Multiple sequence alignment - TraesCS7D01G312700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G312700 chr7D 100.000 4156 0 0 1 4156 396387200 396391355 0.000000e+00 7675.0
1 TraesCS7D01G312700 chr7D 75.754 796 137 36 2147 2911 599066574 599067344 2.380000e-92 350.0
2 TraesCS7D01G312700 chr7D 77.628 371 62 13 2433 2794 598724543 598724901 5.450000e-49 206.0
3 TraesCS7D01G312700 chr7D 85.366 82 10 2 196 275 213789733 213789652 2.660000e-12 84.2
4 TraesCS7D01G312700 chr7B 95.519 3169 87 18 550 3692 399786961 399790100 0.000000e+00 5014.0
5 TraesCS7D01G312700 chr7B 77.388 827 134 34 2158 2954 678338265 678339068 3.810000e-120 442.0
6 TraesCS7D01G312700 chr7B 92.887 239 14 1 3918 4156 399791197 399791432 1.110000e-90 344.0
7 TraesCS7D01G312700 chr7B 96.791 187 5 1 3743 3928 399790100 399790286 1.120000e-80 311.0
8 TraesCS7D01G312700 chr7B 77.439 164 33 4 2446 2608 399797849 399798009 1.230000e-15 95.3
9 TraesCS7D01G312700 chr7B 85.366 82 10 2 196 275 622806940 622807021 2.660000e-12 84.2
10 TraesCS7D01G312700 chr7B 84.810 79 11 1 201 279 335842643 335842566 1.240000e-10 78.7
11 TraesCS7D01G312700 chr7A 91.961 1530 80 16 845 2349 450002976 450004487 0.000000e+00 2104.0
12 TraesCS7D01G312700 chr7A 87.917 960 74 22 2409 3363 450004494 450005416 0.000000e+00 1092.0
13 TraesCS7D01G312700 chr7A 85.660 530 51 8 278 786 449999155 449999680 6.120000e-148 534.0
14 TraesCS7D01G312700 chr7A 75.776 838 147 36 2147 2954 691272253 691273064 5.070000e-99 372.0
15 TraesCS7D01G312700 chr7A 78.089 429 72 8 2229 2639 691277395 691277819 6.900000e-63 252.0
16 TraesCS7D01G312700 chr7A 84.239 184 22 5 268 449 50264126 50263948 5.520000e-39 172.0
17 TraesCS7D01G312700 chr7A 80.769 104 13 5 3377 3477 450005461 450005560 1.600000e-09 75.0
18 TraesCS7D01G312700 chr5D 77.419 372 62 14 2433 2794 446098907 446098548 7.040000e-48 202.0
19 TraesCS7D01G312700 chr5D 89.231 65 7 0 460 524 238148715 238148779 9.580000e-12 82.4
20 TraesCS7D01G312700 chr4A 85.475 179 21 4 265 441 733887360 733887185 9.180000e-42 182.0
21 TraesCS7D01G312700 chr4A 86.420 81 11 0 448 528 742467315 742467395 5.720000e-14 89.8
22 TraesCS7D01G312700 chr6B 85.632 174 21 3 277 449 624136227 624136057 3.300000e-41 180.0
23 TraesCS7D01G312700 chr6B 84.746 177 21 5 274 449 457410639 457410810 5.520000e-39 172.0
24 TraesCS7D01G312700 chr6B 87.500 64 8 0 461 524 39312914 39312851 1.600000e-09 75.0
25 TraesCS7D01G312700 chr2B 86.667 165 18 3 278 441 787077484 787077645 3.300000e-41 180.0
26 TraesCS7D01G312700 chr2B 86.667 165 17 4 278 441 401145987 401145827 1.190000e-40 178.0
27 TraesCS7D01G312700 chr2B 83.696 92 13 2 447 536 773140375 773140466 7.400000e-13 86.1
28 TraesCS7D01G312700 chr2B 84.146 82 11 2 196 275 243075682 243075601 1.240000e-10 78.7
29 TraesCS7D01G312700 chr5B 85.632 174 20 4 277 449 505218678 505218847 1.190000e-40 178.0
30 TraesCS7D01G312700 chr3D 85.549 173 20 4 278 449 367333769 367333937 4.270000e-40 176.0
31 TraesCS7D01G312700 chr3D 85.000 80 9 3 196 273 108419852 108419774 1.240000e-10 78.7
32 TraesCS7D01G312700 chr3D 84.615 78 11 1 448 524 357946687 357946610 4.460000e-10 76.8
33 TraesCS7D01G312700 chr4B 85.143 175 21 4 276 449 574003736 574003906 1.540000e-39 174.0
34 TraesCS7D01G312700 chr5A 84.375 96 15 0 448 543 470025870 470025965 1.230000e-15 95.3
35 TraesCS7D01G312700 chr1B 84.375 96 15 0 448 543 60103269 60103364 1.230000e-15 95.3
36 TraesCS7D01G312700 chr1B 86.420 81 11 0 448 528 593740459 593740539 5.720000e-14 89.8
37 TraesCS7D01G312700 chr6A 86.585 82 9 2 196 275 51894967 51895048 5.720000e-14 89.8
38 TraesCS7D01G312700 chr6A 85.915 71 9 1 454 524 46574569 46574638 1.600000e-09 75.0
39 TraesCS7D01G312700 chr3A 85.185 81 10 2 196 275 118584144 118584065 9.580000e-12 82.4
40 TraesCS7D01G312700 chr2D 84.146 82 11 2 196 275 630002113 630002032 1.240000e-10 78.7
41 TraesCS7D01G312700 chr2A 84.146 82 11 2 196 275 149456734 149456653 1.240000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G312700 chr7D 396387200 396391355 4155 False 7675.000000 7675 100.000000 1 4156 1 chr7D.!!$F1 4155
1 TraesCS7D01G312700 chr7D 599066574 599067344 770 False 350.000000 350 75.754000 2147 2911 1 chr7D.!!$F3 764
2 TraesCS7D01G312700 chr7B 399786961 399791432 4471 False 1889.666667 5014 95.065667 550 4156 3 chr7B.!!$F4 3606
3 TraesCS7D01G312700 chr7B 678338265 678339068 803 False 442.000000 442 77.388000 2158 2954 1 chr7B.!!$F3 796
4 TraesCS7D01G312700 chr7A 449999155 450005560 6405 False 951.250000 2104 86.576750 278 3477 4 chr7A.!!$F3 3199
5 TraesCS7D01G312700 chr7A 691272253 691273064 811 False 372.000000 372 75.776000 2147 2954 1 chr7A.!!$F1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.036010 CCTCCTCGGAGCACACAAAT 60.036 55.0 7.46 0.0 40.69 2.32 F
990 4264 0.389757 CGCTAGCTAAACCCTCTCCC 59.610 60.0 13.93 0.0 0.00 4.30 F
1305 4582 0.662374 TCGTCGGTCTCGTTTTGCTC 60.662 55.0 0.00 0.0 37.69 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 4787 0.040067 CGAGCAAGGCAACCTGAAAC 60.040 55.0 0.0 0.0 32.13 2.78 R
2976 6315 1.667236 TGACATGGATAGCTTTGGCG 58.333 50.0 0.0 0.0 44.37 5.69 R
3162 6501 2.286365 TCCAAGAACGCCAAAAGGAT 57.714 45.0 0.0 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.568003 TGGACAGTCGAGGTAGCTG 58.432 57.895 0.00 0.00 36.41 4.24
19 20 1.139947 GGACAGTCGAGGTAGCTGC 59.860 63.158 0.00 0.00 33.87 5.25
20 21 1.139947 GACAGTCGAGGTAGCTGCC 59.860 63.158 13.81 13.81 33.87 4.85
21 22 1.595993 GACAGTCGAGGTAGCTGCCA 61.596 60.000 23.78 0.00 33.87 4.92
22 23 1.185618 ACAGTCGAGGTAGCTGCCAA 61.186 55.000 23.78 5.03 33.87 4.52
23 24 0.737715 CAGTCGAGGTAGCTGCCAAC 60.738 60.000 23.78 16.72 0.00 3.77
24 25 0.900647 AGTCGAGGTAGCTGCCAACT 60.901 55.000 23.78 18.60 0.00 3.16
25 26 0.458716 GTCGAGGTAGCTGCCAACTC 60.459 60.000 23.78 10.89 0.00 3.01
26 27 0.898326 TCGAGGTAGCTGCCAACTCA 60.898 55.000 23.78 3.49 0.00 3.41
27 28 0.737715 CGAGGTAGCTGCCAACTCAC 60.738 60.000 23.78 5.96 0.00 3.51
28 29 0.391793 GAGGTAGCTGCCAACTCACC 60.392 60.000 23.78 6.78 0.00 4.02
29 30 0.838122 AGGTAGCTGCCAACTCACCT 60.838 55.000 23.78 9.24 0.00 4.00
30 31 0.674895 GGTAGCTGCCAACTCACCTG 60.675 60.000 16.95 0.00 0.00 4.00
31 32 0.321671 GTAGCTGCCAACTCACCTGA 59.678 55.000 0.00 0.00 0.00 3.86
42 43 0.528470 CTCACCTGAGTTCGAGTCCC 59.472 60.000 0.00 0.00 37.40 4.46
43 44 1.213013 CACCTGAGTTCGAGTCCCG 59.787 63.158 0.00 0.00 40.25 5.14
44 45 1.074423 ACCTGAGTTCGAGTCCCGA 59.926 57.895 0.00 0.00 46.94 5.14
55 56 3.885521 GTCCCGACTAGGACGCGG 61.886 72.222 12.47 8.16 46.57 6.46
56 57 4.415150 TCCCGACTAGGACGCGGT 62.415 66.667 12.47 0.00 45.00 5.68
57 58 4.189188 CCCGACTAGGACGCGGTG 62.189 72.222 12.47 0.00 45.00 4.94
58 59 4.849329 CCGACTAGGACGCGGTGC 62.849 72.222 12.47 0.95 45.00 5.01
59 60 3.812019 CGACTAGGACGCGGTGCT 61.812 66.667 12.47 9.52 38.00 4.40
60 61 2.102553 GACTAGGACGCGGTGCTC 59.897 66.667 12.47 0.00 35.47 4.26
61 62 3.736482 GACTAGGACGCGGTGCTCG 62.736 68.421 12.47 5.66 35.47 5.03
62 63 3.812019 CTAGGACGCGGTGCTCGT 61.812 66.667 12.47 2.64 43.49 4.18
69 70 2.665185 GCGGTGCTCGTGGAGTTT 60.665 61.111 2.43 0.00 41.72 2.66
70 71 2.668280 GCGGTGCTCGTGGAGTTTC 61.668 63.158 2.43 0.00 41.72 2.78
71 72 1.006102 CGGTGCTCGTGGAGTTTCT 60.006 57.895 0.00 0.00 31.39 2.52
72 73 1.009389 CGGTGCTCGTGGAGTTTCTC 61.009 60.000 0.00 0.00 31.39 2.87
104 105 4.528674 CCAACGAGAGGGCATCAG 57.471 61.111 0.58 0.00 0.00 2.90
105 106 1.599047 CCAACGAGAGGGCATCAGT 59.401 57.895 0.58 0.00 0.00 3.41
106 107 0.824109 CCAACGAGAGGGCATCAGTA 59.176 55.000 0.58 0.00 0.00 2.74
107 108 1.414181 CCAACGAGAGGGCATCAGTAT 59.586 52.381 0.58 0.00 0.00 2.12
108 109 2.477825 CAACGAGAGGGCATCAGTATG 58.522 52.381 0.58 0.00 36.09 2.39
125 126 4.333913 GTATGATGGATCAGACAGTGCT 57.666 45.455 9.08 0.00 45.60 4.40
126 127 2.975732 TGATGGATCAGACAGTGCTC 57.024 50.000 0.00 0.00 32.11 4.26
127 128 2.181975 TGATGGATCAGACAGTGCTCA 58.818 47.619 0.00 0.00 32.11 4.26
128 129 2.568509 TGATGGATCAGACAGTGCTCAA 59.431 45.455 0.00 0.00 32.11 3.02
129 130 2.756840 TGGATCAGACAGTGCTCAAG 57.243 50.000 0.00 0.00 0.00 3.02
130 131 1.973515 TGGATCAGACAGTGCTCAAGT 59.026 47.619 0.00 0.00 0.00 3.16
131 132 2.028658 TGGATCAGACAGTGCTCAAGTC 60.029 50.000 0.00 3.94 0.00 3.01
132 133 2.257894 GATCAGACAGTGCTCAAGTCG 58.742 52.381 0.00 3.01 37.36 4.18
133 134 0.315251 TCAGACAGTGCTCAAGTCGG 59.685 55.000 0.00 5.77 37.36 4.79
134 135 1.005630 AGACAGTGCTCAAGTCGGC 60.006 57.895 0.00 0.00 37.36 5.54
135 136 1.300931 GACAGTGCTCAAGTCGGCA 60.301 57.895 0.00 0.00 36.01 5.69
136 137 0.880278 GACAGTGCTCAAGTCGGCAA 60.880 55.000 0.00 0.00 40.26 4.52
137 138 0.250467 ACAGTGCTCAAGTCGGCAAT 60.250 50.000 0.00 0.00 40.26 3.56
138 139 0.167470 CAGTGCTCAAGTCGGCAATG 59.833 55.000 0.00 0.00 45.32 2.82
139 140 1.154150 GTGCTCAAGTCGGCAATGC 60.154 57.895 0.00 0.00 40.26 3.56
140 141 1.600356 TGCTCAAGTCGGCAATGCA 60.600 52.632 7.79 0.00 35.40 3.96
141 142 0.961857 TGCTCAAGTCGGCAATGCAT 60.962 50.000 7.79 0.00 35.40 3.96
142 143 0.171903 GCTCAAGTCGGCAATGCATT 59.828 50.000 5.99 5.99 0.00 3.56
143 144 1.796617 GCTCAAGTCGGCAATGCATTC 60.797 52.381 9.53 4.70 0.00 2.67
144 145 1.741706 CTCAAGTCGGCAATGCATTCT 59.258 47.619 9.53 0.00 0.00 2.40
145 146 2.938451 CTCAAGTCGGCAATGCATTCTA 59.062 45.455 9.53 0.00 0.00 2.10
146 147 3.544684 TCAAGTCGGCAATGCATTCTAT 58.455 40.909 9.53 0.00 0.00 1.98
147 148 3.561310 TCAAGTCGGCAATGCATTCTATC 59.439 43.478 9.53 0.00 0.00 2.08
148 149 2.498167 AGTCGGCAATGCATTCTATCC 58.502 47.619 9.53 7.62 0.00 2.59
149 150 2.158769 AGTCGGCAATGCATTCTATCCA 60.159 45.455 9.53 0.00 0.00 3.41
150 151 2.618241 GTCGGCAATGCATTCTATCCAA 59.382 45.455 9.53 0.00 0.00 3.53
151 152 3.254166 GTCGGCAATGCATTCTATCCAAT 59.746 43.478 9.53 0.00 0.00 3.16
152 153 3.253921 TCGGCAATGCATTCTATCCAATG 59.746 43.478 9.53 0.00 36.91 2.82
153 154 3.613193 CGGCAATGCATTCTATCCAATGG 60.613 47.826 9.53 0.00 34.75 3.16
154 155 3.323243 GCAATGCATTCTATCCAATGGC 58.677 45.455 9.53 1.99 34.75 4.40
155 156 3.863400 GCAATGCATTCTATCCAATGGCC 60.863 47.826 9.53 0.00 34.75 5.36
156 157 3.537795 ATGCATTCTATCCAATGGCCT 57.462 42.857 3.32 0.00 34.75 5.19
157 158 2.867624 TGCATTCTATCCAATGGCCTC 58.132 47.619 3.32 0.00 34.75 4.70
158 159 2.165998 GCATTCTATCCAATGGCCTCC 58.834 52.381 3.32 0.00 34.75 4.30
159 160 2.224967 GCATTCTATCCAATGGCCTCCT 60.225 50.000 3.32 0.00 34.75 3.69
160 161 3.683802 CATTCTATCCAATGGCCTCCTC 58.316 50.000 3.32 0.00 31.10 3.71
161 162 1.342074 TCTATCCAATGGCCTCCTCG 58.658 55.000 3.32 0.00 0.00 4.63
162 163 0.322975 CTATCCAATGGCCTCCTCGG 59.677 60.000 3.32 0.00 0.00 4.63
163 164 0.105194 TATCCAATGGCCTCCTCGGA 60.105 55.000 3.32 3.15 33.16 4.55
164 165 1.414061 ATCCAATGGCCTCCTCGGAG 61.414 60.000 3.32 5.97 41.63 4.63
165 166 2.203126 CAATGGCCTCCTCGGAGC 60.203 66.667 3.32 3.55 40.69 4.70
166 167 2.688666 AATGGCCTCCTCGGAGCA 60.689 61.111 3.32 1.92 40.69 4.26
167 168 3.036429 AATGGCCTCCTCGGAGCAC 62.036 63.158 3.32 3.24 40.69 4.40
169 170 4.459089 GGCCTCCTCGGAGCACAC 62.459 72.222 7.46 0.00 40.69 3.82
170 171 3.695606 GCCTCCTCGGAGCACACA 61.696 66.667 7.46 0.00 40.69 3.72
171 172 3.059982 CCTCCTCGGAGCACACAA 58.940 61.111 7.46 0.00 40.69 3.33
172 173 1.371183 CCTCCTCGGAGCACACAAA 59.629 57.895 7.46 0.00 40.69 2.83
173 174 0.036010 CCTCCTCGGAGCACACAAAT 60.036 55.000 7.46 0.00 40.69 2.32
174 175 1.611673 CCTCCTCGGAGCACACAAATT 60.612 52.381 7.46 0.00 40.69 1.82
175 176 2.154462 CTCCTCGGAGCACACAAATTT 58.846 47.619 0.00 0.00 35.31 1.82
176 177 2.151202 TCCTCGGAGCACACAAATTTC 58.849 47.619 0.00 0.00 0.00 2.17
177 178 1.879380 CCTCGGAGCACACAAATTTCA 59.121 47.619 0.00 0.00 0.00 2.69
178 179 2.350772 CCTCGGAGCACACAAATTTCAC 60.351 50.000 0.00 0.00 0.00 3.18
179 180 1.606668 TCGGAGCACACAAATTTCACC 59.393 47.619 0.00 0.00 0.00 4.02
180 181 1.608590 CGGAGCACACAAATTTCACCT 59.391 47.619 0.00 0.00 0.00 4.00
181 182 2.811431 CGGAGCACACAAATTTCACCTA 59.189 45.455 0.00 0.00 0.00 3.08
182 183 3.364964 CGGAGCACACAAATTTCACCTAC 60.365 47.826 0.00 0.00 0.00 3.18
183 184 3.568007 GGAGCACACAAATTTCACCTACA 59.432 43.478 0.00 0.00 0.00 2.74
184 185 4.537015 GAGCACACAAATTTCACCTACAC 58.463 43.478 0.00 0.00 0.00 2.90
185 186 3.951037 AGCACACAAATTTCACCTACACA 59.049 39.130 0.00 0.00 0.00 3.72
186 187 4.400884 AGCACACAAATTTCACCTACACAA 59.599 37.500 0.00 0.00 0.00 3.33
187 188 5.105554 AGCACACAAATTTCACCTACACAAA 60.106 36.000 0.00 0.00 0.00 2.83
188 189 5.752955 GCACACAAATTTCACCTACACAAAT 59.247 36.000 0.00 0.00 0.00 2.32
189 190 6.292274 GCACACAAATTTCACCTACACAAATG 60.292 38.462 0.00 0.00 0.00 2.32
190 191 6.977502 CACACAAATTTCACCTACACAAATGA 59.022 34.615 0.00 0.00 0.00 2.57
191 192 7.167968 CACACAAATTTCACCTACACAAATGAG 59.832 37.037 0.00 0.00 0.00 2.90
192 193 7.147915 ACACAAATTTCACCTACACAAATGAGT 60.148 33.333 0.00 0.00 0.00 3.41
193 194 7.706179 CACAAATTTCACCTACACAAATGAGTT 59.294 33.333 0.00 0.00 0.00 3.01
194 195 7.920682 ACAAATTTCACCTACACAAATGAGTTC 59.079 33.333 0.00 0.00 0.00 3.01
195 196 7.581213 AATTTCACCTACACAAATGAGTTCA 57.419 32.000 0.00 0.00 0.00 3.18
196 197 7.581213 ATTTCACCTACACAAATGAGTTCAA 57.419 32.000 0.00 0.00 0.00 2.69
197 198 7.397892 TTTCACCTACACAAATGAGTTCAAA 57.602 32.000 0.00 0.00 0.00 2.69
198 199 7.581213 TTCACCTACACAAATGAGTTCAAAT 57.419 32.000 0.00 0.00 0.00 2.32
199 200 7.202016 TCACCTACACAAATGAGTTCAAATC 57.798 36.000 0.00 0.00 0.00 2.17
200 201 6.206634 TCACCTACACAAATGAGTTCAAATCC 59.793 38.462 0.00 0.00 0.00 3.01
201 202 6.016360 CACCTACACAAATGAGTTCAAATCCA 60.016 38.462 0.00 0.00 0.00 3.41
202 203 6.207417 ACCTACACAAATGAGTTCAAATCCAG 59.793 38.462 0.00 0.00 0.00 3.86
203 204 6.430925 CCTACACAAATGAGTTCAAATCCAGA 59.569 38.462 0.00 0.00 0.00 3.86
204 205 6.713762 ACACAAATGAGTTCAAATCCAGAA 57.286 33.333 0.00 0.00 0.00 3.02
205 206 7.111247 ACACAAATGAGTTCAAATCCAGAAA 57.889 32.000 0.00 0.00 0.00 2.52
206 207 7.729116 ACACAAATGAGTTCAAATCCAGAAAT 58.271 30.769 0.00 0.00 0.00 2.17
207 208 8.859090 ACACAAATGAGTTCAAATCCAGAAATA 58.141 29.630 0.00 0.00 0.00 1.40
208 209 9.695526 CACAAATGAGTTCAAATCCAGAAATAA 57.304 29.630 0.00 0.00 0.00 1.40
211 212 8.937634 AATGAGTTCAAATCCAGAAATAATGC 57.062 30.769 0.00 0.00 0.00 3.56
212 213 6.554419 TGAGTTCAAATCCAGAAATAATGCG 58.446 36.000 0.00 0.00 0.00 4.73
213 214 6.374053 TGAGTTCAAATCCAGAAATAATGCGA 59.626 34.615 0.00 0.00 0.00 5.10
214 215 6.789262 AGTTCAAATCCAGAAATAATGCGAG 58.211 36.000 0.00 0.00 0.00 5.03
215 216 5.173774 TCAAATCCAGAAATAATGCGAGC 57.826 39.130 0.00 0.00 0.00 5.03
216 217 4.639755 TCAAATCCAGAAATAATGCGAGCA 59.360 37.500 0.00 0.00 0.00 4.26
217 218 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
218 219 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
219 220 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
220 221 2.423185 CCAGAAATAATGCGAGCACCAA 59.577 45.455 0.00 0.00 0.00 3.67
221 222 3.488047 CCAGAAATAATGCGAGCACCAAG 60.488 47.826 0.00 0.00 0.00 3.61
222 223 3.374988 CAGAAATAATGCGAGCACCAAGA 59.625 43.478 0.00 0.00 0.00 3.02
223 224 3.375299 AGAAATAATGCGAGCACCAAGAC 59.625 43.478 0.00 0.00 0.00 3.01
224 225 2.698855 ATAATGCGAGCACCAAGACT 57.301 45.000 0.00 0.00 0.00 3.24
225 226 2.472695 TAATGCGAGCACCAAGACTT 57.527 45.000 0.00 0.00 0.00 3.01
226 227 2.472695 AATGCGAGCACCAAGACTTA 57.527 45.000 0.00 0.00 0.00 2.24
227 228 2.472695 ATGCGAGCACCAAGACTTAA 57.527 45.000 0.00 0.00 0.00 1.85
228 229 2.248280 TGCGAGCACCAAGACTTAAA 57.752 45.000 0.00 0.00 0.00 1.52
229 230 1.871039 TGCGAGCACCAAGACTTAAAC 59.129 47.619 0.00 0.00 0.00 2.01
230 231 1.197036 GCGAGCACCAAGACTTAAACC 59.803 52.381 0.00 0.00 0.00 3.27
231 232 2.767505 CGAGCACCAAGACTTAAACCT 58.232 47.619 0.00 0.00 0.00 3.50
232 233 3.139077 CGAGCACCAAGACTTAAACCTT 58.861 45.455 0.00 0.00 0.00 3.50
233 234 3.058914 CGAGCACCAAGACTTAAACCTTG 60.059 47.826 8.69 8.69 39.43 3.61
234 235 4.134563 GAGCACCAAGACTTAAACCTTGA 58.865 43.478 14.60 0.00 41.56 3.02
235 236 3.883489 AGCACCAAGACTTAAACCTTGAC 59.117 43.478 14.60 6.89 41.56 3.18
236 237 3.303791 GCACCAAGACTTAAACCTTGACG 60.304 47.826 14.60 8.41 41.56 4.35
237 238 4.124238 CACCAAGACTTAAACCTTGACGA 58.876 43.478 14.60 0.00 41.56 4.20
238 239 4.211374 CACCAAGACTTAAACCTTGACGAG 59.789 45.833 14.60 4.52 41.56 4.18
239 240 4.141779 ACCAAGACTTAAACCTTGACGAGT 60.142 41.667 14.60 4.97 41.56 4.18
240 241 4.814771 CCAAGACTTAAACCTTGACGAGTT 59.185 41.667 14.60 0.00 41.56 3.01
241 242 5.296035 CCAAGACTTAAACCTTGACGAGTTT 59.704 40.000 14.60 0.00 41.56 2.66
242 243 6.480981 CCAAGACTTAAACCTTGACGAGTTTA 59.519 38.462 14.60 0.00 41.56 2.01
243 244 7.307219 CCAAGACTTAAACCTTGACGAGTTTAG 60.307 40.741 14.60 0.00 41.56 1.85
244 245 7.047460 AGACTTAAACCTTGACGAGTTTAGA 57.953 36.000 0.00 0.00 39.06 2.10
245 246 7.668492 AGACTTAAACCTTGACGAGTTTAGAT 58.332 34.615 0.00 0.00 39.06 1.98
246 247 8.800332 AGACTTAAACCTTGACGAGTTTAGATA 58.200 33.333 0.00 0.00 39.06 1.98
247 248 8.754230 ACTTAAACCTTGACGAGTTTAGATAC 57.246 34.615 0.00 0.00 39.06 2.24
248 249 7.816513 ACTTAAACCTTGACGAGTTTAGATACC 59.183 37.037 0.00 0.00 39.06 2.73
249 250 5.733620 AACCTTGACGAGTTTAGATACCA 57.266 39.130 0.00 0.00 0.00 3.25
250 251 5.326200 ACCTTGACGAGTTTAGATACCAG 57.674 43.478 0.00 0.00 0.00 4.00
251 252 4.771054 ACCTTGACGAGTTTAGATACCAGT 59.229 41.667 0.00 0.00 0.00 4.00
252 253 5.103000 CCTTGACGAGTTTAGATACCAGTG 58.897 45.833 0.00 0.00 0.00 3.66
253 254 5.336531 CCTTGACGAGTTTAGATACCAGTGT 60.337 44.000 0.00 0.00 0.00 3.55
254 255 5.306532 TGACGAGTTTAGATACCAGTGTC 57.693 43.478 0.00 0.00 0.00 3.67
255 256 4.157289 TGACGAGTTTAGATACCAGTGTCC 59.843 45.833 0.00 0.00 0.00 4.02
256 257 4.342359 ACGAGTTTAGATACCAGTGTCCT 58.658 43.478 0.00 0.00 0.00 3.85
257 258 4.398673 ACGAGTTTAGATACCAGTGTCCTC 59.601 45.833 0.00 0.00 0.00 3.71
258 259 4.202030 CGAGTTTAGATACCAGTGTCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
259 260 4.949121 AGTTTAGATACCAGTGTCCTCCT 58.051 43.478 0.00 0.00 0.00 3.69
260 261 6.088541 AGTTTAGATACCAGTGTCCTCCTA 57.911 41.667 0.00 0.00 0.00 2.94
261 262 6.500336 AGTTTAGATACCAGTGTCCTCCTAA 58.500 40.000 0.00 0.00 0.00 2.69
262 263 6.380560 AGTTTAGATACCAGTGTCCTCCTAAC 59.619 42.308 0.00 0.00 0.00 2.34
263 264 3.644335 AGATACCAGTGTCCTCCTAACC 58.356 50.000 0.00 0.00 0.00 2.85
264 265 3.012502 AGATACCAGTGTCCTCCTAACCA 59.987 47.826 0.00 0.00 0.00 3.67
265 266 2.344093 ACCAGTGTCCTCCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
266 267 2.188817 ACCAGTGTCCTCCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
267 268 1.486726 CCAGTGTCCTCCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
268 269 2.187958 CAGTGTCCTCCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
269 270 2.571653 CAGTGTCCTCCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
270 271 2.572104 AGTGTCCTCCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
271 272 1.913419 TGTCCTCCTAACCATCCAACC 59.087 52.381 0.00 0.00 0.00 3.77
272 273 1.913419 GTCCTCCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
273 274 1.913419 TCCTCCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
274 275 1.633432 CCTCCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
275 276 2.242196 CCTCCTAACCATCCAACCACAT 59.758 50.000 0.00 0.00 0.00 3.21
276 277 3.458118 CCTCCTAACCATCCAACCACATA 59.542 47.826 0.00 0.00 0.00 2.29
277 278 4.104738 CCTCCTAACCATCCAACCACATAT 59.895 45.833 0.00 0.00 0.00 1.78
278 279 5.399038 CCTCCTAACCATCCAACCACATATT 60.399 44.000 0.00 0.00 0.00 1.28
279 280 6.086011 TCCTAACCATCCAACCACATATTT 57.914 37.500 0.00 0.00 0.00 1.40
280 281 6.498538 TCCTAACCATCCAACCACATATTTT 58.501 36.000 0.00 0.00 0.00 1.82
281 282 6.957020 TCCTAACCATCCAACCACATATTTTT 59.043 34.615 0.00 0.00 0.00 1.94
322 323 9.538508 CGCATCTCATCATTTATATCATAAGGA 57.461 33.333 0.00 0.00 0.00 3.36
341 342 8.565416 CATAAGGATCATAGTACAAGTCACGTA 58.435 37.037 0.00 0.00 0.00 3.57
344 345 6.546403 AGGATCATAGTACAAGTCACGTACAT 59.454 38.462 0.00 0.00 41.40 2.29
362 363 4.977741 ACATAACGACGTGGTAAAACTG 57.022 40.909 2.83 0.55 0.00 3.16
371 372 5.479716 ACGTGGTAAAACTGAAAAGACAG 57.520 39.130 0.00 0.00 42.78 3.51
374 375 5.646606 GTGGTAAAACTGAAAAGACAGCAA 58.353 37.500 0.00 0.00 41.06 3.91
377 378 6.588373 TGGTAAAACTGAAAAGACAGCAAAAC 59.412 34.615 0.00 0.00 41.06 2.43
379 380 2.797491 ACTGAAAAGACAGCAAAACGC 58.203 42.857 0.00 0.00 41.06 4.84
391 392 2.044135 GCAAAACGCTAGTCTTTGCAC 58.956 47.619 22.53 5.13 44.28 4.57
442 443 9.945904 ATTATAAATAAGACCGAAGAATCCTCC 57.054 33.333 0.00 0.00 0.00 4.30
443 444 5.693769 AAATAAGACCGAAGAATCCTCCA 57.306 39.130 0.00 0.00 0.00 3.86
445 446 3.618690 AAGACCGAAGAATCCTCCAAG 57.381 47.619 0.00 0.00 0.00 3.61
455 456 5.441718 AGAATCCTCCAAGCTTCAATACA 57.558 39.130 0.00 0.00 0.00 2.29
467 468 7.172190 CCAAGCTTCAATACAGACTACATATGG 59.828 40.741 7.80 0.00 0.00 2.74
481 482 9.015367 AGACTACATATGGATATATATGGACGC 57.985 37.037 7.80 0.00 42.59 5.19
484 485 9.578439 CTACATATGGATATATATGGACGCATG 57.422 37.037 7.80 0.00 42.59 4.06
503 504 6.095021 ACGCATGTTAGAGTGTAGATTCACTA 59.905 38.462 0.00 0.00 46.81 2.74
504 505 6.972901 CGCATGTTAGAGTGTAGATTCACTAA 59.027 38.462 0.00 0.00 46.81 2.24
517 518 8.653338 TGTAGATTCACTAATTTTGCTTCGTAC 58.347 33.333 0.00 0.00 32.49 3.67
519 520 5.910637 TTCACTAATTTTGCTTCGTACGT 57.089 34.783 16.05 0.00 0.00 3.57
523 524 6.306356 TCACTAATTTTGCTTCGTACGTAGTC 59.694 38.462 20.85 14.22 43.93 2.59
529 530 8.725212 ATTTTGCTTCGTACGTAGTCTATATC 57.275 34.615 20.85 5.37 43.93 1.63
531 532 6.463483 TGCTTCGTACGTAGTCTATATCAG 57.537 41.667 20.85 0.00 43.93 2.90
536 537 7.824704 TCGTACGTAGTCTATATCAGAATCC 57.175 40.000 16.05 0.00 43.93 3.01
545 546 8.480133 AGTCTATATCAGAATCCGTAAAAGGT 57.520 34.615 0.00 0.00 34.17 3.50
546 547 8.361139 AGTCTATATCAGAATCCGTAAAAGGTG 58.639 37.037 0.00 0.00 34.17 4.00
581 600 7.039784 TGGCTAGACTTGTTTGCAAATATTTCT 60.040 33.333 16.21 17.35 33.73 2.52
582 601 7.814587 GGCTAGACTTGTTTGCAAATATTTCTT 59.185 33.333 16.21 2.08 33.73 2.52
583 602 8.642020 GCTAGACTTGTTTGCAAATATTTCTTG 58.358 33.333 16.21 16.46 33.73 3.02
584 603 9.897744 CTAGACTTGTTTGCAAATATTTCTTGA 57.102 29.630 16.21 3.11 33.73 3.02
585 604 8.579682 AGACTTGTTTGCAAATATTTCTTGAC 57.420 30.769 16.21 0.00 33.73 3.18
603 622 6.100004 TCTTGACTATCTGATTGGACGTTTC 58.900 40.000 0.00 0.00 0.00 2.78
604 623 4.755411 TGACTATCTGATTGGACGTTTCC 58.245 43.478 0.00 0.00 43.19 3.13
605 624 4.120589 GACTATCTGATTGGACGTTTCCC 58.879 47.826 0.00 0.00 42.01 3.97
689 711 9.274065 GACAGAGTAAAACTAAACAAACACTTG 57.726 33.333 0.00 0.00 38.61 3.16
766 788 4.557205 ACATTGAACACGACTAGAACTCC 58.443 43.478 0.00 0.00 0.00 3.85
767 789 4.038763 ACATTGAACACGACTAGAACTCCA 59.961 41.667 0.00 0.00 0.00 3.86
768 790 3.637998 TGAACACGACTAGAACTCCAC 57.362 47.619 0.00 0.00 0.00 4.02
769 791 2.031420 TGAACACGACTAGAACTCCACG 60.031 50.000 0.00 0.00 0.00 4.94
770 792 1.602311 ACACGACTAGAACTCCACGT 58.398 50.000 0.00 0.00 34.40 4.49
771 793 1.952296 ACACGACTAGAACTCCACGTT 59.048 47.619 0.00 0.00 38.91 3.99
781 803 3.660865 GAACTCCACGTTCCATGTTAGT 58.339 45.455 0.00 0.00 45.00 2.24
782 804 3.040147 ACTCCACGTTCCATGTTAGTG 57.960 47.619 0.00 0.00 0.00 2.74
783 805 1.732259 CTCCACGTTCCATGTTAGTGC 59.268 52.381 0.00 0.00 0.00 4.40
964 4238 3.501950 GATTCGATCAAACTGCAAACCC 58.498 45.455 0.00 0.00 0.00 4.11
990 4264 0.389757 CGCTAGCTAAACCCTCTCCC 59.610 60.000 13.93 0.00 0.00 4.30
1155 4429 1.582968 CTCTTCCGAACCCGACGAA 59.417 57.895 0.00 0.00 38.22 3.85
1282 4559 2.146342 CGGATGTGATATTCTGGGTGC 58.854 52.381 0.00 0.00 0.00 5.01
1305 4582 0.662374 TCGTCGGTCTCGTTTTGCTC 60.662 55.000 0.00 0.00 37.69 4.26
1317 4594 1.911293 TTTTGCTCATCGCTGCCGTC 61.911 55.000 0.00 0.00 40.11 4.79
1395 4672 3.445450 TCCCGATCTTCTTCAGTTCAGAG 59.555 47.826 0.00 0.00 0.00 3.35
1396 4673 3.186119 CCGATCTTCTTCAGTTCAGAGC 58.814 50.000 0.00 0.00 0.00 4.09
1397 4674 3.367806 CCGATCTTCTTCAGTTCAGAGCA 60.368 47.826 0.00 0.00 0.00 4.26
1398 4675 3.858812 CGATCTTCTTCAGTTCAGAGCAG 59.141 47.826 0.00 0.00 0.00 4.24
1399 4676 3.037431 TCTTCTTCAGTTCAGAGCAGC 57.963 47.619 0.00 0.00 0.00 5.25
1419 4696 1.728971 CGCAGCAGTTTACCTCTCTTG 59.271 52.381 0.00 0.00 0.00 3.02
1466 4751 6.237901 AGTGGTAGTTAATGCAAGTCAATGA 58.762 36.000 0.00 0.00 0.00 2.57
1500 4785 6.128309 ACAATTTCAGGTTGCTTTTTGTTCAC 60.128 34.615 0.00 0.00 0.00 3.18
1502 4787 2.159310 TCAGGTTGCTTTTTGTTCACGG 60.159 45.455 0.00 0.00 0.00 4.94
1657 4942 2.092914 GGCTCTGGGTACTTTGCTGTAT 60.093 50.000 0.00 0.00 0.00 2.29
2005 5298 9.847706 CTCGACAAATATGTAAGAGCATAGTAT 57.152 33.333 0.00 0.00 40.74 2.12
2116 5414 5.206587 ACTGTAACTATTCCGGATACAGGT 58.793 41.667 31.23 19.74 44.79 4.00
2123 5421 1.855295 TCCGGATACAGGTGCACTAA 58.145 50.000 17.98 0.00 0.00 2.24
2644 5974 5.903010 AGTAAATTGTTTCCAGAAAAGGGGT 59.097 36.000 0.00 0.00 31.33 4.95
2976 6315 7.278868 CCAGTTGTCTAATTGAGATTAGTGGAC 59.721 40.741 6.18 0.00 43.39 4.02
3049 6388 6.603237 AATTACCTTTTTGTGCTTGCTTTC 57.397 33.333 0.00 0.00 0.00 2.62
3162 6501 5.047306 CCTCATAATGATTACTAGGACGGCA 60.047 44.000 8.32 0.00 0.00 5.69
3172 6511 2.885113 GGACGGCATCCTTTTGGC 59.115 61.111 0.00 0.00 45.22 4.52
3339 6678 7.911205 CACCTCTTGTATTTTGACGTTTGTTTA 59.089 33.333 0.00 0.00 0.00 2.01
3522 6892 9.031537 ACCGGAATTTTGTATCCTTCTATTTTT 57.968 29.630 9.46 0.00 33.36 1.94
3547 6917 2.534298 CATGCAGGAGAGAGTACAACG 58.466 52.381 0.00 0.00 0.00 4.10
3584 6954 2.290641 ACCCATACAAAAGATGGCACGA 60.291 45.455 0.00 0.00 42.29 4.35
3587 6957 2.851263 TACAAAAGATGGCACGACCT 57.149 45.000 0.00 0.00 40.22 3.85
3647 7017 6.344500 ACATCAACATCATAGAGAGGTCAAC 58.656 40.000 0.00 0.00 41.04 3.18
3648 7018 6.155910 ACATCAACATCATAGAGAGGTCAACT 59.844 38.462 0.00 0.00 41.04 3.16
3649 7019 5.970592 TCAACATCATAGAGAGGTCAACTG 58.029 41.667 0.00 0.00 41.04 3.16
3650 7020 5.481824 TCAACATCATAGAGAGGTCAACTGT 59.518 40.000 0.00 0.00 41.04 3.55
3651 7021 5.336150 ACATCATAGAGAGGTCAACTGTG 57.664 43.478 0.00 0.00 36.29 3.66
3652 7022 5.019470 ACATCATAGAGAGGTCAACTGTGA 58.981 41.667 0.00 0.00 36.29 3.58
3682 7052 0.788391 GCCTAAACACGAGTCAACCG 59.212 55.000 0.00 0.00 0.00 4.44
3691 7061 0.163788 CGAGTCAACCGCAACATGAC 59.836 55.000 0.00 0.00 42.91 3.06
3692 7062 0.517316 GAGTCAACCGCAACATGACC 59.483 55.000 0.00 0.00 43.46 4.02
3693 7063 0.108585 AGTCAACCGCAACATGACCT 59.891 50.000 0.00 0.00 43.46 3.85
3694 7064 1.346395 AGTCAACCGCAACATGACCTA 59.654 47.619 0.00 0.00 43.46 3.08
3695 7065 1.732259 GTCAACCGCAACATGACCTAG 59.268 52.381 0.00 0.00 37.97 3.02
3696 7066 1.621317 TCAACCGCAACATGACCTAGA 59.379 47.619 0.00 0.00 0.00 2.43
3697 7067 2.002586 CAACCGCAACATGACCTAGAG 58.997 52.381 0.00 0.00 0.00 2.43
3698 7068 1.557099 ACCGCAACATGACCTAGAGA 58.443 50.000 0.00 0.00 0.00 3.10
3699 7069 1.204941 ACCGCAACATGACCTAGAGAC 59.795 52.381 0.00 0.00 0.00 3.36
3700 7070 1.550065 CGCAACATGACCTAGAGACG 58.450 55.000 0.00 0.00 0.00 4.18
3701 7071 1.132453 CGCAACATGACCTAGAGACGA 59.868 52.381 0.00 0.00 0.00 4.20
3702 7072 2.223595 CGCAACATGACCTAGAGACGAT 60.224 50.000 0.00 0.00 0.00 3.73
3703 7073 3.735208 CGCAACATGACCTAGAGACGATT 60.735 47.826 0.00 0.00 0.00 3.34
3704 7074 4.497507 CGCAACATGACCTAGAGACGATTA 60.498 45.833 0.00 0.00 0.00 1.75
3705 7075 5.348986 GCAACATGACCTAGAGACGATTAA 58.651 41.667 0.00 0.00 0.00 1.40
3706 7076 5.232414 GCAACATGACCTAGAGACGATTAAC 59.768 44.000 0.00 0.00 0.00 2.01
3707 7077 6.330278 CAACATGACCTAGAGACGATTAACA 58.670 40.000 0.00 0.00 0.00 2.41
3708 7078 5.892568 ACATGACCTAGAGACGATTAACAC 58.107 41.667 0.00 0.00 0.00 3.32
3709 7079 4.611310 TGACCTAGAGACGATTAACACG 57.389 45.455 0.00 2.96 0.00 4.49
3710 7080 4.256110 TGACCTAGAGACGATTAACACGA 58.744 43.478 10.17 0.00 34.70 4.35
3711 7081 4.093998 TGACCTAGAGACGATTAACACGAC 59.906 45.833 10.17 4.97 34.70 4.34
3712 7082 3.063180 ACCTAGAGACGATTAACACGACG 59.937 47.826 10.17 0.00 34.70 5.12
3713 7083 3.308053 CCTAGAGACGATTAACACGACGA 59.692 47.826 0.00 0.00 34.70 4.20
3714 7084 4.025061 CCTAGAGACGATTAACACGACGAT 60.025 45.833 0.00 0.00 34.70 3.73
3715 7085 3.681855 AGAGACGATTAACACGACGATG 58.318 45.455 0.00 0.00 34.70 3.84
3716 7086 3.373130 AGAGACGATTAACACGACGATGA 59.627 43.478 0.00 0.00 34.70 2.92
3717 7087 3.423571 AGACGATTAACACGACGATGAC 58.576 45.455 0.00 0.00 34.70 3.06
3718 7088 2.171567 ACGATTAACACGACGATGACG 58.828 47.619 0.00 0.73 45.75 4.35
3719 7089 2.159667 ACGATTAACACGACGATGACGA 60.160 45.455 0.00 0.00 43.06 4.20
3720 7090 2.459324 CGATTAACACGACGATGACGAG 59.541 50.000 0.00 0.00 42.66 4.18
3721 7091 2.975410 TTAACACGACGATGACGAGT 57.025 45.000 0.00 0.00 42.66 4.18
3722 7092 2.236741 TAACACGACGATGACGAGTG 57.763 50.000 0.00 15.69 46.70 3.51
3723 7093 0.589708 AACACGACGATGACGAGTGA 59.410 50.000 20.64 0.00 45.53 3.41
3724 7094 0.110328 ACACGACGATGACGAGTGAC 60.110 55.000 20.64 0.00 45.53 3.67
3725 7095 0.110373 CACGACGATGACGAGTGACA 60.110 55.000 0.00 0.00 45.53 3.58
3726 7096 0.803117 ACGACGATGACGAGTGACAT 59.197 50.000 0.00 0.00 42.66 3.06
3727 7097 1.202043 ACGACGATGACGAGTGACATC 60.202 52.381 0.00 0.00 41.77 3.06
3728 7098 1.202031 CGACGATGACGAGTGACATCA 60.202 52.381 0.00 0.00 44.23 3.07
3729 7099 2.177977 GACGATGACGAGTGACATCAC 58.822 52.381 3.72 3.72 44.23 3.06
3730 7100 1.539827 ACGATGACGAGTGACATCACA 59.460 47.619 14.23 0.00 44.23 3.58
3731 7101 2.414691 ACGATGACGAGTGACATCACAG 60.415 50.000 14.23 9.76 44.23 3.66
3732 7102 4.667090 ACGATGACGAGTGACATCACAGA 61.667 47.826 14.23 0.00 44.23 3.41
3733 7103 6.435479 ACGATGACGAGTGACATCACAGAG 62.435 50.000 14.23 7.20 44.23 3.35
3740 7110 2.344950 GTGACATCACAGAGCAAGAGG 58.655 52.381 7.15 0.00 45.75 3.69
3741 7111 1.338484 TGACATCACAGAGCAAGAGGC 60.338 52.381 0.00 0.00 45.30 4.70
3847 7217 1.004745 AGAAGGTCATGCCCGAACATT 59.995 47.619 2.95 0.00 38.26 2.71
3868 7238 3.699413 TGATGATGAAGCCAAATGACCA 58.301 40.909 0.00 0.00 0.00 4.02
3897 7267 0.798776 CCAATGAGCACTCGACCAAC 59.201 55.000 0.00 0.00 0.00 3.77
3931 8223 2.740055 GCGCTGGATATGAGCCGG 60.740 66.667 0.00 0.00 32.41 6.13
3951 8243 1.212616 CGAGACGATGCTCCAAATCC 58.787 55.000 0.00 0.00 0.00 3.01
3952 8244 1.212616 GAGACGATGCTCCAAATCCG 58.787 55.000 0.00 0.00 0.00 4.18
3957 8249 1.471501 CGATGCTCCAAATCCGACAGA 60.472 52.381 0.00 0.00 0.00 3.41
3987 8279 0.108615 GATATGGCCGAGGATGACCG 60.109 60.000 0.00 0.00 41.83 4.79
4021 8313 1.553690 AAGTCGGGGTCAGTGGATGG 61.554 60.000 0.00 0.00 0.00 3.51
4026 8318 0.988145 GGGGTCAGTGGATGGGATGA 60.988 60.000 0.00 0.00 0.00 2.92
4027 8319 0.918983 GGGTCAGTGGATGGGATGAA 59.081 55.000 0.00 0.00 0.00 2.57
4028 8320 1.133976 GGGTCAGTGGATGGGATGAAG 60.134 57.143 0.00 0.00 0.00 3.02
4051 8343 1.299468 CTCGACGCTGCCATAGACC 60.299 63.158 0.00 0.00 0.00 3.85
4101 8393 1.067283 CCACACTGAGGTGCTAGTGAG 60.067 57.143 10.95 3.50 45.46 3.51
4112 8404 0.397254 GCTAGTGAGAGGGGCTACCA 60.397 60.000 0.97 0.00 43.89 3.25
4139 8431 1.735376 GACGAGGAGCTCCGGCATTA 61.735 60.000 26.95 0.00 42.08 1.90
4144 8436 0.946221 GGAGCTCCGGCATTACATCG 60.946 60.000 19.06 0.00 41.70 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.139947 GCAGCTACCTCGACTGTCC 59.860 63.158 1.55 0.00 33.87 4.02
2 3 1.139947 GGCAGCTACCTCGACTGTC 59.860 63.158 0.00 0.00 33.87 3.51
3 4 1.185618 TTGGCAGCTACCTCGACTGT 61.186 55.000 4.19 0.00 33.87 3.55
4 5 0.737715 GTTGGCAGCTACCTCGACTG 60.738 60.000 4.19 0.00 34.48 3.51
5 6 0.900647 AGTTGGCAGCTACCTCGACT 60.901 55.000 0.52 3.20 0.00 4.18
6 7 0.458716 GAGTTGGCAGCTACCTCGAC 60.459 60.000 3.05 0.84 0.00 4.20
7 8 0.898326 TGAGTTGGCAGCTACCTCGA 60.898 55.000 3.05 0.00 0.00 4.04
8 9 0.737715 GTGAGTTGGCAGCTACCTCG 60.738 60.000 3.05 0.00 0.00 4.63
9 10 0.391793 GGTGAGTTGGCAGCTACCTC 60.392 60.000 3.05 0.00 33.68 3.85
10 11 0.838122 AGGTGAGTTGGCAGCTACCT 60.838 55.000 19.25 19.25 44.11 3.08
11 12 0.674895 CAGGTGAGTTGGCAGCTACC 60.675 60.000 3.05 11.98 44.12 3.18
12 13 0.321671 TCAGGTGAGTTGGCAGCTAC 59.678 55.000 3.05 3.38 44.12 3.58
13 14 0.610174 CTCAGGTGAGTTGGCAGCTA 59.390 55.000 3.05 0.00 44.12 3.32
14 15 1.374190 CTCAGGTGAGTTGGCAGCT 59.626 57.895 2.56 2.56 46.63 4.24
15 16 3.978272 CTCAGGTGAGTTGGCAGC 58.022 61.111 0.00 0.00 37.40 5.25
23 24 3.139582 CGGGACTCGAACTCAGGTGAG 62.140 61.905 5.40 5.40 43.85 3.51
24 25 1.241990 CGGGACTCGAACTCAGGTGA 61.242 60.000 0.00 0.00 42.43 4.02
25 26 1.213013 CGGGACTCGAACTCAGGTG 59.787 63.158 0.00 0.00 42.43 4.00
26 27 1.074423 TCGGGACTCGAACTCAGGT 59.926 57.895 0.00 0.00 45.86 4.00
27 28 3.998156 TCGGGACTCGAACTCAGG 58.002 61.111 0.00 0.00 45.86 3.86
39 40 4.415150 ACCGCGTCCTAGTCGGGA 62.415 66.667 18.08 0.00 46.78 5.14
40 41 4.189188 CACCGCGTCCTAGTCGGG 62.189 72.222 4.92 12.30 46.78 5.14
42 43 3.736482 GAGCACCGCGTCCTAGTCG 62.736 68.421 4.92 1.07 0.00 4.18
43 44 2.102553 GAGCACCGCGTCCTAGTC 59.897 66.667 4.92 0.00 0.00 2.59
44 45 3.812019 CGAGCACCGCGTCCTAGT 61.812 66.667 4.92 0.00 0.00 2.57
45 46 3.812019 ACGAGCACCGCGTCCTAG 61.812 66.667 4.92 0.85 43.32 3.02
46 47 4.111016 CACGAGCACCGCGTCCTA 62.111 66.667 4.92 0.00 37.87 2.94
52 53 2.665185 AAACTCCACGAGCACCGC 60.665 61.111 0.00 0.00 43.32 5.68
53 54 1.006102 AGAAACTCCACGAGCACCG 60.006 57.895 0.00 0.00 45.44 4.94
54 55 2.828933 GAGAAACTCCACGAGCACC 58.171 57.895 0.00 0.00 32.04 5.01
87 88 0.824109 TACTGATGCCCTCTCGTTGG 59.176 55.000 0.00 0.00 0.00 3.77
88 89 2.101415 TCATACTGATGCCCTCTCGTTG 59.899 50.000 0.00 0.00 32.62 4.10
89 90 2.388735 TCATACTGATGCCCTCTCGTT 58.611 47.619 0.00 0.00 32.62 3.85
90 91 2.073252 TCATACTGATGCCCTCTCGT 57.927 50.000 0.00 0.00 32.62 4.18
91 92 2.956913 CATCATACTGATGCCCTCTCG 58.043 52.381 4.33 0.00 46.37 4.04
100 101 5.511031 GCACTGTCTGATCCATCATACTGAT 60.511 44.000 14.80 0.00 37.65 2.90
101 102 4.202192 GCACTGTCTGATCCATCATACTGA 60.202 45.833 14.80 0.00 36.79 3.41
102 103 4.056740 GCACTGTCTGATCCATCATACTG 58.943 47.826 9.19 9.19 38.17 2.74
103 104 3.966006 AGCACTGTCTGATCCATCATACT 59.034 43.478 6.63 0.00 35.61 2.12
104 105 4.202192 TGAGCACTGTCTGATCCATCATAC 60.202 45.833 0.00 0.00 34.05 2.39
105 106 3.962718 TGAGCACTGTCTGATCCATCATA 59.037 43.478 0.00 0.00 34.05 2.15
106 107 2.770232 TGAGCACTGTCTGATCCATCAT 59.230 45.455 0.00 0.00 34.05 2.45
107 108 2.181975 TGAGCACTGTCTGATCCATCA 58.818 47.619 0.00 0.00 34.05 3.07
108 109 2.975732 TGAGCACTGTCTGATCCATC 57.024 50.000 0.00 0.00 34.05 3.51
109 110 2.570752 ACTTGAGCACTGTCTGATCCAT 59.429 45.455 0.00 0.00 34.05 3.41
110 111 1.973515 ACTTGAGCACTGTCTGATCCA 59.026 47.619 0.00 0.00 34.05 3.41
111 112 2.615869 GACTTGAGCACTGTCTGATCC 58.384 52.381 0.00 0.00 34.05 3.36
112 113 2.257894 CGACTTGAGCACTGTCTGATC 58.742 52.381 0.00 0.00 35.69 2.92
113 114 1.067283 CCGACTTGAGCACTGTCTGAT 60.067 52.381 0.00 0.00 0.00 2.90
114 115 0.315251 CCGACTTGAGCACTGTCTGA 59.685 55.000 0.00 0.00 0.00 3.27
115 116 1.287730 GCCGACTTGAGCACTGTCTG 61.288 60.000 0.00 0.00 0.00 3.51
116 117 1.005630 GCCGACTTGAGCACTGTCT 60.006 57.895 0.00 0.00 0.00 3.41
117 118 0.880278 TTGCCGACTTGAGCACTGTC 60.880 55.000 0.00 0.00 39.10 3.51
118 119 0.250467 ATTGCCGACTTGAGCACTGT 60.250 50.000 0.00 0.00 39.10 3.55
119 120 0.167470 CATTGCCGACTTGAGCACTG 59.833 55.000 0.00 0.00 39.10 3.66
120 121 1.580845 GCATTGCCGACTTGAGCACT 61.581 55.000 0.00 0.00 39.10 4.40
121 122 1.154150 GCATTGCCGACTTGAGCAC 60.154 57.895 0.00 0.00 39.10 4.40
122 123 0.961857 ATGCATTGCCGACTTGAGCA 60.962 50.000 6.12 0.00 37.18 4.26
123 124 0.171903 AATGCATTGCCGACTTGAGC 59.828 50.000 12.09 0.00 0.00 4.26
124 125 1.741706 AGAATGCATTGCCGACTTGAG 59.258 47.619 18.59 0.00 0.00 3.02
125 126 1.825090 AGAATGCATTGCCGACTTGA 58.175 45.000 18.59 0.00 0.00 3.02
126 127 3.304257 GGATAGAATGCATTGCCGACTTG 60.304 47.826 18.59 0.00 0.00 3.16
127 128 2.880890 GGATAGAATGCATTGCCGACTT 59.119 45.455 18.59 0.00 0.00 3.01
128 129 2.158769 TGGATAGAATGCATTGCCGACT 60.159 45.455 18.59 9.70 0.00 4.18
129 130 2.221169 TGGATAGAATGCATTGCCGAC 58.779 47.619 18.59 1.32 0.00 4.79
130 131 2.636647 TGGATAGAATGCATTGCCGA 57.363 45.000 18.59 0.00 0.00 5.54
131 132 3.571571 CATTGGATAGAATGCATTGCCG 58.428 45.455 18.59 0.00 0.00 5.69
132 133 3.863400 GCCATTGGATAGAATGCATTGCC 60.863 47.826 18.59 12.73 32.76 4.52
133 134 3.323243 GCCATTGGATAGAATGCATTGC 58.677 45.455 18.59 8.63 32.76 3.56
134 135 3.576982 AGGCCATTGGATAGAATGCATTG 59.423 43.478 18.59 0.00 32.77 2.82
135 136 3.830755 GAGGCCATTGGATAGAATGCATT 59.169 43.478 12.83 12.83 32.77 3.56
136 137 3.428532 GAGGCCATTGGATAGAATGCAT 58.571 45.455 5.01 0.00 32.77 3.96
137 138 2.489619 GGAGGCCATTGGATAGAATGCA 60.490 50.000 5.01 0.00 32.77 3.96
138 139 2.165998 GGAGGCCATTGGATAGAATGC 58.834 52.381 5.01 0.00 32.77 3.56
139 140 3.683802 GAGGAGGCCATTGGATAGAATG 58.316 50.000 5.01 0.00 33.74 2.67
140 141 2.304180 CGAGGAGGCCATTGGATAGAAT 59.696 50.000 5.01 0.00 0.00 2.40
141 142 1.694150 CGAGGAGGCCATTGGATAGAA 59.306 52.381 5.01 0.00 0.00 2.10
142 143 1.342074 CGAGGAGGCCATTGGATAGA 58.658 55.000 5.01 0.00 0.00 1.98
143 144 0.322975 CCGAGGAGGCCATTGGATAG 59.677 60.000 5.01 0.00 0.00 2.08
144 145 0.105194 TCCGAGGAGGCCATTGGATA 60.105 55.000 5.01 0.00 40.77 2.59
145 146 1.384502 TCCGAGGAGGCCATTGGAT 60.385 57.895 5.01 0.00 40.77 3.41
146 147 2.040442 TCCGAGGAGGCCATTGGA 59.960 61.111 5.01 6.50 40.77 3.53
147 148 2.507944 CTCCGAGGAGGCCATTGG 59.492 66.667 5.01 3.79 40.77 3.16
148 149 2.203126 GCTCCGAGGAGGCCATTG 60.203 66.667 19.64 0.00 42.19 2.82
149 150 2.688666 TGCTCCGAGGAGGCCATT 60.689 61.111 19.64 0.00 42.19 3.16
150 151 3.474570 GTGCTCCGAGGAGGCCAT 61.475 66.667 19.64 0.00 42.19 4.40
152 153 4.459089 GTGTGCTCCGAGGAGGCC 62.459 72.222 19.64 0.00 42.19 5.19
153 154 2.731691 TTTGTGTGCTCCGAGGAGGC 62.732 60.000 19.64 12.54 42.19 4.70
154 155 0.036010 ATTTGTGTGCTCCGAGGAGG 60.036 55.000 19.64 3.20 42.19 4.30
155 156 1.813513 AATTTGTGTGCTCCGAGGAG 58.186 50.000 14.53 14.53 44.56 3.69
156 157 2.151202 GAAATTTGTGTGCTCCGAGGA 58.849 47.619 0.00 0.00 0.00 3.71
157 158 1.879380 TGAAATTTGTGTGCTCCGAGG 59.121 47.619 0.00 0.00 0.00 4.63
158 159 2.350772 GGTGAAATTTGTGTGCTCCGAG 60.351 50.000 0.00 0.00 0.00 4.63
159 160 1.606668 GGTGAAATTTGTGTGCTCCGA 59.393 47.619 0.00 0.00 0.00 4.55
160 161 1.608590 AGGTGAAATTTGTGTGCTCCG 59.391 47.619 0.00 0.00 0.00 4.63
161 162 3.568007 TGTAGGTGAAATTTGTGTGCTCC 59.432 43.478 0.00 0.00 0.00 4.70
162 163 4.036262 TGTGTAGGTGAAATTTGTGTGCTC 59.964 41.667 0.00 0.00 0.00 4.26
163 164 3.951037 TGTGTAGGTGAAATTTGTGTGCT 59.049 39.130 0.00 0.00 0.00 4.40
164 165 4.300189 TGTGTAGGTGAAATTTGTGTGC 57.700 40.909 0.00 0.00 0.00 4.57
165 166 6.977502 TCATTTGTGTAGGTGAAATTTGTGTG 59.022 34.615 0.00 0.00 0.00 3.82
166 167 7.106439 TCATTTGTGTAGGTGAAATTTGTGT 57.894 32.000 0.00 0.00 0.00 3.72
167 168 7.202526 ACTCATTTGTGTAGGTGAAATTTGTG 58.797 34.615 0.00 0.00 0.00 3.33
168 169 7.346751 ACTCATTTGTGTAGGTGAAATTTGT 57.653 32.000 0.00 0.00 0.00 2.83
169 170 7.920151 TGAACTCATTTGTGTAGGTGAAATTTG 59.080 33.333 0.00 0.00 0.00 2.32
170 171 8.006298 TGAACTCATTTGTGTAGGTGAAATTT 57.994 30.769 0.00 0.00 0.00 1.82
171 172 7.581213 TGAACTCATTTGTGTAGGTGAAATT 57.419 32.000 0.00 0.00 0.00 1.82
172 173 7.581213 TTGAACTCATTTGTGTAGGTGAAAT 57.419 32.000 0.00 0.00 0.00 2.17
173 174 7.397892 TTTGAACTCATTTGTGTAGGTGAAA 57.602 32.000 0.00 0.00 0.00 2.69
174 175 7.255451 GGATTTGAACTCATTTGTGTAGGTGAA 60.255 37.037 0.00 0.00 0.00 3.18
175 176 6.206634 GGATTTGAACTCATTTGTGTAGGTGA 59.793 38.462 0.00 0.00 0.00 4.02
176 177 6.016360 TGGATTTGAACTCATTTGTGTAGGTG 60.016 38.462 0.00 0.00 0.00 4.00
177 178 6.068010 TGGATTTGAACTCATTTGTGTAGGT 58.932 36.000 0.00 0.00 0.00 3.08
178 179 6.430925 TCTGGATTTGAACTCATTTGTGTAGG 59.569 38.462 0.00 0.00 0.00 3.18
179 180 7.439157 TCTGGATTTGAACTCATTTGTGTAG 57.561 36.000 0.00 0.00 0.00 2.74
180 181 7.815840 TTCTGGATTTGAACTCATTTGTGTA 57.184 32.000 0.00 0.00 0.00 2.90
181 182 6.713762 TTCTGGATTTGAACTCATTTGTGT 57.286 33.333 0.00 0.00 0.00 3.72
182 183 9.695526 TTATTTCTGGATTTGAACTCATTTGTG 57.304 29.630 0.00 0.00 0.00 3.33
185 186 9.374838 GCATTATTTCTGGATTTGAACTCATTT 57.625 29.630 0.00 0.00 0.00 2.32
186 187 7.703621 CGCATTATTTCTGGATTTGAACTCATT 59.296 33.333 0.00 0.00 0.00 2.57
187 188 7.067372 TCGCATTATTTCTGGATTTGAACTCAT 59.933 33.333 0.00 0.00 0.00 2.90
188 189 6.374053 TCGCATTATTTCTGGATTTGAACTCA 59.626 34.615 0.00 0.00 0.00 3.41
189 190 6.785191 TCGCATTATTTCTGGATTTGAACTC 58.215 36.000 0.00 0.00 0.00 3.01
190 191 6.678900 GCTCGCATTATTTCTGGATTTGAACT 60.679 38.462 0.00 0.00 0.00 3.01
191 192 5.456822 GCTCGCATTATTTCTGGATTTGAAC 59.543 40.000 0.00 0.00 0.00 3.18
192 193 5.125257 TGCTCGCATTATTTCTGGATTTGAA 59.875 36.000 0.00 0.00 0.00 2.69
193 194 4.639755 TGCTCGCATTATTTCTGGATTTGA 59.360 37.500 0.00 0.00 0.00 2.69
194 195 4.736793 GTGCTCGCATTATTTCTGGATTTG 59.263 41.667 0.00 0.00 0.00 2.32
195 196 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
196 197 3.316308 GGTGCTCGCATTATTTCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
197 198 2.880890 GGTGCTCGCATTATTTCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
198 199 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
199 200 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
200 201 3.374988 TCTTGGTGCTCGCATTATTTCTG 59.625 43.478 0.00 0.00 0.00 3.02
201 202 3.375299 GTCTTGGTGCTCGCATTATTTCT 59.625 43.478 0.00 0.00 0.00 2.52
202 203 3.375299 AGTCTTGGTGCTCGCATTATTTC 59.625 43.478 0.00 0.00 0.00 2.17
203 204 3.347216 AGTCTTGGTGCTCGCATTATTT 58.653 40.909 0.00 0.00 0.00 1.40
204 205 2.991250 AGTCTTGGTGCTCGCATTATT 58.009 42.857 0.00 0.00 0.00 1.40
205 206 2.698855 AGTCTTGGTGCTCGCATTAT 57.301 45.000 0.00 0.00 0.00 1.28
206 207 2.472695 AAGTCTTGGTGCTCGCATTA 57.527 45.000 0.00 0.00 0.00 1.90
207 208 2.472695 TAAGTCTTGGTGCTCGCATT 57.527 45.000 0.00 0.00 0.00 3.56
208 209 2.472695 TTAAGTCTTGGTGCTCGCAT 57.527 45.000 0.00 0.00 0.00 4.73
209 210 1.871039 GTTTAAGTCTTGGTGCTCGCA 59.129 47.619 0.00 0.00 0.00 5.10
210 211 1.197036 GGTTTAAGTCTTGGTGCTCGC 59.803 52.381 0.00 0.00 0.00 5.03
211 212 2.767505 AGGTTTAAGTCTTGGTGCTCG 58.232 47.619 0.00 0.00 0.00 5.03
212 213 4.023963 GTCAAGGTTTAAGTCTTGGTGCTC 60.024 45.833 15.33 0.00 40.35 4.26
213 214 3.883489 GTCAAGGTTTAAGTCTTGGTGCT 59.117 43.478 15.33 0.00 40.35 4.40
214 215 3.303791 CGTCAAGGTTTAAGTCTTGGTGC 60.304 47.826 15.33 8.60 40.35 5.01
215 216 4.124238 TCGTCAAGGTTTAAGTCTTGGTG 58.876 43.478 15.33 10.47 40.35 4.17
216 217 4.141779 ACTCGTCAAGGTTTAAGTCTTGGT 60.142 41.667 15.33 6.77 40.35 3.67
217 218 4.377897 ACTCGTCAAGGTTTAAGTCTTGG 58.622 43.478 15.33 6.33 40.35 3.61
218 219 5.986004 AACTCGTCAAGGTTTAAGTCTTG 57.014 39.130 11.40 11.40 41.06 3.02
219 220 7.495055 TCTAAACTCGTCAAGGTTTAAGTCTT 58.505 34.615 0.00 0.00 36.03 3.01
220 221 7.047460 TCTAAACTCGTCAAGGTTTAAGTCT 57.953 36.000 0.00 0.00 36.03 3.24
221 222 7.886405 ATCTAAACTCGTCAAGGTTTAAGTC 57.114 36.000 0.00 0.00 36.03 3.01
222 223 7.816513 GGTATCTAAACTCGTCAAGGTTTAAGT 59.183 37.037 0.00 0.00 36.03 2.24
223 224 7.816031 TGGTATCTAAACTCGTCAAGGTTTAAG 59.184 37.037 0.00 0.00 36.03 1.85
224 225 7.669427 TGGTATCTAAACTCGTCAAGGTTTAA 58.331 34.615 0.00 0.00 36.03 1.52
225 226 7.039504 ACTGGTATCTAAACTCGTCAAGGTTTA 60.040 37.037 0.00 0.00 36.03 2.01
226 227 6.105397 TGGTATCTAAACTCGTCAAGGTTT 57.895 37.500 0.00 0.00 36.03 3.27
227 228 5.245526 ACTGGTATCTAAACTCGTCAAGGTT 59.754 40.000 0.00 0.00 38.80 3.50
228 229 4.771054 ACTGGTATCTAAACTCGTCAAGGT 59.229 41.667 0.00 0.00 0.00 3.50
229 230 5.103000 CACTGGTATCTAAACTCGTCAAGG 58.897 45.833 0.00 0.00 0.00 3.61
230 231 5.710984 ACACTGGTATCTAAACTCGTCAAG 58.289 41.667 0.00 0.00 0.00 3.02
231 232 5.336213 GGACACTGGTATCTAAACTCGTCAA 60.336 44.000 0.00 0.00 0.00 3.18
232 233 4.157289 GGACACTGGTATCTAAACTCGTCA 59.843 45.833 0.00 0.00 0.00 4.35
233 234 4.398673 AGGACACTGGTATCTAAACTCGTC 59.601 45.833 0.00 0.00 0.00 4.20
234 235 4.342359 AGGACACTGGTATCTAAACTCGT 58.658 43.478 0.00 0.00 0.00 4.18
235 236 4.202030 GGAGGACACTGGTATCTAAACTCG 60.202 50.000 0.00 0.00 0.00 4.18
236 237 4.957327 AGGAGGACACTGGTATCTAAACTC 59.043 45.833 0.00 0.00 0.00 3.01
237 238 4.949121 AGGAGGACACTGGTATCTAAACT 58.051 43.478 0.00 0.00 0.00 2.66
238 239 6.406737 GGTTAGGAGGACACTGGTATCTAAAC 60.407 46.154 0.00 0.00 0.00 2.01
239 240 5.659971 GGTTAGGAGGACACTGGTATCTAAA 59.340 44.000 0.00 0.00 0.00 1.85
240 241 5.206587 GGTTAGGAGGACACTGGTATCTAA 58.793 45.833 0.00 0.00 0.00 2.10
241 242 4.231195 TGGTTAGGAGGACACTGGTATCTA 59.769 45.833 0.00 0.00 0.00 1.98
242 243 3.012502 TGGTTAGGAGGACACTGGTATCT 59.987 47.826 0.00 0.00 0.00 1.98
243 244 3.371965 TGGTTAGGAGGACACTGGTATC 58.628 50.000 0.00 0.00 0.00 2.24
244 245 3.484953 TGGTTAGGAGGACACTGGTAT 57.515 47.619 0.00 0.00 0.00 2.73
245 246 3.371965 GATGGTTAGGAGGACACTGGTA 58.628 50.000 0.00 0.00 0.00 3.25
246 247 2.188817 GATGGTTAGGAGGACACTGGT 58.811 52.381 0.00 0.00 0.00 4.00
247 248 1.486726 GGATGGTTAGGAGGACACTGG 59.513 57.143 0.00 0.00 0.00 4.00
248 249 2.187958 TGGATGGTTAGGAGGACACTG 58.812 52.381 0.00 0.00 0.00 3.66
249 250 2.572104 GTTGGATGGTTAGGAGGACACT 59.428 50.000 0.00 0.00 0.00 3.55
250 251 2.355818 GGTTGGATGGTTAGGAGGACAC 60.356 54.545 0.00 0.00 0.00 3.67
251 252 1.913419 GGTTGGATGGTTAGGAGGACA 59.087 52.381 0.00 0.00 0.00 4.02
252 253 1.913419 TGGTTGGATGGTTAGGAGGAC 59.087 52.381 0.00 0.00 0.00 3.85
253 254 1.913419 GTGGTTGGATGGTTAGGAGGA 59.087 52.381 0.00 0.00 0.00 3.71
254 255 1.633432 TGTGGTTGGATGGTTAGGAGG 59.367 52.381 0.00 0.00 0.00 4.30
255 256 3.652057 ATGTGGTTGGATGGTTAGGAG 57.348 47.619 0.00 0.00 0.00 3.69
256 257 5.725551 AATATGTGGTTGGATGGTTAGGA 57.274 39.130 0.00 0.00 0.00 2.94
257 258 6.790232 AAAATATGTGGTTGGATGGTTAGG 57.210 37.500 0.00 0.00 0.00 2.69
279 280 4.400884 AGATGCGTATTACCATGCCAAAAA 59.599 37.500 0.00 0.00 0.00 1.94
280 281 3.951037 AGATGCGTATTACCATGCCAAAA 59.049 39.130 0.00 0.00 0.00 2.44
281 282 3.550820 AGATGCGTATTACCATGCCAAA 58.449 40.909 0.00 0.00 0.00 3.28
284 285 2.766313 TGAGATGCGTATTACCATGCC 58.234 47.619 0.00 0.00 0.00 4.40
296 297 9.538508 TCCTTATGATATAAATGATGAGATGCG 57.461 33.333 0.00 0.00 0.00 4.73
314 315 7.284716 ACGTGACTTGTACTATGATCCTTATGA 59.715 37.037 0.00 0.00 0.00 2.15
316 317 7.584122 ACGTGACTTGTACTATGATCCTTAT 57.416 36.000 0.00 0.00 0.00 1.73
322 323 7.854422 CGTTATGTACGTGACTTGTACTATGAT 59.146 37.037 8.22 0.00 45.14 2.45
341 342 4.619973 TCAGTTTTACCACGTCGTTATGT 58.380 39.130 0.00 0.00 0.00 2.29
344 345 5.809562 TCTTTTCAGTTTTACCACGTCGTTA 59.190 36.000 0.00 0.00 0.00 3.18
351 352 5.243426 TGCTGTCTTTTCAGTTTTACCAC 57.757 39.130 0.00 0.00 37.70 4.16
355 356 5.287513 GCGTTTTGCTGTCTTTTCAGTTTTA 59.712 36.000 0.00 0.00 41.73 1.52
420 421 6.801718 TGGAGGATTCTTCGGTCTTATTTA 57.198 37.500 0.00 0.00 0.00 1.40
424 425 3.118738 GCTTGGAGGATTCTTCGGTCTTA 60.119 47.826 0.00 0.00 0.00 2.10
429 430 2.284190 GAAGCTTGGAGGATTCTTCGG 58.716 52.381 2.10 0.00 0.00 4.30
434 435 5.295540 GTCTGTATTGAAGCTTGGAGGATTC 59.704 44.000 2.10 0.00 32.92 2.52
442 443 7.928167 TCCATATGTAGTCTGTATTGAAGCTTG 59.072 37.037 2.10 0.00 0.00 4.01
443 444 8.023021 TCCATATGTAGTCTGTATTGAAGCTT 57.977 34.615 0.00 0.00 0.00 3.74
455 456 9.015367 GCGTCCATATATATCCATATGTAGTCT 57.985 37.037 1.24 0.00 37.23 3.24
467 468 8.191446 ACACTCTAACATGCGTCCATATATATC 58.809 37.037 0.00 0.00 0.00 1.63
476 477 3.777465 TCTACACTCTAACATGCGTCC 57.223 47.619 0.00 0.00 0.00 4.79
484 485 9.974750 GCAAAATTAGTGAATCTACACTCTAAC 57.025 33.333 4.63 0.00 46.36 2.34
488 489 7.900352 CGAAGCAAAATTAGTGAATCTACACTC 59.100 37.037 4.63 0.00 46.36 3.51
503 504 9.178427 GATATAGACTACGTACGAAGCAAAATT 57.822 33.333 24.41 0.00 0.00 1.82
504 505 8.347771 TGATATAGACTACGTACGAAGCAAAAT 58.652 33.333 24.41 9.22 0.00 1.82
509 510 6.702972 TCTGATATAGACTACGTACGAAGC 57.297 41.667 24.41 8.10 0.00 3.86
517 518 9.544314 CTTTTACGGATTCTGATATAGACTACG 57.456 37.037 0.00 0.00 45.18 3.51
519 520 9.584008 ACCTTTTACGGATTCTGATATAGACTA 57.416 33.333 0.00 0.00 34.43 2.59
523 524 8.888579 AACACCTTTTACGGATTCTGATATAG 57.111 34.615 0.00 0.00 0.00 1.31
529 530 7.318141 TCTACTAACACCTTTTACGGATTCTG 58.682 38.462 0.00 0.00 0.00 3.02
531 532 7.224167 CCATCTACTAACACCTTTTACGGATTC 59.776 40.741 0.00 0.00 0.00 2.52
536 537 5.416947 AGCCATCTACTAACACCTTTTACG 58.583 41.667 0.00 0.00 0.00 3.18
545 546 6.852420 AACAAGTCTAGCCATCTACTAACA 57.148 37.500 0.00 0.00 0.00 2.41
546 547 6.036191 GCAAACAAGTCTAGCCATCTACTAAC 59.964 42.308 0.00 0.00 0.00 2.34
581 600 5.175859 GGAAACGTCCAATCAGATAGTCAA 58.824 41.667 0.00 0.00 44.26 3.18
582 601 4.755411 GGAAACGTCCAATCAGATAGTCA 58.245 43.478 0.00 0.00 44.26 3.41
605 624 1.678101 GAATCTGCAAATCTTCGGGGG 59.322 52.381 0.00 0.00 0.00 5.40
608 627 2.223433 GCTGGAATCTGCAAATCTTCGG 60.223 50.000 0.00 0.00 37.71 4.30
766 788 3.932710 ACATAGCACTAACATGGAACGTG 59.067 43.478 0.00 0.01 0.00 4.49
767 789 4.181578 GACATAGCACTAACATGGAACGT 58.818 43.478 0.00 0.00 0.00 3.99
768 790 3.242944 CGACATAGCACTAACATGGAACG 59.757 47.826 0.00 0.00 0.00 3.95
769 791 3.555956 CCGACATAGCACTAACATGGAAC 59.444 47.826 0.00 0.00 0.00 3.62
770 792 3.449377 TCCGACATAGCACTAACATGGAA 59.551 43.478 0.00 0.00 0.00 3.53
771 793 3.028130 TCCGACATAGCACTAACATGGA 58.972 45.455 0.00 0.00 0.00 3.41
772 794 3.068165 TCTCCGACATAGCACTAACATGG 59.932 47.826 0.00 0.00 0.00 3.66
773 795 4.045104 GTCTCCGACATAGCACTAACATG 58.955 47.826 0.00 0.00 32.09 3.21
774 796 3.954904 AGTCTCCGACATAGCACTAACAT 59.045 43.478 0.00 0.00 34.60 2.71
775 797 3.353557 AGTCTCCGACATAGCACTAACA 58.646 45.455 0.00 0.00 34.60 2.41
776 798 4.373348 AAGTCTCCGACATAGCACTAAC 57.627 45.455 0.00 0.00 34.60 2.34
777 799 4.945543 TGTAAGTCTCCGACATAGCACTAA 59.054 41.667 0.00 0.00 34.60 2.24
778 800 4.520179 TGTAAGTCTCCGACATAGCACTA 58.480 43.478 0.00 0.00 34.60 2.74
779 801 3.353557 TGTAAGTCTCCGACATAGCACT 58.646 45.455 0.00 0.00 34.60 4.40
780 802 3.777465 TGTAAGTCTCCGACATAGCAC 57.223 47.619 0.00 0.00 34.60 4.40
781 803 3.490933 GCATGTAAGTCTCCGACATAGCA 60.491 47.826 0.00 0.00 34.60 3.49
782 804 3.053455 GCATGTAAGTCTCCGACATAGC 58.947 50.000 0.00 0.00 34.60 2.97
783 805 4.576216 AGCATGTAAGTCTCCGACATAG 57.424 45.455 0.00 0.00 34.60 2.23
903 4177 1.979308 GGCCCTAAATAGGACTCCTCC 59.021 57.143 8.09 0.00 46.63 4.30
1155 4429 0.959372 ACGAGTTGGAGGACGACGAT 60.959 55.000 0.00 0.00 38.59 3.73
1161 4435 2.935481 ACGAATACGAGTTGGAGGAC 57.065 50.000 0.00 0.00 42.66 3.85
1240 4514 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1241 4515 2.870341 TTGTCGTCGTCGTCGTCGT 61.870 57.895 18.44 0.00 45.27 4.34
1242 4516 2.128017 TTGTCGTCGTCGTCGTCG 60.128 61.111 14.18 14.18 46.06 5.12
1282 4559 1.189446 CAAAACGAGACCGACGAACAG 59.811 52.381 0.00 0.00 39.50 3.16
1305 4582 1.878522 GTACCAGACGGCAGCGATG 60.879 63.158 0.00 0.00 34.57 3.84
1317 4594 4.027295 CGTTCGTACTCGTAGTAGTACCAG 60.027 50.000 8.22 1.61 46.00 4.00
1395 4672 2.176792 GGTAAACTGCTGCGCTGC 59.823 61.111 29.76 29.76 0.00 5.25
1396 4673 0.671781 AGAGGTAAACTGCTGCGCTG 60.672 55.000 9.73 10.04 0.00 5.18
1397 4674 0.390472 GAGAGGTAAACTGCTGCGCT 60.390 55.000 9.73 0.00 0.00 5.92
1398 4675 0.390472 AGAGAGGTAAACTGCTGCGC 60.390 55.000 0.00 0.00 0.00 6.09
1399 4676 1.728971 CAAGAGAGGTAAACTGCTGCG 59.271 52.381 0.00 0.00 0.00 5.18
1419 4696 8.345565 CACTAGTGCCCAGTGATAAATTAAATC 58.654 37.037 10.54 0.00 45.10 2.17
1430 4711 1.203137 ACTACCACTAGTGCCCAGTGA 60.203 52.381 17.86 0.00 45.10 3.41
1466 4751 3.208747 ACCTGAAATTGTCACGACCTT 57.791 42.857 0.00 0.00 31.13 3.50
1500 4785 1.007387 GCAAGGCAACCTGAAACCG 60.007 57.895 0.00 0.00 32.13 4.44
1502 4787 0.040067 CGAGCAAGGCAACCTGAAAC 60.040 55.000 0.00 0.00 32.13 2.78
1657 4942 4.943705 GGAAGTCAATGCTTAGGAATCACA 59.056 41.667 0.00 0.00 0.00 3.58
1950 5240 3.668447 CAACATATGGCCTAGCTTCGAT 58.332 45.455 3.32 0.00 0.00 3.59
2005 5298 5.242171 TCTTGTCTTGAACACCACTCGTATA 59.758 40.000 0.00 0.00 37.70 1.47
2006 5299 4.038763 TCTTGTCTTGAACACCACTCGTAT 59.961 41.667 0.00 0.00 37.70 3.06
2007 5300 3.382227 TCTTGTCTTGAACACCACTCGTA 59.618 43.478 0.00 0.00 37.70 3.43
2054 5352 4.814224 ATAAGATGGGCAGTTTGGGTAT 57.186 40.909 0.00 0.00 0.00 2.73
2059 5357 2.423185 TGCGAATAAGATGGGCAGTTTG 59.577 45.455 0.00 0.00 0.00 2.93
2066 5364 3.732212 TCAGTCATGCGAATAAGATGGG 58.268 45.455 0.00 0.00 0.00 4.00
2116 5414 5.123227 GCAAGGTTGTATATCCTTAGTGCA 58.877 41.667 1.86 0.00 41.44 4.57
2123 5421 5.894298 TCTGATGCAAGGTTGTATATCCT 57.106 39.130 0.00 0.00 33.56 3.24
2307 5617 5.122554 CCCGTAGATGAGCTATGTAGTACAG 59.877 48.000 9.25 0.00 34.83 2.74
2644 5974 4.792704 GCGTCAAAAAGGAAGCATTGAAGA 60.793 41.667 4.83 0.00 41.15 2.87
2976 6315 1.667236 TGACATGGATAGCTTTGGCG 58.333 50.000 0.00 0.00 44.37 5.69
3030 6369 3.893326 AGAAAGCAAGCACAAAAAGGT 57.107 38.095 0.00 0.00 0.00 3.50
3049 6388 4.638421 TCCATAAAACATGAACGCCCTAAG 59.362 41.667 0.00 0.00 0.00 2.18
3162 6501 2.286365 TCCAAGAACGCCAAAAGGAT 57.714 45.000 0.00 0.00 0.00 3.24
3172 6511 5.523552 TGTTGTATCATAGCATCCAAGAACG 59.476 40.000 0.00 0.00 0.00 3.95
3339 6678 8.749026 ATTGAAGAGTTCATCTATTGCTTCAT 57.251 30.769 0.00 0.00 39.66 2.57
3522 6892 1.273759 ACTCTCTCCTGCATGCTTCA 58.726 50.000 20.33 0.00 0.00 3.02
3526 6896 2.275318 GTTGTACTCTCTCCTGCATGC 58.725 52.381 11.82 11.82 0.00 4.06
3547 6917 1.652563 GGTTTGTGCCGTCTTCCAC 59.347 57.895 0.00 0.00 0.00 4.02
3647 7017 3.810579 GGCTCTCACAGAGTCACAG 57.189 57.895 0.09 0.00 45.89 3.66
3651 7021 3.580731 GTGTTTAGGCTCTCACAGAGTC 58.419 50.000 0.00 0.00 46.94 3.36
3652 7022 2.029828 CGTGTTTAGGCTCTCACAGAGT 60.030 50.000 13.89 0.00 44.12 3.24
3653 7023 2.229062 TCGTGTTTAGGCTCTCACAGAG 59.771 50.000 13.89 0.00 45.04 3.35
3654 7024 2.229062 CTCGTGTTTAGGCTCTCACAGA 59.771 50.000 13.89 11.19 0.00 3.41
3682 7052 2.941453 TCGTCTCTAGGTCATGTTGC 57.059 50.000 0.00 0.00 0.00 4.17
3691 7061 3.308053 TCGTCGTGTTAATCGTCTCTAGG 59.692 47.826 0.00 0.00 0.00 3.02
3692 7062 4.511457 TCGTCGTGTTAATCGTCTCTAG 57.489 45.455 0.00 0.00 0.00 2.43
3693 7063 4.567959 TCATCGTCGTGTTAATCGTCTCTA 59.432 41.667 0.00 0.00 0.00 2.43
3694 7064 3.373130 TCATCGTCGTGTTAATCGTCTCT 59.627 43.478 0.00 0.00 0.00 3.10
3695 7065 3.477802 GTCATCGTCGTGTTAATCGTCTC 59.522 47.826 0.00 0.00 0.00 3.36
3696 7066 3.423571 GTCATCGTCGTGTTAATCGTCT 58.576 45.455 0.00 0.00 0.00 4.18
3697 7067 2.210485 CGTCATCGTCGTGTTAATCGTC 59.790 50.000 0.00 0.00 0.00 4.20
3698 7068 2.159667 TCGTCATCGTCGTGTTAATCGT 60.160 45.455 0.00 0.00 38.33 3.73
3699 7069 2.433808 TCGTCATCGTCGTGTTAATCG 58.566 47.619 0.00 0.00 38.33 3.34
3700 7070 3.237660 CACTCGTCATCGTCGTGTTAATC 59.762 47.826 0.00 0.00 36.10 1.75
3701 7071 3.120095 TCACTCGTCATCGTCGTGTTAAT 60.120 43.478 0.00 0.00 38.99 1.40
3702 7072 2.223845 TCACTCGTCATCGTCGTGTTAA 59.776 45.455 0.00 0.00 38.99 2.01
3703 7073 1.799994 TCACTCGTCATCGTCGTGTTA 59.200 47.619 0.00 0.00 38.99 2.41
3704 7074 0.589708 TCACTCGTCATCGTCGTGTT 59.410 50.000 0.00 0.00 38.99 3.32
3705 7075 0.110328 GTCACTCGTCATCGTCGTGT 60.110 55.000 0.00 0.00 38.99 4.49
3706 7076 0.110373 TGTCACTCGTCATCGTCGTG 60.110 55.000 0.00 0.00 39.13 4.35
3707 7077 0.803117 ATGTCACTCGTCATCGTCGT 59.197 50.000 0.00 0.00 38.33 4.34
3708 7078 1.202031 TGATGTCACTCGTCATCGTCG 60.202 52.381 0.00 0.00 42.05 5.12
3709 7079 2.177977 GTGATGTCACTCGTCATCGTC 58.822 52.381 5.91 0.00 42.94 4.20
3710 7080 1.539827 TGTGATGTCACTCGTCATCGT 59.460 47.619 13.71 0.00 46.55 3.73
3711 7081 2.159517 TCTGTGATGTCACTCGTCATCG 60.160 50.000 13.71 0.00 46.55 3.84
3712 7082 3.433709 CTCTGTGATGTCACTCGTCATC 58.566 50.000 13.71 0.00 46.55 2.92
3713 7083 2.416566 GCTCTGTGATGTCACTCGTCAT 60.417 50.000 13.71 0.00 46.55 3.06
3714 7084 1.068264 GCTCTGTGATGTCACTCGTCA 60.068 52.381 13.71 0.00 46.55 4.35
3715 7085 1.068264 TGCTCTGTGATGTCACTCGTC 60.068 52.381 13.71 2.91 46.55 4.20
3716 7086 0.961753 TGCTCTGTGATGTCACTCGT 59.038 50.000 13.71 0.00 46.55 4.18
3717 7087 1.991264 CTTGCTCTGTGATGTCACTCG 59.009 52.381 13.71 5.87 46.55 4.18
3718 7088 3.252400 CTCTTGCTCTGTGATGTCACTC 58.748 50.000 13.71 2.62 46.55 3.51
3719 7089 2.028294 CCTCTTGCTCTGTGATGTCACT 60.028 50.000 13.71 0.00 46.55 3.41
3720 7090 2.344950 CCTCTTGCTCTGTGATGTCAC 58.655 52.381 6.21 6.21 46.59 3.67
3721 7091 1.338484 GCCTCTTGCTCTGTGATGTCA 60.338 52.381 0.00 0.00 36.87 3.58
3722 7092 1.367659 GCCTCTTGCTCTGTGATGTC 58.632 55.000 0.00 0.00 36.87 3.06
3723 7093 0.035630 GGCCTCTTGCTCTGTGATGT 60.036 55.000 0.00 0.00 40.92 3.06
3724 7094 0.035725 TGGCCTCTTGCTCTGTGATG 60.036 55.000 3.32 0.00 40.92 3.07
3725 7095 0.035630 GTGGCCTCTTGCTCTGTGAT 60.036 55.000 3.32 0.00 40.92 3.06
3726 7096 1.372683 GTGGCCTCTTGCTCTGTGA 59.627 57.895 3.32 0.00 40.92 3.58
3727 7097 1.673665 GGTGGCCTCTTGCTCTGTG 60.674 63.158 3.32 0.00 40.92 3.66
3728 7098 2.121992 CTGGTGGCCTCTTGCTCTGT 62.122 60.000 3.32 0.00 40.92 3.41
3729 7099 1.376942 CTGGTGGCCTCTTGCTCTG 60.377 63.158 3.32 0.00 40.92 3.35
3730 7100 3.076092 CTGGTGGCCTCTTGCTCT 58.924 61.111 3.32 0.00 40.92 4.09
3731 7101 2.749441 GCTGGTGGCCTCTTGCTC 60.749 66.667 3.32 0.00 40.92 4.26
3761 7131 4.208632 CCTCAATGGCGACTGGTC 57.791 61.111 0.00 0.00 0.00 4.02
3794 7164 1.906824 GGTCTCCGTCACCTCCACA 60.907 63.158 0.00 0.00 0.00 4.17
3847 7217 3.699413 TGGTCATTTGGCTTCATCATCA 58.301 40.909 0.00 0.00 0.00 3.07
3868 7238 3.149196 AGTGCTCATTGGTCGTTTCATT 58.851 40.909 0.00 0.00 0.00 2.57
3897 7267 2.635443 GCATGGGTGGGTTTGGTCG 61.635 63.158 0.00 0.00 0.00 4.79
3931 8223 0.579156 GATTTGGAGCATCGTCTCGC 59.421 55.000 0.00 0.00 34.37 5.03
3951 8243 0.321671 ATCTGGGTGTGGTTCTGTCG 59.678 55.000 0.00 0.00 0.00 4.35
3952 8244 3.535561 CATATCTGGGTGTGGTTCTGTC 58.464 50.000 0.00 0.00 0.00 3.51
3957 8249 0.258774 GGCCATATCTGGGTGTGGTT 59.741 55.000 0.00 0.00 43.36 3.67
4021 8313 1.437986 CGTCGAGGGTCCTTCATCC 59.562 63.158 1.42 0.00 0.00 3.51
4026 8318 4.070552 GCAGCGTCGAGGGTCCTT 62.071 66.667 6.88 0.00 0.00 3.36
4101 8393 2.271173 CCGGTTTGGTAGCCCCTC 59.729 66.667 0.00 0.00 0.00 4.30
4112 8404 4.736896 GCTCCTCGTCGCCGGTTT 62.737 66.667 1.90 0.00 33.95 3.27
4120 8412 1.735376 TAATGCCGGAGCTCCTCGTC 61.735 60.000 29.73 15.69 40.80 4.20
4132 8424 1.066752 TCGGTCCGATGTAATGCCG 59.933 57.895 10.71 0.00 40.43 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.