Multiple sequence alignment - TraesCS7D01G312500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G312500 chr7D 100.000 4566 0 0 1 4566 396131287 396135852 0.000000e+00 8432
1 TraesCS7D01G312500 chr7D 92.617 149 9 1 1 147 126465359 126465211 3.580000e-51 213
2 TraesCS7D01G312500 chr7A 94.172 2608 74 30 660 3226 449734292 449736862 0.000000e+00 3903
3 TraesCS7D01G312500 chr7A 91.700 747 31 9 3342 4064 449736864 449737603 0.000000e+00 1007
4 TraesCS7D01G312500 chr7A 88.506 174 18 2 4136 4307 449737702 449737875 4.630000e-50 209
5 TraesCS7D01G312500 chr7B 92.181 1701 67 25 784 2437 399336551 399338232 0.000000e+00 2344
6 TraesCS7D01G312500 chr7B 95.423 1136 38 7 3340 4467 399339115 399340244 0.000000e+00 1797
7 TraesCS7D01G312500 chr7B 97.234 470 10 2 2761 3227 399338647 399339116 0.000000e+00 793
8 TraesCS7D01G312500 chr7B 98.333 300 5 0 2436 2735 399338353 399338652 1.130000e-145 527
9 TraesCS7D01G312500 chr7B 88.660 194 20 2 294 486 399336266 399336458 7.640000e-58 235
10 TraesCS7D01G312500 chr7B 93.548 124 7 1 3223 3345 125639498 125639621 2.810000e-42 183
11 TraesCS7D01G312500 chr7B 97.753 89 2 0 660 748 399336459 399336547 2.200000e-33 154
12 TraesCS7D01G312500 chr3D 94.000 150 7 1 1 148 424698068 424698217 4.600000e-55 226
13 TraesCS7D01G312500 chr5B 93.919 148 6 2 1 145 318169088 318169235 2.140000e-53 220
14 TraesCS7D01G312500 chr5B 95.833 120 5 0 3225 3344 227837315 227837196 1.300000e-45 195
15 TraesCS7D01G312500 chr5B 93.750 128 6 2 3226 3351 595288700 595288573 1.680000e-44 191
16 TraesCS7D01G312500 chr5B 91.667 132 7 3 3221 3352 291790879 291790752 3.630000e-41 180
17 TraesCS7D01G312500 chr2B 93.878 147 7 1 1 145 397168192 397168046 2.140000e-53 220
18 TraesCS7D01G312500 chr1D 92.208 154 9 2 1 151 336628311 336628464 9.950000e-52 215
19 TraesCS7D01G312500 chr1D 96.552 116 4 0 3226 3341 150938129 150938014 4.660000e-45 193
20 TraesCS7D01G312500 chr6D 91.667 156 8 3 1 151 75643935 75643780 1.290000e-50 211
21 TraesCS7D01G312500 chr4D 92.000 150 10 1 1 148 20769335 20769186 4.630000e-50 209
22 TraesCS7D01G312500 chr2D 91.558 154 10 2 1 151 627064667 627064514 4.630000e-50 209
23 TraesCS7D01G312500 chr2A 92.517 147 9 1 1 145 51389285 51389431 4.630000e-50 209
24 TraesCS7D01G312500 chr2A 94.958 119 6 0 3226 3344 609453939 609453821 2.170000e-43 187
25 TraesCS7D01G312500 chr6B 95.161 124 6 0 3221 3344 228695271 228695148 3.600000e-46 196
26 TraesCS7D01G312500 chr4B 94.262 122 7 0 3221 3342 34580157 34580036 2.170000e-43 187
27 TraesCS7D01G312500 chr4A 94.958 119 6 0 3223 3341 514351660 514351542 2.170000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G312500 chr7D 396131287 396135852 4565 False 8432.000000 8432 100.000000 1 4566 1 chr7D.!!$F1 4565
1 TraesCS7D01G312500 chr7A 449734292 449737875 3583 False 1706.333333 3903 91.459333 660 4307 3 chr7A.!!$F1 3647
2 TraesCS7D01G312500 chr7B 399336266 399340244 3978 False 975.000000 2344 94.930667 294 4467 6 chr7B.!!$F2 4173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.036010 AAATGTGGAGAGAGGTGCGG 60.036 55.000 0.00 0.00 0.0 5.69 F
1554 1578 0.392998 ATCGGCGCCAGAAATTCTGT 60.393 50.000 28.98 4.93 42.8 3.41 F
2331 2382 0.034059 CCTATCATGGACACGGGAGC 59.966 60.000 0.00 0.00 0.0 4.70 F
2940 3134 1.336240 GCATTTTGGTGTCAGCAGTCC 60.336 52.381 4.68 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2011 1.134367 CAGGACGCGGAGAAAGACATA 59.866 52.381 12.47 0.00 0.00 2.29 R
3225 3423 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
3228 3426 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4496 4786 0.107459 GAGGTGTGAAGGCCCTCATC 60.107 60.000 7.46 4.28 43.51 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.775911 TCTGCAAATGTGGAGAGAGG 57.224 50.000 2.39 0.00 46.25 3.69
21 22 1.980765 TCTGCAAATGTGGAGAGAGGT 59.019 47.619 2.39 0.00 46.25 3.85
22 23 2.082231 CTGCAAATGTGGAGAGAGGTG 58.918 52.381 0.00 0.00 45.65 4.00
23 24 0.807496 GCAAATGTGGAGAGAGGTGC 59.193 55.000 0.00 0.00 0.00 5.01
24 25 1.081892 CAAATGTGGAGAGAGGTGCG 58.918 55.000 0.00 0.00 0.00 5.34
25 26 0.036010 AAATGTGGAGAGAGGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
26 27 1.903877 AATGTGGAGAGAGGTGCGGG 61.904 60.000 0.00 0.00 0.00 6.13
27 28 2.997897 GTGGAGAGAGGTGCGGGT 60.998 66.667 0.00 0.00 0.00 5.28
28 29 1.681327 GTGGAGAGAGGTGCGGGTA 60.681 63.158 0.00 0.00 0.00 3.69
29 30 1.043673 GTGGAGAGAGGTGCGGGTAT 61.044 60.000 0.00 0.00 0.00 2.73
30 31 0.755698 TGGAGAGAGGTGCGGGTATC 60.756 60.000 0.00 0.00 0.00 2.24
31 32 0.468400 GGAGAGAGGTGCGGGTATCT 60.468 60.000 0.00 0.00 0.00 1.98
32 33 1.404843 GAGAGAGGTGCGGGTATCTT 58.595 55.000 0.00 0.00 0.00 2.40
33 34 1.757699 GAGAGAGGTGCGGGTATCTTT 59.242 52.381 0.00 0.00 0.00 2.52
34 35 2.168728 GAGAGAGGTGCGGGTATCTTTT 59.831 50.000 0.00 0.00 0.00 2.27
35 36 2.572104 AGAGAGGTGCGGGTATCTTTTT 59.428 45.455 0.00 0.00 0.00 1.94
36 37 3.773119 AGAGAGGTGCGGGTATCTTTTTA 59.227 43.478 0.00 0.00 0.00 1.52
37 38 3.869832 GAGAGGTGCGGGTATCTTTTTAC 59.130 47.826 0.00 0.00 0.00 2.01
38 39 3.262405 AGAGGTGCGGGTATCTTTTTACA 59.738 43.478 0.00 0.00 0.00 2.41
39 40 4.004982 GAGGTGCGGGTATCTTTTTACAA 58.995 43.478 0.00 0.00 0.00 2.41
40 41 4.400120 AGGTGCGGGTATCTTTTTACAAA 58.600 39.130 0.00 0.00 0.00 2.83
41 42 4.828387 AGGTGCGGGTATCTTTTTACAAAA 59.172 37.500 0.00 0.00 0.00 2.44
42 43 5.479027 AGGTGCGGGTATCTTTTTACAAAAT 59.521 36.000 0.00 0.00 0.00 1.82
43 44 6.014925 AGGTGCGGGTATCTTTTTACAAAATT 60.015 34.615 0.00 0.00 0.00 1.82
44 45 7.177041 AGGTGCGGGTATCTTTTTACAAAATTA 59.823 33.333 0.00 0.00 0.00 1.40
45 46 7.274033 GGTGCGGGTATCTTTTTACAAAATTAC 59.726 37.037 0.00 0.00 0.00 1.89
46 47 7.274033 GTGCGGGTATCTTTTTACAAAATTACC 59.726 37.037 10.21 10.21 32.83 2.85
47 48 7.039923 TGCGGGTATCTTTTTACAAAATTACCA 60.040 33.333 15.89 2.50 33.95 3.25
48 49 7.977293 GCGGGTATCTTTTTACAAAATTACCAT 59.023 33.333 15.89 0.51 33.95 3.55
65 66 9.474313 AAATTACCATAGTTTGCTTTCTATCCA 57.526 29.630 0.00 0.00 0.00 3.41
66 67 9.646522 AATTACCATAGTTTGCTTTCTATCCAT 57.353 29.630 0.00 0.00 0.00 3.41
67 68 8.677148 TTACCATAGTTTGCTTTCTATCCATC 57.323 34.615 0.00 0.00 0.00 3.51
68 69 6.662755 ACCATAGTTTGCTTTCTATCCATCA 58.337 36.000 0.00 0.00 0.00 3.07
69 70 6.769822 ACCATAGTTTGCTTTCTATCCATCAG 59.230 38.462 0.00 0.00 0.00 2.90
70 71 6.994496 CCATAGTTTGCTTTCTATCCATCAGA 59.006 38.462 0.00 0.00 0.00 3.27
71 72 7.664731 CCATAGTTTGCTTTCTATCCATCAGAT 59.335 37.037 0.00 0.00 39.15 2.90
72 73 9.716531 CATAGTTTGCTTTCTATCCATCAGATA 57.283 33.333 0.00 0.00 36.33 1.98
75 76 9.941325 AGTTTGCTTTCTATCCATCAGATATAG 57.059 33.333 0.00 0.00 36.84 1.31
76 77 9.935241 GTTTGCTTTCTATCCATCAGATATAGA 57.065 33.333 0.31 0.31 36.84 1.98
84 85 8.907885 TCTATCCATCAGATATAGATTGAACGG 58.092 37.037 0.31 0.00 36.84 4.44
85 86 6.918067 TCCATCAGATATAGATTGAACGGT 57.082 37.500 0.00 0.00 0.00 4.83
86 87 6.925211 TCCATCAGATATAGATTGAACGGTC 58.075 40.000 0.00 0.00 0.00 4.79
87 88 6.721668 TCCATCAGATATAGATTGAACGGTCT 59.278 38.462 0.33 0.00 0.00 3.85
88 89 7.888546 TCCATCAGATATAGATTGAACGGTCTA 59.111 37.037 0.33 0.00 0.00 2.59
89 90 8.690884 CCATCAGATATAGATTGAACGGTCTAT 58.309 37.037 0.33 0.00 40.02 1.98
95 96 9.803315 GATATAGATTGAACGGTCTATATTGCA 57.197 33.333 0.33 0.00 44.58 4.08
97 98 6.851222 AGATTGAACGGTCTATATTGCAAG 57.149 37.500 4.94 0.00 0.00 4.01
98 99 6.582636 AGATTGAACGGTCTATATTGCAAGA 58.417 36.000 4.94 0.00 0.00 3.02
99 100 7.220030 AGATTGAACGGTCTATATTGCAAGAT 58.780 34.615 11.88 11.88 0.00 2.40
100 101 6.603237 TTGAACGGTCTATATTGCAAGATG 57.397 37.500 16.68 6.94 0.00 2.90
101 102 5.056480 TGAACGGTCTATATTGCAAGATGG 58.944 41.667 16.68 13.71 0.00 3.51
102 103 3.403038 ACGGTCTATATTGCAAGATGGC 58.597 45.455 16.68 9.50 0.00 4.40
103 104 3.181455 ACGGTCTATATTGCAAGATGGCA 60.181 43.478 16.68 1.69 43.19 4.92
104 105 3.434641 CGGTCTATATTGCAAGATGGCAG 59.565 47.826 16.68 6.42 45.88 4.85
105 106 4.645535 GGTCTATATTGCAAGATGGCAGA 58.354 43.478 16.68 8.69 45.88 4.26
106 107 4.453819 GGTCTATATTGCAAGATGGCAGAC 59.546 45.833 20.05 20.05 45.88 3.51
107 108 5.059161 GTCTATATTGCAAGATGGCAGACA 58.941 41.667 21.99 2.22 45.88 3.41
108 109 5.049818 GTCTATATTGCAAGATGGCAGACAC 60.050 44.000 21.99 9.45 45.88 3.67
109 110 1.913778 ATTGCAAGATGGCAGACACA 58.086 45.000 4.94 0.00 45.88 3.72
110 111 0.953727 TTGCAAGATGGCAGACACAC 59.046 50.000 0.00 0.00 45.88 3.82
111 112 0.890542 TGCAAGATGGCAGACACACC 60.891 55.000 0.00 0.00 39.25 4.16
112 113 0.890542 GCAAGATGGCAGACACACCA 60.891 55.000 0.00 0.00 41.06 4.17
114 115 1.471287 CAAGATGGCAGACACACCATG 59.529 52.381 0.00 0.00 46.72 3.66
115 116 0.986527 AGATGGCAGACACACCATGA 59.013 50.000 0.00 0.00 46.72 3.07
116 117 1.352017 AGATGGCAGACACACCATGAA 59.648 47.619 0.00 0.00 46.72 2.57
117 118 1.470098 GATGGCAGACACACCATGAAC 59.530 52.381 0.00 0.00 46.72 3.18
118 119 0.537143 TGGCAGACACACCATGAACC 60.537 55.000 0.00 0.00 0.00 3.62
119 120 0.537143 GGCAGACACACCATGAACCA 60.537 55.000 0.00 0.00 0.00 3.67
120 121 1.317613 GCAGACACACCATGAACCAA 58.682 50.000 0.00 0.00 0.00 3.67
121 122 1.001378 GCAGACACACCATGAACCAAC 60.001 52.381 0.00 0.00 0.00 3.77
122 123 2.575532 CAGACACACCATGAACCAACT 58.424 47.619 0.00 0.00 0.00 3.16
123 124 2.549754 CAGACACACCATGAACCAACTC 59.450 50.000 0.00 0.00 0.00 3.01
124 125 2.172505 AGACACACCATGAACCAACTCA 59.827 45.455 0.00 0.00 0.00 3.41
125 126 2.549754 GACACACCATGAACCAACTCAG 59.450 50.000 0.00 0.00 0.00 3.35
126 127 2.092429 ACACACCATGAACCAACTCAGT 60.092 45.455 0.00 0.00 0.00 3.41
127 128 2.951642 CACACCATGAACCAACTCAGTT 59.048 45.455 0.00 0.00 0.00 3.16
128 129 3.381272 CACACCATGAACCAACTCAGTTT 59.619 43.478 0.00 0.00 0.00 2.66
129 130 4.023291 ACACCATGAACCAACTCAGTTTT 58.977 39.130 0.00 0.00 0.00 2.43
130 131 4.466015 ACACCATGAACCAACTCAGTTTTT 59.534 37.500 0.00 0.00 0.00 1.94
186 187 5.975693 CCAGGTTGGCTAAATTTTCTACA 57.024 39.130 0.00 0.00 0.00 2.74
187 188 6.530019 CCAGGTTGGCTAAATTTTCTACAT 57.470 37.500 0.00 0.00 0.00 2.29
188 189 6.332630 CCAGGTTGGCTAAATTTTCTACATG 58.667 40.000 0.00 0.00 0.00 3.21
189 190 5.807011 CAGGTTGGCTAAATTTTCTACATGC 59.193 40.000 0.00 0.00 0.00 4.06
190 191 5.480073 AGGTTGGCTAAATTTTCTACATGCA 59.520 36.000 0.00 0.00 0.00 3.96
191 192 5.807011 GGTTGGCTAAATTTTCTACATGCAG 59.193 40.000 0.00 0.00 0.00 4.41
192 193 6.389906 GTTGGCTAAATTTTCTACATGCAGT 58.610 36.000 0.00 0.00 0.00 4.40
193 194 7.362574 GGTTGGCTAAATTTTCTACATGCAGTA 60.363 37.037 0.00 0.00 0.00 2.74
205 206 6.580963 CTACATGCAGTAGCTAGTTTGAAG 57.419 41.667 0.00 0.00 43.40 3.02
206 207 5.152623 ACATGCAGTAGCTAGTTTGAAGA 57.847 39.130 0.00 0.00 42.74 2.87
207 208 5.174395 ACATGCAGTAGCTAGTTTGAAGAG 58.826 41.667 0.00 0.00 42.74 2.85
208 209 4.193826 TGCAGTAGCTAGTTTGAAGAGG 57.806 45.455 0.00 0.00 42.74 3.69
209 210 2.933260 GCAGTAGCTAGTTTGAAGAGGC 59.067 50.000 0.00 0.00 37.91 4.70
210 211 3.617531 GCAGTAGCTAGTTTGAAGAGGCA 60.618 47.826 0.00 0.00 37.91 4.75
211 212 4.764172 CAGTAGCTAGTTTGAAGAGGCAT 58.236 43.478 0.00 0.00 0.00 4.40
212 213 4.808364 CAGTAGCTAGTTTGAAGAGGCATC 59.192 45.833 0.00 0.00 0.00 3.91
213 214 3.988976 AGCTAGTTTGAAGAGGCATCA 57.011 42.857 0.00 0.00 0.00 3.07
214 215 4.292186 AGCTAGTTTGAAGAGGCATCAA 57.708 40.909 0.00 0.00 35.11 2.57
215 216 4.006319 AGCTAGTTTGAAGAGGCATCAAC 58.994 43.478 0.00 0.00 36.57 3.18
216 217 3.181516 GCTAGTTTGAAGAGGCATCAACG 60.182 47.826 0.00 0.00 36.57 4.10
217 218 3.126001 AGTTTGAAGAGGCATCAACGA 57.874 42.857 0.00 0.00 36.57 3.85
218 219 3.070018 AGTTTGAAGAGGCATCAACGAG 58.930 45.455 0.00 0.00 36.57 4.18
219 220 1.442769 TTGAAGAGGCATCAACGAGC 58.557 50.000 0.00 0.00 32.10 5.03
224 225 3.195698 GGCATCAACGAGCCGACC 61.196 66.667 1.50 0.00 41.70 4.79
225 226 2.434185 GCATCAACGAGCCGACCA 60.434 61.111 1.50 0.00 0.00 4.02
226 227 1.815421 GCATCAACGAGCCGACCAT 60.815 57.895 1.50 0.00 0.00 3.55
227 228 1.766143 GCATCAACGAGCCGACCATC 61.766 60.000 1.50 0.00 0.00 3.51
228 229 1.226974 ATCAACGAGCCGACCATCG 60.227 57.895 1.50 0.00 44.36 3.84
232 233 3.081133 CGAGCCGACCATCGTTTG 58.919 61.111 0.00 0.00 38.40 2.93
233 234 1.445410 CGAGCCGACCATCGTTTGA 60.445 57.895 0.00 0.00 38.40 2.69
234 235 1.683790 CGAGCCGACCATCGTTTGAC 61.684 60.000 0.00 0.00 38.40 3.18
235 236 1.359459 GAGCCGACCATCGTTTGACC 61.359 60.000 0.00 0.00 38.40 4.02
236 237 1.669760 GCCGACCATCGTTTGACCA 60.670 57.895 0.00 0.00 38.40 4.02
237 238 1.024579 GCCGACCATCGTTTGACCAT 61.025 55.000 0.00 0.00 38.40 3.55
238 239 1.448985 CCGACCATCGTTTGACCATT 58.551 50.000 0.00 0.00 38.40 3.16
239 240 1.810151 CCGACCATCGTTTGACCATTT 59.190 47.619 0.00 0.00 38.40 2.32
240 241 2.227865 CCGACCATCGTTTGACCATTTT 59.772 45.455 0.00 0.00 38.40 1.82
241 242 3.305064 CCGACCATCGTTTGACCATTTTT 60.305 43.478 0.00 0.00 38.40 1.94
242 243 4.083217 CCGACCATCGTTTGACCATTTTTA 60.083 41.667 0.00 0.00 38.40 1.52
243 244 5.392595 CCGACCATCGTTTGACCATTTTTAT 60.393 40.000 0.00 0.00 38.40 1.40
244 245 5.511377 CGACCATCGTTTGACCATTTTTATG 59.489 40.000 0.00 0.00 34.72 1.90
245 246 6.339587 ACCATCGTTTGACCATTTTTATGT 57.660 33.333 0.00 0.00 0.00 2.29
246 247 7.455641 ACCATCGTTTGACCATTTTTATGTA 57.544 32.000 0.00 0.00 0.00 2.29
247 248 7.887381 ACCATCGTTTGACCATTTTTATGTAA 58.113 30.769 0.00 0.00 0.00 2.41
248 249 7.810759 ACCATCGTTTGACCATTTTTATGTAAC 59.189 33.333 0.00 0.00 0.00 2.50
249 250 7.810282 CCATCGTTTGACCATTTTTATGTAACA 59.190 33.333 0.00 0.00 0.00 2.41
250 251 9.186323 CATCGTTTGACCATTTTTATGTAACAA 57.814 29.630 0.00 0.00 0.00 2.83
251 252 9.921637 ATCGTTTGACCATTTTTATGTAACAAT 57.078 25.926 0.00 0.00 0.00 2.71
252 253 9.751542 TCGTTTGACCATTTTTATGTAACAATT 57.248 25.926 0.00 0.00 0.00 2.32
260 261 9.919348 CCATTTTTATGTAACAATTAGCATTGC 57.081 29.630 0.00 0.00 43.39 3.56
299 300 9.944376 AACAACTATCACAAGCTAATAAAGAGA 57.056 29.630 0.00 0.00 0.00 3.10
300 301 9.593134 ACAACTATCACAAGCTAATAAAGAGAG 57.407 33.333 0.00 0.00 0.00 3.20
301 302 9.039870 CAACTATCACAAGCTAATAAAGAGAGG 57.960 37.037 0.00 0.00 0.00 3.69
369 370 6.339587 TGACCAACTAAATTTTCATGTCCC 57.660 37.500 0.00 0.00 0.00 4.46
375 376 3.967332 AAATTTTCATGTCCCAGGCTG 57.033 42.857 7.75 7.75 0.00 4.85
382 383 1.942657 CATGTCCCAGGCTGTATTTCG 59.057 52.381 14.43 0.00 0.00 3.46
384 385 0.539986 GTCCCAGGCTGTATTTCGGA 59.460 55.000 14.43 8.77 0.00 4.55
385 386 1.065709 GTCCCAGGCTGTATTTCGGAA 60.066 52.381 14.43 0.00 0.00 4.30
388 389 3.456644 TCCCAGGCTGTATTTCGGAATTA 59.543 43.478 14.43 0.00 0.00 1.40
389 390 3.815401 CCCAGGCTGTATTTCGGAATTAG 59.185 47.826 14.43 0.00 0.00 1.73
407 408 9.148104 CGGAATTAGTTTTAGCTTACTGTAGTT 57.852 33.333 0.00 0.00 0.00 2.24
417 418 9.798994 TTTAGCTTACTGTAGTTCTATTACTGC 57.201 33.333 0.00 0.00 0.00 4.40
418 419 7.406031 AGCTTACTGTAGTTCTATTACTGCA 57.594 36.000 0.00 0.00 38.23 4.41
443 444 8.707839 CAAATAAGTTCTCAACTCTCAGTTCTC 58.292 37.037 0.00 0.00 41.91 2.87
503 505 2.386661 AACTGTCTTGCTATGTCCCG 57.613 50.000 0.00 0.00 0.00 5.14
504 506 0.537188 ACTGTCTTGCTATGTCCCGG 59.463 55.000 0.00 0.00 0.00 5.73
505 507 0.537188 CTGTCTTGCTATGTCCCGGT 59.463 55.000 0.00 0.00 0.00 5.28
506 508 1.754803 CTGTCTTGCTATGTCCCGGTA 59.245 52.381 0.00 0.00 0.00 4.02
507 509 1.754803 TGTCTTGCTATGTCCCGGTAG 59.245 52.381 0.00 0.00 0.00 3.18
508 510 2.029623 GTCTTGCTATGTCCCGGTAGA 58.970 52.381 0.00 0.00 0.00 2.59
509 511 2.628657 GTCTTGCTATGTCCCGGTAGAT 59.371 50.000 0.00 0.00 0.00 1.98
510 512 3.825014 GTCTTGCTATGTCCCGGTAGATA 59.175 47.826 0.00 0.00 0.00 1.98
511 513 3.825014 TCTTGCTATGTCCCGGTAGATAC 59.175 47.826 0.00 0.00 0.00 2.24
512 514 3.520691 TGCTATGTCCCGGTAGATACT 57.479 47.619 0.00 0.00 0.00 2.12
513 515 4.645863 TGCTATGTCCCGGTAGATACTA 57.354 45.455 0.00 0.00 0.00 1.82
514 516 5.188988 TGCTATGTCCCGGTAGATACTAT 57.811 43.478 0.00 0.00 0.00 2.12
515 517 6.317663 TGCTATGTCCCGGTAGATACTATA 57.682 41.667 0.00 0.00 0.00 1.31
516 518 6.907961 TGCTATGTCCCGGTAGATACTATAT 58.092 40.000 0.00 0.00 0.00 0.86
517 519 6.996879 TGCTATGTCCCGGTAGATACTATATC 59.003 42.308 0.00 0.00 0.00 1.63
518 520 6.147492 GCTATGTCCCGGTAGATACTATATCG 59.853 46.154 0.00 0.00 0.00 2.92
519 521 4.774124 TGTCCCGGTAGATACTATATCGG 58.226 47.826 0.00 0.00 44.78 4.18
520 522 4.225942 TGTCCCGGTAGATACTATATCGGT 59.774 45.833 0.00 0.00 43.89 4.69
521 523 5.189180 GTCCCGGTAGATACTATATCGGTT 58.811 45.833 0.00 0.00 43.89 4.44
522 524 6.070251 TGTCCCGGTAGATACTATATCGGTTA 60.070 42.308 0.00 0.00 43.89 2.85
523 525 6.481644 GTCCCGGTAGATACTATATCGGTTAG 59.518 46.154 0.00 0.00 43.89 2.34
524 526 6.384015 TCCCGGTAGATACTATATCGGTTAGA 59.616 42.308 0.00 0.00 43.89 2.10
525 527 7.071698 TCCCGGTAGATACTATATCGGTTAGAT 59.928 40.741 0.00 0.00 43.89 1.98
526 528 7.718753 CCCGGTAGATACTATATCGGTTAGATT 59.281 40.741 0.00 0.00 43.89 2.40
527 529 9.118300 CCGGTAGATACTATATCGGTTAGATTT 57.882 37.037 0.00 0.00 41.13 2.17
592 594 7.792374 TTTCTCTCTTGCATATTATGTCACC 57.208 36.000 5.60 0.00 0.00 4.02
593 595 6.737720 TCTCTCTTGCATATTATGTCACCT 57.262 37.500 5.60 0.00 0.00 4.00
594 596 6.519382 TCTCTCTTGCATATTATGTCACCTG 58.481 40.000 5.60 0.00 0.00 4.00
595 597 6.324770 TCTCTCTTGCATATTATGTCACCTGA 59.675 38.462 5.60 3.13 0.00 3.86
596 598 6.283694 TCTCTTGCATATTATGTCACCTGAC 58.716 40.000 5.60 0.00 44.97 3.51
597 599 6.098838 TCTCTTGCATATTATGTCACCTGACT 59.901 38.462 6.97 0.00 44.99 3.41
598 600 6.051074 TCTTGCATATTATGTCACCTGACTG 58.949 40.000 6.97 0.00 44.99 3.51
599 601 5.612725 TGCATATTATGTCACCTGACTGA 57.387 39.130 6.97 0.00 44.99 3.41
600 602 5.604565 TGCATATTATGTCACCTGACTGAG 58.395 41.667 6.97 0.00 44.99 3.35
601 603 5.363580 TGCATATTATGTCACCTGACTGAGA 59.636 40.000 6.97 0.00 44.99 3.27
602 604 6.042437 TGCATATTATGTCACCTGACTGAGAT 59.958 38.462 6.97 0.00 44.99 2.75
603 605 6.933521 GCATATTATGTCACCTGACTGAGATT 59.066 38.462 6.97 0.00 44.99 2.40
604 606 7.443575 GCATATTATGTCACCTGACTGAGATTT 59.556 37.037 6.97 0.00 44.99 2.17
605 607 8.986847 CATATTATGTCACCTGACTGAGATTTC 58.013 37.037 6.97 0.00 44.99 2.17
606 608 4.897509 ATGTCACCTGACTGAGATTTCA 57.102 40.909 6.97 0.00 44.99 2.69
619 621 5.312120 TGAGATTTCAGTCGACTAAGACC 57.688 43.478 19.57 7.96 41.83 3.85
620 622 5.010933 TGAGATTTCAGTCGACTAAGACCT 58.989 41.667 19.57 12.68 41.83 3.85
621 623 6.178324 TGAGATTTCAGTCGACTAAGACCTA 58.822 40.000 19.57 1.32 41.83 3.08
622 624 6.316640 TGAGATTTCAGTCGACTAAGACCTAG 59.683 42.308 19.57 3.12 41.83 3.02
623 625 4.698583 TTTCAGTCGACTAAGACCTAGC 57.301 45.455 19.57 0.00 41.83 3.42
624 626 3.630892 TCAGTCGACTAAGACCTAGCT 57.369 47.619 19.57 0.00 41.83 3.32
625 627 4.750021 TCAGTCGACTAAGACCTAGCTA 57.250 45.455 19.57 0.00 41.83 3.32
626 628 4.440880 TCAGTCGACTAAGACCTAGCTAC 58.559 47.826 19.57 0.00 41.83 3.58
627 629 4.081254 TCAGTCGACTAAGACCTAGCTACA 60.081 45.833 19.57 0.00 41.83 2.74
628 630 4.034279 CAGTCGACTAAGACCTAGCTACAC 59.966 50.000 19.57 0.00 41.83 2.90
629 631 3.312146 GTCGACTAAGACCTAGCTACACC 59.688 52.174 8.70 0.00 35.22 4.16
630 632 2.617774 CGACTAAGACCTAGCTACACCC 59.382 54.545 0.00 0.00 0.00 4.61
631 633 3.629087 GACTAAGACCTAGCTACACCCA 58.371 50.000 0.00 0.00 0.00 4.51
632 634 4.216708 GACTAAGACCTAGCTACACCCAT 58.783 47.826 0.00 0.00 0.00 4.00
633 635 4.621769 ACTAAGACCTAGCTACACCCATT 58.378 43.478 0.00 0.00 0.00 3.16
634 636 5.774179 ACTAAGACCTAGCTACACCCATTA 58.226 41.667 0.00 0.00 0.00 1.90
635 637 6.200114 ACTAAGACCTAGCTACACCCATTAA 58.800 40.000 0.00 0.00 0.00 1.40
636 638 6.670902 ACTAAGACCTAGCTACACCCATTAAA 59.329 38.462 0.00 0.00 0.00 1.52
637 639 6.382919 AAGACCTAGCTACACCCATTAAAA 57.617 37.500 0.00 0.00 0.00 1.52
638 640 6.382919 AGACCTAGCTACACCCATTAAAAA 57.617 37.500 0.00 0.00 0.00 1.94
688 690 7.447374 ACTAAATTTTCATGGTTGATCGTCA 57.553 32.000 0.00 0.00 0.00 4.35
759 762 7.730364 ATTCCACATGATTATCGAAGTAACC 57.270 36.000 0.00 0.00 0.00 2.85
763 766 6.292168 CCACATGATTATCGAAGTAACCGTTC 60.292 42.308 0.00 0.00 0.00 3.95
821 825 0.878523 TGTGAGCGTTGTCCCTTTCG 60.879 55.000 0.00 0.00 0.00 3.46
840 844 1.147824 CAGCTCCATAGGCCACCAG 59.852 63.158 5.01 0.00 0.00 4.00
1391 1414 4.121669 GCCTCGTGCTCGCTCTGA 62.122 66.667 2.69 0.00 36.87 3.27
1392 1415 2.202544 CCTCGTGCTCGCTCTGAC 60.203 66.667 2.69 0.00 36.96 3.51
1393 1416 2.695759 CCTCGTGCTCGCTCTGACT 61.696 63.158 2.69 0.00 36.96 3.41
1394 1417 1.513800 CTCGTGCTCGCTCTGACTG 60.514 63.158 2.69 0.00 36.96 3.51
1404 1427 1.800655 CGCTCTGACTGAATTCTCCGG 60.801 57.143 7.05 0.00 0.00 5.14
1418 1442 1.745320 CTCCGGTTCTCATACGGGGG 61.745 65.000 0.00 0.00 44.28 5.40
1459 1483 5.252547 TGCATTTGGTTGTAATCTGAGCTA 58.747 37.500 0.00 0.00 0.00 3.32
1463 1487 4.901197 TGGTTGTAATCTGAGCTACCAA 57.099 40.909 9.24 0.00 35.70 3.67
1554 1578 0.392998 ATCGGCGCCAGAAATTCTGT 60.393 50.000 28.98 4.93 42.80 3.41
1565 1589 7.414098 GCGCCAGAAATTCTGTAGATTTTTCTA 60.414 37.037 20.18 0.00 42.80 2.10
1585 1609 9.965824 TTTTCTAGCTTTGACTAATTTTTGGAG 57.034 29.630 0.00 0.00 0.00 3.86
1599 1623 9.844257 CTAATTTTTGGAGAGATATCTCAAGGT 57.156 33.333 29.83 12.91 45.21 3.50
1654 1678 5.480642 TTTGCCTAATTGATGAAAAGCCA 57.519 34.783 0.00 0.00 0.00 4.75
1741 1765 1.531264 CGTGACTTATGGACGGACTCG 60.531 57.143 0.00 0.00 43.02 4.18
1763 1788 3.037549 TGTGATCTTTTGCCCCAAGTTT 58.962 40.909 0.00 0.00 0.00 2.66
1830 1856 2.092646 TCCCCATATTTCCCACGAGTTG 60.093 50.000 0.00 0.00 0.00 3.16
1985 2011 3.386237 GAGAGGAGTGTGGCGGCT 61.386 66.667 11.43 0.00 0.00 5.52
2009 2035 3.158537 TTTCTCCGCGTCCTGCACA 62.159 57.895 4.92 0.00 46.97 4.57
2010 2036 3.858868 TTCTCCGCGTCCTGCACAC 62.859 63.158 4.92 0.00 46.97 3.82
2011 2037 4.363990 CTCCGCGTCCTGCACACT 62.364 66.667 4.92 0.00 46.97 3.55
2068 2119 1.103398 GGAATTCCACATGCGAGGGG 61.103 60.000 20.04 0.00 35.64 4.79
2120 2171 3.011517 ATCTTGTGGAGGGCGGCT 61.012 61.111 9.56 0.00 0.00 5.52
2222 2273 4.259356 AGTTGGTAGGGTTTCTTAATCGC 58.741 43.478 0.00 0.00 0.00 4.58
2244 2295 4.221342 CACACAATGAGAACCATTTCACG 58.779 43.478 0.00 0.00 42.55 4.35
2301 2352 2.970639 CCGCTCTTCCTTCCACGA 59.029 61.111 0.00 0.00 0.00 4.35
2329 2380 0.762842 CCCCTATCATGGACACGGGA 60.763 60.000 0.00 0.00 33.46 5.14
2330 2381 0.681733 CCCTATCATGGACACGGGAG 59.318 60.000 0.00 0.00 33.46 4.30
2331 2382 0.034059 CCTATCATGGACACGGGAGC 59.966 60.000 0.00 0.00 0.00 4.70
2739 2918 7.700656 GCACTTACTGTTTTCATGTGTTTAACT 59.299 33.333 0.00 0.00 0.00 2.24
2753 2932 7.528996 TGTGTTTAACTAGTTAGCCTAGACA 57.471 36.000 14.73 12.77 45.21 3.41
2754 2933 7.954835 TGTGTTTAACTAGTTAGCCTAGACAA 58.045 34.615 14.73 2.27 45.21 3.18
2755 2934 8.591072 TGTGTTTAACTAGTTAGCCTAGACAAT 58.409 33.333 14.73 0.00 45.21 2.71
2940 3134 1.336240 GCATTTTGGTGTCAGCAGTCC 60.336 52.381 4.68 0.00 0.00 3.85
3080 3274 3.195396 GCAGGTATTTTCATCTTGGCCAA 59.805 43.478 19.25 19.25 0.00 4.52
3081 3275 4.322650 GCAGGTATTTTCATCTTGGCCAAA 60.323 41.667 20.91 11.07 0.00 3.28
3084 3281 6.880529 CAGGTATTTTCATCTTGGCCAAATTT 59.119 34.615 20.91 4.03 0.00 1.82
3219 3417 9.444600 GAAACACAAGAAACATATAGAGGGTTA 57.555 33.333 0.00 0.00 0.00 2.85
3225 3423 9.950496 CAAGAAACATATAGAGGGTTATATGCT 57.050 33.333 11.14 0.00 43.25 3.79
3230 3428 8.770010 ACATATAGAGGGTTATATGCTACTCC 57.230 38.462 11.14 0.00 43.25 3.85
3231 3429 7.785506 ACATATAGAGGGTTATATGCTACTCCC 59.214 40.741 11.14 0.00 43.25 4.30
3232 3430 4.768807 AGAGGGTTATATGCTACTCCCT 57.231 45.455 0.00 0.00 46.55 4.20
3234 3432 3.792515 AGGGTTATATGCTACTCCCTCC 58.207 50.000 0.00 0.00 40.96 4.30
3235 3433 2.496470 GGGTTATATGCTACTCCCTCCG 59.504 54.545 0.00 0.00 32.89 4.63
3236 3434 3.163467 GGTTATATGCTACTCCCTCCGT 58.837 50.000 0.00 0.00 0.00 4.69
3237 3435 3.193056 GGTTATATGCTACTCCCTCCGTC 59.807 52.174 0.00 0.00 0.00 4.79
3238 3436 1.926108 ATATGCTACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
3239 3437 0.536687 TATGCTACTCCCTCCGTCCG 60.537 60.000 0.00 0.00 0.00 4.79
3240 3438 3.217743 GCTACTCCCTCCGTCCGG 61.218 72.222 0.00 0.00 0.00 5.14
3241 3439 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
3242 3440 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3243 3441 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3244 3442 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3245 3443 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3246 3444 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3247 3445 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3248 3446 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3249 3447 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3250 3448 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3251 3449 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3252 3450 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
3253 3451 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
3254 3452 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
3255 3453 3.119029 CCGTCCGGAAATACTTGTCCTAA 60.119 47.826 5.23 0.00 37.50 2.69
3256 3454 4.497300 CGTCCGGAAATACTTGTCCTAAA 58.503 43.478 5.23 0.00 0.00 1.85
3257 3455 4.931002 CGTCCGGAAATACTTGTCCTAAAA 59.069 41.667 5.23 0.00 0.00 1.52
3258 3456 5.409214 CGTCCGGAAATACTTGTCCTAAAAA 59.591 40.000 5.23 0.00 0.00 1.94
3259 3457 6.093082 CGTCCGGAAATACTTGTCCTAAAAAT 59.907 38.462 5.23 0.00 0.00 1.82
3260 3458 7.248437 GTCCGGAAATACTTGTCCTAAAAATG 58.752 38.462 5.23 0.00 0.00 2.32
3261 3459 6.376018 TCCGGAAATACTTGTCCTAAAAATGG 59.624 38.462 0.00 0.00 0.00 3.16
3262 3460 6.152154 CCGGAAATACTTGTCCTAAAAATGGT 59.848 38.462 0.00 0.00 0.00 3.55
3263 3461 7.309560 CCGGAAATACTTGTCCTAAAAATGGTT 60.310 37.037 0.00 0.00 0.00 3.67
3264 3462 7.540745 CGGAAATACTTGTCCTAAAAATGGTTG 59.459 37.037 0.00 0.00 0.00 3.77
3265 3463 8.581578 GGAAATACTTGTCCTAAAAATGGTTGA 58.418 33.333 0.00 0.00 0.00 3.18
3266 3464 9.974980 GAAATACTTGTCCTAAAAATGGTTGAA 57.025 29.630 0.00 0.00 0.00 2.69
3269 3467 7.839680 ACTTGTCCTAAAAATGGTTGAATCT 57.160 32.000 0.00 0.00 0.00 2.40
3270 3468 8.934023 ACTTGTCCTAAAAATGGTTGAATCTA 57.066 30.769 0.00 0.00 0.00 1.98
3271 3469 9.014297 ACTTGTCCTAAAAATGGTTGAATCTAG 57.986 33.333 0.00 0.00 0.00 2.43
3272 3470 9.231297 CTTGTCCTAAAAATGGTTGAATCTAGA 57.769 33.333 0.00 0.00 0.00 2.43
3273 3471 8.561738 TGTCCTAAAAATGGTTGAATCTAGAC 57.438 34.615 0.00 0.00 0.00 2.59
3274 3472 8.383175 TGTCCTAAAAATGGTTGAATCTAGACT 58.617 33.333 0.00 0.00 0.00 3.24
3275 3473 9.232473 GTCCTAAAAATGGTTGAATCTAGACTT 57.768 33.333 0.00 0.00 0.00 3.01
3316 3514 8.293699 ACATCCATTTTATCCAGTTTTAGGAC 57.706 34.615 0.00 0.00 38.13 3.85
3317 3515 7.893302 ACATCCATTTTATCCAGTTTTAGGACA 59.107 33.333 0.00 0.00 38.13 4.02
3318 3516 8.748412 CATCCATTTTATCCAGTTTTAGGACAA 58.252 33.333 0.00 0.00 38.13 3.18
3319 3517 8.348285 TCCATTTTATCCAGTTTTAGGACAAG 57.652 34.615 0.00 0.00 38.13 3.16
3320 3518 7.947890 TCCATTTTATCCAGTTTTAGGACAAGT 59.052 33.333 0.00 0.00 38.13 3.16
3321 3519 9.238368 CCATTTTATCCAGTTTTAGGACAAGTA 57.762 33.333 0.00 0.00 38.13 2.24
3327 3525 7.429636 TCCAGTTTTAGGACAAGTATTTTCG 57.570 36.000 0.00 0.00 0.00 3.46
3328 3526 6.428771 TCCAGTTTTAGGACAAGTATTTTCGG 59.571 38.462 0.00 0.00 0.00 4.30
3329 3527 6.428771 CCAGTTTTAGGACAAGTATTTTCGGA 59.571 38.462 0.00 0.00 0.00 4.55
3330 3528 7.295930 CAGTTTTAGGACAAGTATTTTCGGAC 58.704 38.462 0.00 0.00 0.00 4.79
3331 3529 6.146673 AGTTTTAGGACAAGTATTTTCGGACG 59.853 38.462 0.00 0.00 0.00 4.79
3332 3530 2.968675 AGGACAAGTATTTTCGGACGG 58.031 47.619 0.00 0.00 0.00 4.79
3333 3531 2.564062 AGGACAAGTATTTTCGGACGGA 59.436 45.455 0.00 0.00 0.00 4.69
3334 3532 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
3335 3533 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3336 3534 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3337 3535 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3338 3536 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3455 3655 5.925509 ACTACAAGAAGCACAGGAAACTTA 58.074 37.500 0.00 0.00 40.21 2.24
3615 3815 1.517257 GTGATCCTCACCTGCGACG 60.517 63.158 0.00 0.00 41.37 5.12
3687 3887 3.005791 GCTGTGGTGCTTTGGTCTTTATT 59.994 43.478 0.00 0.00 0.00 1.40
3765 3965 1.519408 TTTGTAGACCCGCTTGCTTC 58.481 50.000 0.00 0.00 0.00 3.86
3819 4019 2.439338 AAGTGTGCGGTGTGCCAA 60.439 55.556 0.00 0.00 45.60 4.52
3891 4093 1.333308 CCGTGAATGTTGTGCAACTGA 59.667 47.619 14.97 0.00 41.67 3.41
3911 4113 1.419387 ACATCTCCTGCTATGGGCTTC 59.581 52.381 0.00 0.00 42.39 3.86
4024 4246 1.140312 TCCATAGCCCCATGTCCTTC 58.860 55.000 0.00 0.00 0.00 3.46
4084 4307 6.216662 TCCTGGGTCAATTCCTTGTTTATAGA 59.783 38.462 0.00 0.00 33.87 1.98
4086 4309 7.229506 CCTGGGTCAATTCCTTGTTTATAGATC 59.770 40.741 0.00 0.00 33.87 2.75
4144 4430 5.452216 CGTGTGGGCCTAGTTGTACATATTA 60.452 44.000 4.53 0.00 0.00 0.98
4327 4616 9.802039 ACTGAAGTACATTTAAAAATAGGGTCA 57.198 29.630 0.00 0.00 0.00 4.02
4356 4645 8.970691 ATCATAAAAATTATTCATACGCAGGC 57.029 30.769 0.00 0.00 0.00 4.85
4452 4742 2.362077 GCACTGATGTGGAAACAAAGGT 59.638 45.455 0.00 0.00 46.06 3.50
4467 4757 3.326588 ACAAAGGTGAGGTGTGCACTATA 59.673 43.478 19.41 0.00 36.53 1.31
4468 4758 4.019321 ACAAAGGTGAGGTGTGCACTATAT 60.019 41.667 19.41 0.94 36.53 0.86
4469 4759 4.408182 AAGGTGAGGTGTGCACTATATC 57.592 45.455 19.41 11.14 36.53 1.63
4470 4760 3.647636 AGGTGAGGTGTGCACTATATCT 58.352 45.455 19.41 2.81 36.53 1.98
4471 4761 3.639094 AGGTGAGGTGTGCACTATATCTC 59.361 47.826 19.41 13.32 36.53 2.75
4472 4762 3.639094 GGTGAGGTGTGCACTATATCTCT 59.361 47.826 19.41 4.79 36.53 3.10
4473 4763 4.827835 GGTGAGGTGTGCACTATATCTCTA 59.172 45.833 19.41 1.78 36.53 2.43
4474 4764 5.478679 GGTGAGGTGTGCACTATATCTCTAT 59.521 44.000 19.41 0.00 36.53 1.98
4475 4765 6.015010 GGTGAGGTGTGCACTATATCTCTATT 60.015 42.308 19.41 0.00 36.53 1.73
4476 4766 6.865726 GTGAGGTGTGCACTATATCTCTATTG 59.134 42.308 19.41 0.00 33.57 1.90
4477 4767 6.551227 TGAGGTGTGCACTATATCTCTATTGT 59.449 38.462 19.41 0.00 0.00 2.71
4478 4768 7.724061 TGAGGTGTGCACTATATCTCTATTGTA 59.276 37.037 19.41 0.00 0.00 2.41
4479 4769 8.478775 AGGTGTGCACTATATCTCTATTGTAA 57.521 34.615 19.41 0.00 0.00 2.41
4480 4770 8.580720 AGGTGTGCACTATATCTCTATTGTAAG 58.419 37.037 19.41 0.00 0.00 2.34
4481 4771 8.577296 GGTGTGCACTATATCTCTATTGTAAGA 58.423 37.037 19.41 0.00 0.00 2.10
4482 4772 9.619316 GTGTGCACTATATCTCTATTGTAAGAG 57.381 37.037 19.41 0.00 43.72 2.85
4492 4782 7.648039 TCTCTATTGTAAGAGAAACTCCTCC 57.352 40.000 1.16 0.00 47.00 4.30
4493 4783 6.608002 TCTCTATTGTAAGAGAAACTCCTCCC 59.392 42.308 1.16 0.00 47.00 4.30
4494 4784 6.261435 TCTATTGTAAGAGAAACTCCTCCCA 58.739 40.000 0.00 0.00 33.76 4.37
4495 4785 5.843019 ATTGTAAGAGAAACTCCTCCCAA 57.157 39.130 0.00 0.00 33.76 4.12
4496 4786 4.891992 TGTAAGAGAAACTCCTCCCAAG 57.108 45.455 0.00 0.00 33.76 3.61
4497 4787 4.489737 TGTAAGAGAAACTCCTCCCAAGA 58.510 43.478 0.00 0.00 33.76 3.02
4498 4788 5.094387 TGTAAGAGAAACTCCTCCCAAGAT 58.906 41.667 0.00 0.00 33.76 2.40
4499 4789 4.566426 AAGAGAAACTCCTCCCAAGATG 57.434 45.455 0.00 0.00 33.76 2.90
4500 4790 3.796111 AGAGAAACTCCTCCCAAGATGA 58.204 45.455 0.00 0.00 33.76 2.92
4501 4791 3.774216 AGAGAAACTCCTCCCAAGATGAG 59.226 47.826 0.00 0.00 39.80 2.90
4505 4795 2.922234 CCTCCCAAGATGAGGGCC 59.078 66.667 0.00 0.00 46.36 5.80
4506 4796 1.695597 CCTCCCAAGATGAGGGCCT 60.696 63.158 5.25 5.25 46.36 5.19
4507 4797 1.284841 CCTCCCAAGATGAGGGCCTT 61.285 60.000 7.89 0.00 46.36 4.35
4508 4798 0.182299 CTCCCAAGATGAGGGCCTTC 59.818 60.000 7.89 8.18 46.36 3.46
4509 4799 0.549902 TCCCAAGATGAGGGCCTTCA 60.550 55.000 21.17 21.17 46.36 3.02
4510 4800 0.394899 CCCAAGATGAGGGCCTTCAC 60.395 60.000 21.34 13.82 39.96 3.18
4511 4801 0.329261 CCAAGATGAGGGCCTTCACA 59.671 55.000 21.34 0.47 0.00 3.58
4512 4802 1.457346 CAAGATGAGGGCCTTCACAC 58.543 55.000 21.34 16.67 0.00 3.82
4513 4803 0.329596 AAGATGAGGGCCTTCACACC 59.670 55.000 21.34 12.22 0.00 4.16
4514 4804 0.548682 AGATGAGGGCCTTCACACCT 60.549 55.000 21.34 14.30 37.31 4.00
4516 4806 2.671682 GAGGGCCTTCACACCTCC 59.328 66.667 7.89 0.00 43.93 4.30
4517 4807 2.936032 AGGGCCTTCACACCTCCC 60.936 66.667 0.00 0.00 37.24 4.30
4518 4808 4.410400 GGGCCTTCACACCTCCCG 62.410 72.222 0.84 0.00 0.00 5.14
4521 4811 4.760047 CCTTCACACCTCCCGCCG 62.760 72.222 0.00 0.00 0.00 6.46
4522 4812 4.760047 CTTCACACCTCCCGCCGG 62.760 72.222 0.00 0.00 0.00 6.13
4539 4829 3.555428 GCGCCGATCTGCCTTATC 58.445 61.111 0.00 0.00 0.00 1.75
4540 4830 1.005630 GCGCCGATCTGCCTTATCT 60.006 57.895 0.00 0.00 0.00 1.98
4541 4831 0.601311 GCGCCGATCTGCCTTATCTT 60.601 55.000 0.00 0.00 0.00 2.40
4542 4832 1.423395 CGCCGATCTGCCTTATCTTC 58.577 55.000 3.31 0.00 0.00 2.87
4543 4833 1.269778 CGCCGATCTGCCTTATCTTCA 60.270 52.381 3.31 0.00 0.00 3.02
4544 4834 2.803133 CGCCGATCTGCCTTATCTTCAA 60.803 50.000 3.31 0.00 0.00 2.69
4545 4835 3.406764 GCCGATCTGCCTTATCTTCAAT 58.593 45.455 0.00 0.00 0.00 2.57
4546 4836 3.188048 GCCGATCTGCCTTATCTTCAATG 59.812 47.826 0.00 0.00 0.00 2.82
4547 4837 3.750130 CCGATCTGCCTTATCTTCAATGG 59.250 47.826 0.00 0.00 0.00 3.16
4548 4838 3.188048 CGATCTGCCTTATCTTCAATGGC 59.812 47.826 0.00 0.00 43.49 4.40
4549 4839 2.936202 TCTGCCTTATCTTCAATGGCC 58.064 47.619 0.00 0.00 42.62 5.36
4550 4840 2.511218 TCTGCCTTATCTTCAATGGCCT 59.489 45.455 3.32 0.00 42.62 5.19
4551 4841 3.053395 TCTGCCTTATCTTCAATGGCCTT 60.053 43.478 3.32 0.00 42.62 4.35
4552 4842 4.165950 TCTGCCTTATCTTCAATGGCCTTA 59.834 41.667 3.32 0.00 42.62 2.69
4553 4843 4.464008 TGCCTTATCTTCAATGGCCTTAG 58.536 43.478 3.32 0.00 42.62 2.18
4554 4844 3.823304 GCCTTATCTTCAATGGCCTTAGG 59.177 47.826 3.32 0.00 37.81 2.69
4555 4845 4.401925 CCTTATCTTCAATGGCCTTAGGG 58.598 47.826 3.32 0.00 0.00 3.53
4565 4855 4.587056 CCTTAGGGCAATGGAGGC 57.413 61.111 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.980765 ACCTCTCTCCACATTTGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
2 3 2.082231 CACCTCTCTCCACATTTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
3 4 1.883638 GCACCTCTCTCCACATTTGCA 60.884 52.381 0.00 0.00 0.00 4.08
4 5 0.807496 GCACCTCTCTCCACATTTGC 59.193 55.000 0.00 0.00 0.00 3.68
5 6 1.081892 CGCACCTCTCTCCACATTTG 58.918 55.000 0.00 0.00 0.00 2.32
7 8 1.599047 CCGCACCTCTCTCCACATT 59.401 57.895 0.00 0.00 0.00 2.71
8 9 2.362369 CCCGCACCTCTCTCCACAT 61.362 63.158 0.00 0.00 0.00 3.21
9 10 2.435120 TACCCGCACCTCTCTCCACA 62.435 60.000 0.00 0.00 0.00 4.17
10 11 1.043673 ATACCCGCACCTCTCTCCAC 61.044 60.000 0.00 0.00 0.00 4.02
11 12 0.755698 GATACCCGCACCTCTCTCCA 60.756 60.000 0.00 0.00 0.00 3.86
12 13 0.468400 AGATACCCGCACCTCTCTCC 60.468 60.000 0.00 0.00 0.00 3.71
13 14 1.404843 AAGATACCCGCACCTCTCTC 58.595 55.000 0.00 0.00 0.00 3.20
14 15 1.867363 AAAGATACCCGCACCTCTCT 58.133 50.000 0.00 0.00 0.00 3.10
15 16 2.693267 AAAAGATACCCGCACCTCTC 57.307 50.000 0.00 0.00 0.00 3.20
16 17 3.262405 TGTAAAAAGATACCCGCACCTCT 59.738 43.478 0.00 0.00 0.00 3.69
17 18 3.602483 TGTAAAAAGATACCCGCACCTC 58.398 45.455 0.00 0.00 0.00 3.85
18 19 3.706600 TGTAAAAAGATACCCGCACCT 57.293 42.857 0.00 0.00 0.00 4.00
19 20 4.769859 TTTGTAAAAAGATACCCGCACC 57.230 40.909 0.00 0.00 0.00 5.01
20 21 7.274033 GGTAATTTTGTAAAAAGATACCCGCAC 59.726 37.037 13.85 0.00 33.82 5.34
21 22 7.039923 TGGTAATTTTGTAAAAAGATACCCGCA 60.040 33.333 18.22 6.38 36.21 5.69
22 23 7.314393 TGGTAATTTTGTAAAAAGATACCCGC 58.686 34.615 18.22 4.77 36.21 6.13
39 40 9.474313 TGGATAGAAAGCAAACTATGGTAATTT 57.526 29.630 0.00 0.00 39.29 1.82
40 41 9.646522 ATGGATAGAAAGCAAACTATGGTAATT 57.353 29.630 0.00 0.00 39.29 1.40
41 42 9.289782 GATGGATAGAAAGCAAACTATGGTAAT 57.710 33.333 0.00 0.00 39.29 1.89
42 43 8.271458 TGATGGATAGAAAGCAAACTATGGTAA 58.729 33.333 0.00 0.00 39.29 2.85
43 44 7.801104 TGATGGATAGAAAGCAAACTATGGTA 58.199 34.615 0.00 0.00 39.29 3.25
44 45 6.662755 TGATGGATAGAAAGCAAACTATGGT 58.337 36.000 0.00 0.00 42.88 3.55
45 46 6.994496 TCTGATGGATAGAAAGCAAACTATGG 59.006 38.462 0.00 0.00 30.74 2.74
46 47 8.618702 ATCTGATGGATAGAAAGCAAACTATG 57.381 34.615 0.00 0.00 32.04 2.23
49 50 9.941325 CTATATCTGATGGATAGAAAGCAAACT 57.059 33.333 0.00 0.00 39.89 2.66
50 51 9.935241 TCTATATCTGATGGATAGAAAGCAAAC 57.065 33.333 7.40 0.00 39.89 2.93
58 59 8.907885 CCGTTCAATCTATATCTGATGGATAGA 58.092 37.037 10.88 10.88 39.89 1.98
59 60 8.690884 ACCGTTCAATCTATATCTGATGGATAG 58.309 37.037 0.00 1.10 39.89 2.08
60 61 8.595362 ACCGTTCAATCTATATCTGATGGATA 57.405 34.615 0.00 0.00 40.69 2.59
61 62 7.398618 AGACCGTTCAATCTATATCTGATGGAT 59.601 37.037 0.00 0.00 38.38 3.41
62 63 6.721668 AGACCGTTCAATCTATATCTGATGGA 59.278 38.462 0.00 0.00 0.00 3.41
63 64 6.929625 AGACCGTTCAATCTATATCTGATGG 58.070 40.000 0.00 0.00 0.00 3.51
69 70 9.803315 TGCAATATAGACCGTTCAATCTATATC 57.197 33.333 12.07 4.58 44.71 1.63
71 72 9.639601 CTTGCAATATAGACCGTTCAATCTATA 57.360 33.333 0.00 4.02 42.05 1.31
72 73 8.367911 TCTTGCAATATAGACCGTTCAATCTAT 58.632 33.333 0.00 0.00 40.47 1.98
73 74 7.722363 TCTTGCAATATAGACCGTTCAATCTA 58.278 34.615 0.00 0.00 32.11 1.98
74 75 6.582636 TCTTGCAATATAGACCGTTCAATCT 58.417 36.000 0.00 0.00 0.00 2.40
75 76 6.844696 TCTTGCAATATAGACCGTTCAATC 57.155 37.500 0.00 0.00 0.00 2.67
76 77 6.205464 CCATCTTGCAATATAGACCGTTCAAT 59.795 38.462 0.00 0.00 0.00 2.57
77 78 5.527214 CCATCTTGCAATATAGACCGTTCAA 59.473 40.000 0.00 0.00 0.00 2.69
78 79 5.056480 CCATCTTGCAATATAGACCGTTCA 58.944 41.667 0.00 0.00 0.00 3.18
79 80 4.083802 GCCATCTTGCAATATAGACCGTTC 60.084 45.833 0.00 0.00 0.00 3.95
80 81 3.815401 GCCATCTTGCAATATAGACCGTT 59.185 43.478 0.00 0.00 0.00 4.44
81 82 3.181455 TGCCATCTTGCAATATAGACCGT 60.181 43.478 0.00 0.00 38.56 4.83
82 83 3.402110 TGCCATCTTGCAATATAGACCG 58.598 45.455 0.00 0.00 38.56 4.79
83 84 4.453819 GTCTGCCATCTTGCAATATAGACC 59.546 45.833 12.12 0.64 41.51 3.85
84 85 5.049818 GTGTCTGCCATCTTGCAATATAGAC 60.050 44.000 14.68 14.68 41.51 2.59
85 86 5.059161 GTGTCTGCCATCTTGCAATATAGA 58.941 41.667 0.00 0.00 41.51 1.98
86 87 4.818005 TGTGTCTGCCATCTTGCAATATAG 59.182 41.667 0.00 0.00 41.51 1.31
87 88 4.576053 GTGTGTCTGCCATCTTGCAATATA 59.424 41.667 0.00 0.00 41.51 0.86
88 89 3.379372 GTGTGTCTGCCATCTTGCAATAT 59.621 43.478 0.00 0.00 41.51 1.28
89 90 2.749076 GTGTGTCTGCCATCTTGCAATA 59.251 45.455 0.00 0.00 41.51 1.90
90 91 1.542915 GTGTGTCTGCCATCTTGCAAT 59.457 47.619 0.00 0.00 41.51 3.56
91 92 0.953727 GTGTGTCTGCCATCTTGCAA 59.046 50.000 0.00 0.00 41.51 4.08
92 93 0.890542 GGTGTGTCTGCCATCTTGCA 60.891 55.000 0.00 0.00 39.37 4.08
93 94 0.890542 TGGTGTGTCTGCCATCTTGC 60.891 55.000 0.00 0.00 0.00 4.01
94 95 1.471287 CATGGTGTGTCTGCCATCTTG 59.529 52.381 0.00 0.00 43.05 3.02
95 96 1.352017 TCATGGTGTGTCTGCCATCTT 59.648 47.619 0.00 0.00 43.05 2.40
96 97 0.986527 TCATGGTGTGTCTGCCATCT 59.013 50.000 0.00 0.00 43.05 2.90
97 98 1.470098 GTTCATGGTGTGTCTGCCATC 59.530 52.381 0.00 0.00 43.05 3.51
98 99 1.538047 GTTCATGGTGTGTCTGCCAT 58.462 50.000 0.00 0.00 45.55 4.40
99 100 0.537143 GGTTCATGGTGTGTCTGCCA 60.537 55.000 0.00 0.00 39.33 4.92
100 101 0.537143 TGGTTCATGGTGTGTCTGCC 60.537 55.000 0.00 0.00 0.00 4.85
101 102 1.001378 GTTGGTTCATGGTGTGTCTGC 60.001 52.381 0.00 0.00 0.00 4.26
102 103 2.549754 GAGTTGGTTCATGGTGTGTCTG 59.450 50.000 0.00 0.00 0.00 3.51
103 104 2.172505 TGAGTTGGTTCATGGTGTGTCT 59.827 45.455 0.00 0.00 0.00 3.41
104 105 2.549754 CTGAGTTGGTTCATGGTGTGTC 59.450 50.000 0.00 0.00 0.00 3.67
105 106 2.092429 ACTGAGTTGGTTCATGGTGTGT 60.092 45.455 0.00 0.00 0.00 3.72
106 107 2.575532 ACTGAGTTGGTTCATGGTGTG 58.424 47.619 0.00 0.00 0.00 3.82
107 108 3.297134 AACTGAGTTGGTTCATGGTGT 57.703 42.857 0.00 0.00 0.00 4.16
108 109 4.654091 AAAACTGAGTTGGTTCATGGTG 57.346 40.909 0.00 0.00 0.00 4.17
146 147 5.614308 ACCTGGCTAACTTACGTAGTTTTT 58.386 37.500 13.21 1.90 44.73 1.94
147 148 5.219343 ACCTGGCTAACTTACGTAGTTTT 57.781 39.130 13.21 3.95 44.73 2.43
148 149 4.879197 ACCTGGCTAACTTACGTAGTTT 57.121 40.909 13.21 6.02 44.73 2.66
151 152 3.518590 CCAACCTGGCTAACTTACGTAG 58.481 50.000 0.00 0.00 0.00 3.51
152 153 3.598019 CCAACCTGGCTAACTTACGTA 57.402 47.619 0.00 0.00 0.00 3.57
153 154 2.467566 CCAACCTGGCTAACTTACGT 57.532 50.000 0.00 0.00 0.00 3.57
164 165 5.975693 TGTAGAAAATTTAGCCAACCTGG 57.024 39.130 0.00 0.00 41.55 4.45
165 166 5.807011 GCATGTAGAAAATTTAGCCAACCTG 59.193 40.000 0.00 0.00 0.00 4.00
166 167 5.480073 TGCATGTAGAAAATTTAGCCAACCT 59.520 36.000 0.00 0.00 0.00 3.50
167 168 5.719173 TGCATGTAGAAAATTTAGCCAACC 58.281 37.500 0.00 0.00 0.00 3.77
168 169 6.389906 ACTGCATGTAGAAAATTTAGCCAAC 58.610 36.000 18.40 0.00 0.00 3.77
169 170 6.588719 ACTGCATGTAGAAAATTTAGCCAA 57.411 33.333 18.40 0.00 0.00 4.52
183 184 6.280855 TCTTCAAACTAGCTACTGCATGTA 57.719 37.500 0.00 0.00 42.74 2.29
184 185 5.152623 TCTTCAAACTAGCTACTGCATGT 57.847 39.130 0.00 0.00 42.74 3.21
185 186 4.569966 CCTCTTCAAACTAGCTACTGCATG 59.430 45.833 0.00 0.00 42.74 4.06
186 187 4.764172 CCTCTTCAAACTAGCTACTGCAT 58.236 43.478 0.00 0.00 42.74 3.96
187 188 3.617531 GCCTCTTCAAACTAGCTACTGCA 60.618 47.826 0.00 0.00 42.74 4.41
188 189 2.933260 GCCTCTTCAAACTAGCTACTGC 59.067 50.000 0.00 0.00 40.05 4.40
189 190 4.193826 TGCCTCTTCAAACTAGCTACTG 57.806 45.455 0.00 0.00 0.00 2.74
190 191 4.467795 TGATGCCTCTTCAAACTAGCTACT 59.532 41.667 0.00 0.00 0.00 2.57
191 192 4.759782 TGATGCCTCTTCAAACTAGCTAC 58.240 43.478 0.00 0.00 0.00 3.58
192 193 5.178797 GTTGATGCCTCTTCAAACTAGCTA 58.821 41.667 0.00 0.00 35.03 3.32
193 194 3.988976 TGATGCCTCTTCAAACTAGCT 57.011 42.857 0.00 0.00 0.00 3.32
194 195 3.181516 CGTTGATGCCTCTTCAAACTAGC 60.182 47.826 0.00 0.00 35.03 3.42
195 196 4.245660 TCGTTGATGCCTCTTCAAACTAG 58.754 43.478 0.00 0.00 35.03 2.57
196 197 4.245660 CTCGTTGATGCCTCTTCAAACTA 58.754 43.478 0.00 0.00 35.03 2.24
197 198 3.070018 CTCGTTGATGCCTCTTCAAACT 58.930 45.455 0.00 0.00 35.03 2.66
198 199 2.413371 GCTCGTTGATGCCTCTTCAAAC 60.413 50.000 0.00 0.00 35.03 2.93
199 200 1.806542 GCTCGTTGATGCCTCTTCAAA 59.193 47.619 0.00 0.00 35.03 2.69
200 201 1.442769 GCTCGTTGATGCCTCTTCAA 58.557 50.000 0.00 0.00 0.00 2.69
201 202 0.391661 GGCTCGTTGATGCCTCTTCA 60.392 55.000 0.00 0.00 45.26 3.02
202 203 1.424493 CGGCTCGTTGATGCCTCTTC 61.424 60.000 0.00 0.00 46.42 2.87
203 204 1.448540 CGGCTCGTTGATGCCTCTT 60.449 57.895 0.00 0.00 46.42 2.85
204 205 2.185350 CGGCTCGTTGATGCCTCT 59.815 61.111 0.00 0.00 46.42 3.69
205 206 2.167861 GTCGGCTCGTTGATGCCTC 61.168 63.158 0.00 0.00 46.42 4.70
206 207 2.125512 GTCGGCTCGTTGATGCCT 60.126 61.111 0.00 0.00 46.42 4.75
207 208 3.195698 GGTCGGCTCGTTGATGCC 61.196 66.667 0.00 0.00 45.25 4.40
208 209 1.766143 GATGGTCGGCTCGTTGATGC 61.766 60.000 0.00 0.00 0.00 3.91
209 210 1.482621 CGATGGTCGGCTCGTTGATG 61.483 60.000 0.00 0.00 36.00 3.07
210 211 1.226974 CGATGGTCGGCTCGTTGAT 60.227 57.895 0.00 0.00 36.00 2.57
211 212 2.180769 CGATGGTCGGCTCGTTGA 59.819 61.111 0.00 0.00 36.00 3.18
212 213 2.126071 ACGATGGTCGGCTCGTTG 60.126 61.111 0.00 0.00 45.15 4.10
215 216 1.445410 TCAAACGATGGTCGGCTCG 60.445 57.895 4.28 0.00 45.59 5.03
216 217 1.359459 GGTCAAACGATGGTCGGCTC 61.359 60.000 4.28 0.00 45.59 4.70
217 218 1.375523 GGTCAAACGATGGTCGGCT 60.376 57.895 4.28 0.00 45.59 5.52
218 219 1.024579 ATGGTCAAACGATGGTCGGC 61.025 55.000 4.28 0.00 45.59 5.54
219 220 1.448985 AATGGTCAAACGATGGTCGG 58.551 50.000 4.28 0.00 45.59 4.79
220 221 3.552604 AAAATGGTCAAACGATGGTCG 57.447 42.857 0.00 0.00 46.93 4.79
221 222 6.386654 ACATAAAAATGGTCAAACGATGGTC 58.613 36.000 0.00 0.00 0.00 4.02
222 223 6.339587 ACATAAAAATGGTCAAACGATGGT 57.660 33.333 0.00 0.00 0.00 3.55
223 224 7.810282 TGTTACATAAAAATGGTCAAACGATGG 59.190 33.333 0.00 0.00 0.00 3.51
224 225 8.735303 TGTTACATAAAAATGGTCAAACGATG 57.265 30.769 0.00 0.00 0.00 3.84
225 226 9.921637 ATTGTTACATAAAAATGGTCAAACGAT 57.078 25.926 0.00 0.00 0.00 3.73
226 227 9.751542 AATTGTTACATAAAAATGGTCAAACGA 57.248 25.926 0.00 0.00 0.00 3.85
234 235 9.919348 GCAATGCTAATTGTTACATAAAAATGG 57.081 29.630 0.00 0.00 44.34 3.16
273 274 9.944376 TCTCTTTATTAGCTTGTGATAGTTGTT 57.056 29.630 0.00 0.00 0.00 2.83
274 275 9.593134 CTCTCTTTATTAGCTTGTGATAGTTGT 57.407 33.333 0.00 0.00 0.00 3.32
275 276 9.039870 CCTCTCTTTATTAGCTTGTGATAGTTG 57.960 37.037 0.00 0.00 0.00 3.16
276 277 8.763601 ACCTCTCTTTATTAGCTTGTGATAGTT 58.236 33.333 0.00 0.00 0.00 2.24
277 278 8.200792 CACCTCTCTTTATTAGCTTGTGATAGT 58.799 37.037 0.00 0.00 0.00 2.12
278 279 8.417106 TCACCTCTCTTTATTAGCTTGTGATAG 58.583 37.037 0.00 0.00 0.00 2.08
279 280 8.306313 TCACCTCTCTTTATTAGCTTGTGATA 57.694 34.615 0.00 0.00 0.00 2.15
280 281 7.187824 TCACCTCTCTTTATTAGCTTGTGAT 57.812 36.000 0.00 0.00 0.00 3.06
281 282 6.605471 TCACCTCTCTTTATTAGCTTGTGA 57.395 37.500 0.00 0.00 0.00 3.58
282 283 7.856145 AATCACCTCTCTTTATTAGCTTGTG 57.144 36.000 0.00 0.00 0.00 3.33
283 284 9.553064 CATAATCACCTCTCTTTATTAGCTTGT 57.447 33.333 0.00 0.00 0.00 3.16
284 285 9.770097 TCATAATCACCTCTCTTTATTAGCTTG 57.230 33.333 0.00 0.00 0.00 4.01
286 287 9.941325 CATCATAATCACCTCTCTTTATTAGCT 57.059 33.333 0.00 0.00 0.00 3.32
287 288 9.935241 TCATCATAATCACCTCTCTTTATTAGC 57.065 33.333 0.00 0.00 0.00 3.09
291 292 9.775854 CTTGTCATCATAATCACCTCTCTTTAT 57.224 33.333 0.00 0.00 0.00 1.40
292 293 8.981659 TCTTGTCATCATAATCACCTCTCTTTA 58.018 33.333 0.00 0.00 0.00 1.85
293 294 7.855375 TCTTGTCATCATAATCACCTCTCTTT 58.145 34.615 0.00 0.00 0.00 2.52
294 295 7.429374 TCTTGTCATCATAATCACCTCTCTT 57.571 36.000 0.00 0.00 0.00 2.85
295 296 7.429374 TTCTTGTCATCATAATCACCTCTCT 57.571 36.000 0.00 0.00 0.00 3.10
296 297 8.674263 ATTTCTTGTCATCATAATCACCTCTC 57.326 34.615 0.00 0.00 0.00 3.20
299 300 9.347240 CCTTATTTCTTGTCATCATAATCACCT 57.653 33.333 0.00 0.00 0.00 4.00
300 301 8.078596 GCCTTATTTCTTGTCATCATAATCACC 58.921 37.037 0.00 0.00 0.00 4.02
301 302 8.623903 TGCCTTATTTCTTGTCATCATAATCAC 58.376 33.333 0.00 0.00 0.00 3.06
311 312 7.575414 TTTAGTGTTGCCTTATTTCTTGTCA 57.425 32.000 0.00 0.00 0.00 3.58
345 346 6.496565 TGGGACATGAAAATTTAGTTGGTCAT 59.503 34.615 0.00 0.00 0.00 3.06
369 370 6.436843 AAACTAATTCCGAAATACAGCCTG 57.563 37.500 0.00 0.00 0.00 4.85
407 408 9.944376 AGTTGAGAACTTATTTGCAGTAATAGA 57.056 29.630 0.00 0.00 39.04 1.98
417 418 8.600449 AGAACTGAGAGTTGAGAACTTATTTG 57.400 34.615 0.00 0.00 43.03 2.32
418 419 7.875554 GGAGAACTGAGAGTTGAGAACTTATTT 59.124 37.037 0.00 0.00 43.03 1.40
424 425 4.864704 AGGAGAACTGAGAGTTGAGAAC 57.135 45.455 0.00 0.00 38.80 3.01
486 488 0.537188 ACCGGGACATAGCAAGACAG 59.463 55.000 6.32 0.00 0.00 3.51
487 489 1.754803 CTACCGGGACATAGCAAGACA 59.245 52.381 6.32 0.00 0.00 3.41
488 490 2.029623 TCTACCGGGACATAGCAAGAC 58.970 52.381 6.32 0.00 0.00 3.01
489 491 2.447408 TCTACCGGGACATAGCAAGA 57.553 50.000 6.32 0.00 0.00 3.02
490 492 3.827302 AGTATCTACCGGGACATAGCAAG 59.173 47.826 6.32 0.00 0.00 4.01
491 493 3.840991 AGTATCTACCGGGACATAGCAA 58.159 45.455 6.32 0.00 0.00 3.91
492 494 3.520691 AGTATCTACCGGGACATAGCA 57.479 47.619 6.32 0.00 0.00 3.49
493 495 6.147492 CGATATAGTATCTACCGGGACATAGC 59.853 46.154 6.32 0.00 0.00 2.97
494 496 6.649973 CCGATATAGTATCTACCGGGACATAG 59.350 46.154 6.32 0.00 32.64 2.23
495 497 6.100279 ACCGATATAGTATCTACCGGGACATA 59.900 42.308 6.32 0.00 39.73 2.29
496 498 5.104193 ACCGATATAGTATCTACCGGGACAT 60.104 44.000 6.32 0.00 39.73 3.06
497 499 4.225942 ACCGATATAGTATCTACCGGGACA 59.774 45.833 6.32 0.00 39.73 4.02
498 500 4.775236 ACCGATATAGTATCTACCGGGAC 58.225 47.826 6.32 0.00 39.73 4.46
499 501 5.441718 AACCGATATAGTATCTACCGGGA 57.558 43.478 6.32 0.00 39.73 5.14
500 502 6.586344 TCTAACCGATATAGTATCTACCGGG 58.414 44.000 6.32 0.00 39.73 5.73
501 503 8.674263 AATCTAACCGATATAGTATCTACCGG 57.326 38.462 0.00 0.00 41.04 5.28
566 568 8.677300 GGTGACATAATATGCAAGAGAGAAAAA 58.323 33.333 0.00 0.00 0.00 1.94
567 569 8.049117 AGGTGACATAATATGCAAGAGAGAAAA 58.951 33.333 0.00 0.00 0.00 2.29
568 570 7.496920 CAGGTGACATAATATGCAAGAGAGAAA 59.503 37.037 0.00 0.00 0.00 2.52
569 571 6.988580 CAGGTGACATAATATGCAAGAGAGAA 59.011 38.462 0.00 0.00 0.00 2.87
570 572 6.324770 TCAGGTGACATAATATGCAAGAGAGA 59.675 38.462 0.00 0.00 0.00 3.10
571 573 6.423302 GTCAGGTGACATAATATGCAAGAGAG 59.577 42.308 5.21 0.00 44.18 3.20
572 574 6.283694 GTCAGGTGACATAATATGCAAGAGA 58.716 40.000 5.21 0.00 44.18 3.10
573 575 6.536731 GTCAGGTGACATAATATGCAAGAG 57.463 41.667 5.21 0.00 44.18 2.85
597 599 5.010933 AGGTCTTAGTCGACTGAAATCTCA 58.989 41.667 28.12 1.88 34.38 3.27
598 600 5.570234 AGGTCTTAGTCGACTGAAATCTC 57.430 43.478 28.12 10.93 34.38 2.75
599 601 5.066764 GCTAGGTCTTAGTCGACTGAAATCT 59.933 44.000 28.12 14.92 34.38 2.40
600 602 5.066764 AGCTAGGTCTTAGTCGACTGAAATC 59.933 44.000 28.12 7.12 34.38 2.17
601 603 4.951094 AGCTAGGTCTTAGTCGACTGAAAT 59.049 41.667 28.12 11.39 34.38 2.17
602 604 4.333690 AGCTAGGTCTTAGTCGACTGAAA 58.666 43.478 28.12 14.12 34.38 2.69
603 605 3.952931 AGCTAGGTCTTAGTCGACTGAA 58.047 45.455 28.12 15.87 34.38 3.02
604 606 3.630892 AGCTAGGTCTTAGTCGACTGA 57.369 47.619 28.12 19.13 34.38 3.41
605 607 4.034279 GTGTAGCTAGGTCTTAGTCGACTG 59.966 50.000 28.12 12.46 34.38 3.51
606 608 4.190772 GTGTAGCTAGGTCTTAGTCGACT 58.809 47.826 23.66 23.66 34.38 4.18
607 609 3.312146 GGTGTAGCTAGGTCTTAGTCGAC 59.688 52.174 7.70 7.70 0.00 4.20
608 610 3.539604 GGTGTAGCTAGGTCTTAGTCGA 58.460 50.000 0.00 0.00 0.00 4.20
609 611 2.617774 GGGTGTAGCTAGGTCTTAGTCG 59.382 54.545 0.00 0.00 0.00 4.18
610 612 3.629087 TGGGTGTAGCTAGGTCTTAGTC 58.371 50.000 0.00 0.00 0.00 2.59
611 613 3.752359 TGGGTGTAGCTAGGTCTTAGT 57.248 47.619 0.00 0.00 0.00 2.24
612 614 6.726490 TTAATGGGTGTAGCTAGGTCTTAG 57.274 41.667 0.00 0.00 0.00 2.18
613 615 7.499200 TTTTAATGGGTGTAGCTAGGTCTTA 57.501 36.000 0.00 0.00 0.00 2.10
614 616 6.382919 TTTTAATGGGTGTAGCTAGGTCTT 57.617 37.500 0.00 0.00 0.00 3.01
615 617 6.382919 TTTTTAATGGGTGTAGCTAGGTCT 57.617 37.500 0.00 0.00 0.00 3.85
635 637 8.531982 GTCCCCTAAAATTTAGCTGATCTTTTT 58.468 33.333 7.22 0.00 0.00 1.94
636 638 7.124298 GGTCCCCTAAAATTTAGCTGATCTTTT 59.876 37.037 7.22 0.64 0.00 2.27
637 639 6.607600 GGTCCCCTAAAATTTAGCTGATCTTT 59.392 38.462 7.22 0.00 0.00 2.52
638 640 6.129874 GGTCCCCTAAAATTTAGCTGATCTT 58.870 40.000 7.22 0.00 0.00 2.40
639 641 5.193728 TGGTCCCCTAAAATTTAGCTGATCT 59.806 40.000 7.22 0.00 0.00 2.75
640 642 5.445964 TGGTCCCCTAAAATTTAGCTGATC 58.554 41.667 7.22 6.64 0.00 2.92
641 643 5.466127 TGGTCCCCTAAAATTTAGCTGAT 57.534 39.130 7.22 0.00 0.00 2.90
642 644 4.938575 TGGTCCCCTAAAATTTAGCTGA 57.061 40.909 7.22 3.36 0.00 4.26
643 645 5.016831 AGTTGGTCCCCTAAAATTTAGCTG 58.983 41.667 7.22 1.16 0.00 4.24
644 646 5.270979 AGTTGGTCCCCTAAAATTTAGCT 57.729 39.130 7.22 0.00 0.00 3.32
645 647 7.470935 TTTAGTTGGTCCCCTAAAATTTAGC 57.529 36.000 7.22 0.00 31.92 3.09
648 650 9.787435 GAAAATTTAGTTGGTCCCCTAAAATTT 57.213 29.630 16.56 16.56 38.22 1.82
649 651 8.939932 TGAAAATTTAGTTGGTCCCCTAAAATT 58.060 29.630 12.42 9.09 36.89 1.82
650 652 8.499288 TGAAAATTTAGTTGGTCCCCTAAAAT 57.501 30.769 12.42 4.67 36.89 1.82
651 653 7.916077 TGAAAATTTAGTTGGTCCCCTAAAA 57.084 32.000 12.42 0.00 36.89 1.52
652 654 7.038658 CCATGAAAATTTAGTTGGTCCCCTAAA 60.039 37.037 11.31 11.31 37.50 1.85
653 655 6.439058 CCATGAAAATTTAGTTGGTCCCCTAA 59.561 38.462 0.00 0.00 0.00 2.69
654 656 5.955355 CCATGAAAATTTAGTTGGTCCCCTA 59.045 40.000 0.00 0.00 0.00 3.53
655 657 4.777366 CCATGAAAATTTAGTTGGTCCCCT 59.223 41.667 0.00 0.00 0.00 4.79
656 658 4.530553 ACCATGAAAATTTAGTTGGTCCCC 59.469 41.667 11.20 0.00 32.08 4.81
657 659 5.738619 ACCATGAAAATTTAGTTGGTCCC 57.261 39.130 11.20 0.00 32.08 4.46
658 660 6.754193 TCAACCATGAAAATTTAGTTGGTCC 58.246 36.000 15.33 0.00 36.49 4.46
688 690 5.870433 TGGATACATACATTTCGTTCGTGTT 59.130 36.000 0.00 0.00 46.17 3.32
759 762 2.252127 ATTTGCGTGGCCATCGAACG 62.252 55.000 25.37 17.89 40.22 3.95
763 766 1.976478 TTCGATTTGCGTGGCCATCG 61.976 55.000 9.72 13.86 40.07 3.84
821 825 2.203266 GGTGGCCTATGGAGCTGC 60.203 66.667 3.32 0.00 0.00 5.25
840 844 4.419280 GCTTCTCTTTTCTTTATGCTGGC 58.581 43.478 0.00 0.00 0.00 4.85
948 955 2.602267 GGTTTTTGGGGACGGGGG 60.602 66.667 0.00 0.00 0.00 5.40
949 956 1.791695 TAGGGTTTTTGGGGACGGGG 61.792 60.000 0.00 0.00 0.00 5.73
1391 1414 4.440250 CGTATGAGAACCGGAGAATTCAGT 60.440 45.833 9.46 0.00 0.00 3.41
1392 1415 4.045104 CGTATGAGAACCGGAGAATTCAG 58.955 47.826 9.46 0.00 0.00 3.02
1393 1416 3.181479 CCGTATGAGAACCGGAGAATTCA 60.181 47.826 9.46 4.85 44.41 2.57
1394 1417 3.381949 CCGTATGAGAACCGGAGAATTC 58.618 50.000 9.46 0.24 44.41 2.17
1404 1427 2.624838 TCGAATACCCCCGTATGAGAAC 59.375 50.000 0.00 0.00 35.29 3.01
1417 1441 3.625764 TGCAGTAAAGGCATTCGAATACC 59.374 43.478 18.24 18.24 36.11 2.73
1418 1442 4.875544 TGCAGTAAAGGCATTCGAATAC 57.124 40.909 10.97 4.88 36.11 1.89
1459 1483 1.302993 CGATGGGGAAACGGTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
1463 1487 2.119484 TTGCTCGATGGGGAAACGGT 62.119 55.000 0.00 0.00 0.00 4.83
1498 1522 1.664306 GTTAGTATCGCGGGGAGGG 59.336 63.158 6.13 0.00 0.00 4.30
1565 1589 9.692325 ATATCTCTCCAAAAATTAGTCAAAGCT 57.308 29.630 0.00 0.00 0.00 3.74
1584 1608 3.957497 ACGAAGCACCTTGAGATATCTCT 59.043 43.478 28.51 9.91 43.25 3.10
1585 1609 4.314740 ACGAAGCACCTTGAGATATCTC 57.685 45.455 23.47 23.47 43.15 2.75
1599 1623 5.457140 GTGATGTTCCAAATTAACGAAGCA 58.543 37.500 0.00 0.00 0.00 3.91
1741 1765 1.963515 ACTTGGGGCAAAAGATCACAC 59.036 47.619 5.52 0.00 0.00 3.82
1753 1778 1.371183 GGCTTGGAAAACTTGGGGC 59.629 57.895 0.00 0.00 0.00 5.80
1763 1788 1.202359 GCGAAAAGTTGTGGCTTGGAA 60.202 47.619 0.00 0.00 0.00 3.53
1934 1960 9.710900 CATACAGTCCAGTATATTAATGAAGCA 57.289 33.333 0.00 0.00 33.12 3.91
1935 1961 9.929180 TCATACAGTCCAGTATATTAATGAAGC 57.071 33.333 0.00 0.00 33.12 3.86
1938 1964 9.875691 GCATCATACAGTCCAGTATATTAATGA 57.124 33.333 0.00 0.00 33.12 2.57
1939 1965 9.881649 AGCATCATACAGTCCAGTATATTAATG 57.118 33.333 0.00 0.00 33.12 1.90
1940 1966 9.881649 CAGCATCATACAGTCCAGTATATTAAT 57.118 33.333 0.00 0.00 33.12 1.40
1955 1981 2.323599 CTCCTCTCCCAGCATCATACA 58.676 52.381 0.00 0.00 0.00 2.29
1985 2011 1.134367 CAGGACGCGGAGAAAGACATA 59.866 52.381 12.47 0.00 0.00 2.29
2009 2035 2.672996 GTGAACATGGCCGCCAGT 60.673 61.111 18.96 12.85 36.75 4.00
2010 2036 2.048023 ATGTGAACATGGCCGCCAG 61.048 57.895 18.96 12.21 36.75 4.85
2011 2037 2.035469 ATGTGAACATGGCCGCCA 59.965 55.556 16.17 16.17 38.19 5.69
2068 2119 7.437862 TGAATGTTCCAAACTTGCTTATGAAAC 59.562 33.333 0.00 0.00 0.00 2.78
2222 2273 4.024133 TCGTGAAATGGTTCTCATTGTGTG 60.024 41.667 0.00 0.00 44.68 3.82
2301 2352 1.143813 CATGATAGGGGCCAGGTTCT 58.856 55.000 4.39 0.00 0.00 3.01
2739 2918 8.651589 ATGCACTATATTGTCTAGGCTAACTA 57.348 34.615 0.00 0.00 0.00 2.24
2753 2932 9.293404 AGCATCTAAACATCAATGCACTATATT 57.707 29.630 8.68 0.00 45.39 1.28
2754 2933 8.859236 AGCATCTAAACATCAATGCACTATAT 57.141 30.769 8.68 0.00 45.39 0.86
2755 2934 8.681486 AAGCATCTAAACATCAATGCACTATA 57.319 30.769 8.68 0.00 45.39 1.31
2758 2937 5.163581 GGAAGCATCTAAACATCAATGCACT 60.164 40.000 8.68 0.00 45.39 4.40
2759 2938 5.039333 GGAAGCATCTAAACATCAATGCAC 58.961 41.667 8.68 2.87 45.39 4.57
2760 2939 4.705991 TGGAAGCATCTAAACATCAATGCA 59.294 37.500 8.68 0.00 45.39 3.96
2761 2940 5.163581 ACTGGAAGCATCTAAACATCAATGC 60.164 40.000 0.00 0.00 43.75 3.56
2940 3134 1.001597 GATTACGCTCCCTAGACACCG 60.002 57.143 0.00 0.00 0.00 4.94
3041 3235 0.745486 TGCTCAGCATAAGCACGCAT 60.745 50.000 0.00 0.00 44.51 4.73
3219 3417 1.887088 CGGACGGAGGGAGTAGCATAT 60.887 57.143 0.00 0.00 0.00 1.78
3225 3423 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3226 3424 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3227 3425 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3228 3426 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3229 3427 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3230 3428 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3231 3429 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3232 3430 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
3233 3431 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
3234 3432 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
3235 3433 6.806388 TTTTTAGGACAAGTATTTCCGGAC 57.194 37.500 1.83 0.00 36.95 4.79
3236 3434 6.376018 CCATTTTTAGGACAAGTATTTCCGGA 59.624 38.462 0.00 0.00 36.95 5.14
3237 3435 6.152154 ACCATTTTTAGGACAAGTATTTCCGG 59.848 38.462 0.00 0.00 36.95 5.14
3238 3436 7.153217 ACCATTTTTAGGACAAGTATTTCCG 57.847 36.000 0.00 0.00 36.95 4.30
3239 3437 8.581578 TCAACCATTTTTAGGACAAGTATTTCC 58.418 33.333 0.00 0.00 0.00 3.13
3240 3438 9.974980 TTCAACCATTTTTAGGACAAGTATTTC 57.025 29.630 0.00 0.00 0.00 2.17
3243 3441 9.533831 AGATTCAACCATTTTTAGGACAAGTAT 57.466 29.630 0.00 0.00 0.00 2.12
3244 3442 8.934023 AGATTCAACCATTTTTAGGACAAGTA 57.066 30.769 0.00 0.00 0.00 2.24
3245 3443 7.839680 AGATTCAACCATTTTTAGGACAAGT 57.160 32.000 0.00 0.00 0.00 3.16
3246 3444 9.231297 TCTAGATTCAACCATTTTTAGGACAAG 57.769 33.333 0.00 0.00 0.00 3.16
3247 3445 9.010029 GTCTAGATTCAACCATTTTTAGGACAA 57.990 33.333 0.00 0.00 0.00 3.18
3248 3446 8.383175 AGTCTAGATTCAACCATTTTTAGGACA 58.617 33.333 0.00 0.00 0.00 4.02
3249 3447 8.794335 AGTCTAGATTCAACCATTTTTAGGAC 57.206 34.615 0.00 0.00 0.00 3.85
3290 3488 9.403583 GTCCTAAAACTGGATAAAATGGATGTA 57.596 33.333 0.00 0.00 35.87 2.29
3291 3489 7.893302 TGTCCTAAAACTGGATAAAATGGATGT 59.107 33.333 0.00 0.00 35.87 3.06
3292 3490 8.292444 TGTCCTAAAACTGGATAAAATGGATG 57.708 34.615 0.00 0.00 35.87 3.51
3293 3491 8.893563 TTGTCCTAAAACTGGATAAAATGGAT 57.106 30.769 0.00 0.00 35.87 3.41
3294 3492 7.947890 ACTTGTCCTAAAACTGGATAAAATGGA 59.052 33.333 0.00 0.00 34.98 3.41
3295 3493 8.122472 ACTTGTCCTAAAACTGGATAAAATGG 57.878 34.615 0.00 0.00 34.98 3.16
3301 3499 9.158233 CGAAAATACTTGTCCTAAAACTGGATA 57.842 33.333 0.00 0.00 35.87 2.59
3302 3500 7.120726 CCGAAAATACTTGTCCTAAAACTGGAT 59.879 37.037 0.00 0.00 35.87 3.41
3303 3501 6.428771 CCGAAAATACTTGTCCTAAAACTGGA 59.571 38.462 0.00 0.00 0.00 3.86
3304 3502 6.428771 TCCGAAAATACTTGTCCTAAAACTGG 59.571 38.462 0.00 0.00 0.00 4.00
3305 3503 7.295930 GTCCGAAAATACTTGTCCTAAAACTG 58.704 38.462 0.00 0.00 0.00 3.16
3306 3504 6.146673 CGTCCGAAAATACTTGTCCTAAAACT 59.853 38.462 0.00 0.00 0.00 2.66
3307 3505 6.301861 CGTCCGAAAATACTTGTCCTAAAAC 58.698 40.000 0.00 0.00 0.00 2.43
3308 3506 5.409214 CCGTCCGAAAATACTTGTCCTAAAA 59.591 40.000 0.00 0.00 0.00 1.52
3309 3507 4.931002 CCGTCCGAAAATACTTGTCCTAAA 59.069 41.667 0.00 0.00 0.00 1.85
3310 3508 4.220382 TCCGTCCGAAAATACTTGTCCTAA 59.780 41.667 0.00 0.00 0.00 2.69
3311 3509 3.763360 TCCGTCCGAAAATACTTGTCCTA 59.237 43.478 0.00 0.00 0.00 2.94
3312 3510 2.564062 TCCGTCCGAAAATACTTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
3313 3511 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
3314 3512 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3315 3513 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3316 3514 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3317 3515 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3318 3516 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3319 3517 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3320 3518 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3321 3519 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
3322 3520 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
3323 3521 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3324 3522 2.301346 GTAATACTCCCTCCGTCCGAA 58.699 52.381 0.00 0.00 0.00 4.30
3325 3523 1.212688 TGTAATACTCCCTCCGTCCGA 59.787 52.381 0.00 0.00 0.00 4.55
3326 3524 1.683943 TGTAATACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
3327 3525 3.029570 AGTTGTAATACTCCCTCCGTCC 58.970 50.000 0.00 0.00 0.00 4.79
3328 3526 3.698040 TCAGTTGTAATACTCCCTCCGTC 59.302 47.826 0.00 0.00 0.00 4.79
3329 3527 3.705051 TCAGTTGTAATACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
3330 3528 4.430908 GTTCAGTTGTAATACTCCCTCCG 58.569 47.826 0.00 0.00 0.00 4.63
3331 3529 4.470304 AGGTTCAGTTGTAATACTCCCTCC 59.530 45.833 0.00 0.00 0.00 4.30
3332 3530 5.187186 TCAGGTTCAGTTGTAATACTCCCTC 59.813 44.000 0.00 0.00 0.00 4.30
3333 3531 5.091552 TCAGGTTCAGTTGTAATACTCCCT 58.908 41.667 0.00 0.00 0.00 4.20
3334 3532 5.416271 TCAGGTTCAGTTGTAATACTCCC 57.584 43.478 0.00 0.00 0.00 4.30
3335 3533 7.707035 CACTATCAGGTTCAGTTGTAATACTCC 59.293 40.741 0.00 0.00 0.00 3.85
3336 3534 7.707035 CCACTATCAGGTTCAGTTGTAATACTC 59.293 40.741 0.00 0.00 0.00 2.59
3337 3535 7.364762 CCCACTATCAGGTTCAGTTGTAATACT 60.365 40.741 0.00 0.00 0.00 2.12
3338 3536 6.761714 CCCACTATCAGGTTCAGTTGTAATAC 59.238 42.308 0.00 0.00 0.00 1.89
3455 3655 1.556911 AGCGGATGTCTTCAACTCCAT 59.443 47.619 0.00 0.00 0.00 3.41
3615 3815 9.947897 CACAAAACATAGAAACATACTACGTAC 57.052 33.333 0.00 0.00 0.00 3.67
3687 3887 8.812972 CAGAGCCTTACATTATACCTATAACCA 58.187 37.037 0.00 0.00 31.57 3.67
3765 3965 5.637810 TCAAAGCTCTCCGTTACAAACATAG 59.362 40.000 0.00 0.00 0.00 2.23
3911 4113 6.653320 TCAGGTTTGCCACTTATACAAGTTAG 59.347 38.462 0.00 0.00 42.51 2.34
3973 4195 7.850193 ACACAGGGTATAAATCAAAAATGCAT 58.150 30.769 0.00 0.00 0.00 3.96
4084 4307 9.182214 ACTGATACAGCACATGAATTTTAAGAT 57.818 29.630 0.00 0.00 34.37 2.40
4086 4309 7.699391 CCACTGATACAGCACATGAATTTTAAG 59.301 37.037 0.00 0.00 34.37 1.85
4144 4430 2.621668 GCACAAAAAGGAGAGGCCCTAT 60.622 50.000 0.00 0.00 34.95 2.57
4197 4483 8.641498 ACTTTTGAGAATGTGGATGTAATTCT 57.359 30.769 0.00 0.00 42.03 2.40
4333 4622 8.479280 GTTGCCTGCGTATGAATAATTTTTATG 58.521 33.333 0.00 0.00 0.00 1.90
4350 4639 0.589223 TTTAAAGACGGTTGCCTGCG 59.411 50.000 0.00 0.00 0.00 5.18
4356 4645 6.970613 GGCTATTACCATTTTAAAGACGGTTG 59.029 38.462 9.67 2.59 0.00 3.77
4406 4696 1.268899 CAAACTGCCTGGAAGCTTGAG 59.731 52.381 11.74 0.00 0.00 3.02
4452 4742 6.551227 ACAATAGAGATATAGTGCACACCTCA 59.449 38.462 21.04 8.49 0.00 3.86
4468 4758 6.608002 GGGAGGAGTTTCTCTTACAATAGAGA 59.392 42.308 0.00 0.00 46.74 3.10
4469 4759 6.381420 TGGGAGGAGTTTCTCTTACAATAGAG 59.619 42.308 0.00 0.00 42.46 2.43
4470 4760 6.261435 TGGGAGGAGTTTCTCTTACAATAGA 58.739 40.000 0.00 0.00 34.39 1.98
4471 4761 6.546428 TGGGAGGAGTTTCTCTTACAATAG 57.454 41.667 0.00 0.00 34.39 1.73
4472 4762 6.729100 TCTTGGGAGGAGTTTCTCTTACAATA 59.271 38.462 0.00 0.00 34.39 1.90
4473 4763 5.548056 TCTTGGGAGGAGTTTCTCTTACAAT 59.452 40.000 0.00 0.00 34.39 2.71
4474 4764 4.905456 TCTTGGGAGGAGTTTCTCTTACAA 59.095 41.667 0.00 0.00 34.39 2.41
4475 4765 4.489737 TCTTGGGAGGAGTTTCTCTTACA 58.510 43.478 0.00 0.00 34.39 2.41
4476 4766 5.187967 TCATCTTGGGAGGAGTTTCTCTTAC 59.812 44.000 0.00 0.00 34.39 2.34
4477 4767 5.342017 TCATCTTGGGAGGAGTTTCTCTTA 58.658 41.667 0.00 0.00 34.39 2.10
4478 4768 4.171234 TCATCTTGGGAGGAGTTTCTCTT 58.829 43.478 0.00 0.00 34.39 2.85
4479 4769 3.774216 CTCATCTTGGGAGGAGTTTCTCT 59.226 47.826 0.00 0.00 43.07 3.10
4480 4770 4.135747 CTCATCTTGGGAGGAGTTTCTC 57.864 50.000 0.00 0.00 43.07 2.87
4492 4782 0.329261 TGTGAAGGCCCTCATCTTGG 59.671 55.000 7.46 0.00 0.00 3.61
4493 4783 1.457346 GTGTGAAGGCCCTCATCTTG 58.543 55.000 7.46 0.00 0.00 3.02
4494 4784 0.329596 GGTGTGAAGGCCCTCATCTT 59.670 55.000 7.46 0.00 0.00 2.40
4495 4785 0.548682 AGGTGTGAAGGCCCTCATCT 60.549 55.000 7.46 3.37 0.00 2.90
4496 4786 0.107459 GAGGTGTGAAGGCCCTCATC 60.107 60.000 7.46 4.28 43.51 2.92
4497 4787 1.566298 GGAGGTGTGAAGGCCCTCAT 61.566 60.000 7.46 0.00 45.42 2.90
4498 4788 2.224159 GGAGGTGTGAAGGCCCTCA 61.224 63.158 0.00 0.00 45.42 3.86
4499 4789 2.671682 GGAGGTGTGAAGGCCCTC 59.328 66.667 0.00 0.00 43.35 4.30
4500 4790 2.936032 GGGAGGTGTGAAGGCCCT 60.936 66.667 0.00 0.00 35.86 5.19
4501 4791 4.410400 CGGGAGGTGTGAAGGCCC 62.410 72.222 0.00 0.00 35.40 5.80
4504 4794 4.760047 CGGCGGGAGGTGTGAAGG 62.760 72.222 0.00 0.00 0.00 3.46
4505 4795 4.760047 CCGGCGGGAGGTGTGAAG 62.760 72.222 20.56 0.00 34.06 3.02
4524 4814 2.533266 TGAAGATAAGGCAGATCGGC 57.467 50.000 9.58 9.58 41.61 5.54
4525 4815 3.750130 CCATTGAAGATAAGGCAGATCGG 59.250 47.826 0.00 0.00 0.00 4.18
4526 4816 3.188048 GCCATTGAAGATAAGGCAGATCG 59.812 47.826 0.00 0.00 44.59 3.69
4527 4817 3.505293 GGCCATTGAAGATAAGGCAGATC 59.495 47.826 0.00 0.00 46.96 2.75
4528 4818 3.139770 AGGCCATTGAAGATAAGGCAGAT 59.860 43.478 5.01 0.00 46.96 2.90
4529 4819 2.511218 AGGCCATTGAAGATAAGGCAGA 59.489 45.455 5.01 0.00 46.96 4.26
4530 4820 2.941480 AGGCCATTGAAGATAAGGCAG 58.059 47.619 5.01 0.00 46.96 4.85
4531 4821 3.386932 AAGGCCATTGAAGATAAGGCA 57.613 42.857 5.01 0.00 46.96 4.75
4532 4822 3.823304 CCTAAGGCCATTGAAGATAAGGC 59.177 47.826 5.01 0.00 44.48 4.35
4533 4823 4.401925 CCCTAAGGCCATTGAAGATAAGG 58.598 47.826 5.01 0.00 0.00 2.69
4548 4838 4.587056 GCCTCCATTGCCCTAAGG 57.413 61.111 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.