Multiple sequence alignment - TraesCS7D01G312200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G312200 chr7D 100.000 3577 0 0 1 3577 395878357 395874781 0.000000e+00 6606.0
1 TraesCS7D01G312200 chr7D 91.053 380 33 1 1522 1901 403215685 403215307 2.460000e-141 512.0
2 TraesCS7D01G312200 chr7D 80.460 174 9 5 2633 2785 403215318 403215149 3.780000e-20 110.0
3 TraesCS7D01G312200 chr7D 89.744 78 8 0 3500 3577 395851138 395851061 2.270000e-17 100.0
4 TraesCS7D01G312200 chr7A 93.519 3163 131 26 188 3286 449337080 449333928 0.000000e+00 4638.0
5 TraesCS7D01G312200 chr7A 94.702 151 3 4 5 152 449337330 449337182 2.780000e-56 230.0
6 TraesCS7D01G312200 chr7A 95.000 60 3 0 2634 2693 193577959 193578018 1.060000e-15 95.3
7 TraesCS7D01G312200 chr7A 88.462 78 9 0 3500 3577 449326841 449326764 1.060000e-15 95.3
8 TraesCS7D01G312200 chr7B 92.959 2812 100 35 525 3269 395591791 395589011 0.000000e+00 4006.0
9 TraesCS7D01G312200 chr7B 88.557 402 32 6 140 527 395605800 395605399 3.230000e-130 475.0
10 TraesCS7D01G312200 chr7B 95.735 211 7 1 3369 3577 395588901 395588691 4.420000e-89 339.0
11 TraesCS7D01G312200 chr7B 93.289 149 4 3 9 152 395605977 395605830 7.780000e-52 215.0
12 TraesCS7D01G312200 chr3D 92.368 380 28 1 1522 1901 281330674 281330296 1.130000e-149 540.0
13 TraesCS7D01G312200 chr3D 91.057 369 32 1 1522 1890 187444 187077 6.900000e-137 497.0
14 TraesCS7D01G312200 chr3D 80.460 174 9 5 2633 2785 281330307 281330138 3.780000e-20 110.0
15 TraesCS7D01G312200 chr3D 86.813 91 8 3 2695 2785 186994 186908 8.170000e-17 99.0
16 TraesCS7D01G312200 chr4A 91.339 381 31 2 1522 1901 599904475 599904096 1.470000e-143 520.0
17 TraesCS7D01G312200 chr4A 80.460 174 9 5 2633 2785 599904107 599903938 3.780000e-20 110.0
18 TraesCS7D01G312200 chr2A 90.426 376 35 1 1519 1894 426711502 426711876 8.920000e-136 494.0
19 TraesCS7D01G312200 chr2A 95.082 61 3 0 2633 2693 426711872 426711932 2.940000e-16 97.1
20 TraesCS7D01G312200 chr5A 92.169 332 26 0 1523 1854 426932060 426931729 1.500000e-128 470.0
21 TraesCS7D01G312200 chr5A 91.566 332 28 0 1523 1854 623556134 623555803 3.250000e-125 459.0
22 TraesCS7D01G312200 chr5D 79.885 174 10 7 2633 2785 119466356 119466187 1.760000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G312200 chr7D 395874781 395878357 3576 True 6606.0 6606 100.0000 1 3577 1 chr7D.!!$R2 3576
1 TraesCS7D01G312200 chr7D 403215149 403215685 536 True 311.0 512 85.7565 1522 2785 2 chr7D.!!$R3 1263
2 TraesCS7D01G312200 chr7A 449333928 449337330 3402 True 2434.0 4638 94.1105 5 3286 2 chr7A.!!$R2 3281
3 TraesCS7D01G312200 chr7B 395588691 395591791 3100 True 2172.5 4006 94.3470 525 3577 2 chr7B.!!$R1 3052
4 TraesCS7D01G312200 chr7B 395605399 395605977 578 True 345.0 475 90.9230 9 527 2 chr7B.!!$R2 518
5 TraesCS7D01G312200 chr3D 281330138 281330674 536 True 325.0 540 86.4140 1522 2785 2 chr3D.!!$R2 1263
6 TraesCS7D01G312200 chr3D 186908 187444 536 True 298.0 497 88.9350 1522 2785 2 chr3D.!!$R1 1263
7 TraesCS7D01G312200 chr4A 599903938 599904475 537 True 315.0 520 85.8995 1522 2785 2 chr4A.!!$R1 1263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1076 0.246635 CCGGCGAAGAAGGAGAAGAA 59.753 55.0 9.30 0.0 0.0 2.52 F
1934 2082 0.161658 CAAAGCTGCTGTACGACGTG 59.838 55.0 11.56 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2152 0.249073 CGGATGTAGAACTCCTGCCG 60.249 60.0 0.0 0.0 0.0 5.69 R
2917 3096 1.944177 AGGCAGACAGACATACAGGT 58.056 50.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 266 2.092592 ACTCCACCCTTCTGTTTCGTTT 60.093 45.455 0.00 0.00 0.00 3.60
233 304 8.347035 TCGTTAACCTGTTTCTCCAAATAAAAG 58.653 33.333 0.00 0.00 0.00 2.27
259 334 6.737254 TTTCTTTCGAGTTGTCAAAGAAGT 57.263 33.333 6.37 0.00 43.54 3.01
267 342 6.984474 TCGAGTTGTCAAAGAAGTGATACTTT 59.016 34.615 0.00 0.00 38.80 2.66
289 372 7.867403 ACTTTTGTGCATTGTGGAGTATTAAAG 59.133 33.333 0.00 0.00 0.00 1.85
329 412 2.529632 TGAGCAGCCTCGGTATATCAT 58.470 47.619 0.00 0.00 41.13 2.45
347 430 1.472878 CATCCTCTTGACGTCTTCGGA 59.527 52.381 17.92 16.27 41.85 4.55
429 512 6.456449 CGGTCAAATTTTAGTTACAGGATCGG 60.456 42.308 0.00 0.00 0.00 4.18
460 543 5.863935 TCATGCGATATTTCTACTCCATTCG 59.136 40.000 0.00 0.00 0.00 3.34
481 564 6.683090 TCGCATAACAAACTGTTAAAATGC 57.317 33.333 12.56 12.56 44.84 3.56
486 569 7.569226 GCATAACAAACTGTTAAAATGCCACAG 60.569 37.037 11.91 0.00 44.84 3.66
609 695 0.811281 GCGGGACTCAAAGGGAATTG 59.189 55.000 0.00 0.00 0.00 2.32
610 696 1.613255 GCGGGACTCAAAGGGAATTGA 60.613 52.381 0.00 0.00 37.70 2.57
611 697 2.790433 CGGGACTCAAAGGGAATTGAA 58.210 47.619 0.00 0.00 38.75 2.69
612 698 3.356290 CGGGACTCAAAGGGAATTGAAT 58.644 45.455 0.00 0.00 38.75 2.57
613 699 3.763897 CGGGACTCAAAGGGAATTGAATT 59.236 43.478 0.00 0.00 38.75 2.17
614 700 4.220602 CGGGACTCAAAGGGAATTGAATTT 59.779 41.667 0.00 0.00 38.75 1.82
615 701 5.482006 GGGACTCAAAGGGAATTGAATTTG 58.518 41.667 0.00 0.00 38.75 2.32
616 702 4.931601 GGACTCAAAGGGAATTGAATTTGC 59.068 41.667 0.00 0.00 38.75 3.68
618 704 5.927819 ACTCAAAGGGAATTGAATTTGCAA 58.072 33.333 0.00 0.00 38.75 4.08
619 705 5.993441 ACTCAAAGGGAATTGAATTTGCAAG 59.007 36.000 0.00 0.00 38.75 4.01
620 706 4.756135 TCAAAGGGAATTGAATTTGCAAGC 59.244 37.500 0.00 0.00 36.42 4.01
622 708 4.354893 AGGGAATTGAATTTGCAAGCAA 57.645 36.364 2.89 2.89 0.00 3.91
771 893 2.253452 CAGCGACAACAGCCAAGC 59.747 61.111 0.00 0.00 34.64 4.01
883 1005 3.242518 TCGCTCGCTTATATACATGCAC 58.757 45.455 0.00 0.00 0.00 4.57
888 1010 2.411748 CGCTTATATACATGCACACGGG 59.588 50.000 0.00 0.00 0.00 5.28
891 1013 0.472044 ATATACATGCACACGGGCCA 59.528 50.000 4.39 0.00 0.00 5.36
954 1076 0.246635 CCGGCGAAGAAGGAGAAGAA 59.753 55.000 9.30 0.00 0.00 2.52
1158 1287 0.822121 GCGGGTTCTTGGTTCTTGGT 60.822 55.000 0.00 0.00 0.00 3.67
1162 1291 2.661718 GGTTCTTGGTTCTTGGTTGGA 58.338 47.619 0.00 0.00 0.00 3.53
1178 1307 3.569701 GGTTGGAGTGCTCATTTTTCTGA 59.430 43.478 1.41 0.00 0.00 3.27
1243 1372 4.021925 GAGGCGGTCCAGGTGCTT 62.022 66.667 0.00 0.00 33.74 3.91
1292 1421 1.797211 CTACATCTCCTCCGACGGCC 61.797 65.000 9.66 0.00 0.00 6.13
1383 1512 0.639943 TACATCCAGCAGGTAGGGGA 59.360 55.000 0.00 0.00 35.89 4.81
1384 1513 0.253160 ACATCCAGCAGGTAGGGGAA 60.253 55.000 0.00 0.00 35.89 3.97
1385 1514 0.471617 CATCCAGCAGGTAGGGGAAG 59.528 60.000 0.00 0.00 35.89 3.46
1386 1515 0.695803 ATCCAGCAGGTAGGGGAAGG 60.696 60.000 0.00 0.00 35.89 3.46
1387 1516 2.378634 CCAGCAGGTAGGGGAAGGG 61.379 68.421 0.00 0.00 0.00 3.95
1392 1524 0.919710 CAGGTAGGGGAAGGGGAAAG 59.080 60.000 0.00 0.00 0.00 2.62
1401 1533 1.166129 GAAGGGGAAAGTTTCTCGCC 58.834 55.000 15.05 8.83 44.28 5.54
1532 1679 1.362406 GGCTAACGGTGCTTGAGCTC 61.362 60.000 6.82 6.82 42.66 4.09
1592 1739 2.046892 GTGCTGGCCGACATGAGT 60.047 61.111 0.00 0.00 0.00 3.41
1895 2043 2.632544 CGGCTACTCGGTGGTCACA 61.633 63.158 3.40 0.00 0.00 3.58
1934 2082 0.161658 CAAAGCTGCTGTACGACGTG 59.838 55.000 11.56 0.00 0.00 4.49
2237 2392 4.969196 CTGTGCACGCCAGACCGT 62.969 66.667 13.13 0.00 43.11 4.83
2587 2742 0.401356 TGCTCATGAGGCAGAAACCA 59.599 50.000 23.89 7.98 34.56 3.67
2588 2743 1.005097 TGCTCATGAGGCAGAAACCAT 59.995 47.619 23.89 0.00 34.56 3.55
2609 2764 1.078143 AACGATCAAGCCAGGCTCC 60.078 57.895 16.53 3.71 38.25 4.70
2623 2778 3.842923 CTCCGCTCGTCTGGGCAT 61.843 66.667 0.00 0.00 0.00 4.40
2641 2796 1.608590 CATCCTGCTTGGTTCAACGTT 59.391 47.619 0.00 0.00 37.07 3.99
2671 2826 3.550437 ATCATCTCTTGTACAGTGGCC 57.450 47.619 0.00 0.00 0.00 5.36
2722 2898 3.387962 AGAAGCAGGATGATGGAACCTA 58.612 45.455 0.00 0.00 39.69 3.08
2908 3087 2.909965 GGGACGGTTGGCTTTGCA 60.910 61.111 0.00 0.00 0.00 4.08
2916 3095 1.888512 GGTTGGCTTTGCATCTCTTCA 59.111 47.619 0.00 0.00 0.00 3.02
2917 3096 2.297033 GGTTGGCTTTGCATCTCTTCAA 59.703 45.455 0.00 0.00 0.00 2.69
2923 3102 3.753272 GCTTTGCATCTCTTCAACCTGTA 59.247 43.478 0.00 0.00 0.00 2.74
2971 3150 2.500098 TCTGCCCCTGTGTGATTAGTAC 59.500 50.000 0.00 0.00 0.00 2.73
3225 3411 0.981183 TGGCACTCCGTTTGTAGGAT 59.019 50.000 0.00 0.00 37.13 3.24
3292 3502 7.287696 TGCAGAGTATCAAAGTATGGAGTGATA 59.712 37.037 0.00 0.00 37.82 2.15
3304 3514 5.965033 ATGGAGTGATAAATGAGGAGTGT 57.035 39.130 0.00 0.00 0.00 3.55
3321 3556 4.523083 GAGTGTATTATGGGGCTTGACAA 58.477 43.478 0.00 0.00 0.00 3.18
3344 3579 3.534524 CATACAATGCGTTCACACACA 57.465 42.857 0.00 0.00 0.00 3.72
3345 3580 3.225548 CATACAATGCGTTCACACACAC 58.774 45.455 0.00 0.00 0.00 3.82
3346 3581 1.090728 ACAATGCGTTCACACACACA 58.909 45.000 0.00 0.00 0.00 3.72
3347 3582 1.470494 ACAATGCGTTCACACACACAA 59.530 42.857 0.00 0.00 0.00 3.33
3348 3583 2.095008 ACAATGCGTTCACACACACAAA 60.095 40.909 0.00 0.00 0.00 2.83
3349 3584 2.919859 CAATGCGTTCACACACACAAAA 59.080 40.909 0.00 0.00 0.00 2.44
3350 3585 2.706555 TGCGTTCACACACACAAAAA 57.293 40.000 0.00 0.00 0.00 1.94
3387 3622 4.728534 TGCAATGCGGTAAATACAAGAAC 58.271 39.130 0.00 0.00 0.00 3.01
3477 3714 2.684881 CGAAGAGCATGGGCAAGTAAAT 59.315 45.455 0.00 0.00 44.61 1.40
3496 3733 5.750352 AAATGAATTTGGTTGCTCCTGAT 57.250 34.783 0.80 0.00 37.07 2.90
3502 3739 3.788227 TTGGTTGCTCCTGATTACAGT 57.212 42.857 0.00 0.00 42.05 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.609072 GTCTCCAACACAAAAGAGGGC 59.391 52.381 0.00 0.00 0.00 5.19
4 5 2.880890 CCTGTCTCCAACACAAAAGAGG 59.119 50.000 0.00 0.00 33.24 3.69
5 6 2.880890 CCCTGTCTCCAACACAAAAGAG 59.119 50.000 0.00 0.00 33.24 2.85
11 12 2.055689 CTGCCCCTGTCTCCAACACA 62.056 60.000 0.00 0.00 33.24 3.72
12 13 1.302832 CTGCCCCTGTCTCCAACAC 60.303 63.158 0.00 0.00 33.24 3.32
13 14 1.768684 GACTGCCCCTGTCTCCAACA 61.769 60.000 0.00 0.00 36.18 3.33
59 60 2.289274 CACTTGTATCACCAAACACGCA 59.711 45.455 0.00 0.00 0.00 5.24
63 64 2.937519 TGCCACTTGTATCACCAAACA 58.062 42.857 0.00 0.00 0.00 2.83
162 208 1.891150 GGGTGGAGTTTCTCTGTACGA 59.109 52.381 0.00 0.00 0.00 3.43
175 221 2.256117 AACGAAACAGAAGGGTGGAG 57.744 50.000 0.00 0.00 0.00 3.86
198 269 1.005867 AGGTTAACGAGCGGCGAAA 60.006 52.632 12.98 0.77 44.57 3.46
233 304 7.910683 ACTTCTTTGACAACTCGAAAGAAATTC 59.089 33.333 0.00 0.00 42.32 2.17
235 306 7.065803 TCACTTCTTTGACAACTCGAAAGAAAT 59.934 33.333 0.00 0.00 42.32 2.17
243 318 6.771188 AAGTATCACTTCTTTGACAACTCG 57.229 37.500 0.00 0.00 31.77 4.18
259 334 4.826733 ACTCCACAATGCACAAAAGTATCA 59.173 37.500 0.00 0.00 0.00 2.15
267 342 6.488344 TCACTTTAATACTCCACAATGCACAA 59.512 34.615 0.00 0.00 0.00 3.33
289 372 3.932710 TCAACATAGAGCCATCGTTTCAC 59.067 43.478 0.00 0.00 0.00 3.18
329 412 0.879765 GTCCGAAGACGTCAAGAGGA 59.120 55.000 19.50 16.80 37.88 3.71
347 430 2.035632 TGGCGAATTTTTCCTTGTGGT 58.964 42.857 0.00 0.00 34.23 4.16
441 524 7.328493 TGTTATGCGAATGGAGTAGAAATATCG 59.672 37.037 0.00 0.00 0.00 2.92
449 532 5.351465 ACAGTTTGTTATGCGAATGGAGTAG 59.649 40.000 0.00 0.00 0.00 2.57
460 543 6.201806 TGTGGCATTTTAACAGTTTGTTATGC 59.798 34.615 14.97 14.97 43.63 3.14
462 545 6.928492 CCTGTGGCATTTTAACAGTTTGTTAT 59.072 34.615 2.81 0.00 41.83 1.89
481 564 4.488126 CCACGATTATATTTGCCTGTGG 57.512 45.455 0.00 0.00 39.58 4.17
498 581 0.172578 TATGAACAGCCTCGACCACG 59.827 55.000 0.00 0.00 41.26 4.94
530 613 6.497785 TCTGCTTACGCTCCTATATAGAAC 57.502 41.667 11.53 0.00 36.97 3.01
532 615 6.002082 TGTTCTGCTTACGCTCCTATATAGA 58.998 40.000 11.53 0.00 36.97 1.98
535 618 4.262079 GGTGTTCTGCTTACGCTCCTATAT 60.262 45.833 0.00 0.00 36.97 0.86
609 695 1.001181 TGGAGGCTTGCTTGCAAATTC 59.999 47.619 9.39 7.05 34.04 2.17
610 696 1.050204 TGGAGGCTTGCTTGCAAATT 58.950 45.000 9.39 0.00 34.04 1.82
611 697 0.319405 GTGGAGGCTTGCTTGCAAAT 59.681 50.000 9.39 0.00 34.04 2.32
612 698 1.741525 GTGGAGGCTTGCTTGCAAA 59.258 52.632 9.39 0.00 34.04 3.68
613 699 2.554636 CGTGGAGGCTTGCTTGCAA 61.555 57.895 7.83 7.83 34.04 4.08
614 700 2.979676 CGTGGAGGCTTGCTTGCA 60.980 61.111 0.00 0.00 34.04 4.08
615 701 2.980233 ACGTGGAGGCTTGCTTGC 60.980 61.111 0.00 0.00 0.00 4.01
616 702 2.620112 CCACGTGGAGGCTTGCTTG 61.620 63.158 31.31 0.00 37.39 4.01
771 893 1.276421 TGGAGGCTTCTTCTTCTTCCG 59.724 52.381 0.00 0.00 0.00 4.30
891 1013 2.033448 TCCGCGGAACCAAATGCT 59.967 55.556 28.99 0.00 0.00 3.79
894 1016 2.033448 TGCTCCGCGGAACCAAAT 59.967 55.556 30.53 0.00 0.00 2.32
1158 1287 3.822735 CCTCAGAAAAATGAGCACTCCAA 59.177 43.478 0.00 0.00 44.47 3.53
1162 1291 3.152341 CCACCTCAGAAAAATGAGCACT 58.848 45.455 0.00 0.00 44.47 4.40
1178 1307 1.525995 CGACCTGCAACAACCACCT 60.526 57.895 0.00 0.00 0.00 4.00
1243 1372 2.473891 TAGACAGGTCGAGGTCCGCA 62.474 60.000 7.88 0.00 38.37 5.69
1292 1421 1.667724 GAAGACATCCATGAACCAGCG 59.332 52.381 0.00 0.00 0.00 5.18
1383 1512 0.771755 AGGCGAGAAACTTTCCCCTT 59.228 50.000 0.00 0.00 0.00 3.95
1384 1513 0.771755 AAGGCGAGAAACTTTCCCCT 59.228 50.000 0.00 0.03 0.00 4.79
1385 1514 1.166129 GAAGGCGAGAAACTTTCCCC 58.834 55.000 0.00 0.00 0.00 4.81
1386 1515 2.186532 AGAAGGCGAGAAACTTTCCC 57.813 50.000 0.00 0.00 0.00 3.97
1387 1516 2.226674 CCAAGAAGGCGAGAAACTTTCC 59.773 50.000 0.00 0.00 0.00 3.13
1880 2028 0.526662 GGACTGTGACCACCGAGTAG 59.473 60.000 0.00 0.00 0.00 2.57
2004 2152 0.249073 CGGATGTAGAACTCCTGCCG 60.249 60.000 0.00 0.00 0.00 5.69
2300 2455 1.966451 GCCCTTGGTTGACACCTCG 60.966 63.158 0.00 0.00 44.61 4.63
2306 2461 1.586154 CCATGTCGCCCTTGGTTGAC 61.586 60.000 0.00 0.00 34.43 3.18
2587 2742 1.210478 AGCCTGGCTTGATCGTTGTAT 59.790 47.619 17.22 0.00 33.89 2.29
2588 2743 0.613260 AGCCTGGCTTGATCGTTGTA 59.387 50.000 17.22 0.00 33.89 2.41
2609 2764 3.842923 AGGATGCCCAGACGAGCG 61.843 66.667 0.00 0.00 33.88 5.03
2623 2778 1.305201 GAACGTTGAACCAAGCAGGA 58.695 50.000 5.00 0.00 41.22 3.86
2641 2796 6.710278 TGTACAAGAGATGATTGTGGAATGA 58.290 36.000 0.00 0.00 40.92 2.57
2671 2826 1.208052 TGCTTTCCTGGATCTTCCTCG 59.792 52.381 0.00 0.00 37.46 4.63
2722 2898 1.694150 TCTGCAACTGGTCTACTGCTT 59.306 47.619 0.00 0.00 35.78 3.91
2908 3087 5.719085 AGACAGACATACAGGTTGAAGAGAT 59.281 40.000 0.00 0.00 0.00 2.75
2916 3095 2.260822 AGGCAGACAGACATACAGGTT 58.739 47.619 0.00 0.00 0.00 3.50
2917 3096 1.944177 AGGCAGACAGACATACAGGT 58.056 50.000 0.00 0.00 0.00 4.00
2923 3102 3.547567 GCAGAAGGCAGACAGACAT 57.452 52.632 0.00 0.00 43.97 3.06
2971 3150 5.581605 TCAACAAAGCAGAAAAGCAGTTAG 58.418 37.500 0.00 0.00 36.85 2.34
3292 3502 4.416848 AGCCCCATAATACACTCCTCATTT 59.583 41.667 0.00 0.00 0.00 2.32
3326 3561 2.280628 TGTGTGTGTGAACGCATTGTA 58.719 42.857 0.00 0.00 38.74 2.41
3328 3563 2.185867 TTGTGTGTGTGAACGCATTG 57.814 45.000 0.00 0.00 40.09 2.82
3363 3598 4.919206 TCTTGTATTTACCGCATTGCATG 58.081 39.130 9.69 1.46 0.00 4.06
3364 3599 5.339990 GTTCTTGTATTTACCGCATTGCAT 58.660 37.500 9.69 0.00 0.00 3.96
3365 3600 4.380023 GGTTCTTGTATTTACCGCATTGCA 60.380 41.667 9.69 0.00 0.00 4.08
3366 3601 4.102649 GGTTCTTGTATTTACCGCATTGC 58.897 43.478 0.00 0.00 0.00 3.56
3367 3602 5.303747 TGGTTCTTGTATTTACCGCATTG 57.696 39.130 0.00 0.00 33.29 2.82
3368 3603 5.621329 GCTTGGTTCTTGTATTTACCGCATT 60.621 40.000 0.00 0.00 33.29 3.56
3369 3604 4.142469 GCTTGGTTCTTGTATTTACCGCAT 60.142 41.667 0.00 0.00 33.29 4.73
3370 3605 3.189702 GCTTGGTTCTTGTATTTACCGCA 59.810 43.478 0.00 0.00 33.29 5.69
3371 3606 3.189702 TGCTTGGTTCTTGTATTTACCGC 59.810 43.478 0.00 0.00 33.29 5.68
3372 3607 4.454504 ACTGCTTGGTTCTTGTATTTACCG 59.545 41.667 0.00 0.00 33.29 4.02
3373 3608 5.959618 ACTGCTTGGTTCTTGTATTTACC 57.040 39.130 0.00 0.00 0.00 2.85
3374 3609 8.319143 TCTTACTGCTTGGTTCTTGTATTTAC 57.681 34.615 0.00 0.00 0.00 2.01
3375 3610 8.911918 TTCTTACTGCTTGGTTCTTGTATTTA 57.088 30.769 0.00 0.00 0.00 1.40
3387 3622 6.317140 TCTGCTGATAAATTCTTACTGCTTGG 59.683 38.462 0.00 0.00 0.00 3.61
3425 3662 7.370808 AGGTTTCAGGAAAACTGTTAGGCATT 61.371 38.462 11.31 0.00 45.78 3.56
3477 3714 5.076182 TGTAATCAGGAGCAACCAAATTCA 58.924 37.500 2.96 1.52 42.04 2.57
3502 3739 5.235850 TCCAATGCTAAACTCAGTTGGTA 57.764 39.130 0.00 0.00 37.82 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.