Multiple sequence alignment - TraesCS7D01G311800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G311800 chr7D 100.000 3239 0 0 1 3239 395187323 395190561 0.000000e+00 5982.0
1 TraesCS7D01G311800 chr7D 94.307 1370 62 7 795 2151 396445183 396443817 0.000000e+00 2084.0
2 TraesCS7D01G311800 chr7D 91.761 1420 75 23 863 2263 395295460 395296856 0.000000e+00 1936.0
3 TraesCS7D01G311800 chr7D 89.444 360 36 2 2306 2664 395296861 395297219 1.370000e-123 453.0
4 TraesCS7D01G311800 chr7D 90.333 300 28 1 248 547 41750467 41750169 3.030000e-105 392.0
5 TraesCS7D01G311800 chr7D 90.391 281 19 6 1 281 41767257 41766985 2.380000e-96 363.0
6 TraesCS7D01G311800 chr7D 79.550 533 83 19 285 801 41750461 41749939 1.110000e-94 357.0
7 TraesCS7D01G311800 chr7A 94.676 1465 58 8 836 2291 448478757 448480210 0.000000e+00 2255.0
8 TraesCS7D01G311800 chr7A 93.294 1372 77 7 795 2154 450092803 450091435 0.000000e+00 2010.0
9 TraesCS7D01G311800 chr7A 90.867 1303 100 9 864 2151 448473140 448474438 0.000000e+00 1729.0
10 TraesCS7D01G311800 chr7A 92.245 980 51 6 2277 3239 448481275 448482246 0.000000e+00 1365.0
11 TraesCS7D01G311800 chr7A 87.588 427 38 7 1 423 559400132 559399717 6.280000e-132 481.0
12 TraesCS7D01G311800 chr7A 91.441 222 19 0 2306 2527 448435511 448435732 4.060000e-79 305.0
13 TraesCS7D01G311800 chr7A 77.798 545 85 29 285 807 559399465 559398935 1.460000e-78 303.0
14 TraesCS7D01G311800 chr7B 94.134 1415 68 5 836 2236 394864181 394865594 0.000000e+00 2139.0
15 TraesCS7D01G311800 chr7B 94.134 1415 68 5 836 2236 394912346 394913759 0.000000e+00 2139.0
16 TraesCS7D01G311800 chr7B 95.322 1304 56 3 852 2151 399872609 399871307 0.000000e+00 2065.0
17 TraesCS7D01G311800 chr7B 93.984 1363 74 7 795 2151 399804135 399802775 0.000000e+00 2056.0
18 TraesCS7D01G311800 chr7B 87.177 1201 113 17 981 2151 394825382 394826571 0.000000e+00 1327.0
19 TraesCS7D01G311800 chr7B 85.146 377 34 9 2874 3237 394866106 394866473 1.840000e-97 366.0
20 TraesCS7D01G311800 chr7B 84.921 378 34 10 2874 3237 394914271 394914639 8.540000e-96 361.0
21 TraesCS7D01G311800 chr7B 88.832 197 14 4 2298 2491 394865679 394865870 5.400000e-58 235.0
22 TraesCS7D01G311800 chr7B 88.832 197 14 4 2298 2491 394913844 394914035 5.400000e-58 235.0
23 TraesCS7D01G311800 chr7B 87.037 108 8 4 2821 2927 394865991 394866093 2.040000e-22 117.0
24 TraesCS7D01G311800 chr7B 87.037 108 8 4 2821 2927 394914156 394914258 2.040000e-22 117.0
25 TraesCS7D01G311800 chr4D 84.988 806 70 23 1 795 481416769 481417534 0.000000e+00 771.0
26 TraesCS7D01G311800 chr2A 85.948 427 45 10 1 423 499776927 499776512 2.970000e-120 442.0
27 TraesCS7D01G311800 chr2A 86.935 398 38 7 1 394 52192917 52193304 4.960000e-118 435.0
28 TraesCS7D01G311800 chr2A 86.616 396 41 6 1 393 52219364 52219750 8.300000e-116 427.0
29 TraesCS7D01G311800 chr2A 89.180 305 31 2 239 543 52193630 52193932 2.360000e-101 379.0
30 TraesCS7D01G311800 chr2A 88.254 315 36 1 247 561 52220087 52220400 3.050000e-100 375.0
31 TraesCS7D01G311800 chr2A 89.256 242 17 4 560 794 52220368 52220607 8.790000e-76 294.0
32 TraesCS7D01G311800 chr2A 85.547 256 25 6 555 800 499775900 499775647 1.150000e-64 257.0
33 TraesCS7D01G311800 chr2A 84.906 159 23 1 266 423 52219590 52219748 3.340000e-35 159.0
34 TraesCS7D01G311800 chr1B 80.556 396 50 15 1 389 424181491 424181116 2.460000e-71 279.0
35 TraesCS7D01G311800 chr6D 89.205 176 16 3 2651 2823 351233609 351233434 1.960000e-52 217.0
36 TraesCS7D01G311800 chr5D 91.250 160 12 2 2662 2819 461072601 461072760 1.960000e-52 217.0
37 TraesCS7D01G311800 chr5D 90.419 167 13 3 2663 2827 529218327 529218162 1.960000e-52 217.0
38 TraesCS7D01G311800 chr2D 89.881 168 15 2 2658 2823 218046993 218046826 7.040000e-52 215.0
39 TraesCS7D01G311800 chr1D 90.361 166 13 3 2663 2826 332997336 332997172 7.040000e-52 215.0
40 TraesCS7D01G311800 chr1D 90.217 92 6 3 145 234 309575443 309575353 2.040000e-22 117.0
41 TraesCS7D01G311800 chr1D 100.000 28 0 0 557 584 319626807 319626834 6.000000e-03 52.8
42 TraesCS7D01G311800 chr6B 89.881 168 14 3 2661 2826 132353579 132353413 2.530000e-51 213.0
43 TraesCS7D01G311800 chr6B 83.582 67 7 4 2628 2694 442262766 442262828 3.490000e-05 60.2
44 TraesCS7D01G311800 chr3D 89.881 168 14 3 2662 2827 128214169 128214003 2.530000e-51 213.0
45 TraesCS7D01G311800 chr3A 89.474 171 15 3 2663 2830 600923240 600923070 2.530000e-51 213.0
46 TraesCS7D01G311800 chrUn 91.304 92 5 3 145 234 94992335 94992245 4.390000e-24 122.0
47 TraesCS7D01G311800 chr5B 92.857 42 2 1 2425 2465 133897000 133897041 3.490000e-05 60.2
48 TraesCS7D01G311800 chr5A 90.476 42 3 1 2425 2465 131667173 131667214 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G311800 chr7D 395187323 395190561 3238 False 5982.00 5982 100.00000 1 3239 1 chr7D.!!$F1 3238
1 TraesCS7D01G311800 chr7D 396443817 396445183 1366 True 2084.00 2084 94.30700 795 2151 1 chr7D.!!$R2 1356
2 TraesCS7D01G311800 chr7D 395295460 395297219 1759 False 1194.50 1936 90.60250 863 2664 2 chr7D.!!$F2 1801
3 TraesCS7D01G311800 chr7D 41749939 41750467 528 True 374.50 392 84.94150 248 801 2 chr7D.!!$R3 553
4 TraesCS7D01G311800 chr7A 450091435 450092803 1368 True 2010.00 2010 93.29400 795 2154 1 chr7A.!!$R1 1359
5 TraesCS7D01G311800 chr7A 448478757 448482246 3489 False 1810.00 2255 93.46050 836 3239 2 chr7A.!!$F3 2403
6 TraesCS7D01G311800 chr7A 448473140 448474438 1298 False 1729.00 1729 90.86700 864 2151 1 chr7A.!!$F2 1287
7 TraesCS7D01G311800 chr7A 559398935 559400132 1197 True 392.00 481 82.69300 1 807 2 chr7A.!!$R2 806
8 TraesCS7D01G311800 chr7B 399871307 399872609 1302 True 2065.00 2065 95.32200 852 2151 1 chr7B.!!$R2 1299
9 TraesCS7D01G311800 chr7B 399802775 399804135 1360 True 2056.00 2056 93.98400 795 2151 1 chr7B.!!$R1 1356
10 TraesCS7D01G311800 chr7B 394825382 394826571 1189 False 1327.00 1327 87.17700 981 2151 1 chr7B.!!$F1 1170
11 TraesCS7D01G311800 chr7B 394864181 394866473 2292 False 714.25 2139 88.78725 836 3237 4 chr7B.!!$F2 2401
12 TraesCS7D01G311800 chr7B 394912346 394914639 2293 False 713.00 2139 88.73100 836 3237 4 chr7B.!!$F3 2401
13 TraesCS7D01G311800 chr4D 481416769 481417534 765 False 771.00 771 84.98800 1 795 1 chr4D.!!$F1 794
14 TraesCS7D01G311800 chr2A 52192917 52193932 1015 False 407.00 435 88.05750 1 543 2 chr2A.!!$F1 542
15 TraesCS7D01G311800 chr2A 499775647 499776927 1280 True 349.50 442 85.74750 1 800 2 chr2A.!!$R1 799
16 TraesCS7D01G311800 chr2A 52219364 52220607 1243 False 313.75 427 87.25800 1 794 4 chr2A.!!$F2 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 824 0.033504 TGGAGTTTCGCTGGAGTCAC 59.966 55.0 0.0 0.0 0.00 3.67 F
690 1112 0.115152 TGTCTGGCAAGAGGAGAGGA 59.885 55.0 0.0 0.0 31.37 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 3804 0.181587 TGGGAAACTTGTGCCGAAGA 59.818 50.0 0.0 0.0 0.0 2.87 R
2621 5926 0.179134 GATGTTGAGGTCGAGGGTCG 60.179 60.0 0.0 0.0 42.1 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.444700 TTTTCGTCTGCCCCCGAGAC 62.445 60.000 0.00 0.00 37.14 3.36
94 95 2.923634 TACTAGGGAGCTGGCCGTCC 62.924 65.000 9.65 9.65 0.00 4.79
179 180 2.300996 GGCATCTCCCTCAACTCCA 58.699 57.895 0.00 0.00 0.00 3.86
183 184 1.134461 CATCTCCCTCAACTCCAGCTG 60.134 57.143 6.78 6.78 0.00 4.24
331 752 0.890542 TTGCTGCATTGGAGCTTCGT 60.891 50.000 27.21 0.00 37.35 3.85
332 753 1.136147 GCTGCATTGGAGCTTCGTG 59.864 57.895 21.41 0.00 33.37 4.35
334 755 0.957395 CTGCATTGGAGCTTCGTGGT 60.957 55.000 0.00 0.00 34.99 4.16
342 763 2.879462 GCTTCGTGGTAGTCGCCG 60.879 66.667 0.00 0.00 0.00 6.46
343 764 2.202570 CTTCGTGGTAGTCGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
351 772 3.627952 TAGTCGCCGGGGTTGCAA 61.628 61.111 19.13 0.00 0.00 4.08
362 783 2.275380 GGTTGCAATGGGGCTTCGT 61.275 57.895 0.59 0.00 34.04 3.85
365 786 2.435938 GCAATGGGGCTTCGTCGA 60.436 61.111 0.00 0.00 0.00 4.20
371 792 3.179939 GGGCTTCGTCGAAGTCGC 61.180 66.667 30.09 25.11 44.23 5.19
380 801 2.126228 CGAAGTCGCCGGTTGCTA 60.126 61.111 1.90 0.00 38.05 3.49
389 810 0.676782 GCCGGTTGCTACATTGGAGT 60.677 55.000 1.90 0.00 36.87 3.85
392 813 2.161609 CCGGTTGCTACATTGGAGTTTC 59.838 50.000 0.00 0.00 0.00 2.78
395 816 2.472695 TGCTACATTGGAGTTTCGCT 57.527 45.000 0.00 0.00 0.00 4.93
402 823 0.756294 TTGGAGTTTCGCTGGAGTCA 59.244 50.000 0.00 0.00 0.00 3.41
403 824 0.033504 TGGAGTTTCGCTGGAGTCAC 59.966 55.000 0.00 0.00 0.00 3.67
432 854 1.610102 GCATTGGAGCTCTGTCAGTGT 60.610 52.381 14.64 0.00 0.00 3.55
458 880 2.742372 GTGGCTGGCAACGTCGAT 60.742 61.111 5.14 0.00 42.51 3.59
459 881 2.741985 TGGCTGGCAACGTCGATG 60.742 61.111 0.00 2.26 42.51 3.84
460 882 2.434185 GGCTGGCAACGTCGATGA 60.434 61.111 12.58 0.00 42.51 2.92
461 883 2.740714 GGCTGGCAACGTCGATGAC 61.741 63.158 12.58 3.72 42.51 3.06
462 884 1.738099 GCTGGCAACGTCGATGACT 60.738 57.895 12.58 0.00 42.51 3.41
463 885 1.959899 GCTGGCAACGTCGATGACTG 61.960 60.000 12.58 10.16 42.51 3.51
464 886 1.959899 CTGGCAACGTCGATGACTGC 61.960 60.000 20.89 20.89 42.51 4.40
465 887 1.738099 GGCAACGTCGATGACTGCT 60.738 57.895 25.01 0.00 35.19 4.24
466 888 1.687494 GGCAACGTCGATGACTGCTC 61.687 60.000 25.01 16.42 35.19 4.26
467 889 1.687494 GCAACGTCGATGACTGCTCC 61.687 60.000 21.41 2.27 33.09 4.70
468 890 0.388520 CAACGTCGATGACTGCTCCA 60.389 55.000 12.58 0.00 0.00 3.86
469 891 0.532573 AACGTCGATGACTGCTCCAT 59.467 50.000 12.58 0.00 0.00 3.41
470 892 1.389555 ACGTCGATGACTGCTCCATA 58.610 50.000 12.58 0.00 0.00 2.74
471 893 1.065701 ACGTCGATGACTGCTCCATAC 59.934 52.381 12.58 0.00 0.00 2.39
472 894 1.335182 CGTCGATGACTGCTCCATACT 59.665 52.381 0.00 0.00 0.00 2.12
473 895 2.736978 GTCGATGACTGCTCCATACTG 58.263 52.381 0.00 0.00 0.00 2.74
474 896 2.099921 GTCGATGACTGCTCCATACTGT 59.900 50.000 0.00 0.00 0.00 3.55
475 897 2.099756 TCGATGACTGCTCCATACTGTG 59.900 50.000 0.00 0.00 0.00 3.66
488 910 2.046507 CTGTGGCCAGTGAGGAGC 60.047 66.667 5.11 0.00 41.22 4.70
489 911 2.848679 TGTGGCCAGTGAGGAGCA 60.849 61.111 5.11 0.00 41.22 4.26
490 912 2.046507 GTGGCCAGTGAGGAGCAG 60.047 66.667 5.11 0.00 41.22 4.24
491 913 2.203832 TGGCCAGTGAGGAGCAGA 60.204 61.111 0.00 0.00 41.22 4.26
492 914 2.288778 TGGCCAGTGAGGAGCAGAG 61.289 63.158 0.00 0.00 41.22 3.35
493 915 2.125188 GCCAGTGAGGAGCAGAGC 60.125 66.667 0.00 0.00 41.22 4.09
494 916 2.583520 CCAGTGAGGAGCAGAGCC 59.416 66.667 0.00 0.00 41.22 4.70
495 917 2.288778 CCAGTGAGGAGCAGAGCCA 61.289 63.158 0.00 0.00 41.22 4.75
496 918 1.218585 CAGTGAGGAGCAGAGCCAG 59.781 63.158 0.00 0.00 0.00 4.85
497 919 1.229145 AGTGAGGAGCAGAGCCAGT 60.229 57.895 0.00 0.00 0.00 4.00
498 920 1.079266 GTGAGGAGCAGAGCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
499 921 2.125188 GAGGAGCAGAGCCAGTGC 60.125 66.667 0.00 0.00 41.54 4.40
509 931 3.200593 GCCAGTGCTGCGATGGAG 61.201 66.667 22.63 2.39 36.09 3.86
510 932 2.580815 CCAGTGCTGCGATGGAGA 59.419 61.111 15.63 0.00 36.09 3.71
511 933 1.078918 CCAGTGCTGCGATGGAGAA 60.079 57.895 15.63 0.00 36.09 2.87
512 934 0.463295 CCAGTGCTGCGATGGAGAAT 60.463 55.000 15.63 0.00 36.09 2.40
513 935 0.935898 CAGTGCTGCGATGGAGAATC 59.064 55.000 0.00 0.00 0.00 2.52
514 936 0.538584 AGTGCTGCGATGGAGAATCA 59.461 50.000 0.00 0.00 36.25 2.57
515 937 1.140452 AGTGCTGCGATGGAGAATCAT 59.860 47.619 0.00 0.00 36.25 2.45
516 938 1.263484 GTGCTGCGATGGAGAATCATG 59.737 52.381 0.00 0.00 36.25 3.07
517 939 0.873054 GCTGCGATGGAGAATCATGG 59.127 55.000 0.00 0.00 36.25 3.66
518 940 1.541889 GCTGCGATGGAGAATCATGGA 60.542 52.381 0.00 0.00 36.25 3.41
519 941 2.414806 CTGCGATGGAGAATCATGGAG 58.585 52.381 0.00 0.00 36.25 3.86
520 942 1.071228 TGCGATGGAGAATCATGGAGG 59.929 52.381 0.00 0.00 36.25 4.30
521 943 1.071385 GCGATGGAGAATCATGGAGGT 59.929 52.381 0.00 0.00 36.25 3.85
522 944 2.869636 GCGATGGAGAATCATGGAGGTC 60.870 54.545 0.00 0.00 36.25 3.85
523 945 2.608998 CGATGGAGAATCATGGAGGTCG 60.609 54.545 0.00 0.00 36.25 4.79
524 946 1.866015 TGGAGAATCATGGAGGTCGT 58.134 50.000 0.00 0.00 36.25 4.34
525 947 1.757118 TGGAGAATCATGGAGGTCGTC 59.243 52.381 0.00 0.00 36.25 4.20
526 948 2.035632 GGAGAATCATGGAGGTCGTCT 58.964 52.381 0.00 0.00 36.25 4.18
527 949 2.223923 GGAGAATCATGGAGGTCGTCTG 60.224 54.545 0.00 0.00 36.25 3.51
528 950 2.428890 GAGAATCATGGAGGTCGTCTGT 59.571 50.000 0.00 0.00 33.17 3.41
529 951 2.167281 AGAATCATGGAGGTCGTCTGTG 59.833 50.000 0.00 0.00 0.00 3.66
530 952 0.176680 ATCATGGAGGTCGTCTGTGC 59.823 55.000 0.00 0.00 0.00 4.57
531 953 0.900182 TCATGGAGGTCGTCTGTGCT 60.900 55.000 0.00 0.00 0.00 4.40
532 954 0.738762 CATGGAGGTCGTCTGTGCTG 60.739 60.000 0.00 0.00 0.00 4.41
533 955 2.433318 GGAGGTCGTCTGTGCTGC 60.433 66.667 0.00 0.00 0.00 5.25
534 956 2.433318 GAGGTCGTCTGTGCTGCC 60.433 66.667 0.00 0.00 0.00 4.85
535 957 3.226429 GAGGTCGTCTGTGCTGCCA 62.226 63.158 0.00 0.00 0.00 4.92
536 958 2.046892 GGTCGTCTGTGCTGCCAT 60.047 61.111 0.00 0.00 0.00 4.40
537 959 2.393768 GGTCGTCTGTGCTGCCATG 61.394 63.158 0.00 0.00 0.00 3.66
538 960 2.046988 TCGTCTGTGCTGCCATGG 60.047 61.111 7.63 7.63 0.00 3.66
539 961 2.046988 CGTCTGTGCTGCCATGGA 60.047 61.111 18.40 0.00 0.00 3.41
540 962 2.104859 CGTCTGTGCTGCCATGGAG 61.105 63.158 18.40 11.30 0.00 3.86
541 963 2.045634 TCTGTGCTGCCATGGAGC 60.046 61.111 18.40 20.84 36.95 4.70
542 964 2.360726 CTGTGCTGCCATGGAGCA 60.361 61.111 25.68 25.68 44.22 4.26
548 970 3.057548 TGCCATGGAGCAGCGTTG 61.058 61.111 18.40 0.00 38.00 4.10
549 971 3.818787 GCCATGGAGCAGCGTTGG 61.819 66.667 18.40 2.59 0.00 3.77
550 972 3.818787 CCATGGAGCAGCGTTGGC 61.819 66.667 5.56 0.00 40.37 4.52
551 973 3.057548 CATGGAGCAGCGTTGGCA 61.058 61.111 0.16 0.00 43.41 4.92
552 974 3.058160 ATGGAGCAGCGTTGGCAC 61.058 61.111 0.16 0.00 43.41 5.01
553 975 3.557903 ATGGAGCAGCGTTGGCACT 62.558 57.895 0.16 0.00 43.41 4.40
554 976 3.730761 GGAGCAGCGTTGGCACTG 61.731 66.667 0.16 0.00 43.41 3.66
567 989 3.367743 CACTGCCGGTGCTGCAAT 61.368 61.111 2.77 0.00 39.83 3.56
568 990 3.367743 ACTGCCGGTGCTGCAATG 61.368 61.111 2.77 0.00 39.83 2.82
569 991 4.124351 CTGCCGGTGCTGCAATGG 62.124 66.667 15.06 15.06 38.46 3.16
570 992 4.657408 TGCCGGTGCTGCAATGGA 62.657 61.111 21.58 5.20 38.71 3.41
571 993 3.818787 GCCGGTGCTGCAATGGAG 61.819 66.667 21.58 0.00 33.53 3.86
572 994 3.818787 CCGGTGCTGCAATGGAGC 61.819 66.667 19.99 19.99 36.95 4.70
573 995 3.057548 CGGTGCTGCAATGGAGCA 61.058 61.111 25.19 25.19 44.22 4.26
576 998 3.504927 TGCTGCAATGGAGCATCG 58.495 55.556 25.19 0.00 44.68 3.84
577 999 1.377594 TGCTGCAATGGAGCATCGT 60.378 52.632 25.19 0.00 44.68 3.73
578 1000 1.354506 GCTGCAATGGAGCATCGTC 59.645 57.895 21.74 0.00 44.68 4.20
579 1001 1.640069 CTGCAATGGAGCATCGTCG 59.360 57.895 0.00 0.00 44.68 5.12
580 1002 1.769098 CTGCAATGGAGCATCGTCGG 61.769 60.000 0.00 0.00 44.68 4.79
581 1003 1.815421 GCAATGGAGCATCGTCGGT 60.815 57.895 0.00 0.00 34.37 4.69
582 1004 2.009108 CAATGGAGCATCGTCGGTG 58.991 57.895 0.00 0.00 34.37 4.94
583 1005 1.815421 AATGGAGCATCGTCGGTGC 60.815 57.895 22.85 22.85 42.81 5.01
584 1006 3.740128 ATGGAGCATCGTCGGTGCC 62.740 63.158 26.21 17.09 43.50 5.01
600 1022 3.047877 CCGCCGGTGTGGTTCTTC 61.048 66.667 15.14 0.00 41.21 2.87
601 1023 3.411351 CGCCGGTGTGGTTCTTCG 61.411 66.667 6.91 0.00 41.21 3.79
602 1024 2.280592 GCCGGTGTGGTTCTTCGT 60.281 61.111 1.90 0.00 41.21 3.85
603 1025 2.604174 GCCGGTGTGGTTCTTCGTG 61.604 63.158 1.90 0.00 41.21 4.35
604 1026 1.227438 CCGGTGTGGTTCTTCGTGT 60.227 57.895 0.00 0.00 0.00 4.49
605 1027 0.812412 CCGGTGTGGTTCTTCGTGTT 60.812 55.000 0.00 0.00 0.00 3.32
606 1028 0.303493 CGGTGTGGTTCTTCGTGTTG 59.697 55.000 0.00 0.00 0.00 3.33
607 1029 1.375551 GGTGTGGTTCTTCGTGTTGT 58.624 50.000 0.00 0.00 0.00 3.32
608 1030 1.063469 GGTGTGGTTCTTCGTGTTGTG 59.937 52.381 0.00 0.00 0.00 3.33
609 1031 2.004017 GTGTGGTTCTTCGTGTTGTGA 58.996 47.619 0.00 0.00 0.00 3.58
610 1032 2.612212 GTGTGGTTCTTCGTGTTGTGAT 59.388 45.455 0.00 0.00 0.00 3.06
611 1033 2.611751 TGTGGTTCTTCGTGTTGTGATG 59.388 45.455 0.00 0.00 0.00 3.07
612 1034 1.601903 TGGTTCTTCGTGTTGTGATGC 59.398 47.619 0.00 0.00 0.00 3.91
613 1035 1.601903 GGTTCTTCGTGTTGTGATGCA 59.398 47.619 0.00 0.00 0.00 3.96
614 1036 2.349817 GGTTCTTCGTGTTGTGATGCAG 60.350 50.000 0.00 0.00 0.00 4.41
615 1037 0.867746 TCTTCGTGTTGTGATGCAGC 59.132 50.000 0.00 0.00 0.00 5.25
616 1038 0.587768 CTTCGTGTTGTGATGCAGCA 59.412 50.000 0.00 0.00 35.94 4.41
617 1039 1.198408 CTTCGTGTTGTGATGCAGCAT 59.802 47.619 8.41 7.91 40.35 3.79
618 1040 2.091852 TCGTGTTGTGATGCAGCATA 57.908 45.000 8.41 1.21 40.35 3.14
619 1041 2.001872 TCGTGTTGTGATGCAGCATAG 58.998 47.619 8.41 0.00 40.35 2.23
620 1042 1.530441 CGTGTTGTGATGCAGCATAGC 60.530 52.381 8.41 8.50 40.35 2.97
621 1043 1.097232 TGTTGTGATGCAGCATAGCC 58.903 50.000 8.41 0.39 33.32 3.93
622 1044 1.097232 GTTGTGATGCAGCATAGCCA 58.903 50.000 8.41 0.00 0.00 4.75
623 1045 1.065102 GTTGTGATGCAGCATAGCCAG 59.935 52.381 8.41 0.00 0.00 4.85
624 1046 0.464916 TGTGATGCAGCATAGCCAGG 60.465 55.000 8.41 0.00 0.00 4.45
625 1047 1.149854 TGATGCAGCATAGCCAGGG 59.850 57.895 8.22 0.00 0.00 4.45
626 1048 1.602888 GATGCAGCATAGCCAGGGG 60.603 63.158 8.22 0.00 0.00 4.79
639 1061 4.753662 AGGGGCGTCGAGGTGCTA 62.754 66.667 7.01 0.00 0.00 3.49
640 1062 4.509737 GGGGCGTCGAGGTGCTAC 62.510 72.222 7.01 0.00 0.00 3.58
641 1063 3.755628 GGGCGTCGAGGTGCTACA 61.756 66.667 7.01 0.00 0.00 2.74
642 1064 2.202623 GGCGTCGAGGTGCTACAG 60.203 66.667 7.01 0.00 0.00 2.74
643 1065 2.697761 GGCGTCGAGGTGCTACAGA 61.698 63.158 7.01 0.00 0.00 3.41
644 1066 1.226435 GCGTCGAGGTGCTACAGAG 60.226 63.158 7.01 0.00 0.00 3.35
645 1067 1.645704 GCGTCGAGGTGCTACAGAGA 61.646 60.000 7.01 0.00 0.00 3.10
646 1068 0.375454 CGTCGAGGTGCTACAGAGAG 59.625 60.000 0.00 0.00 0.00 3.20
647 1069 1.740297 GTCGAGGTGCTACAGAGAGA 58.260 55.000 0.00 0.00 0.00 3.10
648 1070 1.399089 GTCGAGGTGCTACAGAGAGAC 59.601 57.143 0.00 0.00 0.00 3.36
649 1071 1.003233 TCGAGGTGCTACAGAGAGACA 59.997 52.381 0.00 0.00 0.00 3.41
650 1072 1.813178 CGAGGTGCTACAGAGAGACAA 59.187 52.381 0.00 0.00 0.00 3.18
651 1073 2.159448 CGAGGTGCTACAGAGAGACAAG 60.159 54.545 0.00 0.00 0.00 3.16
652 1074 2.165437 GAGGTGCTACAGAGAGACAAGG 59.835 54.545 0.00 0.00 0.00 3.61
653 1075 1.896465 GGTGCTACAGAGAGACAAGGT 59.104 52.381 0.00 0.00 0.00 3.50
654 1076 2.094442 GGTGCTACAGAGAGACAAGGTC 60.094 54.545 0.00 0.00 0.00 3.85
655 1077 1.813178 TGCTACAGAGAGACAAGGTCG 59.187 52.381 0.00 0.00 37.67 4.79
656 1078 1.133407 GCTACAGAGAGACAAGGTCGG 59.867 57.143 0.00 0.00 37.67 4.79
657 1079 1.746220 CTACAGAGAGACAAGGTCGGG 59.254 57.143 0.00 0.00 37.67 5.14
658 1080 0.900647 ACAGAGAGACAAGGTCGGGG 60.901 60.000 0.00 0.00 37.67 5.73
659 1081 1.305381 AGAGAGACAAGGTCGGGGG 60.305 63.158 0.00 0.00 37.67 5.40
674 1096 3.266240 GGGGGTTCTCATGGTTGTC 57.734 57.895 0.00 0.00 0.00 3.18
675 1097 0.698818 GGGGGTTCTCATGGTTGTCT 59.301 55.000 0.00 0.00 0.00 3.41
676 1098 1.614317 GGGGGTTCTCATGGTTGTCTG 60.614 57.143 0.00 0.00 0.00 3.51
677 1099 1.614317 GGGGTTCTCATGGTTGTCTGG 60.614 57.143 0.00 0.00 0.00 3.86
678 1100 1.168714 GGTTCTCATGGTTGTCTGGC 58.831 55.000 0.00 0.00 0.00 4.85
679 1101 1.545428 GGTTCTCATGGTTGTCTGGCA 60.545 52.381 0.00 0.00 0.00 4.92
680 1102 2.229792 GTTCTCATGGTTGTCTGGCAA 58.770 47.619 0.00 0.00 34.16 4.52
681 1103 2.189594 TCTCATGGTTGTCTGGCAAG 57.810 50.000 0.00 0.00 37.83 4.01
682 1104 1.699083 TCTCATGGTTGTCTGGCAAGA 59.301 47.619 0.00 0.00 37.83 3.02
683 1105 2.082231 CTCATGGTTGTCTGGCAAGAG 58.918 52.381 0.00 0.00 37.83 2.85
684 1106 1.171308 CATGGTTGTCTGGCAAGAGG 58.829 55.000 0.00 0.00 37.83 3.69
685 1107 1.067295 ATGGTTGTCTGGCAAGAGGA 58.933 50.000 0.00 0.00 37.83 3.71
686 1108 0.397941 TGGTTGTCTGGCAAGAGGAG 59.602 55.000 0.00 0.00 37.83 3.69
687 1109 0.687354 GGTTGTCTGGCAAGAGGAGA 59.313 55.000 0.00 0.00 37.83 3.71
688 1110 1.338579 GGTTGTCTGGCAAGAGGAGAG 60.339 57.143 0.00 0.00 37.83 3.20
689 1111 0.979665 TTGTCTGGCAAGAGGAGAGG 59.020 55.000 0.00 0.00 31.37 3.69
690 1112 0.115152 TGTCTGGCAAGAGGAGAGGA 59.885 55.000 0.00 0.00 31.37 3.71
691 1113 1.270907 GTCTGGCAAGAGGAGAGGAA 58.729 55.000 0.00 0.00 31.37 3.36
692 1114 1.206849 GTCTGGCAAGAGGAGAGGAAG 59.793 57.143 0.00 0.00 31.37 3.46
693 1115 1.077828 TCTGGCAAGAGGAGAGGAAGA 59.922 52.381 0.00 0.00 0.00 2.87
694 1116 1.206849 CTGGCAAGAGGAGAGGAAGAC 59.793 57.143 0.00 0.00 0.00 3.01
695 1117 0.174617 GGCAAGAGGAGAGGAAGACG 59.825 60.000 0.00 0.00 0.00 4.18
696 1118 0.174617 GCAAGAGGAGAGGAAGACGG 59.825 60.000 0.00 0.00 0.00 4.79
697 1119 0.820871 CAAGAGGAGAGGAAGACGGG 59.179 60.000 0.00 0.00 0.00 5.28
698 1120 0.410270 AAGAGGAGAGGAAGACGGGT 59.590 55.000 0.00 0.00 0.00 5.28
699 1121 0.410270 AGAGGAGAGGAAGACGGGTT 59.590 55.000 0.00 0.00 0.00 4.11
700 1122 0.533032 GAGGAGAGGAAGACGGGTTG 59.467 60.000 0.00 0.00 0.00 3.77
701 1123 0.178929 AGGAGAGGAAGACGGGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
702 1124 1.076677 AGGAGAGGAAGACGGGTTGTA 59.923 52.381 0.00 0.00 0.00 2.41
703 1125 1.477295 GGAGAGGAAGACGGGTTGTAG 59.523 57.143 0.00 0.00 0.00 2.74
704 1126 2.444421 GAGAGGAAGACGGGTTGTAGA 58.556 52.381 0.00 0.00 0.00 2.59
705 1127 2.424246 GAGAGGAAGACGGGTTGTAGAG 59.576 54.545 0.00 0.00 0.00 2.43
706 1128 0.896226 AGGAAGACGGGTTGTAGAGC 59.104 55.000 0.00 0.00 0.00 4.09
707 1129 0.458025 GGAAGACGGGTTGTAGAGCG 60.458 60.000 0.00 0.00 0.00 5.03
708 1130 0.243095 GAAGACGGGTTGTAGAGCGT 59.757 55.000 0.00 0.00 0.00 5.07
709 1131 0.243095 AAGACGGGTTGTAGAGCGTC 59.757 55.000 0.00 0.00 32.97 5.19
710 1132 1.513586 GACGGGTTGTAGAGCGTCG 60.514 63.158 0.00 0.00 0.00 5.12
711 1133 1.915614 GACGGGTTGTAGAGCGTCGA 61.916 60.000 0.00 0.00 0.00 4.20
712 1134 1.210931 CGGGTTGTAGAGCGTCGAA 59.789 57.895 0.00 0.00 0.00 3.71
713 1135 1.069378 CGGGTTGTAGAGCGTCGAAC 61.069 60.000 0.00 0.00 0.00 3.95
714 1136 1.069378 GGGTTGTAGAGCGTCGAACG 61.069 60.000 0.00 0.00 45.88 3.95
715 1137 1.069378 GGTTGTAGAGCGTCGAACGG 61.069 60.000 0.00 0.00 42.82 4.44
716 1138 1.443194 TTGTAGAGCGTCGAACGGC 60.443 57.895 0.00 3.33 42.82 5.68
717 1139 2.578981 GTAGAGCGTCGAACGGCC 60.579 66.667 0.00 0.00 42.82 6.13
718 1140 3.818787 TAGAGCGTCGAACGGCCC 61.819 66.667 0.00 0.00 42.82 5.80
732 1154 4.819761 GCCCTGTGCGCGAGATCA 62.820 66.667 12.10 0.00 0.00 2.92
733 1155 2.584418 CCCTGTGCGCGAGATCAG 60.584 66.667 12.10 11.56 34.70 2.90
734 1156 2.491621 CCTGTGCGCGAGATCAGA 59.508 61.111 12.10 0.00 36.14 3.27
735 1157 1.875813 CCTGTGCGCGAGATCAGAC 60.876 63.158 12.10 0.00 36.14 3.51
736 1158 2.202479 TGTGCGCGAGATCAGACG 60.202 61.111 12.10 0.00 0.00 4.18
737 1159 2.100410 GTGCGCGAGATCAGACGA 59.900 61.111 12.10 0.00 0.00 4.20
738 1160 2.100410 TGCGCGAGATCAGACGAC 59.900 61.111 12.10 0.00 0.00 4.34
739 1161 2.399356 TGCGCGAGATCAGACGACT 61.399 57.895 12.10 0.00 0.00 4.18
740 1162 1.652930 GCGCGAGATCAGACGACTC 60.653 63.158 12.10 0.00 0.00 3.36
741 1163 1.010574 CGCGAGATCAGACGACTCC 60.011 63.158 0.00 0.00 0.00 3.85
742 1164 1.357334 GCGAGATCAGACGACTCCC 59.643 63.158 10.25 0.00 0.00 4.30
743 1165 1.644372 CGAGATCAGACGACTCCCG 59.356 63.158 0.00 0.00 45.44 5.14
744 1166 0.810426 CGAGATCAGACGACTCCCGA 60.810 60.000 0.00 0.00 41.76 5.14
745 1167 1.380524 GAGATCAGACGACTCCCGAA 58.619 55.000 0.00 0.00 41.76 4.30
746 1168 1.332375 GAGATCAGACGACTCCCGAAG 59.668 57.143 0.00 0.00 41.76 3.79
747 1169 0.248702 GATCAGACGACTCCCGAAGC 60.249 60.000 0.00 0.00 41.76 3.86
748 1170 1.994507 ATCAGACGACTCCCGAAGCG 61.995 60.000 0.00 0.00 41.76 4.68
768 1190 5.626258 GCGGATAATTTTCTGCAAACATC 57.374 39.130 20.75 0.00 45.51 3.06
769 1191 5.101628 GCGGATAATTTTCTGCAAACATCA 58.898 37.500 20.75 0.00 45.51 3.07
770 1192 5.750067 GCGGATAATTTTCTGCAAACATCAT 59.250 36.000 20.75 0.00 45.51 2.45
771 1193 6.074676 GCGGATAATTTTCTGCAAACATCATC 60.075 38.462 20.75 0.00 45.51 2.92
772 1194 7.198390 CGGATAATTTTCTGCAAACATCATCT 58.802 34.615 0.00 0.00 0.00 2.90
773 1195 7.166970 CGGATAATTTTCTGCAAACATCATCTG 59.833 37.037 0.00 0.00 0.00 2.90
774 1196 7.437267 GGATAATTTTCTGCAAACATCATCTGG 59.563 37.037 0.00 0.00 0.00 3.86
775 1197 5.988310 ATTTTCTGCAAACATCATCTGGA 57.012 34.783 0.00 0.00 0.00 3.86
776 1198 5.988310 TTTTCTGCAAACATCATCTGGAT 57.012 34.783 0.00 0.00 36.39 3.41
789 1211 5.363562 TCATCTGGATGATTTGTAGCAGT 57.636 39.130 8.96 0.00 42.42 4.40
790 1212 5.121105 TCATCTGGATGATTTGTAGCAGTG 58.879 41.667 8.96 0.00 42.42 3.66
791 1213 3.877559 TCTGGATGATTTGTAGCAGTGG 58.122 45.455 0.00 0.00 0.00 4.00
792 1214 2.357009 CTGGATGATTTGTAGCAGTGGC 59.643 50.000 0.00 0.00 41.61 5.01
793 1215 1.678101 GGATGATTTGTAGCAGTGGCC 59.322 52.381 0.00 0.00 42.56 5.36
799 1221 4.830046 TGATTTGTAGCAGTGGCCTTTTTA 59.170 37.500 3.32 0.00 42.56 1.52
815 1237 5.310720 CTTTTTAAGGATAGCGTTTGCCT 57.689 39.130 0.00 0.00 44.31 4.75
816 1238 5.709966 CTTTTTAAGGATAGCGTTTGCCTT 58.290 37.500 9.58 9.58 44.31 4.35
826 1248 6.472486 GGATAGCGTTTGCCTTTTTCTTAATC 59.528 38.462 0.00 0.00 44.31 1.75
846 1268 6.755461 AATCGAGAATTGCGTAATAGAGTG 57.245 37.500 0.00 0.00 0.00 3.51
878 1306 8.939201 ATCAATAAGCAATATAGATCGGTCTG 57.061 34.615 8.91 0.00 35.87 3.51
911 1341 3.228017 TGCGGGTTCGAGTCCACA 61.228 61.111 10.17 2.63 39.00 4.17
982 1414 9.946165 GCGTATGTACATATATATACTTCAGCA 57.054 33.333 18.27 0.00 34.71 4.41
1048 1481 3.027170 GATCCAACCTGCGTGCACG 62.027 63.158 34.01 34.01 43.27 5.34
1087 1529 1.519408 CTTCCGCCGGAAAGAAAGAA 58.481 50.000 20.54 0.00 41.54 2.52
1313 3147 4.988716 TCCCCTCGACCGTGCAGT 62.989 66.667 0.00 0.00 0.00 4.40
1445 3289 1.074423 TTCTCCGAGGACGAGGTGT 59.926 57.895 0.00 0.00 42.66 4.16
2483 5787 2.651382 ACTTCCGCCCAAACTTTACT 57.349 45.000 0.00 0.00 0.00 2.24
2641 5946 0.895530 GACCCTCGACCTCAACATCA 59.104 55.000 0.00 0.00 0.00 3.07
2657 5962 6.003326 TCAACATCAATTGTGTATGTGTCCT 58.997 36.000 10.93 0.00 38.99 3.85
2670 5975 3.088789 TGTGTCCTCTTCTACTCCCTC 57.911 52.381 0.00 0.00 0.00 4.30
2711 6022 9.606631 AGTCATTTTAGAGATTCCAATACAGAC 57.393 33.333 0.00 0.00 0.00 3.51
2713 6024 9.605275 TCATTTTAGAGATTCCAATACAGACTG 57.395 33.333 0.00 0.00 0.00 3.51
2720 6031 3.452755 TCCAATACAGACTGCATACGG 57.547 47.619 1.25 0.22 0.00 4.02
2733 6044 2.419673 TGCATACGGAGCAAAATGAGTG 59.580 45.455 0.00 0.00 39.39 3.51
2741 6052 4.154015 CGGAGCAAAATGAGTGAACATACA 59.846 41.667 0.00 0.00 0.00 2.29
2789 6100 7.883217 TCCGTATGTAGTTCCTATTGAATCTC 58.117 38.462 0.00 0.00 34.90 2.75
2819 6130 5.605488 AGGCTTATATTAGAAACCGAGGGAA 59.395 40.000 0.00 0.00 0.00 3.97
2924 6292 0.472044 TGCACTGCCACTTTAGACCA 59.528 50.000 0.00 0.00 0.00 4.02
2939 6317 7.012894 CACTTTAGACCAACAATGTACTCCAAA 59.987 37.037 0.00 0.00 0.00 3.28
2948 6326 6.259550 ACAATGTACTCCAAAGCATCTTTC 57.740 37.500 0.00 0.00 0.00 2.62
3087 6468 6.399639 TTTTCATGAGGTTAAGGTCAAACC 57.600 37.500 0.00 0.00 45.65 3.27
3092 6473 3.141272 TGAGGTTAAGGTCAAACCCCAAT 59.859 43.478 1.47 0.00 46.33 3.16
3112 6494 3.012934 TGGGGCATTTCCTTAAGCTAC 57.987 47.619 0.00 0.00 34.39 3.58
3138 6520 1.207791 AGAAGGCCTATGACCACCTG 58.792 55.000 5.16 0.00 31.32 4.00
3194 6576 1.677820 GGGGTTCGATGATCGTTGGTT 60.678 52.381 15.06 0.00 41.35 3.67
3199 6581 2.100197 TCGATGATCGTTGGTTCTCCT 58.900 47.619 15.06 0.00 41.35 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.462678 GAGGTCTCGGGGGCAGAC 61.463 72.222 0.00 0.00 39.78 3.51
27 28 0.101759 CAATTTGCTGGCGATGGAGG 59.898 55.000 0.00 0.00 0.00 4.30
139 140 3.968568 TTGCAACAGCAGCGGCAG 61.969 61.111 12.44 5.49 44.61 4.85
162 163 0.463474 GCTGGAGTTGAGGGAGATGC 60.463 60.000 0.00 0.00 0.00 3.91
183 184 1.354506 GCGTGATGAGCTCCATTGC 59.645 57.895 12.15 7.70 35.17 3.56
278 373 0.884704 GAAGCTCCAACGCAACTCCA 60.885 55.000 0.00 0.00 0.00 3.86
281 376 3.642755 CGAAGCTCCAACGCAACT 58.357 55.556 0.00 0.00 0.00 3.16
319 740 1.135083 CGACTACCACGAAGCTCCAAT 60.135 52.381 0.00 0.00 0.00 3.16
331 752 3.697747 CAACCCCGGCGACTACCA 61.698 66.667 9.30 0.00 0.00 3.25
334 755 2.961893 ATTGCAACCCCGGCGACTA 61.962 57.895 9.30 0.00 0.00 2.59
342 763 2.607442 AAGCCCCATTGCAACCCC 60.607 61.111 0.00 0.00 0.00 4.95
343 764 2.981302 GAAGCCCCATTGCAACCC 59.019 61.111 0.00 0.00 0.00 4.11
351 772 1.218316 GACTTCGACGAAGCCCCAT 59.782 57.895 32.02 16.11 42.79 4.00
354 775 3.179939 GCGACTTCGACGAAGCCC 61.180 66.667 32.02 23.42 42.79 5.19
355 776 3.179939 GGCGACTTCGACGAAGCC 61.180 66.667 32.02 25.60 42.79 4.35
371 792 1.821216 AACTCCAATGTAGCAACCGG 58.179 50.000 0.00 0.00 0.00 5.28
380 801 1.072331 ACTCCAGCGAAACTCCAATGT 59.928 47.619 0.00 0.00 0.00 2.71
395 816 2.425592 CAGCAACCGGTGACTCCA 59.574 61.111 8.52 0.00 43.56 3.86
402 823 1.973281 CTCCAATGCAGCAACCGGT 60.973 57.895 0.00 0.00 0.00 5.28
403 824 2.879907 CTCCAATGCAGCAACCGG 59.120 61.111 0.00 0.00 0.00 5.28
432 854 2.130821 TTGCCAGCCACCGTATCCAA 62.131 55.000 0.00 0.00 0.00 3.53
472 894 2.848679 TGCTCCTCACTGGCCACA 60.849 61.111 0.00 0.00 35.26 4.17
473 895 2.046507 CTGCTCCTCACTGGCCAC 60.047 66.667 0.00 0.00 35.26 5.01
474 896 2.203832 TCTGCTCCTCACTGGCCA 60.204 61.111 4.71 4.71 35.26 5.36
475 897 2.583520 CTCTGCTCCTCACTGGCC 59.416 66.667 0.00 0.00 35.26 5.36
476 898 2.125188 GCTCTGCTCCTCACTGGC 60.125 66.667 0.00 0.00 35.26 4.85
477 899 2.241479 CTGGCTCTGCTCCTCACTGG 62.241 65.000 0.00 0.00 37.10 4.00
478 900 1.218585 CTGGCTCTGCTCCTCACTG 59.781 63.158 0.00 0.00 0.00 3.66
479 901 1.229145 ACTGGCTCTGCTCCTCACT 60.229 57.895 0.00 0.00 0.00 3.41
480 902 1.079266 CACTGGCTCTGCTCCTCAC 60.079 63.158 0.00 0.00 0.00 3.51
481 903 2.952293 GCACTGGCTCTGCTCCTCA 61.952 63.158 0.36 0.00 36.96 3.86
482 904 2.125188 GCACTGGCTCTGCTCCTC 60.125 66.667 0.36 0.00 36.96 3.71
492 914 3.200593 CTCCATCGCAGCACTGGC 61.201 66.667 5.50 0.00 41.61 4.85
493 915 0.463295 ATTCTCCATCGCAGCACTGG 60.463 55.000 4.14 4.14 0.00 4.00
494 916 0.935898 GATTCTCCATCGCAGCACTG 59.064 55.000 0.00 0.00 0.00 3.66
495 917 0.538584 TGATTCTCCATCGCAGCACT 59.461 50.000 0.00 0.00 34.08 4.40
496 918 1.263484 CATGATTCTCCATCGCAGCAC 59.737 52.381 0.00 0.00 34.08 4.40
497 919 1.589803 CATGATTCTCCATCGCAGCA 58.410 50.000 0.00 0.00 34.08 4.41
498 920 0.873054 CCATGATTCTCCATCGCAGC 59.127 55.000 0.00 0.00 34.08 5.25
499 921 2.414806 CTCCATGATTCTCCATCGCAG 58.585 52.381 0.00 0.00 34.08 5.18
500 922 1.071228 CCTCCATGATTCTCCATCGCA 59.929 52.381 0.00 0.00 34.08 5.10
501 923 1.071385 ACCTCCATGATTCTCCATCGC 59.929 52.381 0.00 0.00 34.08 4.58
502 924 2.608998 CGACCTCCATGATTCTCCATCG 60.609 54.545 0.00 0.00 34.08 3.84
503 925 2.366916 ACGACCTCCATGATTCTCCATC 59.633 50.000 0.00 0.00 0.00 3.51
504 926 2.366916 GACGACCTCCATGATTCTCCAT 59.633 50.000 0.00 0.00 0.00 3.41
505 927 1.757118 GACGACCTCCATGATTCTCCA 59.243 52.381 0.00 0.00 0.00 3.86
506 928 2.035632 AGACGACCTCCATGATTCTCC 58.964 52.381 0.00 0.00 0.00 3.71
507 929 2.428890 ACAGACGACCTCCATGATTCTC 59.571 50.000 0.00 0.00 0.00 2.87
508 930 2.167281 CACAGACGACCTCCATGATTCT 59.833 50.000 0.00 0.00 0.00 2.40
509 931 2.544685 CACAGACGACCTCCATGATTC 58.455 52.381 0.00 0.00 0.00 2.52
510 932 1.406069 GCACAGACGACCTCCATGATT 60.406 52.381 0.00 0.00 0.00 2.57
511 933 0.176680 GCACAGACGACCTCCATGAT 59.823 55.000 0.00 0.00 0.00 2.45
512 934 0.900182 AGCACAGACGACCTCCATGA 60.900 55.000 0.00 0.00 0.00 3.07
513 935 0.738762 CAGCACAGACGACCTCCATG 60.739 60.000 0.00 0.00 0.00 3.66
514 936 1.593787 CAGCACAGACGACCTCCAT 59.406 57.895 0.00 0.00 0.00 3.41
515 937 3.051210 CAGCACAGACGACCTCCA 58.949 61.111 0.00 0.00 0.00 3.86
516 938 2.433318 GCAGCACAGACGACCTCC 60.433 66.667 0.00 0.00 0.00 4.30
517 939 2.433318 GGCAGCACAGACGACCTC 60.433 66.667 0.00 0.00 0.00 3.85
518 940 2.587247 ATGGCAGCACAGACGACCT 61.587 57.895 0.00 0.00 0.00 3.85
519 941 2.046892 ATGGCAGCACAGACGACC 60.047 61.111 0.00 0.00 0.00 4.79
520 942 2.393768 CCATGGCAGCACAGACGAC 61.394 63.158 0.00 0.00 0.00 4.34
521 943 2.046988 CCATGGCAGCACAGACGA 60.047 61.111 0.00 0.00 0.00 4.20
522 944 2.046988 TCCATGGCAGCACAGACG 60.047 61.111 6.96 0.00 0.00 4.18
523 945 2.404995 GCTCCATGGCAGCACAGAC 61.405 63.158 23.33 3.85 36.82 3.51
524 946 2.045634 GCTCCATGGCAGCACAGA 60.046 61.111 23.33 0.00 36.82 3.41
525 947 2.360726 TGCTCCATGGCAGCACAG 60.361 61.111 25.68 11.92 42.09 3.66
531 953 3.057548 CAACGCTGCTCCATGGCA 61.058 61.111 6.96 1.01 40.15 4.92
532 954 3.818787 CCAACGCTGCTCCATGGC 61.819 66.667 6.96 0.00 0.00 4.40
533 955 3.818787 GCCAACGCTGCTCCATGG 61.819 66.667 4.97 4.97 0.00 3.66
534 956 3.057548 TGCCAACGCTGCTCCATG 61.058 61.111 0.00 0.00 35.36 3.66
535 957 3.058160 GTGCCAACGCTGCTCCAT 61.058 61.111 0.00 0.00 35.36 3.41
536 958 4.254709 AGTGCCAACGCTGCTCCA 62.255 61.111 0.00 0.00 34.61 3.86
537 959 3.730761 CAGTGCCAACGCTGCTCC 61.731 66.667 0.00 0.00 46.66 4.70
551 973 3.367743 CATTGCAGCACCGGCAGT 61.368 61.111 0.00 0.00 43.05 4.40
552 974 4.124351 CCATTGCAGCACCGGCAG 62.124 66.667 0.00 0.00 43.05 4.85
553 975 4.657408 TCCATTGCAGCACCGGCA 62.657 61.111 0.00 0.00 44.61 5.69
554 976 3.818787 CTCCATTGCAGCACCGGC 61.819 66.667 0.00 0.00 41.61 6.13
555 977 3.818787 GCTCCATTGCAGCACCGG 61.819 66.667 0.00 0.00 36.82 5.28
556 978 3.057548 TGCTCCATTGCAGCACCG 61.058 61.111 0.00 0.00 42.09 4.94
560 982 1.354506 GACGATGCTCCATTGCAGC 59.645 57.895 0.00 0.00 46.71 5.25
561 983 1.640069 CGACGATGCTCCATTGCAG 59.360 57.895 0.00 0.00 46.71 4.41
563 985 1.815421 ACCGACGATGCTCCATTGC 60.815 57.895 0.00 0.00 0.00 3.56
564 986 2.009108 CACCGACGATGCTCCATTG 58.991 57.895 0.00 0.00 0.00 2.82
565 987 1.815421 GCACCGACGATGCTCCATT 60.815 57.895 7.03 0.00 40.08 3.16
566 988 2.202932 GCACCGACGATGCTCCAT 60.203 61.111 7.03 0.00 40.08 3.41
567 989 4.451150 GGCACCGACGATGCTCCA 62.451 66.667 15.07 0.00 42.93 3.86
583 1005 3.047877 GAAGAACCACACCGGCGG 61.048 66.667 27.06 27.06 39.03 6.13
584 1006 3.411351 CGAAGAACCACACCGGCG 61.411 66.667 0.00 0.00 39.03 6.46
585 1007 2.280592 ACGAAGAACCACACCGGC 60.281 61.111 0.00 0.00 39.03 6.13
586 1008 0.812412 AACACGAAGAACCACACCGG 60.812 55.000 0.00 0.00 42.50 5.28
587 1009 0.303493 CAACACGAAGAACCACACCG 59.697 55.000 0.00 0.00 0.00 4.94
588 1010 1.063469 CACAACACGAAGAACCACACC 59.937 52.381 0.00 0.00 0.00 4.16
589 1011 2.004017 TCACAACACGAAGAACCACAC 58.996 47.619 0.00 0.00 0.00 3.82
590 1012 2.388310 TCACAACACGAAGAACCACA 57.612 45.000 0.00 0.00 0.00 4.17
591 1013 2.602217 GCATCACAACACGAAGAACCAC 60.602 50.000 0.00 0.00 0.00 4.16
592 1014 1.601903 GCATCACAACACGAAGAACCA 59.398 47.619 0.00 0.00 0.00 3.67
593 1015 1.601903 TGCATCACAACACGAAGAACC 59.398 47.619 0.00 0.00 0.00 3.62
594 1016 2.908634 CTGCATCACAACACGAAGAAC 58.091 47.619 0.00 0.00 0.00 3.01
595 1017 1.264020 GCTGCATCACAACACGAAGAA 59.736 47.619 0.00 0.00 0.00 2.52
596 1018 0.867746 GCTGCATCACAACACGAAGA 59.132 50.000 0.00 0.00 0.00 2.87
597 1019 0.587768 TGCTGCATCACAACACGAAG 59.412 50.000 0.00 0.00 0.00 3.79
598 1020 1.237533 ATGCTGCATCACAACACGAA 58.762 45.000 9.81 0.00 0.00 3.85
599 1021 2.001872 CTATGCTGCATCACAACACGA 58.998 47.619 19.90 0.00 0.00 4.35
600 1022 1.530441 GCTATGCTGCATCACAACACG 60.530 52.381 19.90 0.35 0.00 4.49
601 1023 1.202222 GGCTATGCTGCATCACAACAC 60.202 52.381 19.90 2.04 34.04 3.32
602 1024 1.097232 GGCTATGCTGCATCACAACA 58.903 50.000 19.90 0.00 34.04 3.33
603 1025 1.065102 CTGGCTATGCTGCATCACAAC 59.935 52.381 19.90 7.04 34.04 3.32
604 1026 1.385528 CTGGCTATGCTGCATCACAA 58.614 50.000 19.90 5.08 34.04 3.33
605 1027 0.464916 CCTGGCTATGCTGCATCACA 60.465 55.000 19.90 14.75 34.04 3.58
606 1028 1.170919 CCCTGGCTATGCTGCATCAC 61.171 60.000 19.90 12.06 34.04 3.06
607 1029 1.149854 CCCTGGCTATGCTGCATCA 59.850 57.895 19.90 10.24 34.04 3.07
608 1030 1.602888 CCCCTGGCTATGCTGCATC 60.603 63.158 19.90 5.54 34.04 3.91
609 1031 2.519441 CCCCTGGCTATGCTGCAT 59.481 61.111 20.18 20.18 34.04 3.96
610 1032 4.511246 GCCCCTGGCTATGCTGCA 62.511 66.667 4.13 4.13 46.69 4.41
622 1044 4.753662 TAGCACCTCGACGCCCCT 62.754 66.667 0.00 0.00 0.00 4.79
623 1045 4.509737 GTAGCACCTCGACGCCCC 62.510 72.222 0.00 0.00 0.00 5.80
624 1046 3.701604 CTGTAGCACCTCGACGCCC 62.702 68.421 0.00 0.00 0.00 6.13
625 1047 2.202623 CTGTAGCACCTCGACGCC 60.203 66.667 0.00 0.00 0.00 5.68
626 1048 1.226435 CTCTGTAGCACCTCGACGC 60.226 63.158 0.00 0.00 0.00 5.19
627 1049 0.375454 CTCTCTGTAGCACCTCGACG 59.625 60.000 0.00 0.00 0.00 5.12
628 1050 1.399089 GTCTCTCTGTAGCACCTCGAC 59.601 57.143 0.00 0.00 0.00 4.20
629 1051 1.003233 TGTCTCTCTGTAGCACCTCGA 59.997 52.381 0.00 0.00 0.00 4.04
630 1052 1.454201 TGTCTCTCTGTAGCACCTCG 58.546 55.000 0.00 0.00 0.00 4.63
631 1053 2.165437 CCTTGTCTCTCTGTAGCACCTC 59.835 54.545 0.00 0.00 0.00 3.85
632 1054 2.175202 CCTTGTCTCTCTGTAGCACCT 58.825 52.381 0.00 0.00 0.00 4.00
633 1055 1.896465 ACCTTGTCTCTCTGTAGCACC 59.104 52.381 0.00 0.00 0.00 5.01
634 1056 2.414824 CGACCTTGTCTCTCTGTAGCAC 60.415 54.545 0.00 0.00 0.00 4.40
635 1057 1.813178 CGACCTTGTCTCTCTGTAGCA 59.187 52.381 0.00 0.00 0.00 3.49
636 1058 1.133407 CCGACCTTGTCTCTCTGTAGC 59.867 57.143 0.00 0.00 0.00 3.58
637 1059 1.746220 CCCGACCTTGTCTCTCTGTAG 59.254 57.143 0.00 0.00 0.00 2.74
638 1060 1.616187 CCCCGACCTTGTCTCTCTGTA 60.616 57.143 0.00 0.00 0.00 2.74
639 1061 0.900647 CCCCGACCTTGTCTCTCTGT 60.901 60.000 0.00 0.00 0.00 3.41
640 1062 1.608717 CCCCCGACCTTGTCTCTCTG 61.609 65.000 0.00 0.00 0.00 3.35
641 1063 1.305381 CCCCCGACCTTGTCTCTCT 60.305 63.158 0.00 0.00 0.00 3.10
642 1064 3.300013 CCCCCGACCTTGTCTCTC 58.700 66.667 0.00 0.00 0.00 3.20
656 1078 0.698818 AGACAACCATGAGAACCCCC 59.301 55.000 0.00 0.00 0.00 5.40
657 1079 1.614317 CCAGACAACCATGAGAACCCC 60.614 57.143 0.00 0.00 0.00 4.95
658 1080 1.826385 CCAGACAACCATGAGAACCC 58.174 55.000 0.00 0.00 0.00 4.11
659 1081 1.168714 GCCAGACAACCATGAGAACC 58.831 55.000 0.00 0.00 0.00 3.62
660 1082 1.896220 TGCCAGACAACCATGAGAAC 58.104 50.000 0.00 0.00 0.00 3.01
661 1083 2.106338 TCTTGCCAGACAACCATGAGAA 59.894 45.455 0.00 0.00 33.68 2.87
662 1084 1.699083 TCTTGCCAGACAACCATGAGA 59.301 47.619 0.00 0.00 33.68 3.27
663 1085 2.082231 CTCTTGCCAGACAACCATGAG 58.918 52.381 0.00 0.00 33.68 2.90
664 1086 1.271543 CCTCTTGCCAGACAACCATGA 60.272 52.381 0.00 0.00 33.68 3.07
665 1087 1.171308 CCTCTTGCCAGACAACCATG 58.829 55.000 0.00 0.00 33.68 3.66
666 1088 1.004044 CTCCTCTTGCCAGACAACCAT 59.996 52.381 0.00 0.00 33.68 3.55
667 1089 0.397941 CTCCTCTTGCCAGACAACCA 59.602 55.000 0.00 0.00 33.68 3.67
668 1090 0.687354 TCTCCTCTTGCCAGACAACC 59.313 55.000 0.00 0.00 33.68 3.77
669 1091 1.338579 CCTCTCCTCTTGCCAGACAAC 60.339 57.143 0.00 0.00 33.68 3.32
670 1092 0.979665 CCTCTCCTCTTGCCAGACAA 59.020 55.000 0.00 0.00 36.62 3.18
671 1093 0.115152 TCCTCTCCTCTTGCCAGACA 59.885 55.000 0.00 0.00 0.00 3.41
672 1094 1.206849 CTTCCTCTCCTCTTGCCAGAC 59.793 57.143 0.00 0.00 0.00 3.51
673 1095 1.077828 TCTTCCTCTCCTCTTGCCAGA 59.922 52.381 0.00 0.00 0.00 3.86
674 1096 1.206849 GTCTTCCTCTCCTCTTGCCAG 59.793 57.143 0.00 0.00 0.00 4.85
675 1097 1.270907 GTCTTCCTCTCCTCTTGCCA 58.729 55.000 0.00 0.00 0.00 4.92
676 1098 0.174617 CGTCTTCCTCTCCTCTTGCC 59.825 60.000 0.00 0.00 0.00 4.52
677 1099 0.174617 CCGTCTTCCTCTCCTCTTGC 59.825 60.000 0.00 0.00 0.00 4.01
678 1100 0.820871 CCCGTCTTCCTCTCCTCTTG 59.179 60.000 0.00 0.00 0.00 3.02
679 1101 0.410270 ACCCGTCTTCCTCTCCTCTT 59.590 55.000 0.00 0.00 0.00 2.85
680 1102 0.410270 AACCCGTCTTCCTCTCCTCT 59.590 55.000 0.00 0.00 0.00 3.69
681 1103 0.533032 CAACCCGTCTTCCTCTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
682 1104 0.178929 ACAACCCGTCTTCCTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
683 1105 1.477295 CTACAACCCGTCTTCCTCTCC 59.523 57.143 0.00 0.00 0.00 3.71
684 1106 2.424246 CTCTACAACCCGTCTTCCTCTC 59.576 54.545 0.00 0.00 0.00 3.20
685 1107 2.448453 CTCTACAACCCGTCTTCCTCT 58.552 52.381 0.00 0.00 0.00 3.69
686 1108 1.135053 GCTCTACAACCCGTCTTCCTC 60.135 57.143 0.00 0.00 0.00 3.71
687 1109 0.896226 GCTCTACAACCCGTCTTCCT 59.104 55.000 0.00 0.00 0.00 3.36
688 1110 0.458025 CGCTCTACAACCCGTCTTCC 60.458 60.000 0.00 0.00 0.00 3.46
689 1111 0.243095 ACGCTCTACAACCCGTCTTC 59.757 55.000 0.00 0.00 0.00 2.87
690 1112 0.243095 GACGCTCTACAACCCGTCTT 59.757 55.000 4.95 0.00 44.64 3.01
691 1113 1.881602 GACGCTCTACAACCCGTCT 59.118 57.895 4.95 0.00 44.64 4.18
692 1114 1.513586 CGACGCTCTACAACCCGTC 60.514 63.158 0.00 0.00 44.61 4.79
693 1115 1.518056 TTCGACGCTCTACAACCCGT 61.518 55.000 0.00 0.00 36.53 5.28
694 1116 1.069378 GTTCGACGCTCTACAACCCG 61.069 60.000 0.00 0.00 0.00 5.28
695 1117 1.069378 CGTTCGACGCTCTACAACCC 61.069 60.000 0.00 0.00 33.65 4.11
696 1118 1.069378 CCGTTCGACGCTCTACAACC 61.069 60.000 0.00 0.00 40.91 3.77
697 1119 1.671880 GCCGTTCGACGCTCTACAAC 61.672 60.000 0.00 0.00 40.91 3.32
698 1120 1.443194 GCCGTTCGACGCTCTACAA 60.443 57.895 0.00 0.00 40.91 2.41
699 1121 2.177531 GCCGTTCGACGCTCTACA 59.822 61.111 0.00 0.00 40.91 2.74
700 1122 2.578981 GGCCGTTCGACGCTCTAC 60.579 66.667 0.00 0.00 40.91 2.59
701 1123 3.818787 GGGCCGTTCGACGCTCTA 61.819 66.667 0.00 0.00 40.91 2.43
715 1137 4.819761 TGATCTCGCGCACAGGGC 62.820 66.667 8.75 0.00 38.15 5.19
716 1138 2.584418 CTGATCTCGCGCACAGGG 60.584 66.667 8.75 0.00 0.00 4.45
717 1139 1.875813 GTCTGATCTCGCGCACAGG 60.876 63.158 8.75 0.00 0.00 4.00
718 1140 2.220224 CGTCTGATCTCGCGCACAG 61.220 63.158 8.75 8.22 0.00 3.66
719 1141 2.202479 CGTCTGATCTCGCGCACA 60.202 61.111 8.75 0.00 0.00 4.57
720 1142 2.100410 TCGTCTGATCTCGCGCAC 59.900 61.111 8.75 0.00 0.00 5.34
721 1143 2.100410 GTCGTCTGATCTCGCGCA 59.900 61.111 8.75 0.00 0.00 6.09
722 1144 1.652930 GAGTCGTCTGATCTCGCGC 60.653 63.158 0.00 0.00 0.00 6.86
723 1145 1.010574 GGAGTCGTCTGATCTCGCG 60.011 63.158 0.00 0.00 0.00 5.87
724 1146 1.357334 GGGAGTCGTCTGATCTCGC 59.643 63.158 0.00 8.02 34.94 5.03
725 1147 0.810426 TCGGGAGTCGTCTGATCTCG 60.810 60.000 0.00 0.00 40.32 4.04
726 1148 1.332375 CTTCGGGAGTCGTCTGATCTC 59.668 57.143 0.00 0.00 40.32 2.75
727 1149 1.384525 CTTCGGGAGTCGTCTGATCT 58.615 55.000 0.00 0.00 40.32 2.75
728 1150 0.248702 GCTTCGGGAGTCGTCTGATC 60.249 60.000 0.00 0.00 40.32 2.92
729 1151 1.810532 GCTTCGGGAGTCGTCTGAT 59.189 57.895 0.00 0.00 40.32 2.90
730 1152 2.687805 CGCTTCGGGAGTCGTCTGA 61.688 63.158 0.00 0.00 40.32 3.27
731 1153 2.202492 CGCTTCGGGAGTCGTCTG 60.202 66.667 0.00 0.00 40.32 3.51
732 1154 3.441290 CCGCTTCGGGAGTCGTCT 61.441 66.667 0.00 0.00 44.15 4.18
742 1164 3.673746 TGCAGAAAATTATCCGCTTCG 57.326 42.857 0.00 0.00 0.00 3.79
743 1165 5.160641 TGTTTGCAGAAAATTATCCGCTTC 58.839 37.500 0.00 0.00 0.00 3.86
744 1166 5.132897 TGTTTGCAGAAAATTATCCGCTT 57.867 34.783 0.00 0.00 0.00 4.68
745 1167 4.782019 TGTTTGCAGAAAATTATCCGCT 57.218 36.364 0.00 0.00 0.00 5.52
746 1168 5.101628 TGATGTTTGCAGAAAATTATCCGC 58.898 37.500 0.00 0.00 0.00 5.54
747 1169 7.166970 CAGATGATGTTTGCAGAAAATTATCCG 59.833 37.037 10.32 2.01 0.00 4.18
748 1170 7.437267 CCAGATGATGTTTGCAGAAAATTATCC 59.563 37.037 10.32 0.00 0.00 2.59
749 1171 8.192774 TCCAGATGATGTTTGCAGAAAATTATC 58.807 33.333 7.73 7.73 0.00 1.75
750 1172 8.070034 TCCAGATGATGTTTGCAGAAAATTAT 57.930 30.769 0.00 0.00 0.00 1.28
751 1173 7.465353 TCCAGATGATGTTTGCAGAAAATTA 57.535 32.000 0.00 0.00 0.00 1.40
752 1174 6.349243 TCCAGATGATGTTTGCAGAAAATT 57.651 33.333 0.00 0.00 0.00 1.82
753 1175 5.988310 TCCAGATGATGTTTGCAGAAAAT 57.012 34.783 0.00 0.00 0.00 1.82
754 1176 5.716094 CATCCAGATGATGTTTGCAGAAAA 58.284 37.500 1.16 0.00 44.91 2.29
755 1177 5.319140 CATCCAGATGATGTTTGCAGAAA 57.681 39.130 1.16 0.00 44.91 2.52
756 1178 4.976224 CATCCAGATGATGTTTGCAGAA 57.024 40.909 1.16 0.00 44.91 3.02
768 1190 4.275196 CCACTGCTACAAATCATCCAGATG 59.725 45.833 0.98 0.98 36.96 2.90
769 1191 4.458397 CCACTGCTACAAATCATCCAGAT 58.542 43.478 0.00 0.00 39.09 2.90
770 1192 3.877559 CCACTGCTACAAATCATCCAGA 58.122 45.455 0.00 0.00 0.00 3.86
771 1193 2.357009 GCCACTGCTACAAATCATCCAG 59.643 50.000 0.00 0.00 33.53 3.86
772 1194 2.368439 GCCACTGCTACAAATCATCCA 58.632 47.619 0.00 0.00 33.53 3.41
773 1195 1.678101 GGCCACTGCTACAAATCATCC 59.322 52.381 0.00 0.00 37.74 3.51
774 1196 2.648059 AGGCCACTGCTACAAATCATC 58.352 47.619 5.01 0.00 37.74 2.92
775 1197 2.814805 AGGCCACTGCTACAAATCAT 57.185 45.000 5.01 0.00 37.74 2.45
776 1198 2.584835 AAGGCCACTGCTACAAATCA 57.415 45.000 5.01 0.00 37.74 2.57
777 1199 3.942130 AAAAGGCCACTGCTACAAATC 57.058 42.857 5.01 0.00 37.74 2.17
778 1200 5.279456 CCTTAAAAAGGCCACTGCTACAAAT 60.279 40.000 5.01 0.00 42.78 2.32
779 1201 4.038642 CCTTAAAAAGGCCACTGCTACAAA 59.961 41.667 5.01 0.00 42.78 2.83
780 1202 3.572255 CCTTAAAAAGGCCACTGCTACAA 59.428 43.478 5.01 0.00 42.78 2.41
781 1203 3.153919 CCTTAAAAAGGCCACTGCTACA 58.846 45.455 5.01 0.00 42.78 2.74
782 1204 3.850122 CCTTAAAAAGGCCACTGCTAC 57.150 47.619 5.01 0.00 42.78 3.58
793 1215 5.310720 AGGCAAACGCTATCCTTAAAAAG 57.689 39.130 0.00 0.00 0.00 2.27
799 1221 3.826729 AGAAAAAGGCAAACGCTATCCTT 59.173 39.130 0.00 0.00 40.39 3.36
811 1233 6.092748 GCAATTCTCGATTAAGAAAAAGGCA 58.907 36.000 0.00 0.00 38.69 4.75
812 1234 5.228012 CGCAATTCTCGATTAAGAAAAAGGC 59.772 40.000 0.00 0.00 38.69 4.35
826 1248 4.607955 TCCACTCTATTACGCAATTCTCG 58.392 43.478 0.00 0.00 0.00 4.04
889 1317 3.644399 GACTCGAACCCGCACTCCC 62.644 68.421 0.00 0.00 35.37 4.30
896 1324 1.666872 GGTTGTGGACTCGAACCCG 60.667 63.158 5.96 0.00 34.21 5.28
980 1412 1.641577 GAGGTGGAGATACAACGTGC 58.358 55.000 0.00 0.00 31.99 5.34
982 1414 1.192428 GGGAGGTGGAGATACAACGT 58.808 55.000 0.00 0.00 31.99 3.99
1445 3289 1.820906 GCTGCTTCATGATCCGGCA 60.821 57.895 17.40 14.13 0.00 5.69
1954 3804 0.181587 TGGGAAACTTGTGCCGAAGA 59.818 50.000 0.00 0.00 0.00 2.87
2469 5773 2.032426 ACGTTTGAGTAAAGTTTGGGCG 59.968 45.455 0.00 0.00 0.00 6.13
2483 5787 2.405594 GTGGTTGCGCACGTTTGA 59.594 55.556 11.12 0.00 0.00 2.69
2621 5926 0.179134 GATGTTGAGGTCGAGGGTCG 60.179 60.000 0.00 0.00 42.10 4.79
2641 5946 7.246171 AGTAGAAGAGGACACATACACAATT 57.754 36.000 0.00 0.00 0.00 2.32
2657 5962 5.531753 TTAGGAACAGAGGGAGTAGAAGA 57.468 43.478 0.00 0.00 0.00 2.87
2697 6008 4.449068 CCGTATGCAGTCTGTATTGGAATC 59.551 45.833 8.84 0.00 0.00 2.52
2709 6020 2.677836 TCATTTTGCTCCGTATGCAGTC 59.322 45.455 0.00 0.00 41.71 3.51
2711 6022 2.679837 ACTCATTTTGCTCCGTATGCAG 59.320 45.455 0.00 0.00 41.71 4.41
2713 6024 2.677836 TCACTCATTTTGCTCCGTATGC 59.322 45.455 0.00 0.00 0.00 3.14
2720 6031 6.246420 AGTGTATGTTCACTCATTTTGCTC 57.754 37.500 0.00 0.00 44.07 4.26
2819 6130 7.196637 ACCCTCCTTTCGAATTCTTTACTAT 57.803 36.000 0.00 0.00 0.00 2.12
2852 6163 1.468054 GCATCAATCGGTGTCAAAGCC 60.468 52.381 0.00 0.00 0.00 4.35
2854 6165 2.725759 CGTGCATCAATCGGTGTCAAAG 60.726 50.000 0.00 0.00 0.00 2.77
2855 6166 1.196581 CGTGCATCAATCGGTGTCAAA 59.803 47.619 0.00 0.00 0.00 2.69
2858 6169 1.060937 GCGTGCATCAATCGGTGTC 59.939 57.895 0.00 0.00 0.00 3.67
2900 6212 5.163205 TGGTCTAAAGTGGCAGTGCATATAT 60.163 40.000 18.61 2.26 0.00 0.86
2924 6292 6.294731 GGAAAGATGCTTTGGAGTACATTGTT 60.295 38.462 0.00 0.00 0.00 2.83
2939 6317 3.679389 CACACACCTTAGGAAAGATGCT 58.321 45.455 4.77 0.00 27.89 3.79
2948 6326 1.006571 ACGTCGCACACACCTTAGG 60.007 57.895 0.00 0.00 0.00 2.69
3092 6473 2.310349 TGTAGCTTAAGGAAATGCCCCA 59.690 45.455 4.29 0.00 37.37 4.96
3112 6494 5.059833 GTGGTCATAGGCCTTCTAGAAATG 58.940 45.833 12.58 6.86 0.00 2.32
3138 6520 0.727398 CGCGGAGAAAGGACAAATCC 59.273 55.000 0.00 0.00 46.69 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.