21 1974 3492 400926175 400927705 0.000000e+00 2385
9 TraesCS7D01G313300 chr7B 96.672 1202 27 7 772 1969 400924945 400926137 0.000000e+00 1986
10 TraesCS7D01G313300 chr7B 89.947 567 21 9 3748 4286 400928090 400928648 0.000000e+00 699
11 TraesCS7D01G313300 chr7B 88.699 584 38 14 1 562 400924328 400924905 0.000000e+00 688
12 TraesCS7D01G313300 chr7B 80.349 631 98 21 1160 1776 400637579 400638197 5.050000e-124 455


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G313300 chr7D 397194433 397198718 4285 False 7915.0 7915 100.0000 1 4286 1 chr7D.!!$F2 4285
1 TraesCS7D01G313300 chr7D 396985142 396985765 623 False 484.0 484 81.0730 1157 1776 1 chr7D.!!$F1 619
2 TraesCS7D01G313300 chr7A 452752422 452758168 5746 True 1214.2 2843 91.5168 1 4286 5 chr7A.!!$R1 4285
3 TraesCS7D01G313300 chr7A 450965598 450966438 840 False 472.0 472 77.6350 962 1776 1 chr7A.!!$F1 814
4 TraesCS7D01G313300 chr7B 400924328 400928648 4320 False 1439.5 2385 92.5625 1 4286 4 chr7B.!!$F2 4285
5 TraesCS7D01G313300 chr7B 400637579 400638197 618 False 455.0 455 80.3490 1160 1776 1 chr7B.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 771 1.064003 ACCCTATGTGACACCAAGCA 58.936 50.0 2.45 0.0 0.00 3.91 F
1498 1595 0.776810 TCAAGGCCCATGGTGAGAAA 59.223 50.0 11.73 0.0 0.00 2.52 F
2670 2826 0.461516 ATCTGATGTGCCGAGCAGTG 60.462 55.0 0.00 0.0 40.08 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2668 2824 2.677836 TCATAAATGACTTGCTCGGCAC 59.322 45.455 0.00 0.0 38.71 5.01 R
2831 3110 2.632028 AGGCCATACAACAAATGCAACA 59.368 40.909 5.01 0.0 0.00 3.33 R
3763 4258 0.251341 GAGGATGTTGCCAAGGGTGT 60.251 55.000 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.158943 GGGGAATAGAGAGGAAACACGG 60.159 54.545 0.00 0.00 0.00 4.94
492 517 6.902341 TCAGAATTGTTTCCAGATTTCGAAG 58.098 36.000 0.00 0.00 31.84 3.79
501 526 5.046910 TCCAGATTTCGAAGATTGTTTGC 57.953 39.130 0.00 0.00 35.04 3.68
625 654 8.680707 AACCAAAAACCAAAAATGAAAAATCG 57.319 26.923 0.00 0.00 0.00 3.34
643 672 7.979444 AAAATCGAGATAAAACTGACAAGGA 57.021 32.000 0.00 0.00 0.00 3.36
682 715 2.101640 AAACCTGCCCAAAACCAGAT 57.898 45.000 0.00 0.00 0.00 2.90
683 716 1.341080 AACCTGCCCAAAACCAGATG 58.659 50.000 0.00 0.00 0.00 2.90
738 771 1.064003 ACCCTATGTGACACCAAGCA 58.936 50.000 2.45 0.00 0.00 3.91
756 789 2.092699 AGCAAATAAGTGGGAGAGGAGC 60.093 50.000 0.00 0.00 0.00 4.70
844 877 6.316694 CCTGTTGGACTAGGACACATGTGT 62.317 50.000 30.98 30.98 40.49 3.72
855 888 1.227943 ACATGTGTGAGCCGCAGTT 60.228 52.632 0.00 0.00 36.91 3.16
1214 1292 1.511305 GAAGGGCATCTCGTCGTCA 59.489 57.895 0.00 0.00 0.00 4.35
1241 1319 1.254026 CGTACAAGAGGACTCCACCA 58.746 55.000 0.00 0.00 0.00 4.17
1498 1595 0.776810 TCAAGGCCCATGGTGAGAAA 59.223 50.000 11.73 0.00 0.00 2.52
1529 1626 0.820871 CCCCCTCGTCTTTCTCAGAG 59.179 60.000 0.00 0.00 29.34 3.35
1536 1633 3.676093 TCGTCTTTCTCAGAGTGCTCTA 58.324 45.455 0.93 0.00 37.98 2.43
1777 1891 5.010719 CACCTGGAAGTAGTAAGTCACTCAA 59.989 44.000 0.00 0.00 38.80 3.02
1779 1893 6.071278 ACCTGGAAGTAGTAAGTCACTCAATC 60.071 42.308 0.00 0.00 38.80 2.67
1804 1918 5.751990 CCAATGCCATTAATCTTTCTTCTGC 59.248 40.000 0.00 0.00 0.00 4.26
1826 1940 4.025647 GCTATAGCTTCGGTGAATTGTGAC 60.026 45.833 17.75 0.00 38.21 3.67
1866 1981 2.348591 GCAAGTACAGTGAACAGTTCGC 60.349 50.000 17.71 17.71 40.41 4.70
1942 2057 4.924305 TGTTGAGTAGGAGTACGTGTTT 57.076 40.909 0.00 0.00 33.97 2.83
1969 2084 7.449086 GGTACTACTTCAGATGAGGCTACTTAT 59.551 40.741 0.00 0.00 0.00 1.73
1971 2086 8.998277 ACTACTTCAGATGAGGCTACTTATAA 57.002 34.615 0.00 0.00 0.00 0.98
1972 2087 9.422681 ACTACTTCAGATGAGGCTACTTATAAA 57.577 33.333 0.00 0.00 0.00 1.40
2006 2155 3.144506 CTGATCTGTTGGCTGTTCTGTT 58.855 45.455 0.00 0.00 0.00 3.16
2010 2159 2.170397 TCTGTTGGCTGTTCTGTTCTCA 59.830 45.455 0.00 0.00 0.00 3.27
2153 2302 1.704641 ACTGTAGTGGACACTGCTGA 58.295 50.000 25.43 7.24 42.44 4.26
2267 2416 9.784680 CAGACATTTTTGAAGATCTAAATGGAG 57.215 33.333 23.25 13.63 40.52 3.86
2325 2474 6.468333 ACAATTTGCCAGCATGATAATGTA 57.532 33.333 0.00 0.00 39.69 2.29
2441 2594 6.183360 GCAGTTTTGAAAAATGCAACTGGTTA 60.183 34.615 30.45 0.00 35.00 2.85
2474 2629 4.746535 TGTGTCATTATCCCACGTATGT 57.253 40.909 0.00 0.00 31.75 2.29
2586 2742 3.795623 ATTCTGTTGGCTGAATCATGC 57.204 42.857 0.00 0.00 38.39 4.06
2668 2824 1.863454 GTTATCTGATGTGCCGAGCAG 59.137 52.381 0.00 0.00 40.08 4.24
2670 2826 0.461516 ATCTGATGTGCCGAGCAGTG 60.462 55.000 0.00 0.00 40.08 3.66
2671 2827 2.743538 TGATGTGCCGAGCAGTGC 60.744 61.111 7.13 7.13 40.08 4.40
2680 2836 2.358003 GAGCAGTGCCGAGCAAGT 60.358 61.111 12.58 0.00 41.47 3.16
2691 2847 2.939103 GCCGAGCAAGTCATTTATGAGT 59.061 45.455 0.00 0.00 42.01 3.41
2806 3082 4.852138 CCGAAGGCAGTTCAATGATAATG 58.148 43.478 0.00 0.00 46.14 1.90
2830 3109 5.690857 GGTACGGCAGTTTATATTCACTCTC 59.309 44.000 0.00 0.00 0.00 3.20
2831 3110 5.599999 ACGGCAGTTTATATTCACTCTCT 57.400 39.130 0.00 0.00 0.00 3.10
2881 3160 6.316140 TGAATTTGTACACATATCAGACTGCC 59.684 38.462 0.00 0.00 0.00 4.85
2951 3231 4.355543 AATGTATGTTGCCAATCGTGTC 57.644 40.909 0.00 0.00 0.00 3.67
3219 3499 8.705134 TGTCTGTTAAACGACTGTTATAATGTG 58.295 33.333 0.00 0.00 37.31 3.21
3286 3566 5.109210 TCCAATAGTACATGTTGCTCTTCG 58.891 41.667 2.30 0.00 0.00 3.79
3350 3630 6.028987 GCGGTTTAGAAGTACTCTGAACTAG 58.971 44.000 19.50 16.42 45.56 2.57
3380 3660 8.097038 TCTAGTTCAGCATTCAAATACTTGAGT 58.903 33.333 0.00 0.00 42.48 3.41
3392 3672 9.796120 TTCAAATACTTGAGTGTTTTCGAATTT 57.204 25.926 0.00 0.00 42.48 1.82
3459 3743 8.314021 GGAGAATTTTGATTTGGTAAGGTTCAT 58.686 33.333 0.00 0.00 0.00 2.57
3468 3752 8.439971 TGATTTGGTAAGGTTCATATGCTAGAT 58.560 33.333 0.00 0.00 0.00 1.98
3483 3767 9.800433 CATATGCTAGATTCCTGTAGTATGAAG 57.200 37.037 0.00 0.00 28.72 3.02
3485 3769 6.136857 TGCTAGATTCCTGTAGTATGAAGGT 58.863 40.000 0.00 0.00 32.59 3.50
3532 3835 2.954318 CCCTTTATGAATGGTGCAGAGG 59.046 50.000 0.00 0.00 0.00 3.69
3553 4037 3.193267 GGTTTGCTGAGATGTTGCCATTA 59.807 43.478 0.00 0.00 0.00 1.90
3580 4064 7.471657 AATGCGTTCGTATTATGTTACATGA 57.528 32.000 8.26 0.00 0.00 3.07
3602 4090 7.979115 TGAACAAATTACTATAATTTGGCGC 57.021 32.000 26.16 18.56 46.44 6.53
3613 4101 1.535204 ATTTGGCGCCCTTGTTCCTG 61.535 55.000 26.77 0.00 0.00 3.86
3614 4102 2.920076 TTTGGCGCCCTTGTTCCTGT 62.920 55.000 26.77 0.00 0.00 4.00
3615 4103 2.597510 GGCGCCCTTGTTCCTGTT 60.598 61.111 18.11 0.00 0.00 3.16
3624 4119 2.227388 CCTTGTTCCTGTTAAGCTGCAG 59.773 50.000 10.11 10.11 0.00 4.41
3640 4135 2.227626 CTGCAGAAGTCGACTGAAGAGA 59.772 50.000 20.85 1.06 42.01 3.10
3695 4190 3.906846 TCAAAACCAATTGGCCACCTATT 59.093 39.130 24.79 6.41 39.32 1.73
3707 4202 4.346418 TGGCCACCTATTTCAAACAATGTT 59.654 37.500 0.00 0.00 0.00 2.71
3710 4205 4.690280 CCACCTATTTCAAACAATGTTGCC 59.310 41.667 0.00 0.00 0.00 4.52
3740 4235 8.825745 GTTCTCAAATTTTGGCATGAAAAACTA 58.174 29.630 9.18 0.00 29.78 2.24
3741 4236 8.954950 TCTCAAATTTTGGCATGAAAAACTAA 57.045 26.923 9.18 0.00 29.78 2.24
3763 4258 2.775384 AGTGTCCCTCAAACCTGTACAA 59.225 45.455 0.00 0.00 0.00 2.41
3810 4306 4.697514 ACACATGATCACTATGGCAGTAC 58.302 43.478 0.00 0.00 34.98 2.73
3812 4308 3.243873 ACATGATCACTATGGCAGTACGG 60.244 47.826 0.00 0.00 34.98 4.02
3862 4358 5.249420 AGAAGACTTTATTGACCTCAAGGC 58.751 41.667 0.00 0.00 39.47 4.35
3880 4376 2.025037 AGGCCTCCACATCAAGCAAATA 60.025 45.455 0.00 0.00 0.00 1.40
3955 5608 2.618241 GTGTGACACTGGCATCAAAGAA 59.382 45.455 8.76 0.00 0.00 2.52
3956 5609 2.880268 TGTGACACTGGCATCAAAGAAG 59.120 45.455 7.20 0.00 0.00 2.85
3957 5610 3.141398 GTGACACTGGCATCAAAGAAGA 58.859 45.455 0.00 0.00 0.00 2.87
3981 5634 1.382522 GCAGAGGAAATCCAATCGCA 58.617 50.000 1.67 0.00 38.89 5.10
3982 5635 1.332997 GCAGAGGAAATCCAATCGCAG 59.667 52.381 1.67 0.00 38.89 5.18
3983 5636 2.910199 CAGAGGAAATCCAATCGCAGA 58.090 47.619 1.67 0.00 39.18 4.26
3984 5637 2.871022 CAGAGGAAATCCAATCGCAGAG 59.129 50.000 1.67 0.00 38.35 3.35
3987 5645 2.158842 AGGAAATCCAATCGCAGAGGAG 60.159 50.000 1.67 0.00 38.35 3.69
3998 5656 5.543507 ATCGCAGAGGAGTAGAATGAATT 57.456 39.130 0.00 0.00 43.63 2.17
4025 5698 5.447778 AGATCCCACACAAGATTTCAGAT 57.552 39.130 0.00 0.00 0.00 2.90
4026 5699 6.566079 AGATCCCACACAAGATTTCAGATA 57.434 37.500 0.00 0.00 0.00 1.98
4210 5890 7.379529 CCAGACAAAAATAAACACAGTAGCTTG 59.620 37.037 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.021894 CCTCTCTATTCCCCACATAAGTCG 60.022 50.000 0.00 0.00 0.00 4.18
463 488 9.624697 CGAAATCTGGAAACAATTCTGAATTTA 57.375 29.630 12.74 0.00 42.06 1.40
625 654 8.621286 TCTGTTTTTCCTTGTCAGTTTTATCTC 58.379 33.333 0.00 0.00 0.00 2.75
682 715 6.377146 GCTTGTATTTTTATGAAGACTCCCCA 59.623 38.462 0.00 0.00 0.00 4.96
683 716 6.377146 TGCTTGTATTTTTATGAAGACTCCCC 59.623 38.462 0.00 0.00 0.00 4.81
729 762 3.157087 CTCCCACTTATTTGCTTGGTGT 58.843 45.455 0.00 0.00 0.00 4.16
738 771 4.202409 GCATAGCTCCTCTCCCACTTATTT 60.202 45.833 0.00 0.00 0.00 1.40
756 789 2.032894 CGGATAGCAACCAAACGCATAG 60.033 50.000 0.00 0.00 0.00 2.23
793 826 7.047891 AGCTTGTGAAAACGATGATTCCTATA 58.952 34.615 0.00 0.00 0.00 1.31
844 877 1.003331 CGTTTTAACAACTGCGGCTCA 60.003 47.619 0.00 0.00 0.00 4.26
845 878 1.670326 CGTTTTAACAACTGCGGCTC 58.330 50.000 0.00 0.00 0.00 4.70
846 879 0.317519 GCGTTTTAACAACTGCGGCT 60.318 50.000 0.00 0.00 0.00 5.52
1214 1292 2.125912 CTCTTGTACGGCAGCGCT 60.126 61.111 2.64 2.64 0.00 5.92
1241 1319 2.032681 GCGGTCTTGACCCAGCTT 59.967 61.111 13.53 0.00 0.00 3.74
1294 1372 2.356313 CATCGAATCGAGGGGGCG 60.356 66.667 12.00 0.00 39.91 6.13
1529 1626 5.011090 TCCACTATCAACACATAGAGCAC 57.989 43.478 0.00 0.00 31.62 4.40
1536 1633 6.660521 ACACAATCAATCCACTATCAACACAT 59.339 34.615 0.00 0.00 0.00 3.21
1777 1891 6.842807 AGAAGAAAGATTAATGGCATTGGGAT 59.157 34.615 22.57 13.04 0.00 3.85
1779 1893 6.278363 CAGAAGAAAGATTAATGGCATTGGG 58.722 40.000 22.57 0.00 0.00 4.12
1804 1918 4.207224 CGTCACAATTCACCGAAGCTATAG 59.793 45.833 0.00 0.00 0.00 1.31
1826 1940 3.441163 TGCGTACTAAACTGATAAGGCG 58.559 45.455 0.00 0.00 0.00 5.52
1942 2057 3.982516 AGCCTCATCTGAAGTAGTACCA 58.017 45.455 0.00 0.00 0.00 3.25
1971 2086 7.255381 GCCAACAGATCAGCATCTAAATACATT 60.255 37.037 0.00 0.00 37.25 2.71
1972 2087 6.206243 GCCAACAGATCAGCATCTAAATACAT 59.794 38.462 0.00 0.00 37.25 2.29
1987 2136 3.406764 AGAACAGAACAGCCAACAGATC 58.593 45.455 0.00 0.00 0.00 2.75
2006 2155 5.726308 TCTCTAAAATTCCTGTCCCATGAGA 59.274 40.000 0.00 0.00 0.00 3.27
2010 2159 6.608808 CCATTTCTCTAAAATTCCTGTCCCAT 59.391 38.462 0.00 0.00 0.00 4.00
2044 2193 7.711339 GCTTAATCACAGGCATAACTAAGTAGT 59.289 37.037 0.00 0.00 38.39 2.73
2267 2416 4.870363 ACACACAAAATGCATAGGTGTTC 58.130 39.130 21.42 0.00 40.44 3.18
2302 2451 5.347620 ACATTATCATGCTGGCAAATTGT 57.652 34.783 0.00 0.00 33.05 2.71
2379 2532 9.841880 GTTGGGTTGATCTAATTTCTCTTTAAC 57.158 33.333 0.00 0.00 0.00 2.01
2586 2742 9.841880 CATCATTATAGATTTGCTTCAGAATGG 57.158 33.333 0.00 0.00 36.16 3.16
2668 2824 2.677836 TCATAAATGACTTGCTCGGCAC 59.322 45.455 0.00 0.00 38.71 5.01
2670 2826 2.939103 ACTCATAAATGACTTGCTCGGC 59.061 45.455 0.00 0.00 32.50 5.54
2671 2827 3.935203 ACACTCATAAATGACTTGCTCGG 59.065 43.478 0.00 0.00 32.50 4.63
2673 2829 4.154737 TGCACACTCATAAATGACTTGCTC 59.845 41.667 13.06 2.25 34.36 4.26
2674 2830 4.074259 TGCACACTCATAAATGACTTGCT 58.926 39.130 13.06 0.00 34.36 3.91
2675 2831 4.424061 TGCACACTCATAAATGACTTGC 57.576 40.909 8.01 8.01 34.08 4.01
2676 2832 7.878477 AAAATGCACACTCATAAATGACTTG 57.122 32.000 0.00 0.00 32.50 3.16
2677 2833 8.796475 ACTAAAATGCACACTCATAAATGACTT 58.204 29.630 0.00 0.00 32.50 3.01
2680 2836 8.565896 AGACTAAAATGCACACTCATAAATGA 57.434 30.769 0.00 0.00 35.16 2.57
2740 2896 5.567138 ACATAGATGCAAGTTTAGTTGGC 57.433 39.130 0.00 0.00 0.00 4.52
2806 3082 5.598769 AGAGTGAATATAAACTGCCGTACC 58.401 41.667 0.00 0.00 0.00 3.34
2830 3109 2.995258 GGCCATACAACAAATGCAACAG 59.005 45.455 0.00 0.00 0.00 3.16
2831 3110 2.632028 AGGCCATACAACAAATGCAACA 59.368 40.909 5.01 0.00 0.00 3.33
2881 3160 7.192676 CGGAAATGCTTTACGTATGAAAAAG 57.807 36.000 0.00 0.00 41.94 2.27
2951 3231 7.878477 AGCAAAACATTTGTTGTATGAGATG 57.122 32.000 4.90 0.00 37.68 2.90
3219 3499 3.821033 ACTGTAACTGACAAAATCTGGGC 59.179 43.478 0.00 0.00 37.70 5.36
3265 3545 4.260375 GCCGAAGAGCAACATGTACTATTG 60.260 45.833 12.02 2.22 0.00 1.90
3266 3546 3.871594 GCCGAAGAGCAACATGTACTATT 59.128 43.478 0.00 3.39 0.00 1.73
3286 3566 4.372656 AGCAAAGTATACGATCTTCAGCC 58.627 43.478 0.00 0.00 0.00 4.85
3350 3630 2.698855 TGAATGCTGAACTAGAGGCC 57.301 50.000 0.00 0.00 0.00 5.19
3380 3660 7.759886 TGTGGTCAACATTTAAATTCGAAAACA 59.240 29.630 0.00 1.83 32.36 2.83
3459 3743 7.950684 ACCTTCATACTACAGGAATCTAGCATA 59.049 37.037 0.00 0.00 0.00 3.14
3483 3767 9.541143 TGAAAAATCTCAAAAACCTATGAAACC 57.459 29.630 0.00 0.00 0.00 3.27
3492 3777 9.725019 ATAAAGGGATGAAAAATCTCAAAAACC 57.275 29.630 0.00 0.00 0.00 3.27
3500 3785 8.480501 CACCATTCATAAAGGGATGAAAAATCT 58.519 33.333 3.16 0.00 46.22 2.40
3511 3796 2.954318 CCTCTGCACCATTCATAAAGGG 59.046 50.000 0.00 0.00 42.15 3.95
3553 4037 7.990541 TGTAACATAATACGAACGCATTAGT 57.009 32.000 6.16 0.00 0.00 2.24
3580 4064 6.097696 AGGGCGCCAAATTATAGTAATTTGTT 59.902 34.615 30.85 8.06 42.84 2.83
3587 4075 4.159244 ACAAGGGCGCCAAATTATAGTA 57.841 40.909 30.85 0.00 0.00 1.82
3588 4076 3.012934 ACAAGGGCGCCAAATTATAGT 57.987 42.857 30.85 11.50 0.00 2.12
3589 4077 3.243401 GGAACAAGGGCGCCAAATTATAG 60.243 47.826 30.85 10.83 0.00 1.31
3595 4083 2.197324 AGGAACAAGGGCGCCAAA 59.803 55.556 30.85 0.00 0.00 3.28
3602 4090 1.541588 GCAGCTTAACAGGAACAAGGG 59.458 52.381 0.00 0.00 0.00 3.95
3613 4101 2.410053 CAGTCGACTTCTGCAGCTTAAC 59.590 50.000 17.26 2.37 0.00 2.01
3614 4102 2.296190 TCAGTCGACTTCTGCAGCTTAA 59.704 45.455 17.26 0.00 33.48 1.85
3615 4103 1.886542 TCAGTCGACTTCTGCAGCTTA 59.113 47.619 17.26 0.00 33.48 3.09
3624 4119 8.429299 GTTTTCTTTATCTCTTCAGTCGACTTC 58.571 37.037 17.26 0.00 0.00 3.01
3683 4178 4.346418 ACATTGTTTGAAATAGGTGGCCAA 59.654 37.500 7.24 0.00 0.00 4.52
3710 4205 6.847956 TCATGCCAAAATTTGAGAACTTTG 57.152 33.333 7.37 0.00 0.00 2.77
3740 4235 3.201266 TGTACAGGTTTGAGGGACACTTT 59.799 43.478 0.00 0.00 0.00 2.66
3741 4236 2.775384 TGTACAGGTTTGAGGGACACTT 59.225 45.455 0.00 0.00 0.00 3.16
3763 4258 0.251341 GAGGATGTTGCCAAGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
3862 4358 3.758023 TGTGTATTTGCTTGATGTGGAGG 59.242 43.478 0.00 0.00 0.00 4.30
3880 4376 0.827507 GGATGTTGCCAAGGGTGTGT 60.828 55.000 0.00 0.00 0.00 3.72
3898 5548 3.190079 CACGATTGTATCACACCTGAGG 58.810 50.000 0.00 0.00 0.00 3.86
3902 5552 3.513912 TCTTCCACGATTGTATCACACCT 59.486 43.478 0.00 0.00 0.00 4.00
3903 5553 3.617263 GTCTTCCACGATTGTATCACACC 59.383 47.826 0.00 0.00 0.00 4.16
3955 5608 2.555664 TGGATTTCCTCTGCCTCTTCT 58.444 47.619 0.00 0.00 36.82 2.85
3956 5609 3.356529 TTGGATTTCCTCTGCCTCTTC 57.643 47.619 0.00 0.00 36.82 2.87
3957 5610 3.683847 CGATTGGATTTCCTCTGCCTCTT 60.684 47.826 0.00 0.00 36.82 2.85
3981 5634 7.487822 TCTTGACAATTCATTCTACTCCTCT 57.512 36.000 0.00 0.00 0.00 3.69
3982 5635 7.440856 GGATCTTGACAATTCATTCTACTCCTC 59.559 40.741 0.00 0.00 0.00 3.71
3983 5636 7.278875 GGATCTTGACAATTCATTCTACTCCT 58.721 38.462 0.00 0.00 0.00 3.69
3984 5637 6.484977 GGGATCTTGACAATTCATTCTACTCC 59.515 42.308 0.00 0.00 0.00 3.85
3987 5645 6.599244 TGTGGGATCTTGACAATTCATTCTAC 59.401 38.462 0.00 0.00 0.00 2.59
3998 5656 4.371624 AATCTTGTGTGGGATCTTGACA 57.628 40.909 0.00 0.00 0.00 3.58
4025 5698 3.382278 TGGGTTGACCATATACCGGTTA 58.618 45.455 15.04 5.61 46.80 2.85
4026 5699 2.198336 TGGGTTGACCATATACCGGTT 58.802 47.619 15.04 3.05 46.80 4.44
4210 5890 1.903183 ACCCTTGAGAGTTAGACCTGC 59.097 52.381 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.