Multiple sequence alignment - TraesCS7D01G313000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G313000 chr7D 100.000 4931 0 0 1 4931 396451950 396447020 0.000000e+00 9106.0
1 TraesCS7D01G313000 chr7D 90.217 368 26 6 4372 4737 593991324 593991683 5.780000e-129 472.0
2 TraesCS7D01G313000 chr7D 100.000 29 0 0 4739 4767 593991700 593991728 2.000000e-03 54.7
3 TraesCS7D01G313000 chr7B 94.282 4267 150 28 669 4876 399882828 399878597 0.000000e+00 6442.0
4 TraesCS7D01G313000 chr7B 89.967 299 17 8 11 309 399883589 399883304 1.680000e-99 374.0
5 TraesCS7D01G313000 chr7B 78.595 299 48 11 1 289 657537274 657536982 3.030000e-42 183.0
6 TraesCS7D01G313000 chr7B 96.000 50 1 1 4877 4925 399878281 399878232 4.090000e-11 80.5
7 TraesCS7D01G313000 chr7A 91.924 4086 186 61 726 4737 450413895 450409880 0.000000e+00 5585.0
8 TraesCS7D01G313000 chr7A 89.796 98 10 0 4769 4866 450400848 450400751 5.180000e-25 126.0
9 TraesCS7D01G313000 chr4B 96.429 336 11 1 309 643 94787969 94788304 2.010000e-153 553.0
10 TraesCS7D01G313000 chr4B 77.636 313 58 12 1 306 414267871 414268178 3.920000e-41 180.0
11 TraesCS7D01G313000 chr4B 77.186 263 50 6 1 255 34449452 34449192 1.430000e-30 145.0
12 TraesCS7D01G313000 chr3B 96.697 333 10 1 309 641 729911318 729911649 2.010000e-153 553.0
13 TraesCS7D01G313000 chr3B 95.294 340 14 2 309 646 806014977 806014638 5.620000e-149 538.0
14 TraesCS7D01G313000 chr3B 79.911 224 37 5 1 218 62306603 62306382 1.840000e-34 158.0
15 TraesCS7D01G313000 chr1D 96.131 336 12 1 309 643 421078563 421078228 9.330000e-152 547.0
16 TraesCS7D01G313000 chr3D 95.858 338 12 2 309 645 550246277 550245941 3.360000e-151 545.0
17 TraesCS7D01G313000 chr3D 95.821 335 13 1 309 642 39587286 39586952 1.560000e-149 540.0
18 TraesCS7D01G313000 chr3D 100.000 28 0 0 4876 4903 390775303 390775276 9.000000e-03 52.8
19 TraesCS7D01G313000 chr3A 96.096 333 12 1 309 640 66515240 66515572 4.340000e-150 542.0
20 TraesCS7D01G313000 chr4D 95.821 335 13 1 309 642 33289090 33289424 1.560000e-149 540.0
21 TraesCS7D01G313000 chr2A 95.833 336 11 3 309 643 752309743 752309410 1.560000e-149 540.0
22 TraesCS7D01G313000 chr2B 81.696 224 34 3 1 218 766184575 766184353 3.920000e-41 180.0
23 TraesCS7D01G313000 chr2B 77.132 258 47 8 1 249 635690675 635690929 6.660000e-29 139.0
24 TraesCS7D01G313000 chr5B 83.158 190 22 4 1 182 501420351 501420538 1.100000e-36 165.0
25 TraesCS7D01G313000 chr5B 80.617 227 31 8 1 218 222422367 222422145 3.950000e-36 163.0
26 TraesCS7D01G313000 chr5A 96.970 33 0 1 4875 4906 367522144 367522112 2.000000e-03 54.7
27 TraesCS7D01G313000 chr1A 96.970 33 0 1 4875 4906 442451193 442451225 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G313000 chr7D 396447020 396451950 4930 True 9106.000000 9106 100.000000 1 4931 1 chr7D.!!$R1 4930
1 TraesCS7D01G313000 chr7B 399878232 399883589 5357 True 2298.833333 6442 93.416333 11 4925 3 chr7B.!!$R2 4914
2 TraesCS7D01G313000 chr7A 450409880 450413895 4015 True 5585.000000 5585 91.924000 726 4737 1 chr7A.!!$R2 4011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 498 0.107017 CGCCCCTTCATCAACTGGAT 60.107 55.0 0.0 0.0 36.39 3.41 F
1240 1571 0.034863 GAGGGTCTCTGTCGTCTCCT 60.035 60.0 0.0 0.0 0.00 3.69 F
2402 2780 0.535102 CTGCGGGTCTCACTTTGGTT 60.535 55.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 2087 0.394938 TAGCCGTGCAAGAGGACAAA 59.605 50.0 0.00 0.0 35.57 2.83 R
3166 3544 0.469331 AGACCCGAGTTGACCAGTCA 60.469 55.0 0.00 0.0 37.91 3.41 R
4139 4530 0.038159 CACCGGACCAGACTGAACTC 60.038 60.0 9.46 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.043852 ACTGCTCCCGATCCGTCT 60.044 61.111 0.00 0.00 0.00 4.18
36 37 2.833582 GCTCCCGATCCGTCTCCA 60.834 66.667 0.00 0.00 0.00 3.86
40 41 0.537600 TCCCGATCCGTCTCCATCTC 60.538 60.000 0.00 0.00 0.00 2.75
110 111 2.096417 CGTTGTTAAGAAGAAGGCCACG 60.096 50.000 5.01 0.00 0.00 4.94
160 161 2.588877 CCTTGCGTGGCCTATCGG 60.589 66.667 3.32 0.00 0.00 4.18
201 202 2.802816 CCCTACTTGCTCGTTCATATGC 59.197 50.000 0.00 0.00 0.00 3.14
203 204 4.262036 CCCTACTTGCTCGTTCATATGCTA 60.262 45.833 0.00 0.00 0.00 3.49
204 205 4.920340 CCTACTTGCTCGTTCATATGCTAG 59.080 45.833 0.00 0.00 35.19 3.42
205 206 4.392921 ACTTGCTCGTTCATATGCTAGT 57.607 40.909 0.00 0.00 36.87 2.57
206 207 4.363999 ACTTGCTCGTTCATATGCTAGTC 58.636 43.478 0.00 0.00 37.01 2.59
207 208 3.000082 TGCTCGTTCATATGCTAGTCG 58.000 47.619 0.00 0.00 0.00 4.18
208 209 2.357952 TGCTCGTTCATATGCTAGTCGT 59.642 45.455 0.00 0.00 0.00 4.34
212 213 6.093633 TGCTCGTTCATATGCTAGTCGTATAT 59.906 38.462 0.00 0.00 32.00 0.86
213 214 6.412362 GCTCGTTCATATGCTAGTCGTATATG 59.588 42.308 6.45 6.45 44.96 1.78
214 215 6.255950 TCGTTCATATGCTAGTCGTATATGC 58.744 40.000 7.58 0.00 43.94 3.14
215 216 6.093633 TCGTTCATATGCTAGTCGTATATGCT 59.906 38.462 7.58 0.00 43.94 3.79
216 217 6.195428 CGTTCATATGCTAGTCGTATATGCTG 59.805 42.308 7.58 0.00 43.94 4.41
217 218 5.582550 TCATATGCTAGTCGTATATGCTGC 58.417 41.667 7.58 0.00 43.94 5.25
218 219 2.724977 TGCTAGTCGTATATGCTGCC 57.275 50.000 0.00 0.00 0.00 4.85
219 220 2.239400 TGCTAGTCGTATATGCTGCCT 58.761 47.619 0.00 0.00 0.00 4.75
220 221 2.628178 TGCTAGTCGTATATGCTGCCTT 59.372 45.455 0.00 0.00 0.00 4.35
221 222 2.989840 GCTAGTCGTATATGCTGCCTTG 59.010 50.000 0.00 0.00 0.00 3.61
222 223 3.305403 GCTAGTCGTATATGCTGCCTTGA 60.305 47.826 0.00 0.00 0.00 3.02
223 224 4.619394 GCTAGTCGTATATGCTGCCTTGAT 60.619 45.833 0.00 0.00 0.00 2.57
224 225 5.393135 GCTAGTCGTATATGCTGCCTTGATA 60.393 44.000 0.00 0.00 0.00 2.15
225 226 5.065704 AGTCGTATATGCTGCCTTGATAG 57.934 43.478 0.00 0.00 0.00 2.08
226 227 4.767409 AGTCGTATATGCTGCCTTGATAGA 59.233 41.667 0.00 0.00 0.00 1.98
227 228 5.420421 AGTCGTATATGCTGCCTTGATAGAT 59.580 40.000 0.00 0.00 0.00 1.98
228 229 5.518128 GTCGTATATGCTGCCTTGATAGATG 59.482 44.000 0.00 0.00 0.00 2.90
229 230 5.185828 TCGTATATGCTGCCTTGATAGATGT 59.814 40.000 0.00 0.00 0.00 3.06
230 231 5.871524 CGTATATGCTGCCTTGATAGATGTT 59.128 40.000 0.00 0.00 0.00 2.71
231 232 6.035435 CGTATATGCTGCCTTGATAGATGTTC 59.965 42.308 0.00 0.00 0.00 3.18
270 271 4.995124 ACGAGCTCACGTGTTTAGATATT 58.005 39.130 16.51 0.00 44.84 1.28
309 310 7.278646 GCATACTCTGAATGTCATGTTTACTGA 59.721 37.037 0.00 0.00 0.00 3.41
310 311 8.598924 CATACTCTGAATGTCATGTTTACTGAC 58.401 37.037 0.00 0.00 42.68 3.51
312 313 6.870965 ACTCTGAATGTCATGTTTACTGACTC 59.129 38.462 5.19 0.00 42.78 3.36
313 314 5.863935 TCTGAATGTCATGTTTACTGACTCG 59.136 40.000 5.19 0.00 42.78 4.18
315 316 5.405269 TGAATGTCATGTTTACTGACTCGTG 59.595 40.000 5.19 0.00 42.78 4.35
316 317 3.649073 TGTCATGTTTACTGACTCGTGG 58.351 45.455 5.19 0.00 42.78 4.94
317 318 2.412089 GTCATGTTTACTGACTCGTGGC 59.588 50.000 0.00 0.00 39.90 5.01
318 319 2.036604 TCATGTTTACTGACTCGTGGCA 59.963 45.455 0.00 0.00 0.00 4.92
319 320 2.148916 TGTTTACTGACTCGTGGCAG 57.851 50.000 18.56 18.56 38.10 4.85
320 321 1.270094 TGTTTACTGACTCGTGGCAGG 60.270 52.381 23.37 6.74 36.47 4.85
322 323 0.317160 TTACTGACTCGTGGCAGGTG 59.683 55.000 23.37 7.39 36.47 4.00
323 324 1.532604 TACTGACTCGTGGCAGGTGG 61.533 60.000 23.37 0.47 36.47 4.61
324 325 4.314440 TGACTCGTGGCAGGTGGC 62.314 66.667 13.06 10.72 43.74 5.01
325 326 4.008933 GACTCGTGGCAGGTGGCT 62.009 66.667 13.06 0.00 44.01 4.75
326 327 4.320456 ACTCGTGGCAGGTGGCTG 62.320 66.667 13.06 0.00 44.01 4.85
352 353 4.910585 CCATACCCGGCAGGCGTC 62.911 72.222 16.17 0.00 40.58 5.19
368 369 3.059982 TCCTGGTTGAGGAGTGCG 58.940 61.111 0.00 0.00 46.96 5.34
369 370 2.743928 CCTGGTTGAGGAGTGCGC 60.744 66.667 0.00 0.00 46.33 6.09
374 375 4.373116 TTGAGGAGTGCGCCGGAC 62.373 66.667 5.05 0.00 0.00 4.79
376 377 4.803426 GAGGAGTGCGCCGGACTG 62.803 72.222 18.13 0.00 0.00 3.51
379 380 3.755628 GAGTGCGCCGGACTGGTA 61.756 66.667 18.13 0.00 41.21 3.25
380 381 3.701604 GAGTGCGCCGGACTGGTAG 62.702 68.421 18.13 0.00 41.21 3.18
381 382 4.814294 GTGCGCCGGACTGGTAGG 62.814 72.222 5.05 0.00 41.21 3.18
383 384 4.814294 GCGCCGGACTGGTAGGTG 62.814 72.222 5.05 4.62 41.21 4.00
384 385 4.814294 CGCCGGACTGGTAGGTGC 62.814 72.222 5.05 0.00 41.21 5.01
385 386 4.468689 GCCGGACTGGTAGGTGCC 62.469 72.222 5.05 0.00 41.21 5.01
386 387 3.782443 CCGGACTGGTAGGTGCCC 61.782 72.222 0.00 0.00 0.00 5.36
388 389 2.609610 GGACTGGTAGGTGCCCCA 60.610 66.667 0.00 0.00 0.00 4.96
390 391 0.693092 GGACTGGTAGGTGCCCCATA 60.693 60.000 0.00 0.00 0.00 2.74
391 392 0.468648 GACTGGTAGGTGCCCCATAC 59.531 60.000 0.00 0.00 0.00 2.39
392 393 0.986550 ACTGGTAGGTGCCCCATACC 60.987 60.000 7.24 7.24 36.14 2.73
394 395 0.986019 TGGTAGGTGCCCCATACCAG 60.986 60.000 11.63 0.00 38.50 4.00
395 396 1.705997 GGTAGGTGCCCCATACCAGG 61.706 65.000 8.87 0.00 40.74 4.45
401 402 4.569180 CCCCATACCAGGCAGGCG 62.569 72.222 0.00 0.00 43.14 5.52
403 404 2.203070 CCATACCAGGCAGGCGTC 60.203 66.667 0.00 0.00 43.14 5.19
405 406 2.365635 ATACCAGGCAGGCGTCCT 60.366 61.111 0.00 0.00 43.14 3.85
419 420 4.232905 TCCTGGTTGGGACCTCAG 57.767 61.111 0.00 0.00 46.66 3.35
420 421 1.538876 TCCTGGTTGGGACCTCAGG 60.539 63.158 15.03 15.03 46.66 3.86
421 422 1.847968 CCTGGTTGGGACCTCAGGT 60.848 63.158 0.00 0.00 46.66 4.00
436 437 5.404395 ACCTCAGGTCTTAGAAGTTTAGGT 58.596 41.667 0.00 0.00 0.00 3.08
437 438 5.845065 ACCTCAGGTCTTAGAAGTTTAGGTT 59.155 40.000 0.00 0.00 29.47 3.50
438 439 6.329460 ACCTCAGGTCTTAGAAGTTTAGGTTT 59.671 38.462 0.00 0.00 29.47 3.27
440 441 6.531021 TCAGGTCTTAGAAGTTTAGGTTTGG 58.469 40.000 0.00 0.00 0.00 3.28
441 442 5.181433 CAGGTCTTAGAAGTTTAGGTTTGGC 59.819 44.000 0.00 0.00 0.00 4.52
442 443 5.073280 AGGTCTTAGAAGTTTAGGTTTGGCT 59.927 40.000 0.00 0.00 0.00 4.75
444 445 4.760204 TCTTAGAAGTTTAGGTTTGGCTGC 59.240 41.667 0.00 0.00 0.00 5.25
446 447 1.877443 GAAGTTTAGGTTTGGCTGCGA 59.123 47.619 0.00 0.00 0.00 5.10
447 448 2.200373 AGTTTAGGTTTGGCTGCGAT 57.800 45.000 0.00 0.00 0.00 4.58
448 449 1.812571 AGTTTAGGTTTGGCTGCGATG 59.187 47.619 0.00 0.00 0.00 3.84
449 450 1.539827 GTTTAGGTTTGGCTGCGATGT 59.460 47.619 0.00 0.00 0.00 3.06
450 451 1.448985 TTAGGTTTGGCTGCGATGTC 58.551 50.000 0.00 0.00 0.00 3.06
451 452 0.613260 TAGGTTTGGCTGCGATGTCT 59.387 50.000 0.00 0.00 0.00 3.41
452 453 0.957395 AGGTTTGGCTGCGATGTCTG 60.957 55.000 0.00 0.00 0.00 3.51
453 454 1.237285 GGTTTGGCTGCGATGTCTGT 61.237 55.000 0.00 0.00 0.00 3.41
454 455 0.593128 GTTTGGCTGCGATGTCTGTT 59.407 50.000 0.00 0.00 0.00 3.16
455 456 1.001378 GTTTGGCTGCGATGTCTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
456 457 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
457 458 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
458 459 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
459 460 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
460 461 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
461 462 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
462 463 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
463 464 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
464 465 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
465 466 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
466 467 4.442706 CGATGTCTGTTTGGTATTAGGCT 58.557 43.478 0.00 0.00 0.00 4.58
467 468 4.508124 CGATGTCTGTTTGGTATTAGGCTC 59.492 45.833 0.00 0.00 0.00 4.70
468 469 4.901197 TGTCTGTTTGGTATTAGGCTCA 57.099 40.909 0.00 0.00 0.00 4.26
469 470 4.832248 TGTCTGTTTGGTATTAGGCTCAG 58.168 43.478 0.00 0.00 0.00 3.35
470 471 4.530553 TGTCTGTTTGGTATTAGGCTCAGA 59.469 41.667 0.00 0.00 0.00 3.27
471 472 4.870991 GTCTGTTTGGTATTAGGCTCAGAC 59.129 45.833 10.25 10.25 41.85 3.51
472 473 4.777896 TCTGTTTGGTATTAGGCTCAGACT 59.222 41.667 0.00 0.00 0.00 3.24
473 474 5.955959 TCTGTTTGGTATTAGGCTCAGACTA 59.044 40.000 0.00 0.00 0.00 2.59
474 475 6.611642 TCTGTTTGGTATTAGGCTCAGACTAT 59.388 38.462 0.00 0.00 0.00 2.12
475 476 6.817184 TGTTTGGTATTAGGCTCAGACTATC 58.183 40.000 0.00 0.00 0.00 2.08
476 477 6.382859 TGTTTGGTATTAGGCTCAGACTATCA 59.617 38.462 0.00 0.00 0.00 2.15
477 478 6.656632 TTGGTATTAGGCTCAGACTATCAG 57.343 41.667 0.00 0.00 0.00 2.90
478 479 4.524714 TGGTATTAGGCTCAGACTATCAGC 59.475 45.833 0.00 0.00 0.00 4.26
479 480 3.932545 ATTAGGCTCAGACTATCAGCG 57.067 47.619 0.00 0.00 33.66 5.18
480 481 0.955178 TAGGCTCAGACTATCAGCGC 59.045 55.000 0.00 0.00 33.66 5.92
481 482 1.300542 GGCTCAGACTATCAGCGCC 60.301 63.158 2.29 0.00 33.66 6.53
482 483 1.300542 GCTCAGACTATCAGCGCCC 60.301 63.158 2.29 0.00 0.00 6.13
483 484 1.365633 CTCAGACTATCAGCGCCCC 59.634 63.158 2.29 0.00 0.00 5.80
484 485 1.075970 TCAGACTATCAGCGCCCCT 60.076 57.895 2.29 0.00 0.00 4.79
485 486 0.687757 TCAGACTATCAGCGCCCCTT 60.688 55.000 2.29 0.00 0.00 3.95
486 487 0.249657 CAGACTATCAGCGCCCCTTC 60.250 60.000 2.29 0.00 0.00 3.46
487 488 0.687757 AGACTATCAGCGCCCCTTCA 60.688 55.000 2.29 0.00 0.00 3.02
488 489 0.394565 GACTATCAGCGCCCCTTCAT 59.605 55.000 2.29 0.00 0.00 2.57
489 490 0.394565 ACTATCAGCGCCCCTTCATC 59.605 55.000 2.29 0.00 0.00 2.92
490 491 0.394192 CTATCAGCGCCCCTTCATCA 59.606 55.000 2.29 0.00 0.00 3.07
491 492 0.836606 TATCAGCGCCCCTTCATCAA 59.163 50.000 2.29 0.00 0.00 2.57
492 493 0.749454 ATCAGCGCCCCTTCATCAAC 60.749 55.000 2.29 0.00 0.00 3.18
493 494 1.377725 CAGCGCCCCTTCATCAACT 60.378 57.895 2.29 0.00 0.00 3.16
494 495 1.377725 AGCGCCCCTTCATCAACTG 60.378 57.895 2.29 0.00 0.00 3.16
495 496 2.409870 GCGCCCCTTCATCAACTGG 61.410 63.158 0.00 0.00 0.00 4.00
496 497 1.299648 CGCCCCTTCATCAACTGGA 59.700 57.895 0.00 0.00 0.00 3.86
497 498 0.107017 CGCCCCTTCATCAACTGGAT 60.107 55.000 0.00 0.00 36.39 3.41
498 499 1.140852 CGCCCCTTCATCAACTGGATA 59.859 52.381 0.00 0.00 33.95 2.59
499 500 2.808202 CGCCCCTTCATCAACTGGATAG 60.808 54.545 0.00 0.00 33.95 2.08
500 501 2.487986 GCCCCTTCATCAACTGGATAGG 60.488 54.545 0.00 0.00 33.95 2.57
501 502 2.780010 CCCCTTCATCAACTGGATAGGT 59.220 50.000 0.00 0.00 32.05 3.08
502 503 3.973973 CCCCTTCATCAACTGGATAGGTA 59.026 47.826 0.00 0.00 32.05 3.08
503 504 4.599241 CCCCTTCATCAACTGGATAGGTAT 59.401 45.833 0.00 0.00 32.05 2.73
504 505 5.785423 CCCCTTCATCAACTGGATAGGTATA 59.215 44.000 0.00 0.00 32.05 1.47
505 506 6.070538 CCCCTTCATCAACTGGATAGGTATAG 60.071 46.154 0.00 0.00 32.05 1.31
506 507 6.402222 CCTTCATCAACTGGATAGGTATAGC 58.598 44.000 0.00 0.00 33.95 2.97
507 508 5.644977 TCATCAACTGGATAGGTATAGCG 57.355 43.478 0.00 0.00 33.95 4.26
508 509 5.321927 TCATCAACTGGATAGGTATAGCGA 58.678 41.667 0.00 0.00 33.95 4.93
509 510 5.183331 TCATCAACTGGATAGGTATAGCGAC 59.817 44.000 0.00 0.00 33.95 5.19
510 511 4.466827 TCAACTGGATAGGTATAGCGACA 58.533 43.478 0.00 0.00 0.00 4.35
511 512 4.519350 TCAACTGGATAGGTATAGCGACAG 59.481 45.833 13.02 13.02 0.00 3.51
512 513 4.101645 ACTGGATAGGTATAGCGACAGT 57.898 45.455 13.93 13.93 33.51 3.55
513 514 4.471548 ACTGGATAGGTATAGCGACAGTT 58.528 43.478 13.93 4.22 34.59 3.16
514 515 4.278669 ACTGGATAGGTATAGCGACAGTTG 59.721 45.833 13.93 0.00 34.59 3.16
515 516 4.212716 TGGATAGGTATAGCGACAGTTGT 58.787 43.478 0.00 0.00 0.00 3.32
516 517 4.647853 TGGATAGGTATAGCGACAGTTGTT 59.352 41.667 0.00 0.00 0.00 2.83
517 518 4.982916 GGATAGGTATAGCGACAGTTGTTG 59.017 45.833 0.00 0.00 0.00 3.33
518 519 5.221185 GGATAGGTATAGCGACAGTTGTTGA 60.221 44.000 3.68 0.00 0.00 3.18
519 520 4.737855 AGGTATAGCGACAGTTGTTGAT 57.262 40.909 3.68 0.00 32.13 2.57
520 521 5.086104 AGGTATAGCGACAGTTGTTGATT 57.914 39.130 3.68 0.00 29.75 2.57
521 522 6.216801 AGGTATAGCGACAGTTGTTGATTA 57.783 37.500 3.68 0.00 29.75 1.75
522 523 6.273825 AGGTATAGCGACAGTTGTTGATTAG 58.726 40.000 3.68 0.00 29.75 1.73
523 524 6.096423 AGGTATAGCGACAGTTGTTGATTAGA 59.904 38.462 3.68 0.00 29.75 2.10
524 525 6.198591 GGTATAGCGACAGTTGTTGATTAGAC 59.801 42.308 3.68 3.22 29.75 2.59
525 526 2.987149 AGCGACAGTTGTTGATTAGACG 59.013 45.455 3.68 0.00 0.00 4.18
526 527 2.092211 GCGACAGTTGTTGATTAGACGG 59.908 50.000 3.68 0.00 0.00 4.79
527 528 3.314553 CGACAGTTGTTGATTAGACGGT 58.685 45.455 0.00 0.00 0.00 4.83
528 529 3.121279 CGACAGTTGTTGATTAGACGGTG 59.879 47.826 0.00 0.00 0.00 4.94
529 530 3.399330 ACAGTTGTTGATTAGACGGTGG 58.601 45.455 0.00 0.00 0.00 4.61
530 531 2.159627 CAGTTGTTGATTAGACGGTGGC 59.840 50.000 0.00 0.00 0.00 5.01
531 532 2.038557 AGTTGTTGATTAGACGGTGGCT 59.961 45.455 0.00 0.00 0.00 4.75
532 533 2.812011 GTTGTTGATTAGACGGTGGCTT 59.188 45.455 0.00 0.00 0.00 4.35
533 534 2.695359 TGTTGATTAGACGGTGGCTTC 58.305 47.619 0.00 0.00 0.00 3.86
534 535 2.037902 TGTTGATTAGACGGTGGCTTCA 59.962 45.455 0.00 0.00 0.00 3.02
535 536 2.672961 TGATTAGACGGTGGCTTCAG 57.327 50.000 0.00 0.00 0.00 3.02
536 537 1.899814 TGATTAGACGGTGGCTTCAGT 59.100 47.619 0.00 0.00 0.00 3.41
537 538 2.094182 TGATTAGACGGTGGCTTCAGTC 60.094 50.000 0.00 5.74 33.90 3.51
538 539 1.629043 TTAGACGGTGGCTTCAGTCT 58.371 50.000 16.03 16.03 43.08 3.24
539 540 1.629043 TAGACGGTGGCTTCAGTCTT 58.371 50.000 16.65 6.26 41.47 3.01
540 541 1.629043 AGACGGTGGCTTCAGTCTTA 58.371 50.000 9.22 0.00 39.12 2.10
541 542 1.272769 AGACGGTGGCTTCAGTCTTAC 59.727 52.381 9.22 0.00 39.12 2.34
542 543 1.272769 GACGGTGGCTTCAGTCTTACT 59.727 52.381 0.00 0.00 31.74 2.24
544 545 1.000955 CGGTGGCTTCAGTCTTACTGT 59.999 52.381 6.93 0.00 46.03 3.55
545 546 2.548067 CGGTGGCTTCAGTCTTACTGTT 60.548 50.000 6.93 0.00 46.03 3.16
546 547 2.808543 GGTGGCTTCAGTCTTACTGTTG 59.191 50.000 6.93 3.17 46.03 3.33
547 548 3.467803 GTGGCTTCAGTCTTACTGTTGT 58.532 45.455 6.93 0.00 46.03 3.32
548 549 4.502604 GGTGGCTTCAGTCTTACTGTTGTA 60.503 45.833 6.93 0.00 46.03 2.41
549 550 5.238583 GTGGCTTCAGTCTTACTGTTGTAT 58.761 41.667 6.93 0.00 46.03 2.29
550 551 5.120830 GTGGCTTCAGTCTTACTGTTGTATG 59.879 44.000 6.93 0.00 46.03 2.39
551 552 5.011635 TGGCTTCAGTCTTACTGTTGTATGA 59.988 40.000 6.93 0.00 46.03 2.15
552 553 5.348997 GGCTTCAGTCTTACTGTTGTATGAC 59.651 44.000 6.93 11.70 46.03 3.06
561 562 8.709646 GTCTTACTGTTGTATGACTTTGTAAGG 58.290 37.037 0.00 0.00 44.06 2.69
562 563 8.426489 TCTTACTGTTGTATGACTTTGTAAGGT 58.574 33.333 0.00 0.00 37.36 3.50
563 564 8.597662 TTACTGTTGTATGACTTTGTAAGGTC 57.402 34.615 0.44 0.44 0.00 3.85
564 565 6.827727 ACTGTTGTATGACTTTGTAAGGTCT 58.172 36.000 8.11 0.00 34.01 3.85
565 566 7.280356 ACTGTTGTATGACTTTGTAAGGTCTT 58.720 34.615 8.11 4.91 34.01 3.01
566 567 8.426489 ACTGTTGTATGACTTTGTAAGGTCTTA 58.574 33.333 8.11 4.09 34.01 2.10
567 568 9.436957 CTGTTGTATGACTTTGTAAGGTCTTAT 57.563 33.333 8.11 0.00 34.01 1.73
568 569 9.214957 TGTTGTATGACTTTGTAAGGTCTTATG 57.785 33.333 8.11 0.00 34.01 1.90
569 570 9.431887 GTTGTATGACTTTGTAAGGTCTTATGA 57.568 33.333 8.11 0.00 34.01 2.15
570 571 9.653287 TTGTATGACTTTGTAAGGTCTTATGAG 57.347 33.333 8.11 0.00 34.01 2.90
571 572 9.031537 TGTATGACTTTGTAAGGTCTTATGAGA 57.968 33.333 8.11 0.00 34.01 3.27
572 573 9.871238 GTATGACTTTGTAAGGTCTTATGAGAA 57.129 33.333 8.11 0.00 32.66 2.87
591 592 6.966021 TGAGAATAATTAATAAAGTGGCCGC 58.034 36.000 8.71 8.71 0.00 6.53
592 593 6.544197 TGAGAATAATTAATAAAGTGGCCGCA 59.456 34.615 20.59 0.00 0.00 5.69
593 594 7.230510 TGAGAATAATTAATAAAGTGGCCGCAT 59.769 33.333 20.59 2.72 0.00 4.73
594 595 7.370383 AGAATAATTAATAAAGTGGCCGCATG 58.630 34.615 20.59 0.00 0.00 4.06
595 596 2.861462 TTAATAAAGTGGCCGCATGC 57.139 45.000 20.59 7.91 40.16 4.06
596 597 1.756430 TAATAAAGTGGCCGCATGCA 58.244 45.000 20.59 0.22 43.89 3.96
597 598 1.113788 AATAAAGTGGCCGCATGCAT 58.886 45.000 20.59 0.00 43.89 3.96
598 599 0.670162 ATAAAGTGGCCGCATGCATC 59.330 50.000 20.59 8.10 43.89 3.91
599 600 1.713937 TAAAGTGGCCGCATGCATCG 61.714 55.000 20.59 5.23 43.89 3.84
604 605 3.720193 GCCGCATGCATCGCCTAG 61.720 66.667 19.57 0.00 40.77 3.02
605 606 2.029518 CCGCATGCATCGCCTAGA 59.970 61.111 19.57 0.00 0.00 2.43
606 607 1.375140 CCGCATGCATCGCCTAGAT 60.375 57.895 19.57 0.00 41.01 1.98
618 619 2.659800 CCTAGATGTAGAGGCCGGG 58.340 63.158 2.18 0.00 0.00 5.73
619 620 0.900647 CCTAGATGTAGAGGCCGGGG 60.901 65.000 2.18 0.00 0.00 5.73
620 621 0.178958 CTAGATGTAGAGGCCGGGGT 60.179 60.000 2.18 0.00 0.00 4.95
621 622 0.178970 TAGATGTAGAGGCCGGGGTC 60.179 60.000 2.18 0.00 0.00 4.46
622 623 1.760875 GATGTAGAGGCCGGGGTCA 60.761 63.158 2.18 0.00 0.00 4.02
623 624 1.074471 ATGTAGAGGCCGGGGTCAT 60.074 57.895 2.18 0.00 0.00 3.06
624 625 1.122019 ATGTAGAGGCCGGGGTCATC 61.122 60.000 2.18 0.00 0.00 2.92
625 626 2.122989 TAGAGGCCGGGGTCATCC 60.123 66.667 2.18 0.00 0.00 3.51
626 627 2.711899 TAGAGGCCGGGGTCATCCT 61.712 63.158 2.18 0.00 35.33 3.24
627 628 2.658321 TAGAGGCCGGGGTCATCCTC 62.658 65.000 13.92 13.92 44.09 3.71
630 631 3.090532 GCCGGGGTCATCCTCCTT 61.091 66.667 2.18 0.00 35.33 3.36
631 632 2.680370 GCCGGGGTCATCCTCCTTT 61.680 63.158 2.18 0.00 35.33 3.11
632 633 1.999346 CCGGGGTCATCCTCCTTTT 59.001 57.895 0.00 0.00 35.33 2.27
633 634 0.107165 CCGGGGTCATCCTCCTTTTC 60.107 60.000 0.00 0.00 35.33 2.29
634 635 0.912486 CGGGGTCATCCTCCTTTTCT 59.088 55.000 0.00 0.00 35.33 2.52
635 636 2.116238 CGGGGTCATCCTCCTTTTCTA 58.884 52.381 0.00 0.00 35.33 2.10
636 637 2.504175 CGGGGTCATCCTCCTTTTCTAA 59.496 50.000 0.00 0.00 35.33 2.10
637 638 3.054655 CGGGGTCATCCTCCTTTTCTAAA 60.055 47.826 0.00 0.00 35.33 1.85
638 639 4.566907 CGGGGTCATCCTCCTTTTCTAAAA 60.567 45.833 0.00 0.00 35.33 1.52
639 640 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
729 1047 0.895530 TCCATCTTCAGGGTGTCGTC 59.104 55.000 0.00 0.00 0.00 4.20
754 1072 2.263077 CTCACTTGACACAGATACGGC 58.737 52.381 0.00 0.00 0.00 5.68
812 1130 1.287425 GACTCGCAAATCCCCGTAAG 58.713 55.000 0.00 0.00 0.00 2.34
838 1157 2.228103 CTCCGCTTTCCACCTTTTTACC 59.772 50.000 0.00 0.00 0.00 2.85
849 1168 3.057806 CACCTTTTTACCGTCCATCCAAC 60.058 47.826 0.00 0.00 0.00 3.77
865 1184 1.021202 CAACCGCCTTTTGACTGACA 58.979 50.000 0.00 0.00 0.00 3.58
866 1185 1.021968 AACCGCCTTTTGACTGACAC 58.978 50.000 0.00 0.00 0.00 3.67
867 1186 0.180406 ACCGCCTTTTGACTGACACT 59.820 50.000 0.00 0.00 0.00 3.55
868 1187 1.414919 ACCGCCTTTTGACTGACACTA 59.585 47.619 0.00 0.00 0.00 2.74
1011 1333 2.034999 TTCCCCATGGCGTCCAAC 59.965 61.111 6.09 0.00 36.95 3.77
1013 1335 2.751436 CCCCATGGCGTCCAACAG 60.751 66.667 6.09 0.00 36.95 3.16
1230 1561 2.123640 GCTAGCGGGAGGGTCTCT 60.124 66.667 0.00 0.00 0.00 3.10
1240 1571 0.034863 GAGGGTCTCTGTCGTCTCCT 60.035 60.000 0.00 0.00 0.00 3.69
1469 1800 9.618890 CCAAGGTACTGTACTTACTACTGTATA 57.381 37.037 16.79 0.00 40.16 1.47
1660 2005 5.112686 TGGCAAGTACATTTGGTTTGTTTC 58.887 37.500 0.00 0.00 0.00 2.78
1665 2010 7.378728 GCAAGTACATTTGGTTTGTTTCTACTC 59.621 37.037 0.00 0.00 0.00 2.59
1899 2256 6.557110 TGATTAATTAGCCGTACCAAAAAGC 58.443 36.000 0.00 0.00 0.00 3.51
1905 2262 1.335597 GCCGTACCAAAAAGCTGGAAC 60.336 52.381 0.00 0.00 38.96 3.62
1919 2276 6.899393 AAGCTGGAACACTAATCAATTTGA 57.101 33.333 0.75 0.75 0.00 2.69
1926 2283 7.920151 TGGAACACTAATCAATTTGAAACAGTG 59.080 33.333 23.24 23.24 38.42 3.66
1927 2284 8.134895 GGAACACTAATCAATTTGAAACAGTGA 58.865 33.333 27.56 2.65 37.16 3.41
1928 2285 9.683069 GAACACTAATCAATTTGAAACAGTGAT 57.317 29.630 27.56 21.54 37.16 3.06
1929 2286 9.683069 AACACTAATCAATTTGAAACAGTGATC 57.317 29.630 27.56 0.00 37.16 2.92
1930 2287 8.017373 ACACTAATCAATTTGAAACAGTGATCG 58.983 33.333 27.56 13.48 37.16 3.69
1931 2288 8.229811 CACTAATCAATTTGAAACAGTGATCGA 58.770 33.333 21.81 0.00 36.47 3.59
1932 2289 8.950210 ACTAATCAATTTGAAACAGTGATCGAT 58.050 29.630 0.00 0.00 0.00 3.59
2077 2455 0.817634 TTGCCGTTCAGTCCAACCAG 60.818 55.000 0.00 0.00 0.00 4.00
2201 2579 1.200020 GTATCCCACAGCTTGCAACAC 59.800 52.381 0.00 0.00 0.00 3.32
2212 2590 3.050275 GCAACACTGGACCTCCGC 61.050 66.667 0.00 0.00 39.43 5.54
2295 2673 1.888215 ACAATGTCACTGCCTCTGTG 58.112 50.000 0.00 0.00 35.20 3.66
2328 2706 7.884877 TGAATTGTCTTGTCTCCACTGATATTT 59.115 33.333 0.00 0.00 0.00 1.40
2330 2708 9.739276 AATTGTCTTGTCTCCACTGATATTTTA 57.261 29.630 0.00 0.00 0.00 1.52
2353 2731 4.664688 AGGTCTGAAGAAATTGGGTCAT 57.335 40.909 0.00 0.00 0.00 3.06
2356 2734 4.335416 GTCTGAAGAAATTGGGTCATGGA 58.665 43.478 0.00 0.00 0.00 3.41
2365 2743 7.840931 AGAAATTGGGTCATGGATTTAAGTTC 58.159 34.615 0.00 0.00 0.00 3.01
2395 2773 1.032657 TAGAGCTCTGCGGGTCTCAC 61.033 60.000 26.78 0.00 42.16 3.51
2400 2778 0.671781 CTCTGCGGGTCTCACTTTGG 60.672 60.000 0.00 0.00 0.00 3.28
2402 2780 0.535102 CTGCGGGTCTCACTTTGGTT 60.535 55.000 0.00 0.00 0.00 3.67
2428 2806 2.674796 AAGCCTGTCCTAACGATGAC 57.325 50.000 0.00 0.00 0.00 3.06
2449 2827 3.181482 ACAACGTTGATGAACAAATGCCA 60.181 39.130 33.66 0.00 40.36 4.92
2499 2877 4.588528 ACCACAGCAAACTCCACAAAATAT 59.411 37.500 0.00 0.00 0.00 1.28
2503 2881 6.308766 CACAGCAAACTCCACAAAATATAAGC 59.691 38.462 0.00 0.00 0.00 3.09
2511 2889 7.151976 ACTCCACAAAATATAAGCCAAAACAC 58.848 34.615 0.00 0.00 0.00 3.32
2523 2901 2.543430 GCCAAAACACAAATTGCGACAT 59.457 40.909 0.00 0.00 0.00 3.06
2545 2923 1.227060 CGCATGCTCGAGGTCATCA 60.227 57.895 17.13 3.11 0.00 3.07
2548 2926 0.926155 CATGCTCGAGGTCATCAACG 59.074 55.000 15.58 0.00 0.00 4.10
2557 2935 1.895798 AGGTCATCAACGCTCTCTTCA 59.104 47.619 0.00 0.00 0.00 3.02
2626 3004 4.081972 GCTTGTGGTCTATCTGTCTTCTCA 60.082 45.833 0.00 0.00 0.00 3.27
2732 3110 2.244486 TCAGAAGAGTGCCTCCTCAT 57.756 50.000 4.34 0.00 33.75 2.90
2734 3112 2.235650 TCAGAAGAGTGCCTCCTCATTG 59.764 50.000 4.34 0.00 33.75 2.82
2752 3130 8.270030 TCCTCATTGATCAATGTTGAGTATTCT 58.730 33.333 35.74 6.00 46.15 2.40
2785 3163 2.279502 CTTCGTCGGAGGGATCGCAA 62.280 60.000 12.83 0.00 0.00 4.85
2795 3173 0.804933 GGGATCGCAACACGGAGTAC 60.805 60.000 4.64 0.00 41.61 2.73
2968 3346 2.812591 CAAGAGCATCAACAAGAGCAGT 59.187 45.455 0.00 0.00 37.82 4.40
3007 3385 0.765510 ACTTCTTGAAAGGGCTCCGT 59.234 50.000 0.00 0.00 0.00 4.69
3031 3409 0.742635 TTACATCGCTGCGGCATGAA 60.743 50.000 26.44 16.99 38.60 2.57
3108 3486 2.120232 CGTCTATGAGTTCATGGCGAC 58.880 52.381 12.96 11.03 36.93 5.19
3123 3501 2.652095 CGACCGGTAGCCTTTCCCA 61.652 63.158 7.34 0.00 0.00 4.37
3145 3523 4.452455 CAGTATTTGGATATCAAGGACGGC 59.548 45.833 4.83 0.00 36.62 5.68
3166 3544 2.482333 CGCCGAGACGAGGATCCTT 61.482 63.158 17.42 0.00 34.06 3.36
3173 3551 1.187087 GACGAGGATCCTTGACTGGT 58.813 55.000 32.26 12.09 0.00 4.00
3260 3638 7.611467 TGTTGAAACATGAAATAGACAGCCTAT 59.389 33.333 0.00 0.00 35.35 2.57
3261 3639 9.109393 GTTGAAACATGAAATAGACAGCCTATA 57.891 33.333 0.00 0.00 37.09 1.31
3407 3795 8.092687 TGTTTACCTAGTGATTTGTTCTACTCC 58.907 37.037 0.00 0.00 0.00 3.85
3474 3862 2.113986 AGCAAACCGAGCAAGCCT 59.886 55.556 0.00 0.00 0.00 4.58
3789 4177 1.517257 CGCCAAGCTCGACGATCTT 60.517 57.895 8.09 8.09 0.00 2.40
3997 4385 3.168292 AGCTAAGCTGCCATTTTCCTTT 58.832 40.909 0.00 0.00 37.57 3.11
4105 4496 6.971756 GCAGTTAGCCAGTTACTACTAGTTAC 59.028 42.308 0.00 0.00 37.23 2.50
4121 4512 5.877012 ACTAGTTACTCAATGGTTGCATCAG 59.123 40.000 0.00 0.00 0.00 2.90
4139 4530 0.461135 AGTTTGGCAGCAACCACTTG 59.539 50.000 0.00 0.00 40.19 3.16
4237 4629 2.742589 GGTGTGCTGCTACTTTTAGGAC 59.257 50.000 0.00 0.00 33.96 3.85
4340 4733 5.131784 GCTACCTATGTACTGTACTGGAGT 58.868 45.833 22.14 15.58 0.00 3.85
4421 4814 1.063266 GTCCTCCTCTGACCTCTGGAT 60.063 57.143 0.00 0.00 0.00 3.41
4440 4837 1.236616 TTCTGCTCGGTGCCATGTTG 61.237 55.000 0.00 0.00 42.00 3.33
4441 4838 1.968017 CTGCTCGGTGCCATGTTGT 60.968 57.895 0.00 0.00 42.00 3.32
4442 4839 1.518056 CTGCTCGGTGCCATGTTGTT 61.518 55.000 0.00 0.00 42.00 2.83
4457 4854 5.630680 CCATGTTGTTGTTACTGATCTTTGC 59.369 40.000 0.00 0.00 0.00 3.68
4556 4956 1.555741 GGCGCTTCAGATCAGATCGC 61.556 60.000 19.65 19.65 38.37 4.58
4588 4988 0.833287 GGCTTCAGATGCTGGTCCTA 59.167 55.000 8.14 0.00 31.51 2.94
4616 5018 1.423541 TGCTTCAGGGTAGGCTTGAAA 59.576 47.619 0.00 0.00 31.11 2.69
4756 5163 1.968050 AAGGTAATCAGACCCGGCCG 61.968 60.000 21.04 21.04 40.74 6.13
4775 5182 3.836949 CCGTGGGAAAATATATGCATGC 58.163 45.455 11.82 11.82 0.00 4.06
4776 5183 3.507233 CCGTGGGAAAATATATGCATGCT 59.493 43.478 20.33 7.07 0.00 3.79
4777 5184 4.699735 CCGTGGGAAAATATATGCATGCTA 59.300 41.667 20.33 9.18 0.00 3.49
4778 5185 5.182950 CCGTGGGAAAATATATGCATGCTAA 59.817 40.000 20.33 7.15 0.00 3.09
4779 5186 6.127647 CCGTGGGAAAATATATGCATGCTAAT 60.128 38.462 20.33 14.20 0.00 1.73
4780 5187 6.748658 CGTGGGAAAATATATGCATGCTAATG 59.251 38.462 20.33 0.00 36.82 1.90
4838 5251 5.279006 CCTCTGTTGTAGCTTGAGAACTGTA 60.279 44.000 0.00 0.00 0.00 2.74
4842 5255 5.983720 TGTTGTAGCTTGAGAACTGTACTTC 59.016 40.000 0.00 0.00 0.00 3.01
4872 5569 8.292448 CACTTGTATGAATTTTGTTAGACTGCT 58.708 33.333 0.00 0.00 0.00 4.24
4922 5651 3.748568 GCATGATCGATCCTAGGGTTTTC 59.251 47.826 22.31 0.91 0.00 2.29
4925 5654 6.575254 GCATGATCGATCCTAGGGTTTTCTAT 60.575 42.308 22.31 1.80 0.00 1.98
4926 5655 7.363880 GCATGATCGATCCTAGGGTTTTCTATA 60.364 40.741 22.31 0.00 0.00 1.31
4927 5656 7.463961 TGATCGATCCTAGGGTTTTCTATAC 57.536 40.000 22.31 0.00 0.00 1.47
4928 5657 5.954296 TCGATCCTAGGGTTTTCTATACG 57.046 43.478 9.46 0.00 0.00 3.06
4929 5658 5.380043 TCGATCCTAGGGTTTTCTATACGT 58.620 41.667 9.46 0.00 0.00 3.57
4930 5659 5.240183 TCGATCCTAGGGTTTTCTATACGTG 59.760 44.000 9.46 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.104417 AGTCACGCCGAGACGCTC 62.104 66.667 8.97 0.00 40.84 5.03
2 3 4.406173 CAGTCACGCCGAGACGCT 62.406 66.667 8.97 0.00 40.84 5.07
4 5 4.406173 AGCAGTCACGCCGAGACG 62.406 66.667 8.97 5.74 40.84 4.18
5 6 2.505118 GAGCAGTCACGCCGAGAC 60.505 66.667 6.57 6.57 36.26 3.36
6 7 3.749064 GGAGCAGTCACGCCGAGA 61.749 66.667 0.00 0.00 0.00 4.04
7 8 4.803426 GGGAGCAGTCACGCCGAG 62.803 72.222 0.00 0.00 0.00 4.63
33 34 3.520721 TCAAAGCAGAGAATGGAGATGGA 59.479 43.478 0.00 0.00 0.00 3.41
36 37 6.897986 AGTAATCAAAGCAGAGAATGGAGAT 58.102 36.000 0.00 0.00 0.00 2.75
40 41 5.067023 GGGAAGTAATCAAAGCAGAGAATGG 59.933 44.000 0.00 0.00 0.00 3.16
90 91 2.225727 CCGTGGCCTTCTTCTTAACAAC 59.774 50.000 3.32 0.00 0.00 3.32
95 96 0.245539 CGTCCGTGGCCTTCTTCTTA 59.754 55.000 3.32 0.00 0.00 2.10
155 156 4.283337 TGAACAAGTCATACCCTCCGATA 58.717 43.478 0.00 0.00 0.00 2.92
201 202 4.505313 TCAAGGCAGCATATACGACTAG 57.495 45.455 0.00 0.00 0.00 2.57
203 204 4.767409 TCTATCAAGGCAGCATATACGACT 59.233 41.667 0.00 0.00 0.00 4.18
204 205 5.060662 TCTATCAAGGCAGCATATACGAC 57.939 43.478 0.00 0.00 0.00 4.34
205 206 5.185828 ACATCTATCAAGGCAGCATATACGA 59.814 40.000 0.00 0.00 0.00 3.43
206 207 5.414360 ACATCTATCAAGGCAGCATATACG 58.586 41.667 0.00 0.00 0.00 3.06
207 208 6.314896 GGAACATCTATCAAGGCAGCATATAC 59.685 42.308 0.00 0.00 0.00 1.47
208 209 6.409704 GGAACATCTATCAAGGCAGCATATA 58.590 40.000 0.00 0.00 0.00 0.86
212 213 2.742856 CGGAACATCTATCAAGGCAGCA 60.743 50.000 0.00 0.00 0.00 4.41
213 214 1.869767 CGGAACATCTATCAAGGCAGC 59.130 52.381 0.00 0.00 0.00 5.25
214 215 2.158900 ACCGGAACATCTATCAAGGCAG 60.159 50.000 9.46 0.00 0.00 4.85
215 216 1.837439 ACCGGAACATCTATCAAGGCA 59.163 47.619 9.46 0.00 0.00 4.75
216 217 2.484889 GACCGGAACATCTATCAAGGC 58.515 52.381 9.46 0.00 0.00 4.35
217 218 2.700897 AGGACCGGAACATCTATCAAGG 59.299 50.000 9.46 0.00 0.00 3.61
218 219 5.473931 CATAGGACCGGAACATCTATCAAG 58.526 45.833 9.46 0.00 0.00 3.02
219 220 4.262463 GCATAGGACCGGAACATCTATCAA 60.262 45.833 9.46 0.00 0.00 2.57
220 221 3.258372 GCATAGGACCGGAACATCTATCA 59.742 47.826 9.46 0.00 0.00 2.15
221 222 3.511934 AGCATAGGACCGGAACATCTATC 59.488 47.826 9.46 0.00 0.00 2.08
222 223 3.511477 AGCATAGGACCGGAACATCTAT 58.489 45.455 9.46 4.79 0.00 1.98
223 224 2.958818 AGCATAGGACCGGAACATCTA 58.041 47.619 9.46 2.40 0.00 1.98
224 225 1.794714 AGCATAGGACCGGAACATCT 58.205 50.000 9.46 0.00 0.00 2.90
225 226 3.963428 ATAGCATAGGACCGGAACATC 57.037 47.619 9.46 0.00 0.00 3.06
226 227 5.067413 CGTATATAGCATAGGACCGGAACAT 59.933 44.000 9.46 1.51 0.00 2.71
227 228 4.397103 CGTATATAGCATAGGACCGGAACA 59.603 45.833 9.46 0.00 0.00 3.18
228 229 4.637534 TCGTATATAGCATAGGACCGGAAC 59.362 45.833 9.46 0.00 0.00 3.62
229 230 4.847198 TCGTATATAGCATAGGACCGGAA 58.153 43.478 9.46 0.00 0.00 4.30
230 231 4.449131 CTCGTATATAGCATAGGACCGGA 58.551 47.826 9.46 0.00 0.00 5.14
231 232 3.003482 GCTCGTATATAGCATAGGACCGG 59.997 52.174 0.00 0.00 39.83 5.28
309 310 4.320456 CAGCCACCTGCCACGAGT 62.320 66.667 0.00 0.00 42.71 4.18
335 336 4.910585 GACGCCTGCCGGGTATGG 62.911 72.222 2.18 0.00 42.52 2.74
336 337 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
352 353 2.743928 GCGCACTCCTCAACCAGG 60.744 66.667 0.30 0.00 45.15 4.45
356 357 4.373116 TCCGGCGCACTCCTCAAC 62.373 66.667 10.83 0.00 0.00 3.18
357 358 4.373116 GTCCGGCGCACTCCTCAA 62.373 66.667 10.83 0.00 0.00 3.02
359 360 4.803426 CAGTCCGGCGCACTCCTC 62.803 72.222 10.83 0.00 0.00 3.71
362 363 3.701604 CTACCAGTCCGGCGCACTC 62.702 68.421 10.83 0.00 39.03 3.51
363 364 3.760035 CTACCAGTCCGGCGCACT 61.760 66.667 10.83 0.00 39.03 4.40
364 365 4.814294 CCTACCAGTCCGGCGCAC 62.814 72.222 10.83 0.00 39.03 5.34
366 367 4.814294 CACCTACCAGTCCGGCGC 62.814 72.222 0.00 0.00 39.03 6.53
367 368 4.814294 GCACCTACCAGTCCGGCG 62.814 72.222 0.00 0.00 39.03 6.46
368 369 4.468689 GGCACCTACCAGTCCGGC 62.469 72.222 0.00 0.00 39.03 6.13
384 385 4.569180 CGCCTGCCTGGTATGGGG 62.569 72.222 0.00 0.16 38.35 4.96
385 386 3.757248 GACGCCTGCCTGGTATGGG 62.757 68.421 0.00 0.00 38.35 4.00
386 387 2.203070 GACGCCTGCCTGGTATGG 60.203 66.667 0.00 0.00 38.35 2.74
388 389 2.365635 AGGACGCCTGCCTGGTAT 60.366 61.111 0.00 0.00 38.35 2.73
397 398 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
413 414 5.404395 ACCTAAACTTCTAAGACCTGAGGT 58.596 41.667 2.41 2.41 39.44 3.85
414 415 6.361768 AACCTAAACTTCTAAGACCTGAGG 57.638 41.667 0.00 0.00 0.00 3.86
415 416 6.651225 CCAAACCTAAACTTCTAAGACCTGAG 59.349 42.308 0.00 0.00 0.00 3.35
416 417 6.531021 CCAAACCTAAACTTCTAAGACCTGA 58.469 40.000 0.00 0.00 0.00 3.86
417 418 5.181433 GCCAAACCTAAACTTCTAAGACCTG 59.819 44.000 0.00 0.00 0.00 4.00
419 420 5.181433 CAGCCAAACCTAAACTTCTAAGACC 59.819 44.000 0.00 0.00 0.00 3.85
420 421 5.334957 GCAGCCAAACCTAAACTTCTAAGAC 60.335 44.000 0.00 0.00 0.00 3.01
421 422 4.760204 GCAGCCAAACCTAAACTTCTAAGA 59.240 41.667 0.00 0.00 0.00 2.10
422 423 4.378459 CGCAGCCAAACCTAAACTTCTAAG 60.378 45.833 0.00 0.00 0.00 2.18
423 424 3.500680 CGCAGCCAAACCTAAACTTCTAA 59.499 43.478 0.00 0.00 0.00 2.10
425 426 1.880027 CGCAGCCAAACCTAAACTTCT 59.120 47.619 0.00 0.00 0.00 2.85
426 427 1.877443 TCGCAGCCAAACCTAAACTTC 59.123 47.619 0.00 0.00 0.00 3.01
427 428 1.975660 TCGCAGCCAAACCTAAACTT 58.024 45.000 0.00 0.00 0.00 2.66
429 430 1.539827 ACATCGCAGCCAAACCTAAAC 59.460 47.619 0.00 0.00 0.00 2.01
431 432 1.003118 AGACATCGCAGCCAAACCTAA 59.997 47.619 0.00 0.00 0.00 2.69
433 434 0.957395 CAGACATCGCAGCCAAACCT 60.957 55.000 0.00 0.00 0.00 3.50
435 436 0.593128 AACAGACATCGCAGCCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
436 437 1.001487 CAAACAGACATCGCAGCCAAA 60.001 47.619 0.00 0.00 0.00 3.28
437 438 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
438 439 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
440 441 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
441 442 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
442 443 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
444 445 4.442706 AGCCTAATACCAAACAGACATCG 58.557 43.478 0.00 0.00 0.00 3.84
446 447 5.189736 TCTGAGCCTAATACCAAACAGACAT 59.810 40.000 0.00 0.00 0.00 3.06
447 448 4.530553 TCTGAGCCTAATACCAAACAGACA 59.469 41.667 0.00 0.00 0.00 3.41
448 449 4.870991 GTCTGAGCCTAATACCAAACAGAC 59.129 45.833 0.00 0.00 43.32 3.51
449 450 4.777896 AGTCTGAGCCTAATACCAAACAGA 59.222 41.667 0.00 0.00 0.00 3.41
450 451 5.091261 AGTCTGAGCCTAATACCAAACAG 57.909 43.478 0.00 0.00 0.00 3.16
451 452 6.382859 TGATAGTCTGAGCCTAATACCAAACA 59.617 38.462 0.00 0.00 0.00 2.83
452 453 6.817184 TGATAGTCTGAGCCTAATACCAAAC 58.183 40.000 0.00 0.00 0.00 2.93
453 454 6.463049 GCTGATAGTCTGAGCCTAATACCAAA 60.463 42.308 0.00 0.00 0.00 3.28
454 455 5.011125 GCTGATAGTCTGAGCCTAATACCAA 59.989 44.000 0.00 0.00 0.00 3.67
455 456 4.524714 GCTGATAGTCTGAGCCTAATACCA 59.475 45.833 0.00 0.00 0.00 3.25
456 457 4.380023 CGCTGATAGTCTGAGCCTAATACC 60.380 50.000 0.00 0.00 0.00 2.73
457 458 4.728534 CGCTGATAGTCTGAGCCTAATAC 58.271 47.826 0.00 0.00 0.00 1.89
458 459 3.191581 GCGCTGATAGTCTGAGCCTAATA 59.808 47.826 0.00 0.00 35.72 0.98
459 460 2.029470 GCGCTGATAGTCTGAGCCTAAT 60.029 50.000 0.00 0.00 35.72 1.73
460 461 1.338337 GCGCTGATAGTCTGAGCCTAA 59.662 52.381 0.00 0.00 35.72 2.69
461 462 0.955178 GCGCTGATAGTCTGAGCCTA 59.045 55.000 0.00 0.00 35.72 3.93
462 463 1.739049 GCGCTGATAGTCTGAGCCT 59.261 57.895 0.00 0.00 35.72 4.58
463 464 4.334837 GCGCTGATAGTCTGAGCC 57.665 61.111 0.00 0.00 35.72 4.70
464 465 1.300542 GGGCGCTGATAGTCTGAGC 60.301 63.158 7.64 4.48 39.59 4.26
465 466 1.112315 AGGGGCGCTGATAGTCTGAG 61.112 60.000 7.64 0.00 0.00 3.35
466 467 0.687757 AAGGGGCGCTGATAGTCTGA 60.688 55.000 7.64 0.00 0.00 3.27
467 468 0.249657 GAAGGGGCGCTGATAGTCTG 60.250 60.000 7.64 0.00 0.00 3.51
468 469 0.687757 TGAAGGGGCGCTGATAGTCT 60.688 55.000 7.64 0.00 0.00 3.24
469 470 0.394565 ATGAAGGGGCGCTGATAGTC 59.605 55.000 7.64 0.00 0.00 2.59
470 471 0.394565 GATGAAGGGGCGCTGATAGT 59.605 55.000 7.64 0.00 0.00 2.12
471 472 0.394192 TGATGAAGGGGCGCTGATAG 59.606 55.000 7.64 0.00 0.00 2.08
472 473 0.836606 TTGATGAAGGGGCGCTGATA 59.163 50.000 7.64 0.00 0.00 2.15
473 474 0.749454 GTTGATGAAGGGGCGCTGAT 60.749 55.000 7.64 0.00 0.00 2.90
474 475 1.377202 GTTGATGAAGGGGCGCTGA 60.377 57.895 7.64 0.00 0.00 4.26
475 476 1.377725 AGTTGATGAAGGGGCGCTG 60.378 57.895 7.64 0.00 0.00 5.18
476 477 1.377725 CAGTTGATGAAGGGGCGCT 60.378 57.895 7.64 0.00 0.00 5.92
477 478 2.409870 CCAGTTGATGAAGGGGCGC 61.410 63.158 0.00 0.00 0.00 6.53
478 479 0.107017 ATCCAGTTGATGAAGGGGCG 60.107 55.000 0.00 0.00 30.54 6.13
479 480 2.487986 CCTATCCAGTTGATGAAGGGGC 60.488 54.545 0.00 0.00 34.76 5.80
480 481 2.780010 ACCTATCCAGTTGATGAAGGGG 59.220 50.000 0.00 0.00 34.76 4.79
481 482 5.832539 ATACCTATCCAGTTGATGAAGGG 57.167 43.478 0.00 0.00 34.76 3.95
482 483 6.402222 GCTATACCTATCCAGTTGATGAAGG 58.598 44.000 0.00 0.00 34.76 3.46
483 484 6.071896 TCGCTATACCTATCCAGTTGATGAAG 60.072 42.308 0.00 0.00 34.76 3.02
484 485 5.773176 TCGCTATACCTATCCAGTTGATGAA 59.227 40.000 0.00 0.00 34.76 2.57
485 486 5.183331 GTCGCTATACCTATCCAGTTGATGA 59.817 44.000 0.00 0.00 34.76 2.92
486 487 5.048013 TGTCGCTATACCTATCCAGTTGATG 60.048 44.000 0.00 0.00 34.76 3.07
487 488 5.077564 TGTCGCTATACCTATCCAGTTGAT 58.922 41.667 0.00 0.00 37.49 2.57
488 489 4.466827 TGTCGCTATACCTATCCAGTTGA 58.533 43.478 0.00 0.00 0.00 3.18
489 490 4.278669 ACTGTCGCTATACCTATCCAGTTG 59.721 45.833 0.00 0.00 0.00 3.16
490 491 4.471548 ACTGTCGCTATACCTATCCAGTT 58.528 43.478 0.00 0.00 0.00 3.16
491 492 4.101645 ACTGTCGCTATACCTATCCAGT 57.898 45.455 0.00 0.00 0.00 4.00
492 493 4.278669 ACAACTGTCGCTATACCTATCCAG 59.721 45.833 0.00 0.00 0.00 3.86
493 494 4.212716 ACAACTGTCGCTATACCTATCCA 58.787 43.478 0.00 0.00 0.00 3.41
494 495 4.850347 ACAACTGTCGCTATACCTATCC 57.150 45.455 0.00 0.00 0.00 2.59
495 496 5.828747 TCAACAACTGTCGCTATACCTATC 58.171 41.667 0.00 0.00 0.00 2.08
496 497 5.847111 TCAACAACTGTCGCTATACCTAT 57.153 39.130 0.00 0.00 0.00 2.57
497 498 5.847111 ATCAACAACTGTCGCTATACCTA 57.153 39.130 0.00 0.00 0.00 3.08
498 499 4.737855 ATCAACAACTGTCGCTATACCT 57.262 40.909 0.00 0.00 0.00 3.08
499 500 6.198591 GTCTAATCAACAACTGTCGCTATACC 59.801 42.308 0.00 0.00 0.00 2.73
500 501 6.075519 CGTCTAATCAACAACTGTCGCTATAC 60.076 42.308 0.00 0.00 0.00 1.47
501 502 5.969435 CGTCTAATCAACAACTGTCGCTATA 59.031 40.000 0.00 0.00 0.00 1.31
502 503 4.798907 CGTCTAATCAACAACTGTCGCTAT 59.201 41.667 0.00 0.00 0.00 2.97
503 504 4.163552 CGTCTAATCAACAACTGTCGCTA 58.836 43.478 0.00 0.00 0.00 4.26
504 505 2.987149 CGTCTAATCAACAACTGTCGCT 59.013 45.455 0.00 0.00 0.00 4.93
505 506 2.092211 CCGTCTAATCAACAACTGTCGC 59.908 50.000 0.00 0.00 0.00 5.19
506 507 3.121279 CACCGTCTAATCAACAACTGTCG 59.879 47.826 0.00 0.00 0.00 4.35
507 508 3.432252 CCACCGTCTAATCAACAACTGTC 59.568 47.826 0.00 0.00 0.00 3.51
508 509 3.399330 CCACCGTCTAATCAACAACTGT 58.601 45.455 0.00 0.00 0.00 3.55
509 510 2.159627 GCCACCGTCTAATCAACAACTG 59.840 50.000 0.00 0.00 0.00 3.16
510 511 2.038557 AGCCACCGTCTAATCAACAACT 59.961 45.455 0.00 0.00 0.00 3.16
511 512 2.423577 AGCCACCGTCTAATCAACAAC 58.576 47.619 0.00 0.00 0.00 3.32
512 513 2.851263 AGCCACCGTCTAATCAACAA 57.149 45.000 0.00 0.00 0.00 2.83
513 514 2.037902 TGAAGCCACCGTCTAATCAACA 59.962 45.455 0.00 0.00 0.00 3.33
514 515 2.673368 CTGAAGCCACCGTCTAATCAAC 59.327 50.000 0.00 0.00 0.00 3.18
515 516 2.301870 ACTGAAGCCACCGTCTAATCAA 59.698 45.455 0.00 0.00 0.00 2.57
516 517 1.899814 ACTGAAGCCACCGTCTAATCA 59.100 47.619 0.00 0.00 0.00 2.57
517 518 2.166664 AGACTGAAGCCACCGTCTAATC 59.833 50.000 3.74 0.00 35.15 1.75
518 519 2.180276 AGACTGAAGCCACCGTCTAAT 58.820 47.619 3.74 0.00 35.15 1.73
519 520 1.629043 AGACTGAAGCCACCGTCTAA 58.371 50.000 3.74 0.00 35.15 2.10
520 521 1.629043 AAGACTGAAGCCACCGTCTA 58.371 50.000 5.55 0.00 35.82 2.59
521 522 1.272769 GTAAGACTGAAGCCACCGTCT 59.727 52.381 0.00 0.00 38.29 4.18
522 523 1.272769 AGTAAGACTGAAGCCACCGTC 59.727 52.381 0.00 0.00 0.00 4.79
523 524 1.339097 AGTAAGACTGAAGCCACCGT 58.661 50.000 0.00 0.00 0.00 4.83
534 535 9.477484 CTTACAAAGTCATACAACAGTAAGACT 57.523 33.333 7.48 7.48 44.26 3.24
535 536 8.709646 CCTTACAAAGTCATACAACAGTAAGAC 58.290 37.037 0.00 3.57 39.45 3.01
536 537 8.426489 ACCTTACAAAGTCATACAACAGTAAGA 58.574 33.333 0.00 0.00 39.45 2.10
537 538 8.603242 ACCTTACAAAGTCATACAACAGTAAG 57.397 34.615 0.00 0.00 37.80 2.34
538 539 8.426489 AGACCTTACAAAGTCATACAACAGTAA 58.574 33.333 0.00 0.00 0.00 2.24
539 540 7.959175 AGACCTTACAAAGTCATACAACAGTA 58.041 34.615 0.00 0.00 0.00 2.74
540 541 6.827727 AGACCTTACAAAGTCATACAACAGT 58.172 36.000 0.00 0.00 0.00 3.55
541 542 7.730364 AAGACCTTACAAAGTCATACAACAG 57.270 36.000 0.00 0.00 0.00 3.16
542 543 9.214957 CATAAGACCTTACAAAGTCATACAACA 57.785 33.333 0.00 0.00 0.00 3.33
543 544 9.431887 TCATAAGACCTTACAAAGTCATACAAC 57.568 33.333 0.00 0.00 0.00 3.32
544 545 9.653287 CTCATAAGACCTTACAAAGTCATACAA 57.347 33.333 0.00 0.00 0.00 2.41
545 546 9.031537 TCTCATAAGACCTTACAAAGTCATACA 57.968 33.333 0.00 0.00 0.00 2.29
546 547 9.871238 TTCTCATAAGACCTTACAAAGTCATAC 57.129 33.333 0.00 0.00 0.00 2.39
565 566 8.726988 GCGGCCACTTTATTAATTATTCTCATA 58.273 33.333 2.24 0.00 0.00 2.15
566 567 7.230510 TGCGGCCACTTTATTAATTATTCTCAT 59.769 33.333 2.24 0.00 0.00 2.90
567 568 6.544197 TGCGGCCACTTTATTAATTATTCTCA 59.456 34.615 2.24 0.00 0.00 3.27
568 569 6.966021 TGCGGCCACTTTATTAATTATTCTC 58.034 36.000 2.24 0.00 0.00 2.87
569 570 6.952773 TGCGGCCACTTTATTAATTATTCT 57.047 33.333 2.24 0.00 0.00 2.40
570 571 6.089417 GCATGCGGCCACTTTATTAATTATTC 59.911 38.462 0.00 0.00 36.11 1.75
571 572 5.925969 GCATGCGGCCACTTTATTAATTATT 59.074 36.000 0.00 0.00 36.11 1.40
572 573 5.010516 TGCATGCGGCCACTTTATTAATTAT 59.989 36.000 14.09 0.00 43.89 1.28
573 574 4.339530 TGCATGCGGCCACTTTATTAATTA 59.660 37.500 14.09 0.00 43.89 1.40
574 575 3.131933 TGCATGCGGCCACTTTATTAATT 59.868 39.130 14.09 0.00 43.89 1.40
575 576 2.692557 TGCATGCGGCCACTTTATTAAT 59.307 40.909 14.09 0.00 43.89 1.40
576 577 2.095461 TGCATGCGGCCACTTTATTAA 58.905 42.857 14.09 0.00 43.89 1.40
577 578 1.756430 TGCATGCGGCCACTTTATTA 58.244 45.000 14.09 0.00 43.89 0.98
578 579 1.067516 GATGCATGCGGCCACTTTATT 59.932 47.619 14.09 0.00 43.89 1.40
579 580 0.670162 GATGCATGCGGCCACTTTAT 59.330 50.000 14.09 0.00 43.89 1.40
580 581 1.713937 CGATGCATGCGGCCACTTTA 61.714 55.000 14.09 0.00 43.89 1.85
581 582 2.887360 GATGCATGCGGCCACTTT 59.113 55.556 14.09 0.00 43.89 2.66
582 583 3.511595 CGATGCATGCGGCCACTT 61.512 61.111 14.09 0.00 43.89 3.16
588 589 1.375140 ATCTAGGCGATGCATGCGG 60.375 57.895 14.09 6.01 0.00 5.69
589 590 1.785951 CATCTAGGCGATGCATGCG 59.214 57.895 14.09 9.10 42.75 4.73
600 601 0.900647 CCCCGGCCTCTACATCTAGG 60.901 65.000 0.00 0.00 35.86 3.02
601 602 0.178958 ACCCCGGCCTCTACATCTAG 60.179 60.000 0.00 0.00 0.00 2.43
602 603 0.178970 GACCCCGGCCTCTACATCTA 60.179 60.000 0.00 0.00 0.00 1.98
603 604 1.457831 GACCCCGGCCTCTACATCT 60.458 63.158 0.00 0.00 0.00 2.90
604 605 1.122019 ATGACCCCGGCCTCTACATC 61.122 60.000 0.00 0.00 0.00 3.06
605 606 1.074471 ATGACCCCGGCCTCTACAT 60.074 57.895 0.00 0.00 0.00 2.29
606 607 1.760875 GATGACCCCGGCCTCTACA 60.761 63.158 0.00 0.00 0.00 2.74
607 608 2.508751 GGATGACCCCGGCCTCTAC 61.509 68.421 0.00 0.00 0.00 2.59
608 609 2.122989 GGATGACCCCGGCCTCTA 60.123 66.667 0.00 0.00 0.00 2.43
609 610 4.095400 AGGATGACCCCGGCCTCT 62.095 66.667 0.00 0.00 36.73 3.69
610 611 3.551407 GAGGATGACCCCGGCCTC 61.551 72.222 7.66 7.66 40.04 4.70
613 614 2.211468 AAAAGGAGGATGACCCCGGC 62.211 60.000 0.00 0.00 36.73 6.13
614 615 0.107165 GAAAAGGAGGATGACCCCGG 60.107 60.000 0.00 0.00 36.73 5.73
615 616 0.912486 AGAAAAGGAGGATGACCCCG 59.088 55.000 0.00 0.00 36.73 5.73
616 617 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
704 1022 3.424703 ACACCCTGAAGATGGACAAATG 58.575 45.455 0.00 0.00 0.00 2.32
729 1047 0.673985 TCTGTGTCAAGTGAGTCGGG 59.326 55.000 0.00 0.00 0.00 5.14
754 1072 0.601046 CGTGTGGGATGGATCGGATG 60.601 60.000 0.00 0.00 0.00 3.51
795 1113 1.436983 GGCTTACGGGGATTTGCGAG 61.437 60.000 0.00 0.00 0.00 5.03
838 1157 1.241315 AAAAGGCGGTTGGATGGACG 61.241 55.000 0.00 0.00 0.00 4.79
849 1168 2.163818 TAGTGTCAGTCAAAAGGCGG 57.836 50.000 0.00 0.00 0.00 6.13
865 1184 2.533492 GGGGGTGGTGGGGTTAGT 60.533 66.667 0.00 0.00 0.00 2.24
866 1185 2.533232 TGGGGGTGGTGGGGTTAG 60.533 66.667 0.00 0.00 0.00 2.34
867 1186 2.859971 GTGGGGGTGGTGGGGTTA 60.860 66.667 0.00 0.00 0.00 2.85
1051 1382 2.835895 GGAGGAGGAGGAGGTCGC 60.836 72.222 0.00 0.00 0.00 5.19
1284 1615 2.187946 GTGAGTCCCGGGAGCATG 59.812 66.667 27.72 0.00 0.00 4.06
1469 1800 2.785562 AGAACTCGCTCAGTAGTCAGT 58.214 47.619 0.00 0.00 32.30 3.41
1660 2005 3.127352 GAGGGCGAGCCACGAGTAG 62.127 68.421 16.65 0.00 45.77 2.57
1682 2027 3.911661 AATCAGCAGCAGACAAGAAAC 57.088 42.857 0.00 0.00 0.00 2.78
1742 2087 0.394938 TAGCCGTGCAAGAGGACAAA 59.605 50.000 0.00 0.00 35.57 2.83
1838 2195 9.297037 GTGGACAGGTAATTAATTATAATGGCT 57.703 33.333 11.00 0.00 32.06 4.75
1899 2256 8.137437 ACTGTTTCAAATTGATTAGTGTTCCAG 58.863 33.333 0.00 0.00 0.00 3.86
1905 2262 8.229811 TCGATCACTGTTTCAAATTGATTAGTG 58.770 33.333 19.55 19.55 35.33 2.74
1919 2276 7.164230 AGAGAAGAACTATCGATCACTGTTT 57.836 36.000 0.00 0.00 0.00 2.83
1928 2285 9.967346 CATTTACCATTAGAGAAGAACTATCGA 57.033 33.333 0.00 0.00 0.00 3.59
1929 2286 9.197694 CCATTTACCATTAGAGAAGAACTATCG 57.802 37.037 0.00 0.00 0.00 2.92
1930 2287 8.994170 GCCATTTACCATTAGAGAAGAACTATC 58.006 37.037 0.00 0.00 0.00 2.08
1931 2288 8.718656 AGCCATTTACCATTAGAGAAGAACTAT 58.281 33.333 0.00 0.00 0.00 2.12
1932 2289 7.987458 CAGCCATTTACCATTAGAGAAGAACTA 59.013 37.037 0.00 0.00 0.00 2.24
1933 2290 6.825721 CAGCCATTTACCATTAGAGAAGAACT 59.174 38.462 0.00 0.00 0.00 3.01
2077 2455 4.603946 GGTATCGCCCCGGTGAGC 62.604 72.222 0.00 0.00 38.09 4.26
2128 2506 1.339438 TGATTGGAGCTCAAGTCCAGC 60.339 52.381 17.19 1.88 45.00 4.85
2201 2579 1.338674 TGTATTGTTGCGGAGGTCCAG 60.339 52.381 0.00 0.00 35.14 3.86
2295 2673 1.464997 GACAAGACAATTCAGACGGCC 59.535 52.381 0.00 0.00 0.00 6.13
2299 2677 4.450419 CAGTGGAGACAAGACAATTCAGAC 59.550 45.833 0.00 0.00 46.06 3.51
2328 2706 7.265599 TGACCCAATTTCTTCAGACCTATAA 57.734 36.000 0.00 0.00 0.00 0.98
2330 2708 5.779241 TGACCCAATTTCTTCAGACCTAT 57.221 39.130 0.00 0.00 0.00 2.57
2353 2731 9.058174 TCTAAATTGTTGTCGAACTTAAATCCA 57.942 29.630 0.00 0.00 32.79 3.41
2356 2734 8.784043 AGCTCTAAATTGTTGTCGAACTTAAAT 58.216 29.630 0.00 0.00 32.79 1.40
2365 2743 3.482598 CGCAGAGCTCTAAATTGTTGTCG 60.483 47.826 17.75 6.81 0.00 4.35
2395 2773 3.217626 ACAGGCTTTCAGAGAACCAAAG 58.782 45.455 0.00 0.00 0.00 2.77
2400 2778 2.849294 AGGACAGGCTTTCAGAGAAC 57.151 50.000 2.68 0.00 0.00 3.01
2402 2780 2.231478 CGTTAGGACAGGCTTTCAGAGA 59.769 50.000 2.68 0.00 0.00 3.10
2428 2806 3.182173 GTGGCATTTGTTCATCAACGTTG 59.818 43.478 22.35 22.35 35.61 4.10
2434 2812 5.477510 GGTTTATGTGGCATTTGTTCATCA 58.522 37.500 0.00 0.00 0.00 3.07
2440 2818 2.520069 TCGGGTTTATGTGGCATTTGT 58.480 42.857 0.00 0.00 0.00 2.83
2449 2827 3.009695 TGGAGGTTGATTCGGGTTTATGT 59.990 43.478 0.00 0.00 0.00 2.29
2499 2877 3.799420 GTCGCAATTTGTGTTTTGGCTTA 59.201 39.130 9.61 0.00 0.00 3.09
2503 2881 3.121396 CGATGTCGCAATTTGTGTTTTGG 60.121 43.478 9.61 0.00 0.00 3.28
2511 2889 3.966732 CGCCGATGTCGCAATTTG 58.033 55.556 0.00 0.00 38.18 2.32
2557 2935 1.768684 TTCCGGCAAGAACAGCTCCT 61.769 55.000 0.00 0.00 0.00 3.69
2647 3025 3.023832 CTCCACAGAACAACCAACCTTT 58.976 45.455 0.00 0.00 0.00 3.11
2659 3037 1.349026 CCTTCCAAGCTCTCCACAGAA 59.651 52.381 0.00 0.00 0.00 3.02
2732 3110 7.280876 GCCACTAGAATACTCAACATTGATCAA 59.719 37.037 11.26 11.26 36.46 2.57
2734 3112 6.989169 AGCCACTAGAATACTCAACATTGATC 59.011 38.462 0.00 0.00 36.46 2.92
2752 3130 0.830444 ACGAAGTGTCCCAGCCACTA 60.830 55.000 0.00 0.00 42.17 2.74
2785 3163 2.020131 CGATAGCCGTACTCCGTGT 58.980 57.895 0.00 0.00 33.66 4.49
2821 3199 4.106197 CCTCTTCGAGATTGAACCTTACG 58.894 47.826 0.00 0.00 0.00 3.18
2824 3202 3.307059 CCACCTCTTCGAGATTGAACCTT 60.307 47.826 0.00 0.00 0.00 3.50
2968 3346 2.347490 GCCTCCTCCGACTTGCAA 59.653 61.111 0.00 0.00 0.00 4.08
3007 3385 2.100031 CCGCAGCGATGTAAGCACA 61.100 57.895 18.75 0.00 39.52 4.57
3031 3409 2.325484 CCCCTTAAGCCAACAAGGTTT 58.675 47.619 0.00 0.00 43.86 3.27
3108 3486 1.129058 ATACTGGGAAAGGCTACCGG 58.871 55.000 0.00 0.00 36.70 5.28
3123 3501 4.642429 GCCGTCCTTGATATCCAAATACT 58.358 43.478 0.00 0.00 33.76 2.12
3145 3523 3.509296 GATCCTCGTCTCGGCGTCG 62.509 68.421 1.15 1.15 37.82 5.12
3166 3544 0.469331 AGACCCGAGTTGACCAGTCA 60.469 55.000 0.00 0.00 37.91 3.41
3173 3551 1.757118 GATGATGGAGACCCGAGTTGA 59.243 52.381 0.00 0.00 34.29 3.18
3355 3736 2.131776 TGGCTCATCATTGTGCATCA 57.868 45.000 0.00 0.00 42.71 3.07
3407 3795 5.334319 TAATTCAGAATTTCAGCATGTGCG 58.666 37.500 13.71 0.00 37.97 5.34
3474 3862 1.801242 TGTTCTGGTGGACAAGAGGA 58.199 50.000 0.00 0.00 0.00 3.71
3786 4174 2.847234 AGGCGGTGGTCCACAAGA 60.847 61.111 23.48 0.00 35.86 3.02
3997 4385 1.361204 TCCATGGAACTGGAGCTGAA 58.639 50.000 13.46 0.00 40.43 3.02
4105 4496 3.581755 CCAAACTGATGCAACCATTGAG 58.418 45.455 0.00 0.00 0.00 3.02
4121 4512 0.459489 TCAAGTGGTTGCTGCCAAAC 59.541 50.000 0.00 0.00 40.68 2.93
4139 4530 0.038159 CACCGGACCAGACTGAACTC 60.038 60.000 9.46 0.00 0.00 3.01
4190 4582 5.047306 CACCACACATTTACAGTAGAGAGGA 60.047 44.000 0.00 0.00 0.00 3.71
4340 4733 7.553402 GCCTAGTACTATCAGCTAAGCATACTA 59.447 40.741 2.33 0.00 0.00 1.82
4440 4837 3.058914 ACGCAGCAAAGATCAGTAACAAC 60.059 43.478 0.00 0.00 0.00 3.32
4441 4838 3.138304 ACGCAGCAAAGATCAGTAACAA 58.862 40.909 0.00 0.00 0.00 2.83
4442 4839 2.766313 ACGCAGCAAAGATCAGTAACA 58.234 42.857 0.00 0.00 0.00 2.41
4556 4956 2.095969 TCTGAAGCCACGTTTTAATGCG 60.096 45.455 0.00 0.00 0.00 4.73
4588 4988 4.017126 GCCTACCCTGAAGCAAAAGTAAT 58.983 43.478 0.00 0.00 0.00 1.89
4616 5018 2.166664 GTCGATCCTACTCTGCCAAAGT 59.833 50.000 0.00 0.00 0.00 2.66
4756 5163 7.829725 TCATTAGCATGCATATATTTTCCCAC 58.170 34.615 21.98 0.00 0.00 4.61
4779 5186 9.868277 AAACAGTTGACTTGATTACAAAATTCA 57.132 25.926 0.00 0.00 35.49 2.57
4800 5213 0.239347 CAGAGGAGCGGCAAAAACAG 59.761 55.000 1.45 0.00 0.00 3.16
4803 5216 0.667993 CAACAGAGGAGCGGCAAAAA 59.332 50.000 1.45 0.00 0.00 1.94
4838 5251 8.225603 ACAAAATTCATACAAGTGAGTGAAGT 57.774 30.769 8.34 4.44 34.45 3.01
4842 5255 9.599322 GTCTAACAAAATTCATACAAGTGAGTG 57.401 33.333 0.00 0.00 0.00 3.51
4872 5569 1.266718 GCAATTTGCTGAGTTGGACGA 59.733 47.619 14.11 0.00 40.96 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.