Multiple sequence alignment - TraesCS7D01G312400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G312400 chr7D 100.000 2312 0 0 1 2312 396124645 396126956 0.000000e+00 4270
1 TraesCS7D01G312400 chr7D 81.977 172 27 4 1792 1960 544315875 544316045 2.390000e-30 143
2 TraesCS7D01G312400 chr7B 95.868 847 28 3 610 1456 399259982 399260821 0.000000e+00 1363
3 TraesCS7D01G312400 chr7B 92.348 379 19 6 24 399 399259370 399259741 4.370000e-147 531
4 TraesCS7D01G312400 chr7B 90.535 243 21 2 1558 1799 399260818 399261059 1.030000e-83 320
5 TraesCS7D01G312400 chr7B 94.167 120 6 1 1453 1572 481653781 481653663 5.070000e-42 182
6 TraesCS7D01G312400 chr7B 88.971 136 10 5 484 617 209855071 209854939 1.840000e-36 163
7 TraesCS7D01G312400 chr7B 92.105 114 9 0 1987 2100 399261182 399261295 6.610000e-36 161
8 TraesCS7D01G312400 chr7B 84.713 157 23 1 1803 1959 558314384 558314229 3.080000e-34 156
9 TraesCS7D01G312400 chr7B 91.919 99 8 0 2214 2312 399261406 399261504 3.100000e-29 139
10 TraesCS7D01G312400 chr7A 94.805 847 30 9 611 1456 449703941 449704774 0.000000e+00 1308
11 TraesCS7D01G312400 chr7A 92.258 310 17 3 20 328 449703623 449703926 1.270000e-117 433
12 TraesCS7D01G312400 chr7A 90.698 86 8 0 2015 2100 449720869 449720954 5.220000e-22 115
13 TraesCS7D01G312400 chr5B 97.222 108 3 0 1454 1561 78422387 78422280 1.410000e-42 183
14 TraesCS7D01G312400 chr5B 96.364 110 4 0 1452 1561 90515278 90515387 5.070000e-42 182
15 TraesCS7D01G312400 chr1B 96.396 111 4 0 1451 1561 624662915 624663025 1.410000e-42 183
16 TraesCS7D01G312400 chr3B 94.872 117 5 1 1455 1571 217574986 217575101 5.070000e-42 182
17 TraesCS7D01G312400 chr3B 95.536 112 5 0 1451 1562 1592110 1591999 1.830000e-41 180
18 TraesCS7D01G312400 chr3B 91.406 128 8 3 1436 1561 214547495 214547621 3.050000e-39 172
19 TraesCS7D01G312400 chr3B 85.000 160 22 2 1801 1960 739655713 739655556 6.610000e-36 161
20 TraesCS7D01G312400 chr5A 95.536 112 5 0 1451 1562 337822984 337823095 1.830000e-41 180
21 TraesCS7D01G312400 chr4A 85.890 163 23 0 1798 1960 614112316 614112478 8.490000e-40 174
22 TraesCS7D01G312400 chr3A 90.698 129 9 2 1452 1578 621834573 621834700 3.950000e-38 169
23 TraesCS7D01G312400 chrUn 84.713 157 24 0 1800 1956 84908220 84908376 8.550000e-35 158
24 TraesCS7D01G312400 chrUn 83.851 161 25 1 1803 1963 311695280 311695439 3.980000e-33 152
25 TraesCS7D01G312400 chr2D 83.537 164 26 1 1801 1964 138293834 138293672 3.980000e-33 152
26 TraesCS7D01G312400 chr1D 83.648 159 26 0 1798 1956 487323578 487323736 1.430000e-32 150
27 TraesCS7D01G312400 chr1D 82.558 172 25 4 1792 1959 89757405 89757235 1.850000e-31 147
28 TraesCS7D01G312400 chr2A 83.721 129 18 3 484 609 4068662 4068534 4.040000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G312400 chr7D 396124645 396126956 2311 False 4270.0 4270 100.0000 1 2312 1 chr7D.!!$F1 2311
1 TraesCS7D01G312400 chr7B 399259370 399261504 2134 False 502.8 1363 92.5550 24 2312 5 chr7B.!!$F1 2288
2 TraesCS7D01G312400 chr7A 449703623 449704774 1151 False 870.5 1308 93.5315 20 1456 2 chr7A.!!$F2 1436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 572 0.036952 ATGACAACTCAGCAGGTCCG 60.037 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1600 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.513666 CTAAGCCGCCATTGCCGA 60.514 61.111 0.00 0.00 0.00 5.54
53 54 1.893808 CTAAGCCGCCATTGCCGAT 60.894 57.895 0.00 0.00 0.00 4.18
54 55 2.121564 CTAAGCCGCCATTGCCGATG 62.122 60.000 0.00 0.00 35.42 3.84
139 140 4.176752 GGCGGTGTCTCCATCCCC 62.177 72.222 0.00 0.00 35.57 4.81
198 199 2.818274 GTGGGGTCGCGTCCATTC 60.818 66.667 23.47 12.59 35.28 2.67
253 255 1.370900 CGTGCAAGTTGGAGCAAGC 60.371 57.895 4.75 0.00 43.20 4.01
256 258 1.081840 GCAAGTTGGAGCAAGCGTC 60.082 57.895 4.75 0.00 0.00 5.19
277 280 1.029408 AACTGCTGTGACGCCAACAA 61.029 50.000 0.00 0.00 0.00 2.83
285 288 0.460459 TGACGCCAACAAACGACAGA 60.460 50.000 0.00 0.00 30.93 3.41
296 299 1.321474 AACGACAGACACCGGTTCTA 58.679 50.000 2.97 0.00 0.00 2.10
338 343 1.999735 TGTCGAGATGGCGATGTTTTC 59.000 47.619 0.00 0.00 42.82 2.29
353 358 6.610741 GATGTTTTCTTCATCGGATAAGCT 57.389 37.500 0.00 0.00 33.60 3.74
365 370 5.643379 TCGGATAAGCTTTCAGCAAATTT 57.357 34.783 3.20 0.00 45.56 1.82
371 376 3.999046 AGCTTTCAGCAAATTTCCCAAG 58.001 40.909 0.00 0.00 45.56 3.61
381 386 6.651643 CAGCAAATTTCCCAAGAATGAAATGA 59.348 34.615 0.00 0.00 39.59 2.57
382 387 6.877322 AGCAAATTTCCCAAGAATGAAATGAG 59.123 34.615 0.00 0.00 39.59 2.90
388 393 8.821686 TTTCCCAAGAATGAAATGAGCTATTA 57.178 30.769 0.00 0.00 0.00 0.98
394 399 9.880064 CAAGAATGAAATGAGCTATTACATCAG 57.120 33.333 0.00 0.00 0.00 2.90
400 405 9.671279 TGAAATGAGCTATTACATCAGAAAAGA 57.329 29.630 0.00 0.00 0.00 2.52
403 408 9.896645 AATGAGCTATTACATCAGAAAAGAAGA 57.103 29.630 0.00 0.00 0.00 2.87
404 409 9.896645 ATGAGCTATTACATCAGAAAAGAAGAA 57.103 29.630 0.00 0.00 0.00 2.52
405 410 9.376075 TGAGCTATTACATCAGAAAAGAAGAAG 57.624 33.333 0.00 0.00 0.00 2.85
406 411 9.593134 GAGCTATTACATCAGAAAAGAAGAAGA 57.407 33.333 0.00 0.00 0.00 2.87
407 412 9.950496 AGCTATTACATCAGAAAAGAAGAAGAA 57.050 29.630 0.00 0.00 0.00 2.52
413 418 8.915057 ACATCAGAAAAGAAGAAGAAGAATGA 57.085 30.769 0.00 0.00 0.00 2.57
414 419 9.347240 ACATCAGAAAAGAAGAAGAAGAATGAA 57.653 29.630 0.00 0.00 0.00 2.57
418 423 9.408069 CAGAAAAGAAGAAGAAGAATGAAATGG 57.592 33.333 0.00 0.00 0.00 3.16
440 445 6.650120 TGGACTACATTGAAAGATCCTTACC 58.350 40.000 0.00 0.00 0.00 2.85
441 446 6.214615 TGGACTACATTGAAAGATCCTTACCA 59.785 38.462 0.00 0.00 0.00 3.25
442 447 6.763610 GGACTACATTGAAAGATCCTTACCAG 59.236 42.308 0.00 0.00 0.00 4.00
443 448 7.259088 ACTACATTGAAAGATCCTTACCAGT 57.741 36.000 0.00 0.00 0.00 4.00
447 452 7.234355 ACATTGAAAGATCCTTACCAGTTTCT 58.766 34.615 0.00 0.00 0.00 2.52
448 453 8.383175 ACATTGAAAGATCCTTACCAGTTTCTA 58.617 33.333 0.00 0.00 0.00 2.10
449 454 9.231297 CATTGAAAGATCCTTACCAGTTTCTAA 57.769 33.333 0.00 0.00 0.00 2.10
450 455 8.617290 TTGAAAGATCCTTACCAGTTTCTAAC 57.383 34.615 0.00 0.00 0.00 2.34
451 456 6.872020 TGAAAGATCCTTACCAGTTTCTAACG 59.128 38.462 0.00 0.00 36.23 3.18
452 457 6.600882 AAGATCCTTACCAGTTTCTAACGA 57.399 37.500 0.00 0.00 36.23 3.85
453 458 6.210287 AGATCCTTACCAGTTTCTAACGAG 57.790 41.667 0.00 0.00 36.23 4.18
454 459 4.184079 TCCTTACCAGTTTCTAACGAGC 57.816 45.455 0.00 0.00 36.23 5.03
455 460 3.056322 TCCTTACCAGTTTCTAACGAGCC 60.056 47.826 0.00 0.00 36.23 4.70
456 461 3.306502 CCTTACCAGTTTCTAACGAGCCA 60.307 47.826 0.00 0.00 36.23 4.75
457 462 2.165319 ACCAGTTTCTAACGAGCCAC 57.835 50.000 0.00 0.00 36.23 5.01
458 463 1.692519 ACCAGTTTCTAACGAGCCACT 59.307 47.619 0.00 0.00 36.23 4.00
459 464 2.069273 CCAGTTTCTAACGAGCCACTG 58.931 52.381 0.00 0.00 34.50 3.66
460 465 2.548067 CCAGTTTCTAACGAGCCACTGT 60.548 50.000 0.00 0.00 33.59 3.55
461 466 3.131396 CAGTTTCTAACGAGCCACTGTT 58.869 45.455 0.00 0.00 36.23 3.16
462 467 4.304110 CAGTTTCTAACGAGCCACTGTTA 58.696 43.478 0.00 0.00 36.23 2.41
463 468 4.150098 CAGTTTCTAACGAGCCACTGTTAC 59.850 45.833 0.00 0.00 36.23 2.50
464 469 2.624316 TCTAACGAGCCACTGTTACG 57.376 50.000 0.00 0.00 0.00 3.18
465 470 0.989890 CTAACGAGCCACTGTTACGC 59.010 55.000 0.00 0.00 0.00 4.42
467 472 3.179265 CGAGCCACTGTTACGCGG 61.179 66.667 12.47 0.00 0.00 6.46
468 473 2.813908 GAGCCACTGTTACGCGGG 60.814 66.667 12.47 0.00 0.00 6.13
469 474 4.388499 AGCCACTGTTACGCGGGG 62.388 66.667 12.47 0.85 0.00 5.73
470 475 4.692475 GCCACTGTTACGCGGGGT 62.692 66.667 12.47 2.46 0.00 4.95
472 477 2.433664 CACTGTTACGCGGGGTCC 60.434 66.667 12.47 0.00 0.00 4.46
473 478 3.698820 ACTGTTACGCGGGGTCCC 61.699 66.667 12.47 0.00 0.00 4.46
474 479 4.462280 CTGTTACGCGGGGTCCCC 62.462 72.222 18.34 18.34 41.09 4.81
476 481 4.765449 GTTACGCGGGGTCCCCAC 62.765 72.222 27.45 16.86 45.83 4.61
491 496 3.507713 CACCCCACCCCCACAGTT 61.508 66.667 0.00 0.00 0.00 3.16
492 497 2.157452 CACCCCACCCCCACAGTTA 61.157 63.158 0.00 0.00 0.00 2.24
493 498 1.387636 ACCCCACCCCCACAGTTAA 60.388 57.895 0.00 0.00 0.00 2.01
495 500 0.411848 CCCCACCCCCACAGTTAAAT 59.588 55.000 0.00 0.00 0.00 1.40
496 501 1.618616 CCCCACCCCCACAGTTAAATC 60.619 57.143 0.00 0.00 0.00 2.17
497 502 1.076350 CCCACCCCCACAGTTAAATCA 59.924 52.381 0.00 0.00 0.00 2.57
498 503 2.446435 CCACCCCCACAGTTAAATCAG 58.554 52.381 0.00 0.00 0.00 2.90
500 505 1.357761 ACCCCCACAGTTAAATCAGGG 59.642 52.381 2.85 2.85 39.33 4.45
501 506 1.638589 CCCCCACAGTTAAATCAGGGA 59.361 52.381 10.06 0.00 38.60 4.20
502 507 2.357154 CCCCCACAGTTAAATCAGGGAG 60.357 54.545 10.06 0.00 38.60 4.30
503 508 2.357154 CCCCACAGTTAAATCAGGGAGG 60.357 54.545 10.06 0.00 38.60 4.30
505 510 3.370953 CCCACAGTTAAATCAGGGAGGAG 60.371 52.174 3.64 0.00 38.60 3.69
506 511 3.370953 CCACAGTTAAATCAGGGAGGAGG 60.371 52.174 0.00 0.00 0.00 4.30
507 512 2.239907 ACAGTTAAATCAGGGAGGAGGC 59.760 50.000 0.00 0.00 0.00 4.70
508 513 1.486726 AGTTAAATCAGGGAGGAGGCG 59.513 52.381 0.00 0.00 0.00 5.52
509 514 1.485066 GTTAAATCAGGGAGGAGGCGA 59.515 52.381 0.00 0.00 0.00 5.54
510 515 2.103153 TAAATCAGGGAGGAGGCGAT 57.897 50.000 0.00 0.00 0.00 4.58
511 516 1.216990 AAATCAGGGAGGAGGCGATT 58.783 50.000 0.00 0.00 0.00 3.34
512 517 2.103153 AATCAGGGAGGAGGCGATTA 57.897 50.000 0.00 0.00 0.00 1.75
513 518 2.103153 ATCAGGGAGGAGGCGATTAA 57.897 50.000 0.00 0.00 0.00 1.40
516 521 3.583228 TCAGGGAGGAGGCGATTAATTA 58.417 45.455 0.00 0.00 0.00 1.40
517 522 3.578716 TCAGGGAGGAGGCGATTAATTAG 59.421 47.826 0.00 0.00 0.00 1.73
518 523 2.907042 AGGGAGGAGGCGATTAATTAGG 59.093 50.000 0.00 0.00 0.00 2.69
519 524 2.027100 GGGAGGAGGCGATTAATTAGGG 60.027 54.545 0.00 0.00 0.00 3.53
520 525 2.027100 GGAGGAGGCGATTAATTAGGGG 60.027 54.545 0.00 0.00 0.00 4.79
521 526 2.904434 GAGGAGGCGATTAATTAGGGGA 59.096 50.000 0.00 0.00 0.00 4.81
522 527 3.323775 AGGAGGCGATTAATTAGGGGAA 58.676 45.455 0.00 0.00 0.00 3.97
524 529 4.072839 GGAGGCGATTAATTAGGGGAAAG 58.927 47.826 0.00 0.00 0.00 2.62
525 530 4.202430 GGAGGCGATTAATTAGGGGAAAGA 60.202 45.833 0.00 0.00 0.00 2.52
526 531 4.974399 AGGCGATTAATTAGGGGAAAGAG 58.026 43.478 0.00 0.00 0.00 2.85
529 534 6.004574 GGCGATTAATTAGGGGAAAGAGATT 58.995 40.000 0.00 0.00 0.00 2.40
530 535 7.017254 AGGCGATTAATTAGGGGAAAGAGATTA 59.983 37.037 0.00 0.00 0.00 1.75
531 536 7.664318 GGCGATTAATTAGGGGAAAGAGATTAA 59.336 37.037 0.00 0.00 0.00 1.40
532 537 9.232473 GCGATTAATTAGGGGAAAGAGATTAAT 57.768 33.333 0.00 0.00 34.29 1.40
538 543 8.830084 ATTAGGGGAAAGAGATTAATTAGGGA 57.170 34.615 0.00 0.00 0.00 4.20
539 544 8.647373 TTAGGGGAAAGAGATTAATTAGGGAA 57.353 34.615 0.00 0.00 0.00 3.97
540 545 7.539798 AGGGGAAAGAGATTAATTAGGGAAA 57.460 36.000 0.00 0.00 0.00 3.13
541 546 8.131052 AGGGGAAAGAGATTAATTAGGGAAAT 57.869 34.615 0.00 0.00 0.00 2.17
543 548 9.877222 GGGGAAAGAGATTAATTAGGGAAATTA 57.123 33.333 0.00 0.00 38.71 1.40
558 563 7.595819 AGGGAAATTAAAACATGACAACTCA 57.404 32.000 0.00 0.00 0.00 3.41
560 565 6.366061 GGGAAATTAAAACATGACAACTCAGC 59.634 38.462 0.00 0.00 0.00 4.26
563 568 3.996150 AAAACATGACAACTCAGCAGG 57.004 42.857 0.00 0.00 0.00 4.85
564 569 2.645838 AACATGACAACTCAGCAGGT 57.354 45.000 0.00 0.00 0.00 4.00
566 571 1.271054 ACATGACAACTCAGCAGGTCC 60.271 52.381 0.00 0.00 0.00 4.46
567 572 0.036952 ATGACAACTCAGCAGGTCCG 60.037 55.000 0.00 0.00 0.00 4.79
569 574 0.946221 GACAACTCAGCAGGTCCGTG 60.946 60.000 0.00 0.00 0.00 4.94
570 575 1.367471 CAACTCAGCAGGTCCGTGA 59.633 57.895 0.00 0.00 0.00 4.35
572 577 0.036952 AACTCAGCAGGTCCGTGATG 60.037 55.000 0.00 0.00 35.06 3.07
574 579 2.821366 CAGCAGGTCCGTGATGCC 60.821 66.667 0.00 0.00 40.89 4.40
575 580 4.101448 AGCAGGTCCGTGATGCCC 62.101 66.667 0.00 0.00 40.89 5.36
577 582 4.082523 CAGGTCCGTGATGCCCGT 62.083 66.667 0.00 0.00 0.00 5.28
579 584 4.077184 GGTCCGTGATGCCCGTGA 62.077 66.667 0.00 0.00 0.00 4.35
580 585 2.509336 GTCCGTGATGCCCGTGAG 60.509 66.667 0.00 0.00 0.00 3.51
581 586 4.451150 TCCGTGATGCCCGTGAGC 62.451 66.667 0.00 0.00 0.00 4.26
583 588 4.758251 CGTGATGCCCGTGAGCCA 62.758 66.667 0.00 0.00 0.00 4.75
585 590 4.100084 TGATGCCCGTGAGCCAGG 62.100 66.667 0.00 0.00 0.00 4.45
586 591 3.785859 GATGCCCGTGAGCCAGGA 61.786 66.667 0.00 0.00 0.00 3.86
587 592 3.746949 GATGCCCGTGAGCCAGGAG 62.747 68.421 0.00 0.00 0.00 3.69
589 594 4.459089 GCCCGTGAGCCAGGAGTC 62.459 72.222 0.00 0.00 0.00 3.36
590 595 3.775654 CCCGTGAGCCAGGAGTCC 61.776 72.222 0.00 0.00 0.00 3.85
591 596 4.135153 CCGTGAGCCAGGAGTCCG 62.135 72.222 2.76 0.00 0.00 4.79
592 597 3.374402 CGTGAGCCAGGAGTCCGT 61.374 66.667 2.76 0.00 0.00 4.69
594 599 3.695606 TGAGCCAGGAGTCCGTGC 61.696 66.667 15.76 15.76 0.00 5.34
595 600 3.386237 GAGCCAGGAGTCCGTGCT 61.386 66.667 23.43 23.43 37.80 4.40
596 601 2.925170 AGCCAGGAGTCCGTGCTT 60.925 61.111 19.26 7.19 32.90 3.91
598 603 2.743718 CCAGGAGTCCGTGCTTGT 59.256 61.111 2.76 0.00 0.00 3.16
601 606 0.737715 CAGGAGTCCGTGCTTGTAGC 60.738 60.000 2.76 0.00 42.82 3.58
720 776 3.316071 AGCGGCATATCTCATCTCAAG 57.684 47.619 1.45 0.00 0.00 3.02
736 792 4.678256 TCTCAAGTGGACTCATCCTAACT 58.322 43.478 0.00 0.00 46.43 2.24
786 842 0.037046 GGCAATGTTCCTTGGGCAAG 60.037 55.000 0.00 0.00 38.14 4.01
797 853 5.199982 TCCTTGGGCAAGTTAATTCCATA 57.800 39.130 0.00 0.00 36.72 2.74
805 861 6.064717 GGCAAGTTAATTCCATATCAGGAGT 58.935 40.000 0.00 0.00 39.25 3.85
832 888 3.505680 ACAACTGACAGCACACAGAAAAA 59.494 39.130 1.25 0.00 37.54 1.94
913 969 2.417933 CACCAAGCAAGCTAGCAACTAG 59.582 50.000 18.83 8.45 37.16 2.57
914 970 2.039084 ACCAAGCAAGCTAGCAACTAGT 59.961 45.455 18.83 9.03 36.53 2.57
915 971 3.260884 ACCAAGCAAGCTAGCAACTAGTA 59.739 43.478 18.83 0.00 36.53 1.82
1016 1072 2.357836 CATGGGTGGGAAGCTGCT 59.642 61.111 0.00 0.00 0.00 4.24
1200 1256 2.997897 AGCGCCGAGGAGGAGTTT 60.998 61.111 2.29 0.00 45.00 2.66
1334 1390 0.937304 GTGCTCGTTTCTTCACTGCA 59.063 50.000 0.00 0.00 0.00 4.41
1430 1486 2.342910 CAAGTTTGCATGAGCCACTC 57.657 50.000 0.00 0.00 41.13 3.51
1461 1517 4.744795 CAGGCATTCTGAAGTACTACCT 57.255 45.455 0.00 0.00 46.18 3.08
1462 1518 4.688021 CAGGCATTCTGAAGTACTACCTC 58.312 47.826 0.00 0.00 46.18 3.85
1463 1519 3.707102 AGGCATTCTGAAGTACTACCTCC 59.293 47.826 0.00 0.00 0.00 4.30
1464 1520 3.491104 GGCATTCTGAAGTACTACCTCCG 60.491 52.174 0.00 0.00 0.00 4.63
1465 1521 3.130693 GCATTCTGAAGTACTACCTCCGT 59.869 47.826 0.00 0.00 0.00 4.69
1466 1522 4.381718 GCATTCTGAAGTACTACCTCCGTT 60.382 45.833 0.00 0.00 0.00 4.44
1467 1523 5.341617 CATTCTGAAGTACTACCTCCGTTC 58.658 45.833 0.00 0.00 0.00 3.95
1468 1524 3.350833 TCTGAAGTACTACCTCCGTTCC 58.649 50.000 0.00 0.00 0.00 3.62
1469 1525 2.086869 TGAAGTACTACCTCCGTTCCG 58.913 52.381 0.00 0.00 0.00 4.30
1470 1526 2.290260 TGAAGTACTACCTCCGTTCCGA 60.290 50.000 0.00 0.00 0.00 4.55
1471 1527 2.496899 AGTACTACCTCCGTTCCGAA 57.503 50.000 0.00 0.00 0.00 4.30
1472 1528 3.010200 AGTACTACCTCCGTTCCGAAT 57.990 47.619 0.00 0.00 0.00 3.34
1473 1529 3.359950 AGTACTACCTCCGTTCCGAATT 58.640 45.455 0.00 0.00 0.00 2.17
1474 1530 4.526970 AGTACTACCTCCGTTCCGAATTA 58.473 43.478 0.00 0.00 0.00 1.40
1475 1531 3.790152 ACTACCTCCGTTCCGAATTAC 57.210 47.619 0.00 0.00 0.00 1.89
1476 1532 3.359950 ACTACCTCCGTTCCGAATTACT 58.640 45.455 0.00 0.00 0.00 2.24
1477 1533 3.766051 ACTACCTCCGTTCCGAATTACTT 59.234 43.478 0.00 0.00 0.00 2.24
1478 1534 2.968675 ACCTCCGTTCCGAATTACTTG 58.031 47.619 0.00 0.00 0.00 3.16
1479 1535 2.301009 ACCTCCGTTCCGAATTACTTGT 59.699 45.455 0.00 0.00 0.00 3.16
1480 1536 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1481 1537 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
1482 1538 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
1483 1539 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
1484 1540 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
1485 1541 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
1486 1542 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
1487 1543 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
1488 1544 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
1489 1545 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
1490 1546 3.544682 CGAATTACTTGTCGCACGTATGA 59.455 43.478 0.00 0.00 0.00 2.15
1491 1547 4.030865 CGAATTACTTGTCGCACGTATGAA 59.969 41.667 0.00 0.00 0.00 2.57
1492 1548 5.276207 CGAATTACTTGTCGCACGTATGAAT 60.276 40.000 0.00 0.00 0.00 2.57
1493 1549 4.833469 TTACTTGTCGCACGTATGAATG 57.167 40.909 0.00 0.00 0.00 2.67
1494 1550 2.683968 ACTTGTCGCACGTATGAATGT 58.316 42.857 0.00 0.00 0.00 2.71
1495 1551 3.840468 ACTTGTCGCACGTATGAATGTA 58.160 40.909 0.00 0.00 0.00 2.29
1496 1552 4.430007 ACTTGTCGCACGTATGAATGTAT 58.570 39.130 0.00 0.00 0.00 2.29
1497 1553 4.503007 ACTTGTCGCACGTATGAATGTATC 59.497 41.667 0.00 0.00 0.00 2.24
1498 1554 4.301637 TGTCGCACGTATGAATGTATCT 57.698 40.909 0.00 0.00 0.00 1.98
1499 1555 5.427036 TGTCGCACGTATGAATGTATCTA 57.573 39.130 0.00 0.00 0.00 1.98
1500 1556 5.449304 TGTCGCACGTATGAATGTATCTAG 58.551 41.667 0.00 0.00 0.00 2.43
1501 1557 5.237779 TGTCGCACGTATGAATGTATCTAGA 59.762 40.000 0.00 0.00 0.00 2.43
1502 1558 6.072673 TGTCGCACGTATGAATGTATCTAGAT 60.073 38.462 10.73 10.73 0.00 1.98
1503 1559 6.249471 GTCGCACGTATGAATGTATCTAGATG 59.751 42.308 15.79 0.00 0.00 2.90
1504 1560 6.072673 TCGCACGTATGAATGTATCTAGATGT 60.073 38.462 15.79 0.00 0.00 3.06
1505 1561 7.118680 TCGCACGTATGAATGTATCTAGATGTA 59.881 37.037 15.79 4.44 0.00 2.29
1506 1562 7.910683 CGCACGTATGAATGTATCTAGATGTAT 59.089 37.037 15.79 6.61 0.00 2.29
1507 1563 9.574458 GCACGTATGAATGTATCTAGATGTATT 57.426 33.333 15.79 14.21 0.00 1.89
1534 1590 9.529325 TTAGTTCTAGATACATCCATTTCAACG 57.471 33.333 0.00 0.00 0.00 4.10
1535 1591 6.986817 AGTTCTAGATACATCCATTTCAACGG 59.013 38.462 0.00 0.00 0.00 4.44
1536 1592 5.297547 TCTAGATACATCCATTTCAACGGC 58.702 41.667 0.00 0.00 0.00 5.68
1537 1593 2.872245 AGATACATCCATTTCAACGGCG 59.128 45.455 4.80 4.80 0.00 6.46
1538 1594 2.388310 TACATCCATTTCAACGGCGA 57.612 45.000 16.62 0.00 0.00 5.54
1539 1595 1.086696 ACATCCATTTCAACGGCGAG 58.913 50.000 16.62 5.73 0.00 5.03
1540 1596 1.086696 CATCCATTTCAACGGCGAGT 58.913 50.000 16.62 0.00 0.00 4.18
1541 1597 2.276201 CATCCATTTCAACGGCGAGTA 58.724 47.619 16.62 0.00 0.00 2.59
1542 1598 2.459060 TCCATTTCAACGGCGAGTAA 57.541 45.000 16.62 6.25 0.00 2.24
1543 1599 2.980568 TCCATTTCAACGGCGAGTAAT 58.019 42.857 16.62 8.46 0.00 1.89
1544 1600 3.340034 TCCATTTCAACGGCGAGTAATT 58.660 40.909 16.62 0.00 0.00 1.40
1545 1601 3.754323 TCCATTTCAACGGCGAGTAATTT 59.246 39.130 16.62 0.00 0.00 1.82
1546 1602 3.851403 CCATTTCAACGGCGAGTAATTTG 59.149 43.478 16.62 6.61 0.00 2.32
1547 1603 3.546002 TTTCAACGGCGAGTAATTTGG 57.454 42.857 16.62 0.00 0.00 3.28
1548 1604 2.459060 TCAACGGCGAGTAATTTGGA 57.541 45.000 16.62 0.00 0.00 3.53
1549 1605 2.768698 TCAACGGCGAGTAATTTGGAA 58.231 42.857 16.62 0.00 0.00 3.53
1550 1606 2.481185 TCAACGGCGAGTAATTTGGAAC 59.519 45.455 16.62 0.00 0.00 3.62
1551 1607 1.073177 ACGGCGAGTAATTTGGAACG 58.927 50.000 16.62 0.00 0.00 3.95
1552 1608 0.372334 CGGCGAGTAATTTGGAACGG 59.628 55.000 0.00 0.00 0.00 4.44
1553 1609 1.729284 GGCGAGTAATTTGGAACGGA 58.271 50.000 0.00 0.00 0.00 4.69
1554 1610 1.664151 GGCGAGTAATTTGGAACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
1555 1611 1.664151 GCGAGTAATTTGGAACGGAGG 59.336 52.381 0.00 0.00 0.00 4.30
1556 1612 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1557 1613 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1558 1614 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1559 1615 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1601 1657 0.515564 GTGACGGTCCATGTTTTCGG 59.484 55.000 5.55 0.00 0.00 4.30
1643 1699 3.493503 CGGTGCGAATCTATAAAGGAACC 59.506 47.826 0.00 0.00 0.00 3.62
1660 1716 5.282946 AGGAACCCATGGATTTCAAATGAT 58.717 37.500 15.22 0.00 0.00 2.45
1674 1730 9.364989 GATTTCAAATGATATTCGGGTTGAAAA 57.635 29.630 11.92 0.00 43.92 2.29
1675 1731 9.717942 ATTTCAAATGATATTCGGGTTGAAAAA 57.282 25.926 11.92 0.00 43.92 1.94
1699 1756 2.649531 TCGTGGGGAACAAGTGAAAT 57.350 45.000 0.00 0.00 0.00 2.17
1705 1762 4.825085 GTGGGGAACAAGTGAAATTCTGTA 59.175 41.667 0.00 0.00 0.00 2.74
1749 1806 7.124298 AGAGAACTGTAATTCTGTATGGCAGTA 59.876 37.037 0.00 0.00 45.23 2.74
1755 1812 7.564793 TGTAATTCTGTATGGCAGTATGAACT 58.435 34.615 0.00 0.00 45.23 3.01
1757 1814 9.712305 GTAATTCTGTATGGCAGTATGAACTAT 57.288 33.333 0.00 0.00 45.23 2.12
1762 1819 9.764363 TCTGTATGGCAGTATGAACTATAAAAG 57.236 33.333 0.00 0.00 45.23 2.27
1786 1843 4.290985 TGGAAATCACTATCCCAAACTGGA 59.709 41.667 0.00 0.00 40.96 3.86
1806 1863 7.334844 CTGGAAGTTAAAATGTATTCCCTCC 57.665 40.000 0.00 0.00 38.93 4.30
1807 1864 5.883673 TGGAAGTTAAAATGTATTCCCTCCG 59.116 40.000 0.00 0.00 38.93 4.63
1808 1865 5.884232 GGAAGTTAAAATGTATTCCCTCCGT 59.116 40.000 0.00 0.00 34.58 4.69
1809 1866 6.376299 GGAAGTTAAAATGTATTCCCTCCGTT 59.624 38.462 0.00 0.00 34.58 4.44
1810 1867 6.997239 AGTTAAAATGTATTCCCTCCGTTC 57.003 37.500 0.00 0.00 0.00 3.95
1811 1868 5.884232 AGTTAAAATGTATTCCCTCCGTTCC 59.116 40.000 0.00 0.00 0.00 3.62
1812 1869 4.586306 AAAATGTATTCCCTCCGTTCCT 57.414 40.909 0.00 0.00 0.00 3.36
1813 1870 5.703730 AAAATGTATTCCCTCCGTTCCTA 57.296 39.130 0.00 0.00 0.00 2.94
1814 1871 5.703730 AAATGTATTCCCTCCGTTCCTAA 57.296 39.130 0.00 0.00 0.00 2.69
1815 1872 5.703730 AATGTATTCCCTCCGTTCCTAAA 57.296 39.130 0.00 0.00 0.00 1.85
1816 1873 5.906772 ATGTATTCCCTCCGTTCCTAAAT 57.093 39.130 0.00 0.00 0.00 1.40
1817 1874 7.383156 AATGTATTCCCTCCGTTCCTAAATA 57.617 36.000 0.00 0.00 0.00 1.40
1818 1875 7.569599 ATGTATTCCCTCCGTTCCTAAATAT 57.430 36.000 0.00 0.00 0.00 1.28
1819 1876 8.674925 ATGTATTCCCTCCGTTCCTAAATATA 57.325 34.615 0.00 0.00 0.00 0.86
1820 1877 8.495160 TGTATTCCCTCCGTTCCTAAATATAA 57.505 34.615 0.00 0.00 0.00 0.98
1821 1878 8.591072 TGTATTCCCTCCGTTCCTAAATATAAG 58.409 37.037 0.00 0.00 0.00 1.73
1822 1879 5.479124 TCCCTCCGTTCCTAAATATAAGC 57.521 43.478 0.00 0.00 0.00 3.09
1823 1880 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
1824 1881 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
1825 1882 5.482878 CCCTCCGTTCCTAAATATAAGCCTA 59.517 44.000 0.00 0.00 0.00 3.93
1826 1883 6.156429 CCCTCCGTTCCTAAATATAAGCCTAT 59.844 42.308 0.00 0.00 0.00 2.57
1827 1884 7.311109 CCCTCCGTTCCTAAATATAAGCCTATT 60.311 40.741 0.00 0.00 0.00 1.73
1828 1885 8.101419 CCTCCGTTCCTAAATATAAGCCTATTT 58.899 37.037 3.07 3.07 35.85 1.40
1830 1887 9.933723 TCCGTTCCTAAATATAAGCCTATTTAC 57.066 33.333 0.00 0.00 34.15 2.01
1831 1888 9.715121 CCGTTCCTAAATATAAGCCTATTTACA 57.285 33.333 0.00 0.00 34.15 2.41
1866 1923 8.902540 ATGGACTATATACGAAGCAAAATGAA 57.097 30.769 0.00 0.00 0.00 2.57
1867 1924 8.725405 TGGACTATATACGAAGCAAAATGAAA 57.275 30.769 0.00 0.00 0.00 2.69
1868 1925 8.826710 TGGACTATATACGAAGCAAAATGAAAG 58.173 33.333 0.00 0.00 0.00 2.62
1869 1926 9.042008 GGACTATATACGAAGCAAAATGAAAGA 57.958 33.333 0.00 0.00 0.00 2.52
1878 1935 9.167311 ACGAAGCAAAATGAAAGAATCTATACT 57.833 29.630 0.00 0.00 0.00 2.12
1879 1936 9.643652 CGAAGCAAAATGAAAGAATCTATACTC 57.356 33.333 0.00 0.00 0.00 2.59
1912 1969 8.535335 ACATCTATATTCATCTGTATGTGGTCC 58.465 37.037 0.00 0.00 34.50 4.46
1913 1970 8.756927 CATCTATATTCATCTGTATGTGGTCCT 58.243 37.037 0.00 0.00 34.50 3.85
1914 1971 8.727100 TCTATATTCATCTGTATGTGGTCCTT 57.273 34.615 0.00 0.00 34.50 3.36
1915 1972 9.822727 TCTATATTCATCTGTATGTGGTCCTTA 57.177 33.333 0.00 0.00 34.50 2.69
1918 1975 9.950496 ATATTCATCTGTATGTGGTCCTTATTC 57.050 33.333 0.00 0.00 34.50 1.75
1919 1976 6.806668 TCATCTGTATGTGGTCCTTATTCA 57.193 37.500 0.00 0.00 34.50 2.57
1920 1977 7.194112 TCATCTGTATGTGGTCCTTATTCAA 57.806 36.000 0.00 0.00 34.50 2.69
1921 1978 7.629157 TCATCTGTATGTGGTCCTTATTCAAA 58.371 34.615 0.00 0.00 34.50 2.69
1922 1979 8.274322 TCATCTGTATGTGGTCCTTATTCAAAT 58.726 33.333 0.00 0.00 34.50 2.32
1923 1980 9.559732 CATCTGTATGTGGTCCTTATTCAAATA 57.440 33.333 0.00 0.00 0.00 1.40
1925 1982 9.778741 TCTGTATGTGGTCCTTATTCAAATATC 57.221 33.333 0.00 0.00 0.00 1.63
1926 1983 9.784531 CTGTATGTGGTCCTTATTCAAATATCT 57.215 33.333 0.00 0.00 0.00 1.98
2000 2058 7.806014 AGCTTTCAGCATTTGCAAAATAAATTG 59.194 29.630 17.19 9.81 45.56 2.32
2001 2059 7.592164 GCTTTCAGCATTTGCAAAATAAATTGT 59.408 29.630 17.19 0.00 45.16 2.71
2002 2060 9.453325 CTTTCAGCATTTGCAAAATAAATTGTT 57.547 25.926 17.19 3.82 45.16 2.83
2003 2061 9.448294 TTTCAGCATTTGCAAAATAAATTGTTC 57.552 25.926 17.19 0.00 45.16 3.18
2004 2062 8.151141 TCAGCATTTGCAAAATAAATTGTTCA 57.849 26.923 17.19 0.00 45.16 3.18
2005 2063 8.068977 TCAGCATTTGCAAAATAAATTGTTCAC 58.931 29.630 17.19 0.00 45.16 3.18
2014 2166 8.379902 GCAAAATAAATTGTTCACTTTATCGGG 58.620 33.333 8.02 3.94 32.80 5.14
2023 2175 3.035363 TCACTTTATCGGGCCAGATGTA 58.965 45.455 26.48 12.67 32.39 2.29
2035 2187 3.134081 GGCCAGATGTAAGCCTGTAACTA 59.866 47.826 0.00 0.00 43.62 2.24
2044 2196 1.366366 CCTGTAACTATCGGCCCGG 59.634 63.158 1.90 0.00 0.00 5.73
2095 2247 0.988832 AACCTGCGGATTCAACCCTA 59.011 50.000 0.00 0.00 0.00 3.53
2100 2252 0.533085 GCGGATTCAACCCTAGGAGC 60.533 60.000 11.48 0.00 0.00 4.70
2101 2253 1.123928 CGGATTCAACCCTAGGAGCT 58.876 55.000 11.48 0.00 0.00 4.09
2102 2254 1.202580 CGGATTCAACCCTAGGAGCTG 60.203 57.143 11.48 4.32 0.00 4.24
2117 2285 2.444351 GAGCTGTATGTCGCATTTTGC 58.556 47.619 0.00 0.00 40.69 3.68
2131 2299 3.181531 GCATTTTGCGACAAATAGTTGGC 60.182 43.478 7.93 2.78 39.65 4.52
2148 2316 2.395690 CGATTCGCACAGGAACGC 59.604 61.111 0.00 0.00 0.00 4.84
2149 2317 2.785258 GATTCGCACAGGAACGCC 59.215 61.111 0.00 0.00 0.00 5.68
2150 2318 2.746277 ATTCGCACAGGAACGCCC 60.746 61.111 0.00 0.00 33.31 6.13
2154 2322 4.966787 GCACAGGAACGCCCCCAA 62.967 66.667 0.00 0.00 34.66 4.12
2155 2323 2.203422 CACAGGAACGCCCCCAAA 60.203 61.111 0.00 0.00 34.66 3.28
2156 2324 2.115266 ACAGGAACGCCCCCAAAG 59.885 61.111 0.00 0.00 34.66 2.77
2157 2325 2.115266 CAGGAACGCCCCCAAAGT 59.885 61.111 0.00 0.00 34.66 2.66
2158 2326 2.115266 AGGAACGCCCCCAAAGTG 59.885 61.111 0.00 0.00 34.66 3.16
2159 2327 3.680786 GGAACGCCCCCAAAGTGC 61.681 66.667 0.00 0.00 0.00 4.40
2160 2328 2.909965 GAACGCCCCCAAAGTGCA 60.910 61.111 0.00 0.00 0.00 4.57
2161 2329 3.207547 GAACGCCCCCAAAGTGCAC 62.208 63.158 9.40 9.40 0.00 4.57
2164 2332 3.305516 GCCCCCAAAGTGCACCAG 61.306 66.667 14.63 3.30 0.00 4.00
2165 2333 3.305516 CCCCCAAAGTGCACCAGC 61.306 66.667 14.63 0.00 42.57 4.85
2176 2344 2.661537 CACCAGCACGACAGCGAA 60.662 61.111 0.00 0.00 41.64 4.70
2177 2345 2.661866 ACCAGCACGACAGCGAAC 60.662 61.111 0.00 0.00 41.64 3.95
2178 2346 2.661537 CCAGCACGACAGCGAACA 60.662 61.111 0.00 0.00 41.64 3.18
2179 2347 2.546321 CAGCACGACAGCGAACAC 59.454 61.111 0.00 0.00 41.64 3.32
2180 2348 2.661866 AGCACGACAGCGAACACC 60.662 61.111 0.00 0.00 41.64 4.16
2181 2349 2.964925 GCACGACAGCGAACACCA 60.965 61.111 0.00 0.00 41.64 4.17
2182 2350 2.943345 GCACGACAGCGAACACCAG 61.943 63.158 0.00 0.00 41.64 4.00
2194 2362 4.037923 AGCGAACACCAGAACAATTGAAAT 59.962 37.500 13.59 0.00 0.00 2.17
2196 2364 5.918011 GCGAACACCAGAACAATTGAAATTA 59.082 36.000 13.59 0.00 0.00 1.40
2202 2370 8.043710 ACACCAGAACAATTGAAATTACCAAAA 58.956 29.630 13.59 0.00 0.00 2.44
2203 2371 8.887717 CACCAGAACAATTGAAATTACCAAAAA 58.112 29.630 13.59 0.00 0.00 1.94
2219 2410 2.414750 AAAAATATGCGCCCTCCCG 58.585 52.632 4.18 0.00 0.00 5.14
2235 2426 2.170036 CGTTGTTAGGTGCGCGTG 59.830 61.111 8.43 0.00 0.00 5.34
2277 2468 5.897050 TGAACTTTGGTGACCAATAAACAC 58.103 37.500 19.03 8.53 43.55 3.32
2283 2474 1.538075 GTGACCAATAAACACCACGGG 59.462 52.381 0.00 0.00 0.00 5.28
2307 2498 3.362706 TGTAAGAACTACCAGGAGCGAT 58.637 45.455 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.040781 GCTTACGCACCGCTCAAAAA 60.041 50.000 0.00 0.00 35.78 1.94
12 13 0.882927 AGCTTACGCACCGCTCAAAA 60.883 50.000 0.00 0.00 39.10 2.44
13 14 1.301401 AGCTTACGCACCGCTCAAA 60.301 52.632 0.00 0.00 39.10 2.69
14 15 2.342279 AGCTTACGCACCGCTCAA 59.658 55.556 0.00 0.00 39.10 3.02
17 18 2.125912 CAGAGCTTACGCACCGCT 60.126 61.111 0.00 0.00 39.10 5.52
18 19 2.884087 TAGCAGAGCTTACGCACCGC 62.884 60.000 0.00 0.00 40.44 5.68
22 23 0.460284 GGCTTAGCAGAGCTTACGCA 60.460 55.000 6.53 0.00 42.32 5.24
52 53 1.611977 CTCAATCATTGGCATCGGCAT 59.388 47.619 0.00 0.00 43.71 4.40
53 54 1.026584 CTCAATCATTGGCATCGGCA 58.973 50.000 0.00 0.00 43.71 5.69
54 55 0.318445 GCTCAATCATTGGCATCGGC 60.318 55.000 0.00 0.00 40.13 5.54
55 56 0.313043 GGCTCAATCATTGGCATCGG 59.687 55.000 11.51 0.00 0.00 4.18
56 57 0.040692 CGGCTCAATCATTGGCATCG 60.041 55.000 11.51 4.83 0.00 3.84
57 58 1.311859 TCGGCTCAATCATTGGCATC 58.688 50.000 11.51 0.00 0.00 3.91
58 59 1.766494 TTCGGCTCAATCATTGGCAT 58.234 45.000 11.51 0.00 0.00 4.40
139 140 1.019278 AGCTCGTGTACAATTGCCCG 61.019 55.000 5.05 2.94 0.00 6.13
198 199 1.390123 CAGCGACAACTGGACAATACG 59.610 52.381 0.00 0.00 33.85 3.06
233 235 2.133742 CTTGCTCCAACTTGCACGGG 62.134 60.000 0.00 0.00 39.05 5.28
253 255 3.138375 CGTCACAGCAGTTCGACG 58.862 61.111 7.54 7.54 44.34 5.12
256 258 2.243957 TTGGCGTCACAGCAGTTCG 61.244 57.895 0.00 0.00 39.27 3.95
277 280 1.321474 TAGAACCGGTGTCTGTCGTT 58.679 50.000 22.04 0.00 0.00 3.85
285 288 4.212636 CGTTTCAAGATTTAGAACCGGTGT 59.787 41.667 8.52 0.11 0.00 4.16
296 299 5.418840 ACATGAATAGCCCGTTTCAAGATTT 59.581 36.000 0.00 0.00 35.63 2.17
353 358 6.172136 TCATTCTTGGGAAATTTGCTGAAA 57.828 33.333 9.70 1.98 34.90 2.69
365 370 7.345691 TGTAATAGCTCATTTCATTCTTGGGA 58.654 34.615 0.00 0.00 0.00 4.37
381 386 9.950496 TTCTTCTTCTTTTCTGATGTAATAGCT 57.050 29.630 0.00 0.00 0.00 3.32
388 393 8.915057 TCATTCTTCTTCTTCTTTTCTGATGT 57.085 30.769 0.00 0.00 0.00 3.06
394 399 9.404348 GTCCATTTCATTCTTCTTCTTCTTTTC 57.596 33.333 0.00 0.00 0.00 2.29
397 402 9.225436 GTAGTCCATTTCATTCTTCTTCTTCTT 57.775 33.333 0.00 0.00 0.00 2.52
398 403 8.378565 TGTAGTCCATTTCATTCTTCTTCTTCT 58.621 33.333 0.00 0.00 0.00 2.85
399 404 8.553459 TGTAGTCCATTTCATTCTTCTTCTTC 57.447 34.615 0.00 0.00 0.00 2.87
400 405 9.525826 AATGTAGTCCATTTCATTCTTCTTCTT 57.474 29.630 0.00 0.00 41.01 2.52
401 406 8.954350 CAATGTAGTCCATTTCATTCTTCTTCT 58.046 33.333 0.00 0.00 41.93 2.85
402 407 8.950210 TCAATGTAGTCCATTTCATTCTTCTTC 58.050 33.333 0.00 0.00 41.93 2.87
403 408 8.868522 TCAATGTAGTCCATTTCATTCTTCTT 57.131 30.769 0.00 0.00 41.93 2.52
404 409 8.868522 TTCAATGTAGTCCATTTCATTCTTCT 57.131 30.769 0.00 0.00 41.93 2.85
405 410 9.565213 CTTTCAATGTAGTCCATTTCATTCTTC 57.435 33.333 0.00 0.00 41.93 2.87
406 411 9.300681 TCTTTCAATGTAGTCCATTTCATTCTT 57.699 29.630 0.00 0.00 41.93 2.52
407 412 8.868522 TCTTTCAATGTAGTCCATTTCATTCT 57.131 30.769 0.00 0.00 41.93 2.40
408 413 9.727627 GATCTTTCAATGTAGTCCATTTCATTC 57.272 33.333 0.00 0.00 41.93 2.67
409 414 8.689972 GGATCTTTCAATGTAGTCCATTTCATT 58.310 33.333 0.00 0.00 41.93 2.57
410 415 8.057623 AGGATCTTTCAATGTAGTCCATTTCAT 58.942 33.333 0.00 0.00 41.93 2.57
411 416 7.405292 AGGATCTTTCAATGTAGTCCATTTCA 58.595 34.615 0.00 0.00 41.93 2.69
412 417 7.872113 AGGATCTTTCAATGTAGTCCATTTC 57.128 36.000 0.00 0.00 41.93 2.17
413 418 9.178758 GTAAGGATCTTTCAATGTAGTCCATTT 57.821 33.333 0.00 0.00 41.93 2.32
414 419 7.775561 GGTAAGGATCTTTCAATGTAGTCCATT 59.224 37.037 0.00 0.00 44.73 3.16
415 420 7.092444 TGGTAAGGATCTTTCAATGTAGTCCAT 60.092 37.037 0.00 0.00 34.36 3.41
416 421 6.214615 TGGTAAGGATCTTTCAATGTAGTCCA 59.785 38.462 0.00 0.00 0.00 4.02
417 422 6.650120 TGGTAAGGATCTTTCAATGTAGTCC 58.350 40.000 0.00 0.00 0.00 3.85
418 423 7.331791 ACTGGTAAGGATCTTTCAATGTAGTC 58.668 38.462 0.00 0.00 0.00 2.59
431 436 4.804665 GCTCGTTAGAAACTGGTAAGGATC 59.195 45.833 0.00 0.00 0.00 3.36
432 437 4.382793 GGCTCGTTAGAAACTGGTAAGGAT 60.383 45.833 0.00 0.00 0.00 3.24
433 438 3.056322 GGCTCGTTAGAAACTGGTAAGGA 60.056 47.826 0.00 0.00 0.00 3.36
434 439 3.259902 GGCTCGTTAGAAACTGGTAAGG 58.740 50.000 0.00 0.00 0.00 2.69
435 440 3.678548 GTGGCTCGTTAGAAACTGGTAAG 59.321 47.826 0.00 0.00 0.00 2.34
436 441 3.322828 AGTGGCTCGTTAGAAACTGGTAA 59.677 43.478 0.00 0.00 0.00 2.85
437 442 2.895404 AGTGGCTCGTTAGAAACTGGTA 59.105 45.455 0.00 0.00 0.00 3.25
438 443 1.692519 AGTGGCTCGTTAGAAACTGGT 59.307 47.619 0.00 0.00 0.00 4.00
439 444 2.069273 CAGTGGCTCGTTAGAAACTGG 58.931 52.381 0.00 0.00 35.57 4.00
440 445 2.755650 ACAGTGGCTCGTTAGAAACTG 58.244 47.619 0.00 0.00 40.69 3.16
441 446 3.470645 AACAGTGGCTCGTTAGAAACT 57.529 42.857 0.00 0.00 0.00 2.66
442 447 3.120782 CGTAACAGTGGCTCGTTAGAAAC 59.879 47.826 0.00 0.00 0.00 2.78
443 448 3.311106 CGTAACAGTGGCTCGTTAGAAA 58.689 45.455 0.00 0.00 0.00 2.52
447 452 0.730155 CGCGTAACAGTGGCTCGTTA 60.730 55.000 0.00 0.00 0.00 3.18
448 453 2.019951 CGCGTAACAGTGGCTCGTT 61.020 57.895 0.00 0.00 0.00 3.85
449 454 2.430244 CGCGTAACAGTGGCTCGT 60.430 61.111 0.00 0.00 0.00 4.18
450 455 3.179265 CCGCGTAACAGTGGCTCG 61.179 66.667 4.92 0.00 34.77 5.03
451 456 2.813908 CCCGCGTAACAGTGGCTC 60.814 66.667 4.92 0.00 40.31 4.70
452 457 4.388499 CCCCGCGTAACAGTGGCT 62.388 66.667 4.92 0.00 40.31 4.75
453 458 4.692475 ACCCCGCGTAACAGTGGC 62.692 66.667 4.92 0.00 40.31 5.01
454 459 2.433664 GACCCCGCGTAACAGTGG 60.434 66.667 4.92 0.00 41.27 4.00
455 460 2.433664 GGACCCCGCGTAACAGTG 60.434 66.667 4.92 0.00 0.00 3.66
456 461 3.698820 GGGACCCCGCGTAACAGT 61.699 66.667 4.92 0.00 0.00 3.55
474 479 1.721093 TTAACTGTGGGGGTGGGGTG 61.721 60.000 0.00 0.00 0.00 4.61
475 480 1.000041 TTTAACTGTGGGGGTGGGGT 61.000 55.000 0.00 0.00 0.00 4.95
476 481 0.411848 ATTTAACTGTGGGGGTGGGG 59.588 55.000 0.00 0.00 0.00 4.96
478 483 2.446435 CTGATTTAACTGTGGGGGTGG 58.554 52.381 0.00 0.00 0.00 4.61
479 484 2.446435 CCTGATTTAACTGTGGGGGTG 58.554 52.381 0.00 0.00 0.00 4.61
480 485 1.357761 CCCTGATTTAACTGTGGGGGT 59.642 52.381 0.00 0.00 0.00 4.95
482 487 2.357154 CCTCCCTGATTTAACTGTGGGG 60.357 54.545 0.00 0.00 35.56 4.96
483 488 2.576191 TCCTCCCTGATTTAACTGTGGG 59.424 50.000 0.00 0.00 36.14 4.61
484 489 3.370953 CCTCCTCCCTGATTTAACTGTGG 60.371 52.174 0.00 0.00 0.00 4.17
485 490 3.878778 CCTCCTCCCTGATTTAACTGTG 58.121 50.000 0.00 0.00 0.00 3.66
486 491 2.239907 GCCTCCTCCCTGATTTAACTGT 59.760 50.000 0.00 0.00 0.00 3.55
487 492 2.743183 CGCCTCCTCCCTGATTTAACTG 60.743 54.545 0.00 0.00 0.00 3.16
488 493 1.486726 CGCCTCCTCCCTGATTTAACT 59.513 52.381 0.00 0.00 0.00 2.24
489 494 1.485066 TCGCCTCCTCCCTGATTTAAC 59.515 52.381 0.00 0.00 0.00 2.01
490 495 1.874129 TCGCCTCCTCCCTGATTTAA 58.126 50.000 0.00 0.00 0.00 1.52
491 496 2.103153 ATCGCCTCCTCCCTGATTTA 57.897 50.000 0.00 0.00 0.00 1.40
492 497 1.216990 AATCGCCTCCTCCCTGATTT 58.783 50.000 0.00 0.00 0.00 2.17
493 498 2.103153 TAATCGCCTCCTCCCTGATT 57.897 50.000 0.00 0.00 34.03 2.57
495 500 2.103153 ATTAATCGCCTCCTCCCTGA 57.897 50.000 0.00 0.00 0.00 3.86
496 501 2.938956 AATTAATCGCCTCCTCCCTG 57.061 50.000 0.00 0.00 0.00 4.45
497 502 2.907042 CCTAATTAATCGCCTCCTCCCT 59.093 50.000 0.00 0.00 0.00 4.20
498 503 2.027100 CCCTAATTAATCGCCTCCTCCC 60.027 54.545 0.00 0.00 0.00 4.30
500 505 2.904434 TCCCCTAATTAATCGCCTCCTC 59.096 50.000 0.00 0.00 0.00 3.71
501 506 2.986050 TCCCCTAATTAATCGCCTCCT 58.014 47.619 0.00 0.00 0.00 3.69
502 507 3.782656 TTCCCCTAATTAATCGCCTCC 57.217 47.619 0.00 0.00 0.00 4.30
503 508 4.969484 TCTTTCCCCTAATTAATCGCCTC 58.031 43.478 0.00 0.00 0.00 4.70
505 510 4.969484 TCTCTTTCCCCTAATTAATCGCC 58.031 43.478 0.00 0.00 0.00 5.54
506 511 8.617290 TTAATCTCTTTCCCCTAATTAATCGC 57.383 34.615 0.00 0.00 0.00 4.58
512 517 9.249850 TCCCTAATTAATCTCTTTCCCCTAATT 57.750 33.333 0.00 0.00 0.00 1.40
513 518 8.830084 TCCCTAATTAATCTCTTTCCCCTAAT 57.170 34.615 0.00 0.00 0.00 1.73
516 521 7.539798 TTTCCCTAATTAATCTCTTTCCCCT 57.460 36.000 0.00 0.00 0.00 4.79
517 522 8.783660 AATTTCCCTAATTAATCTCTTTCCCC 57.216 34.615 0.00 0.00 34.69 4.81
532 537 9.137459 TGAGTTGTCATGTTTTAATTTCCCTAA 57.863 29.630 0.00 0.00 0.00 2.69
533 538 8.698973 TGAGTTGTCATGTTTTAATTTCCCTA 57.301 30.769 0.00 0.00 0.00 3.53
534 539 7.595819 TGAGTTGTCATGTTTTAATTTCCCT 57.404 32.000 0.00 0.00 0.00 4.20
535 540 6.366061 GCTGAGTTGTCATGTTTTAATTTCCC 59.634 38.462 0.00 0.00 30.18 3.97
536 541 6.922957 TGCTGAGTTGTCATGTTTTAATTTCC 59.077 34.615 0.00 0.00 30.18 3.13
537 542 7.115378 CCTGCTGAGTTGTCATGTTTTAATTTC 59.885 37.037 0.00 0.00 30.18 2.17
538 543 6.925165 CCTGCTGAGTTGTCATGTTTTAATTT 59.075 34.615 0.00 0.00 30.18 1.82
539 544 6.040842 ACCTGCTGAGTTGTCATGTTTTAATT 59.959 34.615 0.00 0.00 30.18 1.40
540 545 5.536161 ACCTGCTGAGTTGTCATGTTTTAAT 59.464 36.000 0.00 0.00 30.18 1.40
541 546 4.887071 ACCTGCTGAGTTGTCATGTTTTAA 59.113 37.500 0.00 0.00 30.18 1.52
543 548 3.290710 ACCTGCTGAGTTGTCATGTTTT 58.709 40.909 0.00 0.00 30.18 2.43
544 549 2.880890 GACCTGCTGAGTTGTCATGTTT 59.119 45.455 0.00 0.00 30.18 2.83
546 551 1.271054 GGACCTGCTGAGTTGTCATGT 60.271 52.381 0.00 0.00 30.18 3.21
547 552 1.446907 GGACCTGCTGAGTTGTCATG 58.553 55.000 0.00 0.00 30.18 3.07
548 553 0.036952 CGGACCTGCTGAGTTGTCAT 60.037 55.000 0.00 0.00 30.18 3.06
549 554 1.367471 CGGACCTGCTGAGTTGTCA 59.633 57.895 0.00 0.00 0.00 3.58
550 555 0.946221 CACGGACCTGCTGAGTTGTC 60.946 60.000 0.00 0.00 0.00 3.18
552 557 0.036952 ATCACGGACCTGCTGAGTTG 60.037 55.000 0.00 0.00 0.00 3.16
553 558 0.036952 CATCACGGACCTGCTGAGTT 60.037 55.000 0.00 0.00 0.00 3.01
555 560 1.812922 GCATCACGGACCTGCTGAG 60.813 63.158 0.00 0.00 33.15 3.35
556 561 2.265739 GCATCACGGACCTGCTGA 59.734 61.111 0.00 0.00 33.15 4.26
558 563 4.101448 GGGCATCACGGACCTGCT 62.101 66.667 3.70 0.00 36.18 4.24
560 565 4.082523 ACGGGCATCACGGACCTG 62.083 66.667 0.00 0.00 31.91 4.00
563 568 2.509336 CTCACGGGCATCACGGAC 60.509 66.667 0.00 0.00 35.23 4.79
564 569 4.451150 GCTCACGGGCATCACGGA 62.451 66.667 0.00 0.00 35.23 4.69
566 571 4.758251 TGGCTCACGGGCATCACG 62.758 66.667 0.00 0.00 45.79 4.35
572 577 4.459089 GACTCCTGGCTCACGGGC 62.459 72.222 0.00 0.00 45.92 6.13
574 579 4.135153 CGGACTCCTGGCTCACGG 62.135 72.222 0.00 0.00 0.00 4.94
575 580 3.374402 ACGGACTCCTGGCTCACG 61.374 66.667 0.00 0.00 0.00 4.35
576 581 2.262915 CACGGACTCCTGGCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
577 582 3.695606 GCACGGACTCCTGGCTCA 61.696 66.667 0.00 0.00 0.00 4.26
579 584 2.925170 AAGCACGGACTCCTGGCT 60.925 61.111 4.87 4.87 36.13 4.75
580 585 2.167398 TACAAGCACGGACTCCTGGC 62.167 60.000 0.00 0.00 0.00 4.85
581 586 0.108615 CTACAAGCACGGACTCCTGG 60.109 60.000 0.00 0.00 0.00 4.45
583 588 1.592223 GCTACAAGCACGGACTCCT 59.408 57.895 0.00 0.00 41.89 3.69
591 596 7.594758 TGAGTTTATCAAAAATGCTACAAGCAC 59.405 33.333 3.29 0.00 44.65 4.40
592 597 7.656412 TGAGTTTATCAAAAATGCTACAAGCA 58.344 30.769 3.76 3.76 45.43 3.91
603 608 9.030301 GCTTTTAGCTGTTGAGTTTATCAAAAA 57.970 29.630 0.00 0.00 43.03 1.94
604 609 8.194104 TGCTTTTAGCTGTTGAGTTTATCAAAA 58.806 29.630 0.00 0.00 45.00 2.44
607 612 6.875948 TGCTTTTAGCTGTTGAGTTTATCA 57.124 33.333 0.00 0.00 42.97 2.15
608 613 6.969473 GGATGCTTTTAGCTGTTGAGTTTATC 59.031 38.462 0.00 0.00 42.97 1.75
736 792 1.186917 CCCTGGCATGTTGCTTTCCA 61.187 55.000 0.00 0.00 44.28 3.53
797 853 5.239525 GCTGTCAGTTGTTAAAACTCCTGAT 59.760 40.000 14.01 0.00 38.04 2.90
805 861 4.697828 TCTGTGTGCTGTCAGTTGTTAAAA 59.302 37.500 0.93 0.00 33.89 1.52
913 969 4.920340 CAGTGTGAGTGAGTTCATCAGTAC 59.080 45.833 0.00 0.00 41.87 2.73
914 970 4.827284 TCAGTGTGAGTGAGTTCATCAGTA 59.173 41.667 0.00 0.00 41.87 2.74
915 971 3.638627 TCAGTGTGAGTGAGTTCATCAGT 59.361 43.478 0.00 0.00 44.62 3.41
1016 1072 2.125391 GCCTCGACATCAGCTGCA 60.125 61.111 9.47 0.00 0.00 4.41
1200 1256 4.308458 CCGTGGTGGTCGAAGCCA 62.308 66.667 0.00 0.00 35.93 4.75
1315 1371 0.937304 TGCAGTGAAGAAACGAGCAC 59.063 50.000 0.00 0.00 33.20 4.40
1430 1486 3.795623 CAGAATGCCTGAATTTGGAGG 57.204 47.619 3.03 0.00 45.78 4.30
1464 1520 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
1465 1521 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
1466 1522 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
1467 1523 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
1468 1524 3.544682 TCATACGTGCGACAAGTAATTCG 59.455 43.478 0.00 0.00 32.82 3.34
1469 1525 5.444586 TTCATACGTGCGACAAGTAATTC 57.555 39.130 0.00 0.00 32.82 2.17
1470 1526 5.350365 ACATTCATACGTGCGACAAGTAATT 59.650 36.000 0.00 0.00 32.82 1.40
1471 1527 4.868171 ACATTCATACGTGCGACAAGTAAT 59.132 37.500 0.00 0.53 32.82 1.89
1472 1528 4.239304 ACATTCATACGTGCGACAAGTAA 58.761 39.130 0.00 0.00 32.82 2.24
1473 1529 3.840468 ACATTCATACGTGCGACAAGTA 58.160 40.909 0.00 7.72 33.49 2.24
1474 1530 2.683968 ACATTCATACGTGCGACAAGT 58.316 42.857 0.00 0.00 0.00 3.16
1475 1531 4.740205 AGATACATTCATACGTGCGACAAG 59.260 41.667 0.00 0.00 0.00 3.16
1476 1532 4.678622 AGATACATTCATACGTGCGACAA 58.321 39.130 0.00 0.00 0.00 3.18
1477 1533 4.301637 AGATACATTCATACGTGCGACA 57.698 40.909 0.00 0.00 0.00 4.35
1478 1534 5.686834 TCTAGATACATTCATACGTGCGAC 58.313 41.667 0.00 0.00 0.00 5.19
1479 1535 5.934935 TCTAGATACATTCATACGTGCGA 57.065 39.130 0.00 0.00 0.00 5.10
1480 1536 6.086871 ACATCTAGATACATTCATACGTGCG 58.913 40.000 4.54 0.00 0.00 5.34
1481 1537 9.574458 AATACATCTAGATACATTCATACGTGC 57.426 33.333 4.54 0.00 0.00 5.34
1508 1564 9.529325 CGTTGAAATGGATGTATCTAGAACTAA 57.471 33.333 0.00 0.00 0.00 2.24
1509 1565 8.141909 CCGTTGAAATGGATGTATCTAGAACTA 58.858 37.037 0.00 0.00 37.24 2.24
1510 1566 6.986817 CCGTTGAAATGGATGTATCTAGAACT 59.013 38.462 0.00 0.00 37.24 3.01
1511 1567 6.292919 GCCGTTGAAATGGATGTATCTAGAAC 60.293 42.308 5.45 0.00 37.24 3.01
1512 1568 5.758296 GCCGTTGAAATGGATGTATCTAGAA 59.242 40.000 5.45 0.00 37.24 2.10
1513 1569 5.297547 GCCGTTGAAATGGATGTATCTAGA 58.702 41.667 5.45 0.00 37.24 2.43
1514 1570 4.150627 CGCCGTTGAAATGGATGTATCTAG 59.849 45.833 5.45 0.00 37.24 2.43
1515 1571 4.055360 CGCCGTTGAAATGGATGTATCTA 58.945 43.478 5.45 0.00 37.24 1.98
1516 1572 2.872245 CGCCGTTGAAATGGATGTATCT 59.128 45.455 5.45 0.00 37.24 1.98
1517 1573 2.869801 TCGCCGTTGAAATGGATGTATC 59.130 45.455 5.45 0.00 37.24 2.24
1518 1574 2.872245 CTCGCCGTTGAAATGGATGTAT 59.128 45.455 5.45 0.00 37.24 2.29
1519 1575 2.276201 CTCGCCGTTGAAATGGATGTA 58.724 47.619 5.45 0.00 37.24 2.29
1520 1576 1.086696 CTCGCCGTTGAAATGGATGT 58.913 50.000 5.45 0.00 37.24 3.06
1521 1577 1.086696 ACTCGCCGTTGAAATGGATG 58.913 50.000 5.45 0.00 37.24 3.51
1522 1578 2.684001 TACTCGCCGTTGAAATGGAT 57.316 45.000 5.45 0.00 37.24 3.41
1523 1579 2.459060 TTACTCGCCGTTGAAATGGA 57.541 45.000 5.45 0.00 37.24 3.41
1524 1580 3.757745 AATTACTCGCCGTTGAAATGG 57.242 42.857 0.00 0.00 38.15 3.16
1525 1581 3.851403 CCAAATTACTCGCCGTTGAAATG 59.149 43.478 0.00 0.00 0.00 2.32
1526 1582 3.754323 TCCAAATTACTCGCCGTTGAAAT 59.246 39.130 0.00 0.00 0.00 2.17
1527 1583 3.139850 TCCAAATTACTCGCCGTTGAAA 58.860 40.909 0.00 0.00 0.00 2.69
1528 1584 2.768698 TCCAAATTACTCGCCGTTGAA 58.231 42.857 0.00 0.00 0.00 2.69
1529 1585 2.459060 TCCAAATTACTCGCCGTTGA 57.541 45.000 0.00 0.00 0.00 3.18
1530 1586 2.723618 CGTTCCAAATTACTCGCCGTTG 60.724 50.000 0.00 0.00 0.00 4.10
1531 1587 1.461897 CGTTCCAAATTACTCGCCGTT 59.538 47.619 0.00 0.00 0.00 4.44
1532 1588 1.073177 CGTTCCAAATTACTCGCCGT 58.927 50.000 0.00 0.00 0.00 5.68
1533 1589 0.372334 CCGTTCCAAATTACTCGCCG 59.628 55.000 0.00 0.00 0.00 6.46
1534 1590 1.664151 CTCCGTTCCAAATTACTCGCC 59.336 52.381 0.00 0.00 0.00 5.54
1535 1591 1.664151 CCTCCGTTCCAAATTACTCGC 59.336 52.381 0.00 0.00 0.00 5.03
1536 1592 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1537 1593 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1538 1594 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1539 1595 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1540 1596 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
1541 1597 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
1542 1598 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
1543 1599 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
1544 1600 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
1545 1601 0.970937 CAGCTACTCCCTCCGTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
1546 1602 1.677637 CCAGCTACTCCCTCCGTTCC 61.678 65.000 0.00 0.00 0.00 3.62
1547 1603 0.971447 ACCAGCTACTCCCTCCGTTC 60.971 60.000 0.00 0.00 0.00 3.95
1548 1604 1.078710 ACCAGCTACTCCCTCCGTT 59.921 57.895 0.00 0.00 0.00 4.44
1549 1605 1.682684 CACCAGCTACTCCCTCCGT 60.683 63.158 0.00 0.00 0.00 4.69
1550 1606 0.970937 TTCACCAGCTACTCCCTCCG 60.971 60.000 0.00 0.00 0.00 4.63
1551 1607 1.139853 CATTCACCAGCTACTCCCTCC 59.860 57.143 0.00 0.00 0.00 4.30
1552 1608 1.474143 GCATTCACCAGCTACTCCCTC 60.474 57.143 0.00 0.00 0.00 4.30
1553 1609 0.543749 GCATTCACCAGCTACTCCCT 59.456 55.000 0.00 0.00 0.00 4.20
1554 1610 0.543749 AGCATTCACCAGCTACTCCC 59.456 55.000 0.00 0.00 39.78 4.30
1555 1611 2.409948 AAGCATTCACCAGCTACTCC 57.590 50.000 0.00 0.00 40.90 3.85
1556 1612 4.773323 AAAAAGCATTCACCAGCTACTC 57.227 40.909 0.00 0.00 40.90 2.59
1557 1613 6.403636 CGATTAAAAAGCATTCACCAGCTACT 60.404 38.462 0.00 0.00 40.90 2.57
1558 1614 5.739161 CGATTAAAAAGCATTCACCAGCTAC 59.261 40.000 0.00 0.00 40.90 3.58
1559 1615 5.414454 ACGATTAAAAAGCATTCACCAGCTA 59.586 36.000 0.00 0.00 40.90 3.32
1601 1657 2.224549 CGAGTCAGATCGACCATAGGAC 59.775 54.545 12.17 0.00 46.69 3.85
1643 1699 6.015180 ACCCGAATATCATTTGAAATCCATGG 60.015 38.462 4.97 4.97 0.00 3.66
1674 1730 4.658063 TCACTTGTTCCCCACGATTATTT 58.342 39.130 0.00 0.00 0.00 1.40
1675 1731 4.295141 TCACTTGTTCCCCACGATTATT 57.705 40.909 0.00 0.00 0.00 1.40
1676 1732 3.992943 TCACTTGTTCCCCACGATTAT 57.007 42.857 0.00 0.00 0.00 1.28
1678 1734 2.649531 TTCACTTGTTCCCCACGATT 57.350 45.000 0.00 0.00 0.00 3.34
1715 1772 8.506168 ACAGAATTACAGTTCTCTCACAAAAA 57.494 30.769 0.00 0.00 36.33 1.94
1716 1773 9.778741 ATACAGAATTACAGTTCTCTCACAAAA 57.221 29.630 0.00 0.00 36.33 2.44
1721 1778 6.070824 TGCCATACAGAATTACAGTTCTCTCA 60.071 38.462 0.00 0.00 36.33 3.27
1762 1819 4.399303 CCAGTTTGGGATAGTGATTTCCAC 59.601 45.833 0.00 0.00 38.85 4.02
1774 1831 6.994421 ACATTTTAACTTCCAGTTTGGGAT 57.006 33.333 0.00 0.00 39.51 3.85
1786 1843 6.376299 GGAACGGAGGGAATACATTTTAACTT 59.624 38.462 0.00 0.00 0.00 2.66
1797 1854 7.310858 GGCTTATATTTAGGAACGGAGGGAATA 60.311 40.741 0.00 0.00 0.00 1.75
1798 1855 6.473758 GCTTATATTTAGGAACGGAGGGAAT 58.526 40.000 0.00 0.00 0.00 3.01
1799 1856 5.221783 GGCTTATATTTAGGAACGGAGGGAA 60.222 44.000 0.00 0.00 0.00 3.97
1800 1857 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
1801 1858 4.286291 AGGCTTATATTTAGGAACGGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
1802 1859 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
1804 1861 9.933723 GTAAATAGGCTTATATTTAGGAACGGA 57.066 33.333 0.00 0.00 37.95 4.69
1805 1862 9.715121 TGTAAATAGGCTTATATTTAGGAACGG 57.285 33.333 0.00 0.00 37.95 4.44
1840 1897 9.990360 TTCATTTTGCTTCGTATATAGTCCATA 57.010 29.630 0.00 0.00 0.00 2.74
1841 1898 8.902540 TTCATTTTGCTTCGTATATAGTCCAT 57.097 30.769 0.00 0.00 0.00 3.41
1842 1899 8.725405 TTTCATTTTGCTTCGTATATAGTCCA 57.275 30.769 0.00 0.00 0.00 4.02
1843 1900 9.042008 TCTTTCATTTTGCTTCGTATATAGTCC 57.958 33.333 0.00 0.00 0.00 3.85
1852 1909 9.167311 AGTATAGATTCTTTCATTTTGCTTCGT 57.833 29.630 0.00 0.00 0.00 3.85
1853 1910 9.643652 GAGTATAGATTCTTTCATTTTGCTTCG 57.356 33.333 0.00 0.00 0.00 3.79
1886 1943 8.535335 GGACCACATACAGATGAATATAGATGT 58.465 37.037 0.00 0.00 36.48 3.06
1887 1944 8.756927 AGGACCACATACAGATGAATATAGATG 58.243 37.037 0.00 0.00 36.48 2.90
1888 1945 8.907829 AGGACCACATACAGATGAATATAGAT 57.092 34.615 0.00 0.00 36.48 1.98
1889 1946 8.727100 AAGGACCACATACAGATGAATATAGA 57.273 34.615 0.00 0.00 36.48 1.98
1892 1949 9.950496 GAATAAGGACCACATACAGATGAATAT 57.050 33.333 0.00 0.00 36.48 1.28
1893 1950 8.933653 TGAATAAGGACCACATACAGATGAATA 58.066 33.333 0.00 0.00 36.48 1.75
1894 1951 7.805163 TGAATAAGGACCACATACAGATGAAT 58.195 34.615 0.00 0.00 36.48 2.57
1895 1952 7.194112 TGAATAAGGACCACATACAGATGAA 57.806 36.000 0.00 0.00 36.48 2.57
1896 1953 6.806668 TGAATAAGGACCACATACAGATGA 57.193 37.500 0.00 0.00 36.48 2.92
1897 1954 7.864108 TTTGAATAAGGACCACATACAGATG 57.136 36.000 0.00 0.00 39.16 2.90
1899 1956 9.778741 GATATTTGAATAAGGACCACATACAGA 57.221 33.333 0.00 0.00 0.00 3.41
1900 1957 9.784531 AGATATTTGAATAAGGACCACATACAG 57.215 33.333 0.00 0.00 0.00 2.74
1938 1995 8.591072 CCTACGTATTCCCTTCATTCCTAAATA 58.409 37.037 0.00 0.00 0.00 1.40
1939 1996 7.291651 TCCTACGTATTCCCTTCATTCCTAAAT 59.708 37.037 0.00 0.00 0.00 1.40
1940 1997 6.612456 TCCTACGTATTCCCTTCATTCCTAAA 59.388 38.462 0.00 0.00 0.00 1.85
1941 1998 6.138263 TCCTACGTATTCCCTTCATTCCTAA 58.862 40.000 0.00 0.00 0.00 2.69
1942 1999 5.708544 TCCTACGTATTCCCTTCATTCCTA 58.291 41.667 0.00 0.00 0.00 2.94
1943 2000 4.553678 TCCTACGTATTCCCTTCATTCCT 58.446 43.478 0.00 0.00 0.00 3.36
1944 2001 4.950205 TCCTACGTATTCCCTTCATTCC 57.050 45.455 0.00 0.00 0.00 3.01
1945 2002 7.803279 AAAATCCTACGTATTCCCTTCATTC 57.197 36.000 0.00 0.00 0.00 2.67
1946 2003 9.862149 ATTAAAATCCTACGTATTCCCTTCATT 57.138 29.630 0.00 0.00 0.00 2.57
1947 2004 9.503399 GATTAAAATCCTACGTATTCCCTTCAT 57.497 33.333 0.00 0.00 0.00 2.57
1948 2005 8.487848 TGATTAAAATCCTACGTATTCCCTTCA 58.512 33.333 0.00 0.00 34.50 3.02
1949 2006 8.897872 TGATTAAAATCCTACGTATTCCCTTC 57.102 34.615 0.00 0.00 34.50 3.46
1950 2007 7.444487 GCTGATTAAAATCCTACGTATTCCCTT 59.556 37.037 0.00 0.00 34.50 3.95
1951 2008 6.935208 GCTGATTAAAATCCTACGTATTCCCT 59.065 38.462 0.00 0.00 34.50 4.20
1952 2009 6.935208 AGCTGATTAAAATCCTACGTATTCCC 59.065 38.462 0.00 0.00 34.50 3.97
1953 2010 7.964604 AGCTGATTAAAATCCTACGTATTCC 57.035 36.000 0.00 0.00 34.50 3.01
1954 2011 9.865484 GAAAGCTGATTAAAATCCTACGTATTC 57.135 33.333 0.00 0.00 34.50 1.75
1955 2012 9.391006 TGAAAGCTGATTAAAATCCTACGTATT 57.609 29.630 0.00 0.00 34.50 1.89
1956 2013 8.958119 TGAAAGCTGATTAAAATCCTACGTAT 57.042 30.769 0.00 0.00 34.50 3.06
2000 2058 2.396590 TCTGGCCCGATAAAGTGAAC 57.603 50.000 0.00 0.00 0.00 3.18
2001 2059 2.238646 ACATCTGGCCCGATAAAGTGAA 59.761 45.455 9.59 0.00 0.00 3.18
2002 2060 1.837439 ACATCTGGCCCGATAAAGTGA 59.163 47.619 9.59 0.00 0.00 3.41
2003 2061 2.332063 ACATCTGGCCCGATAAAGTG 57.668 50.000 9.59 1.22 0.00 3.16
2004 2062 3.744530 GCTTACATCTGGCCCGATAAAGT 60.745 47.826 21.97 14.58 0.00 2.66
2005 2063 2.808543 GCTTACATCTGGCCCGATAAAG 59.191 50.000 19.19 19.19 0.00 1.85
2014 2166 3.268023 AGTTACAGGCTTACATCTGGC 57.732 47.619 0.00 0.00 35.47 4.85
2044 2196 2.143925 GTAGACACTGTTGTTCCTGGC 58.856 52.381 0.00 0.00 35.47 4.85
2082 2234 1.123928 AGCTCCTAGGGTTGAATCCG 58.876 55.000 9.46 0.00 0.00 4.18
2095 2247 2.679837 CAAAATGCGACATACAGCTCCT 59.320 45.455 0.00 0.00 0.00 3.69
2117 2285 2.956386 CGAATCGCCAACTATTTGTCG 58.044 47.619 0.00 0.00 35.41 4.35
2131 2299 2.395690 GCGTTCCTGTGCGAATCG 59.604 61.111 0.00 0.00 0.00 3.34
2141 2309 2.115266 CACTTTGGGGGCGTTCCT 59.885 61.111 0.00 0.00 35.33 3.36
2142 2310 3.680786 GCACTTTGGGGGCGTTCC 61.681 66.667 0.00 0.00 0.00 3.62
2143 2311 2.909965 TGCACTTTGGGGGCGTTC 60.910 61.111 0.00 0.00 0.00 3.95
2144 2312 3.223589 GTGCACTTTGGGGGCGTT 61.224 61.111 10.32 0.00 0.00 4.84
2147 2315 3.305516 CTGGTGCACTTTGGGGGC 61.306 66.667 17.98 0.00 0.00 5.80
2148 2316 3.305516 GCTGGTGCACTTTGGGGG 61.306 66.667 17.98 0.86 39.41 5.40
2149 2317 2.521465 TGCTGGTGCACTTTGGGG 60.521 61.111 17.98 2.23 45.31 4.96
2159 2327 2.661537 TTCGCTGTCGTGCTGGTG 60.662 61.111 0.00 0.00 36.96 4.17
2160 2328 2.661866 GTTCGCTGTCGTGCTGGT 60.662 61.111 0.00 0.00 36.96 4.00
2161 2329 2.661537 TGTTCGCTGTCGTGCTGG 60.662 61.111 0.00 0.00 36.96 4.85
2162 2330 2.546321 GTGTTCGCTGTCGTGCTG 59.454 61.111 0.00 0.00 36.96 4.41
2163 2331 2.661866 GGTGTTCGCTGTCGTGCT 60.662 61.111 0.00 0.00 36.96 4.40
2164 2332 2.943345 CTGGTGTTCGCTGTCGTGC 61.943 63.158 0.00 0.00 36.96 5.34
2165 2333 0.874175 TTCTGGTGTTCGCTGTCGTG 60.874 55.000 0.00 0.00 36.96 4.35
2166 2334 0.874607 GTTCTGGTGTTCGCTGTCGT 60.875 55.000 0.00 0.00 36.96 4.34
2167 2335 0.874175 TGTTCTGGTGTTCGCTGTCG 60.874 55.000 0.00 0.00 0.00 4.35
2168 2336 1.295792 TTGTTCTGGTGTTCGCTGTC 58.704 50.000 0.00 0.00 0.00 3.51
2169 2337 1.967319 ATTGTTCTGGTGTTCGCTGT 58.033 45.000 0.00 0.00 0.00 4.40
2170 2338 2.290367 TCAATTGTTCTGGTGTTCGCTG 59.710 45.455 5.13 0.00 0.00 5.18
2171 2339 2.571212 TCAATTGTTCTGGTGTTCGCT 58.429 42.857 5.13 0.00 0.00 4.93
2172 2340 3.347958 TTCAATTGTTCTGGTGTTCGC 57.652 42.857 5.13 0.00 0.00 4.70
2173 2341 6.362283 GGTAATTTCAATTGTTCTGGTGTTCG 59.638 38.462 5.13 0.00 0.00 3.95
2174 2342 7.206687 TGGTAATTTCAATTGTTCTGGTGTTC 58.793 34.615 5.13 0.00 0.00 3.18
2175 2343 7.118496 TGGTAATTTCAATTGTTCTGGTGTT 57.882 32.000 5.13 0.00 0.00 3.32
2176 2344 6.723298 TGGTAATTTCAATTGTTCTGGTGT 57.277 33.333 5.13 0.00 0.00 4.16
2177 2345 8.430801 TTTTGGTAATTTCAATTGTTCTGGTG 57.569 30.769 5.13 0.00 0.00 4.17
2202 2370 0.395173 AACGGGAGGGCGCATATTTT 60.395 50.000 10.83 0.00 0.00 1.82
2203 2371 1.101049 CAACGGGAGGGCGCATATTT 61.101 55.000 10.83 0.00 0.00 1.40
2205 2373 2.111043 CAACGGGAGGGCGCATAT 59.889 61.111 10.83 0.00 0.00 1.78
2207 2375 2.869503 CTAACAACGGGAGGGCGCAT 62.870 60.000 10.83 0.00 0.00 4.73
2210 2378 2.125269 CCTAACAACGGGAGGGCG 60.125 66.667 0.00 0.00 0.00 6.13
2219 2410 1.203313 GACACGCGCACCTAACAAC 59.797 57.895 5.73 0.00 0.00 3.32
2277 2468 2.613725 GGTAGTTCTTACAACCCCGTGG 60.614 54.545 0.00 0.00 33.73 4.94
2278 2469 2.037511 TGGTAGTTCTTACAACCCCGTG 59.962 50.000 0.00 0.00 33.73 4.94
2281 2472 2.908351 TCCTGGTAGTTCTTACAACCCC 59.092 50.000 0.00 0.00 33.73 4.95
2283 2474 3.597255 GCTCCTGGTAGTTCTTACAACC 58.403 50.000 0.00 0.00 33.73 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.