Multiple sequence alignment - TraesCS7D01G311500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G311500 chr7D 100.000 3521 0 0 1 3521 394940145 394943665 0.000000e+00 6503.0
1 TraesCS7D01G311500 chr7D 82.530 166 14 6 3359 3520 154641647 154641493 7.930000e-27 132.0
2 TraesCS7D01G311500 chr7A 92.215 2312 105 35 618 2867 448190832 448193130 0.000000e+00 3203.0
3 TraesCS7D01G311500 chr7A 95.516 446 15 5 2870 3311 448193420 448193864 0.000000e+00 708.0
4 TraesCS7D01G311500 chr7A 91.304 46 4 0 548 593 714673814 714673859 2.930000e-06 63.9
5 TraesCS7D01G311500 chr7B 93.006 1587 53 24 598 2151 394763176 394764737 0.000000e+00 2263.0
6 TraesCS7D01G311500 chr7B 91.968 996 39 17 2147 3103 394766590 394767583 0.000000e+00 1358.0
7 TraesCS7D01G311500 chr7B 93.536 263 16 1 3088 3349 394767612 394767874 1.190000e-104 390.0
8 TraesCS7D01G311500 chr5B 81.529 157 17 5 3368 3520 367937673 367937821 6.170000e-23 119.0
9 TraesCS7D01G311500 chr5B 87.755 49 4 2 549 596 550161117 550161070 4.910000e-04 56.5
10 TraesCS7D01G311500 chr2B 95.122 41 2 0 552 592 755584214 755584174 8.160000e-07 65.8
11 TraesCS7D01G311500 chr2B 91.111 45 4 0 548 592 640491337 640491293 1.060000e-05 62.1
12 TraesCS7D01G311500 chr6A 89.796 49 4 1 548 596 33259224 33259271 1.060000e-05 62.1
13 TraesCS7D01G311500 chr5A 92.857 42 3 0 552 593 590678636 590678595 1.060000e-05 62.1
14 TraesCS7D01G311500 chr3A 92.857 42 3 0 548 589 428579304 428579345 1.060000e-05 62.1
15 TraesCS7D01G311500 chr2A 92.857 42 3 0 552 593 720521620 720521661 1.060000e-05 62.1
16 TraesCS7D01G311500 chr4A 89.362 47 5 0 552 598 641003453 641003407 3.800000e-05 60.2
17 TraesCS7D01G311500 chr5D 97.059 34 1 0 1515 1548 88358943 88358910 1.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G311500 chr7D 394940145 394943665 3520 False 6503.0 6503 100.000000 1 3521 1 chr7D.!!$F1 3520
1 TraesCS7D01G311500 chr7A 448190832 448193864 3032 False 1955.5 3203 93.865500 618 3311 2 chr7A.!!$F2 2693
2 TraesCS7D01G311500 chr7B 394763176 394767874 4698 False 1337.0 2263 92.836667 598 3349 3 chr7B.!!$F1 2751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 420 0.034477 CGGGGTTTTAGTGCATCCCT 60.034 55.0 0.0 0.0 38.31 4.20 F
430 431 0.038166 TGCATCCCTTGAAGACACCC 59.962 55.0 0.0 0.0 0.00 4.61 F
431 432 0.329596 GCATCCCTTGAAGACACCCT 59.670 55.0 0.0 0.0 0.00 4.34 F
1729 1770 0.596082 CATGACACGGGGGTTTGTTC 59.404 55.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2363 4275 0.037697 AGTCTGCACGCCAACGATAA 60.038 50.000 0.00 0.0 43.93 1.75 R
2368 4280 2.074547 TTACTAGTCTGCACGCCAAC 57.925 50.000 0.00 0.0 0.00 3.77 R
2414 4332 6.596497 AGAATGGGATTGATGAAACAAAATGC 59.404 34.615 0.00 0.0 33.44 3.56 R
3403 5690 0.172803 GCGACCGGTGTCTTGTCTAT 59.827 55.000 14.63 0.0 39.47 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.220674 TCATGGGTGAATGTGTTGACA 57.779 42.857 0.00 0.00 36.22 3.58
22 23 3.560105 TCATGGGTGAATGTGTTGACAA 58.440 40.909 0.00 0.00 35.11 3.18
23 24 4.151121 TCATGGGTGAATGTGTTGACAAT 58.849 39.130 0.00 0.00 35.11 2.71
24 25 4.022155 TCATGGGTGAATGTGTTGACAATG 60.022 41.667 0.00 0.00 35.11 2.82
25 26 3.295093 TGGGTGAATGTGTTGACAATGT 58.705 40.909 0.00 0.00 35.11 2.71
26 27 3.703556 TGGGTGAATGTGTTGACAATGTT 59.296 39.130 0.00 0.00 35.11 2.71
27 28 4.161189 TGGGTGAATGTGTTGACAATGTTT 59.839 37.500 0.00 0.00 35.11 2.83
28 29 4.507388 GGGTGAATGTGTTGACAATGTTTG 59.493 41.667 0.00 0.00 35.11 2.93
29 30 4.507388 GGTGAATGTGTTGACAATGTTTGG 59.493 41.667 0.00 0.00 35.11 3.28
30 31 4.025813 GTGAATGTGTTGACAATGTTTGGC 60.026 41.667 0.00 0.00 39.85 4.52
31 32 4.141981 TGAATGTGTTGACAATGTTTGGCT 60.142 37.500 0.00 0.00 40.19 4.75
32 33 3.883830 TGTGTTGACAATGTTTGGCTT 57.116 38.095 0.00 0.00 40.19 4.35
33 34 3.779759 TGTGTTGACAATGTTTGGCTTC 58.220 40.909 0.00 0.00 40.19 3.86
34 35 3.194329 TGTGTTGACAATGTTTGGCTTCA 59.806 39.130 0.00 0.00 40.19 3.02
35 36 4.141981 TGTGTTGACAATGTTTGGCTTCAT 60.142 37.500 0.00 0.00 40.19 2.57
36 37 5.068329 TGTGTTGACAATGTTTGGCTTCATA 59.932 36.000 0.00 0.00 40.19 2.15
37 38 6.158598 GTGTTGACAATGTTTGGCTTCATAT 58.841 36.000 0.00 0.00 40.19 1.78
38 39 6.646240 GTGTTGACAATGTTTGGCTTCATATT 59.354 34.615 0.00 0.00 40.19 1.28
39 40 7.171337 GTGTTGACAATGTTTGGCTTCATATTT 59.829 33.333 0.00 0.00 40.19 1.40
40 41 7.171167 TGTTGACAATGTTTGGCTTCATATTTG 59.829 33.333 0.00 0.00 40.19 2.32
41 42 6.757237 TGACAATGTTTGGCTTCATATTTGT 58.243 32.000 0.00 0.00 40.19 2.83
42 43 7.890515 TGACAATGTTTGGCTTCATATTTGTA 58.109 30.769 0.00 0.00 40.19 2.41
43 44 8.363390 TGACAATGTTTGGCTTCATATTTGTAA 58.637 29.630 0.00 0.00 40.19 2.41
44 45 8.532977 ACAATGTTTGGCTTCATATTTGTAAC 57.467 30.769 0.00 0.00 34.12 2.50
45 46 8.367156 ACAATGTTTGGCTTCATATTTGTAACT 58.633 29.630 0.00 0.00 34.12 2.24
46 47 8.649841 CAATGTTTGGCTTCATATTTGTAACTG 58.350 33.333 0.00 0.00 0.00 3.16
47 48 7.517614 TGTTTGGCTTCATATTTGTAACTGA 57.482 32.000 0.00 0.00 0.00 3.41
48 49 7.946207 TGTTTGGCTTCATATTTGTAACTGAA 58.054 30.769 0.00 0.00 0.00 3.02
49 50 8.584157 TGTTTGGCTTCATATTTGTAACTGAAT 58.416 29.630 0.00 0.00 0.00 2.57
50 51 8.863049 GTTTGGCTTCATATTTGTAACTGAATG 58.137 33.333 0.00 0.00 0.00 2.67
51 52 7.701539 TGGCTTCATATTTGTAACTGAATGT 57.298 32.000 0.00 0.00 0.00 2.71
52 53 7.537715 TGGCTTCATATTTGTAACTGAATGTG 58.462 34.615 0.00 0.00 0.00 3.21
53 54 7.176515 TGGCTTCATATTTGTAACTGAATGTGT 59.823 33.333 0.00 0.00 0.00 3.72
54 55 8.673711 GGCTTCATATTTGTAACTGAATGTGTA 58.326 33.333 0.00 0.00 0.00 2.90
55 56 9.490663 GCTTCATATTTGTAACTGAATGTGTAC 57.509 33.333 0.00 0.00 0.00 2.90
62 63 8.590719 TTTGTAACTGAATGTGTACAATACGA 57.409 30.769 0.00 0.00 34.93 3.43
63 64 7.571089 TGTAACTGAATGTGTACAATACGAC 57.429 36.000 0.00 0.00 0.00 4.34
64 65 7.146648 TGTAACTGAATGTGTACAATACGACA 58.853 34.615 0.00 0.00 0.00 4.35
65 66 7.652507 TGTAACTGAATGTGTACAATACGACAA 59.347 33.333 0.00 0.00 0.00 3.18
66 67 7.485418 AACTGAATGTGTACAATACGACAAA 57.515 32.000 0.00 0.00 0.00 2.83
67 68 7.485418 ACTGAATGTGTACAATACGACAAAA 57.515 32.000 0.00 0.00 0.00 2.44
68 69 7.921787 ACTGAATGTGTACAATACGACAAAAA 58.078 30.769 0.00 0.00 0.00 1.94
69 70 8.564574 ACTGAATGTGTACAATACGACAAAAAT 58.435 29.630 0.00 0.00 0.00 1.82
98 99 9.449550 TGAAAAATAATATGCTAGACAAATGCG 57.550 29.630 0.00 0.00 0.00 4.73
99 100 9.663904 GAAAAATAATATGCTAGACAAATGCGA 57.336 29.630 0.00 0.00 0.00 5.10
102 103 9.669353 AAATAATATGCTAGACAAATGCGAAAG 57.331 29.630 0.00 0.00 0.00 2.62
103 104 5.679734 ATATGCTAGACAAATGCGAAAGG 57.320 39.130 0.00 0.00 0.00 3.11
104 105 3.052455 TGCTAGACAAATGCGAAAGGA 57.948 42.857 0.00 0.00 0.00 3.36
105 106 2.742053 TGCTAGACAAATGCGAAAGGAC 59.258 45.455 0.00 0.00 0.00 3.85
106 107 2.742053 GCTAGACAAATGCGAAAGGACA 59.258 45.455 0.00 0.00 0.00 4.02
107 108 3.188460 GCTAGACAAATGCGAAAGGACAA 59.812 43.478 0.00 0.00 0.00 3.18
108 109 4.142600 GCTAGACAAATGCGAAAGGACAAT 60.143 41.667 0.00 0.00 0.00 2.71
109 110 4.425577 AGACAAATGCGAAAGGACAATC 57.574 40.909 0.00 0.00 0.00 2.67
110 111 3.120199 AGACAAATGCGAAAGGACAATCG 60.120 43.478 0.00 0.00 41.81 3.34
111 112 2.811431 ACAAATGCGAAAGGACAATCGA 59.189 40.909 0.00 0.00 41.43 3.59
112 113 3.252215 ACAAATGCGAAAGGACAATCGAA 59.748 39.130 0.00 0.00 41.43 3.71
113 114 3.747099 AATGCGAAAGGACAATCGAAG 57.253 42.857 0.00 0.00 41.43 3.79
114 115 1.438651 TGCGAAAGGACAATCGAAGG 58.561 50.000 0.00 0.00 41.43 3.46
115 116 1.001520 TGCGAAAGGACAATCGAAGGA 59.998 47.619 0.00 0.00 41.43 3.36
116 117 1.393883 GCGAAAGGACAATCGAAGGAC 59.606 52.381 0.00 0.00 41.43 3.85
117 118 1.654105 CGAAAGGACAATCGAAGGACG 59.346 52.381 0.00 0.00 41.43 4.79
118 119 1.393883 GAAAGGACAATCGAAGGACGC 59.606 52.381 0.00 0.00 42.26 5.19
119 120 0.391263 AAGGACAATCGAAGGACGCC 60.391 55.000 0.00 0.00 42.26 5.68
120 121 2.165301 GGACAATCGAAGGACGCCG 61.165 63.158 0.00 0.00 42.26 6.46
121 122 1.445582 GACAATCGAAGGACGCCGT 60.446 57.895 0.00 0.00 42.26 5.68
122 123 0.179156 GACAATCGAAGGACGCCGTA 60.179 55.000 0.00 0.00 42.26 4.02
123 124 0.458669 ACAATCGAAGGACGCCGTAT 59.541 50.000 0.00 0.00 42.26 3.06
124 125 1.134907 ACAATCGAAGGACGCCGTATT 60.135 47.619 0.00 0.00 42.26 1.89
125 126 1.931172 CAATCGAAGGACGCCGTATTT 59.069 47.619 0.00 0.00 42.26 1.40
126 127 3.117794 CAATCGAAGGACGCCGTATTTA 58.882 45.455 0.00 0.00 42.26 1.40
127 128 2.937469 TCGAAGGACGCCGTATTTAA 57.063 45.000 0.00 0.00 42.26 1.52
128 129 2.529151 TCGAAGGACGCCGTATTTAAC 58.471 47.619 0.00 0.00 42.26 2.01
129 130 3.042899 TCGAAGGACGCCGTATTTAACG 61.043 50.000 0.00 0.00 45.14 3.18
140 141 1.131693 GTATTTAACGGGCACACTGGC 59.868 52.381 0.00 0.00 42.88 4.85
141 142 1.582610 ATTTAACGGGCACACTGGCG 61.583 55.000 0.00 0.00 44.78 5.69
156 157 3.959975 GCGCTGCCCACGAACAAA 61.960 61.111 0.00 0.00 0.00 2.83
157 158 2.953821 CGCTGCCCACGAACAAAT 59.046 55.556 0.00 0.00 0.00 2.32
158 159 1.442520 CGCTGCCCACGAACAAATG 60.443 57.895 0.00 0.00 0.00 2.32
159 160 1.851021 CGCTGCCCACGAACAAATGA 61.851 55.000 0.00 0.00 0.00 2.57
160 161 0.527565 GCTGCCCACGAACAAATGAT 59.472 50.000 0.00 0.00 0.00 2.45
161 162 1.742831 GCTGCCCACGAACAAATGATA 59.257 47.619 0.00 0.00 0.00 2.15
162 163 2.223340 GCTGCCCACGAACAAATGATAG 60.223 50.000 0.00 0.00 0.00 2.08
163 164 3.270027 CTGCCCACGAACAAATGATAGA 58.730 45.455 0.00 0.00 0.00 1.98
164 165 3.680490 TGCCCACGAACAAATGATAGAA 58.320 40.909 0.00 0.00 0.00 2.10
165 166 4.075682 TGCCCACGAACAAATGATAGAAA 58.924 39.130 0.00 0.00 0.00 2.52
166 167 4.520874 TGCCCACGAACAAATGATAGAAAA 59.479 37.500 0.00 0.00 0.00 2.29
167 168 5.184864 TGCCCACGAACAAATGATAGAAAAT 59.815 36.000 0.00 0.00 0.00 1.82
168 169 6.099341 GCCCACGAACAAATGATAGAAAATT 58.901 36.000 0.00 0.00 0.00 1.82
169 170 6.034898 GCCCACGAACAAATGATAGAAAATTG 59.965 38.462 0.00 0.00 0.00 2.32
170 171 6.034898 CCCACGAACAAATGATAGAAAATTGC 59.965 38.462 0.00 0.00 0.00 3.56
171 172 6.034898 CCACGAACAAATGATAGAAAATTGCC 59.965 38.462 0.00 0.00 0.00 4.52
172 173 6.585702 CACGAACAAATGATAGAAAATTGCCA 59.414 34.615 0.00 0.00 0.00 4.92
173 174 7.276218 CACGAACAAATGATAGAAAATTGCCAT 59.724 33.333 0.00 0.00 0.00 4.40
174 175 7.818930 ACGAACAAATGATAGAAAATTGCCATT 59.181 29.630 0.00 0.00 0.00 3.16
175 176 8.111836 CGAACAAATGATAGAAAATTGCCATTG 58.888 33.333 0.00 0.00 0.00 2.82
176 177 8.851541 AACAAATGATAGAAAATTGCCATTGT 57.148 26.923 0.00 0.00 0.00 2.71
177 178 8.483307 ACAAATGATAGAAAATTGCCATTGTC 57.517 30.769 0.00 0.00 0.00 3.18
178 179 8.316214 ACAAATGATAGAAAATTGCCATTGTCT 58.684 29.630 8.21 8.21 39.86 3.41
179 180 8.600625 CAAATGATAGAAAATTGCCATTGTCTG 58.399 33.333 12.45 0.00 37.51 3.51
181 182 3.967332 AGAAAATTGCCATTGTCTGGG 57.033 42.857 2.43 0.00 46.06 4.45
182 183 3.242011 AGAAAATTGCCATTGTCTGGGT 58.758 40.909 2.43 0.00 46.06 4.51
183 184 3.259123 AGAAAATTGCCATTGTCTGGGTC 59.741 43.478 2.43 0.00 46.06 4.46
184 185 2.610438 AATTGCCATTGTCTGGGTCT 57.390 45.000 0.00 0.00 46.06 3.85
185 186 2.610438 ATTGCCATTGTCTGGGTCTT 57.390 45.000 0.00 0.00 46.06 3.01
186 187 1.909700 TTGCCATTGTCTGGGTCTTC 58.090 50.000 0.00 0.00 46.06 2.87
187 188 0.038166 TGCCATTGTCTGGGTCTTCC 59.962 55.000 0.00 0.00 46.06 3.46
188 189 0.329596 GCCATTGTCTGGGTCTTCCT 59.670 55.000 0.00 0.00 46.06 3.36
189 190 1.680249 GCCATTGTCTGGGTCTTCCTC 60.680 57.143 0.00 0.00 46.06 3.71
190 191 1.630369 CCATTGTCTGGGTCTTCCTCA 59.370 52.381 0.00 0.00 41.82 3.86
191 192 2.616510 CCATTGTCTGGGTCTTCCTCAC 60.617 54.545 0.00 0.00 41.82 3.51
192 193 2.103153 TTGTCTGGGTCTTCCTCACT 57.897 50.000 0.00 0.00 36.20 3.41
193 194 2.103153 TGTCTGGGTCTTCCTCACTT 57.897 50.000 0.00 0.00 36.20 3.16
194 195 1.971357 TGTCTGGGTCTTCCTCACTTC 59.029 52.381 0.00 0.00 36.20 3.01
195 196 1.971357 GTCTGGGTCTTCCTCACTTCA 59.029 52.381 0.00 0.00 36.20 3.02
196 197 2.569404 GTCTGGGTCTTCCTCACTTCAT 59.431 50.000 0.00 0.00 36.20 2.57
197 198 3.008485 GTCTGGGTCTTCCTCACTTCATT 59.992 47.826 0.00 0.00 36.20 2.57
198 199 4.223032 GTCTGGGTCTTCCTCACTTCATTA 59.777 45.833 0.00 0.00 36.20 1.90
199 200 4.223032 TCTGGGTCTTCCTCACTTCATTAC 59.777 45.833 0.00 0.00 36.20 1.89
200 201 3.907474 TGGGTCTTCCTCACTTCATTACA 59.093 43.478 0.00 0.00 36.20 2.41
201 202 4.349636 TGGGTCTTCCTCACTTCATTACAA 59.650 41.667 0.00 0.00 36.20 2.41
202 203 4.938226 GGGTCTTCCTCACTTCATTACAAG 59.062 45.833 0.00 0.00 0.00 3.16
203 204 4.393371 GGTCTTCCTCACTTCATTACAAGC 59.607 45.833 0.00 0.00 0.00 4.01
204 205 5.241662 GTCTTCCTCACTTCATTACAAGCT 58.758 41.667 0.00 0.00 0.00 3.74
205 206 5.703130 GTCTTCCTCACTTCATTACAAGCTT 59.297 40.000 0.00 0.00 0.00 3.74
206 207 5.934625 TCTTCCTCACTTCATTACAAGCTTC 59.065 40.000 0.00 0.00 0.00 3.86
207 208 5.227569 TCCTCACTTCATTACAAGCTTCA 57.772 39.130 0.00 0.00 0.00 3.02
208 209 5.809001 TCCTCACTTCATTACAAGCTTCAT 58.191 37.500 0.00 0.00 0.00 2.57
209 210 6.240894 TCCTCACTTCATTACAAGCTTCATT 58.759 36.000 0.00 0.00 0.00 2.57
210 211 6.372659 TCCTCACTTCATTACAAGCTTCATTC 59.627 38.462 0.00 0.00 0.00 2.67
211 212 6.149973 CCTCACTTCATTACAAGCTTCATTCA 59.850 38.462 0.00 0.00 0.00 2.57
212 213 7.137490 TCACTTCATTACAAGCTTCATTCAG 57.863 36.000 0.00 0.00 0.00 3.02
213 214 6.712095 TCACTTCATTACAAGCTTCATTCAGT 59.288 34.615 0.00 0.00 0.00 3.41
214 215 7.877612 TCACTTCATTACAAGCTTCATTCAGTA 59.122 33.333 0.00 0.00 0.00 2.74
215 216 8.671921 CACTTCATTACAAGCTTCATTCAGTAT 58.328 33.333 0.00 0.00 0.00 2.12
216 217 8.671921 ACTTCATTACAAGCTTCATTCAGTATG 58.328 33.333 0.00 0.00 35.45 2.39
217 218 8.565896 TTCATTACAAGCTTCATTCAGTATGT 57.434 30.769 0.00 0.00 37.40 2.29
218 219 8.565896 TCATTACAAGCTTCATTCAGTATGTT 57.434 30.769 0.00 0.00 37.40 2.71
219 220 9.013229 TCATTACAAGCTTCATTCAGTATGTTT 57.987 29.630 0.00 0.00 37.40 2.83
222 223 7.744087 ACAAGCTTCATTCAGTATGTTTACA 57.256 32.000 0.00 0.00 37.40 2.41
223 224 8.165239 ACAAGCTTCATTCAGTATGTTTACAA 57.835 30.769 0.00 0.00 37.40 2.41
224 225 8.796475 ACAAGCTTCATTCAGTATGTTTACAAT 58.204 29.630 0.00 0.00 37.40 2.71
225 226 9.630098 CAAGCTTCATTCAGTATGTTTACAATT 57.370 29.630 0.00 0.00 37.40 2.32
275 276 8.984891 TTTCATTGTATTTGGTTATTCTGCTG 57.015 30.769 0.00 0.00 0.00 4.41
276 277 7.936496 TCATTGTATTTGGTTATTCTGCTGA 57.064 32.000 0.00 0.00 0.00 4.26
277 278 7.988737 TCATTGTATTTGGTTATTCTGCTGAG 58.011 34.615 0.00 0.00 0.00 3.35
278 279 6.757897 TTGTATTTGGTTATTCTGCTGAGG 57.242 37.500 0.00 0.00 0.00 3.86
279 280 6.061022 TGTATTTGGTTATTCTGCTGAGGA 57.939 37.500 0.00 0.00 0.00 3.71
280 281 6.662755 TGTATTTGGTTATTCTGCTGAGGAT 58.337 36.000 0.00 0.00 0.00 3.24
281 282 6.767902 TGTATTTGGTTATTCTGCTGAGGATC 59.232 38.462 0.00 0.00 0.00 3.36
283 284 4.142609 TGGTTATTCTGCTGAGGATCAC 57.857 45.455 0.00 0.00 42.56 3.06
284 285 3.519107 TGGTTATTCTGCTGAGGATCACA 59.481 43.478 0.00 0.00 42.56 3.58
285 286 4.164796 TGGTTATTCTGCTGAGGATCACAT 59.835 41.667 0.00 0.00 42.56 3.21
286 287 4.514441 GGTTATTCTGCTGAGGATCACATG 59.486 45.833 0.00 0.00 42.56 3.21
287 288 5.363101 GTTATTCTGCTGAGGATCACATGA 58.637 41.667 0.00 0.00 42.56 3.07
288 289 3.986996 TTCTGCTGAGGATCACATGAA 57.013 42.857 0.00 0.00 42.56 2.57
289 290 3.986996 TCTGCTGAGGATCACATGAAA 57.013 42.857 0.00 0.00 42.56 2.69
290 291 4.290711 TCTGCTGAGGATCACATGAAAA 57.709 40.909 0.00 0.00 42.56 2.29
291 292 4.851843 TCTGCTGAGGATCACATGAAAAT 58.148 39.130 0.00 0.00 42.56 1.82
292 293 5.993055 TCTGCTGAGGATCACATGAAAATA 58.007 37.500 0.00 0.00 42.56 1.40
293 294 6.598503 TCTGCTGAGGATCACATGAAAATAT 58.401 36.000 0.00 0.00 42.56 1.28
294 295 7.058525 TCTGCTGAGGATCACATGAAAATATT 58.941 34.615 0.00 0.00 42.56 1.28
295 296 8.212995 TCTGCTGAGGATCACATGAAAATATTA 58.787 33.333 0.00 0.00 42.56 0.98
296 297 8.750515 TGCTGAGGATCACATGAAAATATTAA 57.249 30.769 0.00 0.00 42.56 1.40
297 298 9.358406 TGCTGAGGATCACATGAAAATATTAAT 57.642 29.630 0.00 0.00 42.56 1.40
298 299 9.622004 GCTGAGGATCACATGAAAATATTAATG 57.378 33.333 0.00 0.00 42.56 1.90
301 302 9.837525 GAGGATCACATGAAAATATTAATGAGC 57.162 33.333 0.00 0.00 32.44 4.26
302 303 9.358406 AGGATCACATGAAAATATTAATGAGCA 57.642 29.630 0.00 0.00 32.44 4.26
303 304 9.403110 GGATCACATGAAAATATTAATGAGCAC 57.597 33.333 0.00 0.00 32.44 4.40
305 306 9.961265 ATCACATGAAAATATTAATGAGCACTG 57.039 29.630 0.00 2.06 32.44 3.66
306 307 8.959548 TCACATGAAAATATTAATGAGCACTGT 58.040 29.630 0.00 0.00 32.44 3.55
307 308 9.577110 CACATGAAAATATTAATGAGCACTGTT 57.423 29.630 0.00 0.00 32.44 3.16
384 385 4.619233 AAAAACCCTGCCCTCCAC 57.381 55.556 0.00 0.00 0.00 4.02
385 386 1.152333 AAAAACCCTGCCCTCCACC 60.152 57.895 0.00 0.00 0.00 4.61
386 387 1.955458 AAAAACCCTGCCCTCCACCA 61.955 55.000 0.00 0.00 0.00 4.17
387 388 1.739608 AAAACCCTGCCCTCCACCAT 61.740 55.000 0.00 0.00 0.00 3.55
388 389 1.739608 AAACCCTGCCCTCCACCATT 61.740 55.000 0.00 0.00 0.00 3.16
389 390 2.043652 CCCTGCCCTCCACCATTG 60.044 66.667 0.00 0.00 0.00 2.82
390 391 2.615465 CCCTGCCCTCCACCATTGA 61.615 63.158 0.00 0.00 0.00 2.57
391 392 1.616921 CCTGCCCTCCACCATTGAT 59.383 57.895 0.00 0.00 0.00 2.57
392 393 0.846015 CCTGCCCTCCACCATTGATA 59.154 55.000 0.00 0.00 0.00 2.15
393 394 1.477558 CCTGCCCTCCACCATTGATAC 60.478 57.143 0.00 0.00 0.00 2.24
394 395 1.212688 CTGCCCTCCACCATTGATACA 59.787 52.381 0.00 0.00 0.00 2.29
395 396 1.638070 TGCCCTCCACCATTGATACAA 59.362 47.619 0.00 0.00 0.00 2.41
396 397 2.042297 TGCCCTCCACCATTGATACAAA 59.958 45.455 0.00 0.00 0.00 2.83
397 398 3.299503 GCCCTCCACCATTGATACAAAT 58.700 45.455 0.00 0.00 0.00 2.32
398 399 3.068590 GCCCTCCACCATTGATACAAATG 59.931 47.826 0.00 0.00 37.30 2.32
399 400 4.535781 CCCTCCACCATTGATACAAATGA 58.464 43.478 0.00 0.00 39.46 2.57
400 401 4.339247 CCCTCCACCATTGATACAAATGAC 59.661 45.833 0.00 0.00 39.46 3.06
401 402 4.035558 CCTCCACCATTGATACAAATGACG 59.964 45.833 0.00 0.00 39.46 4.35
402 403 3.944650 TCCACCATTGATACAAATGACGG 59.055 43.478 0.00 0.00 39.46 4.79
403 404 3.066621 CCACCATTGATACAAATGACGGG 59.933 47.826 0.00 0.00 39.46 5.28
404 405 3.066621 CACCATTGATACAAATGACGGGG 59.933 47.826 0.00 0.00 39.46 5.73
405 406 3.287222 CCATTGATACAAATGACGGGGT 58.713 45.455 0.00 0.00 39.46 4.95
406 407 3.699038 CCATTGATACAAATGACGGGGTT 59.301 43.478 0.00 0.00 39.46 4.11
407 408 4.159506 CCATTGATACAAATGACGGGGTTT 59.840 41.667 0.00 0.00 39.46 3.27
408 409 5.337169 CCATTGATACAAATGACGGGGTTTT 60.337 40.000 0.00 0.00 39.46 2.43
409 410 6.127591 CCATTGATACAAATGACGGGGTTTTA 60.128 38.462 0.00 0.00 39.46 1.52
410 411 6.503589 TTGATACAAATGACGGGGTTTTAG 57.496 37.500 0.00 0.00 0.00 1.85
411 412 5.562635 TGATACAAATGACGGGGTTTTAGT 58.437 37.500 0.00 0.00 0.00 2.24
412 413 5.413213 TGATACAAATGACGGGGTTTTAGTG 59.587 40.000 0.00 0.00 0.00 2.74
413 414 2.295070 ACAAATGACGGGGTTTTAGTGC 59.705 45.455 0.00 0.00 0.00 4.40
414 415 2.279935 AATGACGGGGTTTTAGTGCA 57.720 45.000 0.00 0.00 0.00 4.57
415 416 2.507407 ATGACGGGGTTTTAGTGCAT 57.493 45.000 0.00 0.00 0.00 3.96
416 417 1.816074 TGACGGGGTTTTAGTGCATC 58.184 50.000 0.00 0.00 0.00 3.91
417 418 1.092348 GACGGGGTTTTAGTGCATCC 58.908 55.000 0.00 0.00 0.00 3.51
418 419 0.323087 ACGGGGTTTTAGTGCATCCC 60.323 55.000 0.00 0.00 37.59 3.85
419 420 0.034477 CGGGGTTTTAGTGCATCCCT 60.034 55.000 0.00 0.00 38.31 4.20
420 421 1.615919 CGGGGTTTTAGTGCATCCCTT 60.616 52.381 0.00 0.00 38.31 3.95
421 422 1.824852 GGGGTTTTAGTGCATCCCTTG 59.175 52.381 0.00 0.00 38.31 3.61
422 423 2.556559 GGGGTTTTAGTGCATCCCTTGA 60.557 50.000 0.00 0.00 38.31 3.02
423 424 3.161866 GGGTTTTAGTGCATCCCTTGAA 58.838 45.455 0.00 0.00 35.63 2.69
424 425 3.193479 GGGTTTTAGTGCATCCCTTGAAG 59.807 47.826 0.00 0.00 35.63 3.02
425 426 4.079253 GGTTTTAGTGCATCCCTTGAAGA 58.921 43.478 0.00 0.00 0.00 2.87
426 427 4.082733 GGTTTTAGTGCATCCCTTGAAGAC 60.083 45.833 0.00 0.00 0.00 3.01
427 428 4.365514 TTTAGTGCATCCCTTGAAGACA 57.634 40.909 0.00 0.00 0.00 3.41
428 429 2.191128 AGTGCATCCCTTGAAGACAC 57.809 50.000 0.00 0.00 0.00 3.67
429 430 1.168714 GTGCATCCCTTGAAGACACC 58.831 55.000 0.00 0.00 0.00 4.16
430 431 0.038166 TGCATCCCTTGAAGACACCC 59.962 55.000 0.00 0.00 0.00 4.61
431 432 0.329596 GCATCCCTTGAAGACACCCT 59.670 55.000 0.00 0.00 0.00 4.34
432 433 1.272147 GCATCCCTTGAAGACACCCTT 60.272 52.381 0.00 0.00 37.93 3.95
433 434 2.026262 GCATCCCTTGAAGACACCCTTA 60.026 50.000 0.00 0.00 34.68 2.69
434 435 3.878778 CATCCCTTGAAGACACCCTTAG 58.121 50.000 0.00 0.00 34.68 2.18
435 436 2.986050 TCCCTTGAAGACACCCTTAGT 58.014 47.619 0.00 0.00 34.68 2.24
436 437 3.323775 TCCCTTGAAGACACCCTTAGTT 58.676 45.455 0.00 0.00 34.68 2.24
437 438 3.720002 TCCCTTGAAGACACCCTTAGTTT 59.280 43.478 0.00 0.00 34.68 2.66
438 439 4.167307 TCCCTTGAAGACACCCTTAGTTTT 59.833 41.667 0.00 0.00 34.68 2.43
439 440 4.893524 CCCTTGAAGACACCCTTAGTTTTT 59.106 41.667 0.00 0.00 34.68 1.94
440 441 5.221244 CCCTTGAAGACACCCTTAGTTTTTG 60.221 44.000 0.00 0.00 34.68 2.44
441 442 4.911514 TGAAGACACCCTTAGTTTTTGC 57.088 40.909 0.00 0.00 34.68 3.68
442 443 3.634910 TGAAGACACCCTTAGTTTTTGCC 59.365 43.478 0.00 0.00 34.68 4.52
443 444 2.227194 AGACACCCTTAGTTTTTGCCG 58.773 47.619 0.00 0.00 0.00 5.69
444 445 1.951602 GACACCCTTAGTTTTTGCCGT 59.048 47.619 0.00 0.00 0.00 5.68
445 446 1.951602 ACACCCTTAGTTTTTGCCGTC 59.048 47.619 0.00 0.00 0.00 4.79
446 447 2.227194 CACCCTTAGTTTTTGCCGTCT 58.773 47.619 0.00 0.00 0.00 4.18
447 448 3.181452 ACACCCTTAGTTTTTGCCGTCTA 60.181 43.478 0.00 0.00 0.00 2.59
448 449 3.187842 CACCCTTAGTTTTTGCCGTCTAC 59.812 47.826 0.00 0.00 0.00 2.59
449 450 3.181452 ACCCTTAGTTTTTGCCGTCTACA 60.181 43.478 0.00 0.00 0.00 2.74
450 451 4.007659 CCCTTAGTTTTTGCCGTCTACAT 58.992 43.478 0.00 0.00 0.00 2.29
451 452 4.457949 CCCTTAGTTTTTGCCGTCTACATT 59.542 41.667 0.00 0.00 0.00 2.71
452 453 5.390613 CCTTAGTTTTTGCCGTCTACATTG 58.609 41.667 0.00 0.00 0.00 2.82
453 454 5.048991 CCTTAGTTTTTGCCGTCTACATTGT 60.049 40.000 0.00 0.00 0.00 2.71
454 455 4.911514 AGTTTTTGCCGTCTACATTGTT 57.088 36.364 0.00 0.00 0.00 2.83
455 456 5.257082 AGTTTTTGCCGTCTACATTGTTT 57.743 34.783 0.00 0.00 0.00 2.83
456 457 6.380095 AGTTTTTGCCGTCTACATTGTTTA 57.620 33.333 0.00 0.00 0.00 2.01
457 458 6.977213 AGTTTTTGCCGTCTACATTGTTTAT 58.023 32.000 0.00 0.00 0.00 1.40
458 459 8.101654 AGTTTTTGCCGTCTACATTGTTTATA 57.898 30.769 0.00 0.00 0.00 0.98
459 460 8.569641 AGTTTTTGCCGTCTACATTGTTTATAA 58.430 29.630 0.00 0.00 0.00 0.98
460 461 9.182933 GTTTTTGCCGTCTACATTGTTTATAAA 57.817 29.630 0.00 0.00 0.00 1.40
461 462 9.915629 TTTTTGCCGTCTACATTGTTTATAAAT 57.084 25.926 0.31 0.00 0.00 1.40
462 463 9.915629 TTTTGCCGTCTACATTGTTTATAAATT 57.084 25.926 0.31 0.00 0.00 1.82
463 464 9.915629 TTTGCCGTCTACATTGTTTATAAATTT 57.084 25.926 0.31 0.00 0.00 1.82
464 465 8.903570 TGCCGTCTACATTGTTTATAAATTTG 57.096 30.769 0.00 2.88 0.00 2.32
465 466 8.731605 TGCCGTCTACATTGTTTATAAATTTGA 58.268 29.630 0.00 0.00 0.00 2.69
466 467 9.730420 GCCGTCTACATTGTTTATAAATTTGAT 57.270 29.630 0.00 0.00 0.00 2.57
484 485 9.620660 AAATTTGATCAATCGTACCTTAACAAC 57.379 29.630 9.40 0.00 0.00 3.32
485 486 7.731882 TTTGATCAATCGTACCTTAACAACA 57.268 32.000 9.40 0.00 0.00 3.33
486 487 7.915293 TTGATCAATCGTACCTTAACAACAT 57.085 32.000 3.38 0.00 0.00 2.71
487 488 7.302350 TGATCAATCGTACCTTAACAACATG 57.698 36.000 0.00 0.00 0.00 3.21
488 489 6.876789 TGATCAATCGTACCTTAACAACATGT 59.123 34.615 0.00 0.00 0.00 3.21
489 490 7.389330 TGATCAATCGTACCTTAACAACATGTT 59.611 33.333 4.92 4.92 43.88 2.71
490 491 7.124347 TCAATCGTACCTTAACAACATGTTC 57.876 36.000 8.48 0.00 40.22 3.18
491 492 6.932400 TCAATCGTACCTTAACAACATGTTCT 59.068 34.615 8.48 1.31 40.22 3.01
492 493 6.963049 ATCGTACCTTAACAACATGTTCTC 57.037 37.500 8.48 0.00 40.22 2.87
493 494 5.845103 TCGTACCTTAACAACATGTTCTCA 58.155 37.500 8.48 0.00 40.22 3.27
494 495 6.460781 TCGTACCTTAACAACATGTTCTCAT 58.539 36.000 8.48 0.00 40.22 2.90
540 541 2.163818 TTTTTCTGTCGGCGTCATCT 57.836 45.000 6.85 0.00 0.00 2.90
541 542 2.163818 TTTTCTGTCGGCGTCATCTT 57.836 45.000 6.85 0.00 0.00 2.40
542 543 2.163818 TTTCTGTCGGCGTCATCTTT 57.836 45.000 6.85 0.00 0.00 2.52
543 544 2.163818 TTCTGTCGGCGTCATCTTTT 57.836 45.000 6.85 0.00 0.00 2.27
544 545 2.163818 TCTGTCGGCGTCATCTTTTT 57.836 45.000 6.85 0.00 0.00 1.94
587 588 8.856490 ATGCTTTTATATTAGTTTGCGAAAGG 57.144 30.769 0.00 0.00 0.00 3.11
588 589 8.046294 TGCTTTTATATTAGTTTGCGAAAGGA 57.954 30.769 0.00 0.00 0.00 3.36
589 590 8.181573 TGCTTTTATATTAGTTTGCGAAAGGAG 58.818 33.333 0.00 0.00 0.00 3.69
590 591 8.182227 GCTTTTATATTAGTTTGCGAAAGGAGT 58.818 33.333 0.00 0.00 0.00 3.85
595 596 8.958119 ATATTAGTTTGCGAAAGGAGTATCAA 57.042 30.769 0.00 0.00 36.25 2.57
596 597 7.865706 ATTAGTTTGCGAAAGGAGTATCAAT 57.134 32.000 0.00 0.00 36.25 2.57
608 609 3.501445 GGAGTATCAATCCAATGCAGCTC 59.499 47.826 0.00 0.00 36.79 4.09
612 613 2.123428 AATCCAATGCAGCTCGGGC 61.123 57.895 0.00 0.00 39.06 6.13
646 656 5.105752 AGCTTAGCTTAAGATCAAGACGTG 58.894 41.667 6.67 0.00 33.89 4.49
652 662 4.563184 GCTTAAGATCAAGACGTGGTACTG 59.437 45.833 6.67 0.00 0.00 2.74
664 674 2.803956 CGTGGTACTGGGTGTTAAAGTG 59.196 50.000 0.00 0.00 0.00 3.16
668 678 1.981256 ACTGGGTGTTAAAGTGGCAG 58.019 50.000 0.00 0.00 0.00 4.85
745 760 1.200519 CACCCTTCCAGATCCCGTAA 58.799 55.000 0.00 0.00 0.00 3.18
807 824 1.674980 TGCATCGCCATGTCAGCAA 60.675 52.632 0.00 0.00 31.86 3.91
822 839 2.549282 CAAAACCTCGCCACGTCG 59.451 61.111 0.00 0.00 0.00 5.12
842 859 0.825010 GCGCAGGATCATGGGGAAAT 60.825 55.000 23.43 0.00 33.94 2.17
843 860 0.956633 CGCAGGATCATGGGGAAATG 59.043 55.000 15.91 0.00 0.00 2.32
931 948 2.158957 CCAAATAGCTTCTCCCGTGCTA 60.159 50.000 0.00 0.00 42.44 3.49
936 953 1.279271 AGCTTCTCCCGTGCTAATGTT 59.721 47.619 0.00 0.00 35.05 2.71
1124 1153 0.747283 CACAGGCCTGCTGAATCTCC 60.747 60.000 33.06 0.00 0.00 3.71
1488 1529 4.640855 ACTGCGACGACCACCACG 62.641 66.667 0.00 0.00 0.00 4.94
1635 1676 2.517402 GGCCACGTCACACCCAAA 60.517 61.111 0.00 0.00 0.00 3.28
1663 1704 3.795150 GCTCGATTCTGTAAGCCTGAGAG 60.795 52.174 0.00 0.00 0.00 3.20
1671 1712 1.838077 GTAAGCCTGAGAGCCCCTTTA 59.162 52.381 0.00 0.00 0.00 1.85
1677 1718 2.105649 CCTGAGAGCCCCTTTATCTTCC 59.894 54.545 0.00 0.00 0.00 3.46
1711 1752 2.509111 ATGCGCGCTCGTGAATCA 60.509 55.556 33.29 8.79 38.14 2.57
1729 1770 0.596082 CATGACACGGGGGTTTGTTC 59.404 55.000 0.00 0.00 0.00 3.18
1919 1960 2.329614 GGCCGCGCTTGAAGGTAAA 61.330 57.895 5.56 0.00 0.00 2.01
1993 2034 2.805099 GGCTGTGATCTACTAGCAATGC 59.195 50.000 0.00 0.00 36.08 3.56
1995 2036 3.711086 CTGTGATCTACTAGCAATGCGT 58.289 45.455 0.00 0.00 0.00 5.24
1997 2038 2.721603 GTGATCTACTAGCAATGCGTCG 59.278 50.000 0.00 0.00 0.00 5.12
2106 2147 4.330074 CAGGGAATCTGTGTGTAAATCGTC 59.670 45.833 0.00 0.00 38.64 4.20
2213 4120 0.882927 TCCCGTGCTGACCTTTTTCG 60.883 55.000 0.00 0.00 0.00 3.46
2265 4174 4.520111 TCACACATCACTTGAAGGAAATGG 59.480 41.667 0.00 0.00 0.00 3.16
2280 4189 2.418368 AATGGATACTGCGCCTCAAA 57.582 45.000 4.18 0.00 37.61 2.69
2338 4250 4.972568 ACAGGGGACAATACATATACACCA 59.027 41.667 0.00 0.00 0.00 4.17
2363 4275 3.005684 TGGTTCTTCTTTGCGCATTCAAT 59.994 39.130 12.75 0.00 0.00 2.57
2368 4280 5.265477 TCTTCTTTGCGCATTCAATTATCG 58.735 37.500 12.75 0.00 0.00 2.92
2407 4325 2.099141 TGCAGCACATGAACTAGTCC 57.901 50.000 0.00 0.00 0.00 3.85
2414 4332 3.612860 GCACATGAACTAGTCCGTTACTG 59.387 47.826 0.00 0.00 39.39 2.74
2433 4351 7.410728 CGTTACTGCATTTTGTTTCATCAATCC 60.411 37.037 0.00 0.00 0.00 3.01
2434 4352 5.240121 ACTGCATTTTGTTTCATCAATCCC 58.760 37.500 0.00 0.00 0.00 3.85
2471 4389 3.066621 TGTGCATCTTGTTTCACTGAACC 59.933 43.478 0.00 0.00 0.00 3.62
2541 4459 3.267860 GAGCTGCGGCCTTCATCG 61.268 66.667 15.55 0.00 39.73 3.84
2742 4676 2.890311 TGGCAGTTTTGTTGTAGGATGG 59.110 45.455 0.00 0.00 0.00 3.51
2778 4712 5.499139 TGATTTGGTCATAAATTCGCTCC 57.501 39.130 0.00 0.00 30.78 4.70
2798 4732 0.039256 GGCGCTGCACTTTTGATTCA 60.039 50.000 7.64 0.00 0.00 2.57
2807 4741 4.202141 TGCACTTTTGATTCAGTTTGAGGG 60.202 41.667 0.00 0.00 0.00 4.30
2846 4780 4.991056 CCTTGAACGTTCAGATCTTCAGAA 59.009 41.667 28.21 10.88 38.61 3.02
2867 4801 5.185249 AGAAGATCAGCTGCAATTTGTCAAT 59.815 36.000 9.47 0.00 0.00 2.57
2868 4802 4.744570 AGATCAGCTGCAATTTGTCAATG 58.255 39.130 9.47 0.49 0.00 2.82
3048 5289 4.343814 TGGGTGAAAAAGAGATTTGGTTCC 59.656 41.667 0.00 0.00 0.00 3.62
3082 5323 3.987868 TGTATTTCTGTTCTGTCAGTCGC 59.012 43.478 0.00 0.00 36.85 5.19
3094 5379 2.243407 GTCAGTCGCTGTTAAGAGTCG 58.757 52.381 1.12 5.90 32.61 4.18
3202 5488 2.299013 CGTGGCAGATATACTTGGGCTA 59.701 50.000 0.00 0.00 0.00 3.93
3218 5504 1.165270 GCTAATTTGTCAGTGGCGGT 58.835 50.000 0.00 0.00 0.00 5.68
3313 5600 6.930164 CAGGAATTGTCATTGATGTCCAAAAA 59.070 34.615 9.28 0.00 38.43 1.94
3343 5630 4.552608 GCGCAAATTTTTACTTGAGCTC 57.447 40.909 6.82 6.82 42.76 4.09
3349 5636 5.358298 AATTTTTACTTGAGCTCACCGTC 57.642 39.130 18.03 0.00 0.00 4.79
3350 5637 2.450609 TTTACTTGAGCTCACCGTCC 57.549 50.000 18.03 0.00 0.00 4.79
3351 5638 1.334160 TTACTTGAGCTCACCGTCCA 58.666 50.000 18.03 0.00 0.00 4.02
3352 5639 1.557099 TACTTGAGCTCACCGTCCAT 58.443 50.000 18.03 0.00 0.00 3.41
3353 5640 0.247736 ACTTGAGCTCACCGTCCATC 59.752 55.000 18.03 0.00 0.00 3.51
3354 5641 0.534412 CTTGAGCTCACCGTCCATCT 59.466 55.000 18.03 0.00 0.00 2.90
3355 5642 0.532573 TTGAGCTCACCGTCCATCTC 59.467 55.000 18.03 0.00 0.00 2.75
3356 5643 0.323816 TGAGCTCACCGTCCATCTCT 60.324 55.000 13.74 0.00 0.00 3.10
3357 5644 1.064685 TGAGCTCACCGTCCATCTCTA 60.065 52.381 13.74 0.00 0.00 2.43
3358 5645 2.025155 GAGCTCACCGTCCATCTCTAA 58.975 52.381 9.40 0.00 0.00 2.10
3359 5646 2.028130 AGCTCACCGTCCATCTCTAAG 58.972 52.381 0.00 0.00 0.00 2.18
3360 5647 1.751924 GCTCACCGTCCATCTCTAAGT 59.248 52.381 0.00 0.00 0.00 2.24
3361 5648 2.950309 GCTCACCGTCCATCTCTAAGTA 59.050 50.000 0.00 0.00 0.00 2.24
3362 5649 3.243134 GCTCACCGTCCATCTCTAAGTAC 60.243 52.174 0.00 0.00 0.00 2.73
3363 5650 3.945921 CTCACCGTCCATCTCTAAGTACA 59.054 47.826 0.00 0.00 0.00 2.90
3364 5651 4.533815 TCACCGTCCATCTCTAAGTACAT 58.466 43.478 0.00 0.00 0.00 2.29
3365 5652 4.338400 TCACCGTCCATCTCTAAGTACATG 59.662 45.833 0.00 0.00 0.00 3.21
3366 5653 4.098044 CACCGTCCATCTCTAAGTACATGT 59.902 45.833 2.69 2.69 0.00 3.21
3367 5654 5.298527 CACCGTCCATCTCTAAGTACATGTA 59.701 44.000 0.08 0.08 0.00 2.29
3368 5655 6.016192 CACCGTCCATCTCTAAGTACATGTAT 60.016 42.308 9.18 0.00 0.00 2.29
3369 5656 6.016192 ACCGTCCATCTCTAAGTACATGTATG 60.016 42.308 9.18 1.43 0.00 2.39
3370 5657 6.016192 CCGTCCATCTCTAAGTACATGTATGT 60.016 42.308 9.18 2.76 44.48 2.29
3371 5658 7.174426 CCGTCCATCTCTAAGTACATGTATGTA 59.826 40.741 9.18 3.81 41.97 2.29
3372 5659 8.731605 CGTCCATCTCTAAGTACATGTATGTAT 58.268 37.037 9.18 0.00 44.25 2.29
3373 5660 9.847706 GTCCATCTCTAAGTACATGTATGTATG 57.152 37.037 9.18 6.59 44.25 2.39
3374 5661 9.588096 TCCATCTCTAAGTACATGTATGTATGT 57.412 33.333 9.18 0.00 44.25 2.29
3375 5662 9.847706 CCATCTCTAAGTACATGTATGTATGTC 57.152 37.037 9.18 0.00 44.25 3.06
3380 5667 9.286170 TCTAAGTACATGTATGTATGTCTCTCC 57.714 37.037 9.18 0.00 44.25 3.71
3381 5668 6.902771 AGTACATGTATGTATGTCTCTCCC 57.097 41.667 9.18 0.00 44.25 4.30
3382 5669 5.775701 AGTACATGTATGTATGTCTCTCCCC 59.224 44.000 9.18 0.00 44.25 4.81
3383 5670 3.904339 ACATGTATGTATGTCTCTCCCCC 59.096 47.826 0.00 0.00 39.68 5.40
3384 5671 3.993658 TGTATGTATGTCTCTCCCCCT 57.006 47.619 0.00 0.00 0.00 4.79
3385 5672 4.280789 TGTATGTATGTCTCTCCCCCTT 57.719 45.455 0.00 0.00 0.00 3.95
3386 5673 4.631234 TGTATGTATGTCTCTCCCCCTTT 58.369 43.478 0.00 0.00 0.00 3.11
3387 5674 4.408921 TGTATGTATGTCTCTCCCCCTTTG 59.591 45.833 0.00 0.00 0.00 2.77
3388 5675 1.559682 TGTATGTCTCTCCCCCTTTGC 59.440 52.381 0.00 0.00 0.00 3.68
3389 5676 1.559682 GTATGTCTCTCCCCCTTTGCA 59.440 52.381 0.00 0.00 0.00 4.08
3390 5677 1.302907 ATGTCTCTCCCCCTTTGCAT 58.697 50.000 0.00 0.00 0.00 3.96
3391 5678 1.075601 TGTCTCTCCCCCTTTGCATT 58.924 50.000 0.00 0.00 0.00 3.56
3392 5679 1.428912 TGTCTCTCCCCCTTTGCATTT 59.571 47.619 0.00 0.00 0.00 2.32
3393 5680 2.647299 TGTCTCTCCCCCTTTGCATTTA 59.353 45.455 0.00 0.00 0.00 1.40
3394 5681 3.017442 GTCTCTCCCCCTTTGCATTTAC 58.983 50.000 0.00 0.00 0.00 2.01
3395 5682 2.919602 TCTCTCCCCCTTTGCATTTACT 59.080 45.455 0.00 0.00 0.00 2.24
3396 5683 3.333680 TCTCTCCCCCTTTGCATTTACTT 59.666 43.478 0.00 0.00 0.00 2.24
3397 5684 4.538490 TCTCTCCCCCTTTGCATTTACTTA 59.462 41.667 0.00 0.00 0.00 2.24
3398 5685 5.193728 TCTCTCCCCCTTTGCATTTACTTAT 59.806 40.000 0.00 0.00 0.00 1.73
3399 5686 5.445964 TCTCCCCCTTTGCATTTACTTATC 58.554 41.667 0.00 0.00 0.00 1.75
3400 5687 5.193728 TCTCCCCCTTTGCATTTACTTATCT 59.806 40.000 0.00 0.00 0.00 1.98
3401 5688 5.837829 TCCCCCTTTGCATTTACTTATCTT 58.162 37.500 0.00 0.00 0.00 2.40
3402 5689 5.656416 TCCCCCTTTGCATTTACTTATCTTG 59.344 40.000 0.00 0.00 0.00 3.02
3403 5690 5.656416 CCCCCTTTGCATTTACTTATCTTGA 59.344 40.000 0.00 0.00 0.00 3.02
3404 5691 6.324770 CCCCCTTTGCATTTACTTATCTTGAT 59.675 38.462 0.00 0.00 0.00 2.57
3405 5692 7.505585 CCCCCTTTGCATTTACTTATCTTGATA 59.494 37.037 0.00 0.00 0.00 2.15
3406 5693 8.571336 CCCCTTTGCATTTACTTATCTTGATAG 58.429 37.037 0.00 0.00 0.00 2.08
3407 5694 9.342308 CCCTTTGCATTTACTTATCTTGATAGA 57.658 33.333 0.00 0.00 34.21 1.98
3420 5707 3.587797 TTGATAGACAAGACACCGGTC 57.412 47.619 2.59 0.00 44.66 4.79
3428 5715 3.681835 GACACCGGTCGCACTCCT 61.682 66.667 2.59 0.00 33.68 3.69
3429 5716 3.222354 GACACCGGTCGCACTCCTT 62.222 63.158 2.59 0.00 33.68 3.36
3430 5717 2.738521 CACCGGTCGCACTCCTTG 60.739 66.667 2.59 0.00 0.00 3.61
3431 5718 3.231736 ACCGGTCGCACTCCTTGT 61.232 61.111 0.00 0.00 0.00 3.16
3432 5719 1.904865 ACCGGTCGCACTCCTTGTA 60.905 57.895 0.00 0.00 0.00 2.41
3433 5720 1.445582 CCGGTCGCACTCCTTGTAC 60.446 63.158 0.00 0.00 0.00 2.90
3434 5721 1.445582 CGGTCGCACTCCTTGTACC 60.446 63.158 0.00 0.00 32.66 3.34
3435 5722 1.874345 CGGTCGCACTCCTTGTACCT 61.874 60.000 0.00 0.00 33.42 3.08
3436 5723 1.180029 GGTCGCACTCCTTGTACCTA 58.820 55.000 0.00 0.00 33.04 3.08
3437 5724 1.755380 GGTCGCACTCCTTGTACCTAT 59.245 52.381 0.00 0.00 33.04 2.57
3438 5725 2.954318 GGTCGCACTCCTTGTACCTATA 59.046 50.000 0.00 0.00 33.04 1.31
3439 5726 3.573110 GGTCGCACTCCTTGTACCTATAT 59.427 47.826 0.00 0.00 33.04 0.86
3440 5727 4.763793 GGTCGCACTCCTTGTACCTATATA 59.236 45.833 0.00 0.00 33.04 0.86
3441 5728 5.418209 GGTCGCACTCCTTGTACCTATATAT 59.582 44.000 0.00 0.00 33.04 0.86
3442 5729 6.600822 GGTCGCACTCCTTGTACCTATATATA 59.399 42.308 0.00 0.00 33.04 0.86
3443 5730 7.284944 GGTCGCACTCCTTGTACCTATATATAT 59.715 40.741 0.00 0.00 33.04 0.86
3444 5731 9.334947 GTCGCACTCCTTGTACCTATATATATA 57.665 37.037 2.49 2.49 0.00 0.86
3477 5764 6.754702 GCCTAGTGCATGATCAATGATTAT 57.245 37.500 0.00 0.00 38.72 1.28
3478 5765 6.783162 GCCTAGTGCATGATCAATGATTATC 58.217 40.000 0.00 0.00 38.72 1.75
3479 5766 6.456584 GCCTAGTGCATGATCAATGATTATCG 60.457 42.308 0.00 0.00 38.72 2.92
3480 5767 6.815142 CCTAGTGCATGATCAATGATTATCGA 59.185 38.462 0.00 0.00 38.72 3.59
3481 5768 7.494952 CCTAGTGCATGATCAATGATTATCGAT 59.505 37.037 2.16 2.16 38.72 3.59
3482 5769 7.073342 AGTGCATGATCAATGATTATCGATG 57.927 36.000 8.54 0.00 38.72 3.84
3483 5770 5.737757 GTGCATGATCAATGATTATCGATGC 59.262 40.000 8.54 7.48 38.72 3.91
3484 5771 5.413213 TGCATGATCAATGATTATCGATGCA 59.587 36.000 8.54 16.50 40.35 3.96
3485 5772 6.094881 TGCATGATCAATGATTATCGATGCAT 59.905 34.615 8.54 0.00 39.23 3.96
3486 5773 6.633234 GCATGATCAATGATTATCGATGCATC 59.367 38.462 17.10 17.10 38.72 3.91
3487 5774 7.678690 GCATGATCAATGATTATCGATGCATCA 60.679 37.037 25.70 19.04 38.72 3.07
3488 5775 7.675962 TGATCAATGATTATCGATGCATCAA 57.324 32.000 25.70 8.93 30.79 2.57
3489 5776 8.101654 TGATCAATGATTATCGATGCATCAAA 57.898 30.769 25.70 16.25 30.79 2.69
3490 5777 8.019094 TGATCAATGATTATCGATGCATCAAAC 58.981 33.333 25.70 12.04 30.79 2.93
3491 5778 6.671190 TCAATGATTATCGATGCATCAAACC 58.329 36.000 25.70 8.89 30.79 3.27
3492 5779 6.262720 TCAATGATTATCGATGCATCAAACCA 59.737 34.615 25.70 14.00 30.79 3.67
3493 5780 6.829229 ATGATTATCGATGCATCAAACCAT 57.171 33.333 25.70 15.50 30.79 3.55
3494 5781 6.638096 TGATTATCGATGCATCAAACCATT 57.362 33.333 25.70 4.56 0.00 3.16
3495 5782 6.671190 TGATTATCGATGCATCAAACCATTC 58.329 36.000 25.70 13.09 0.00 2.67
3496 5783 6.487668 TGATTATCGATGCATCAAACCATTCT 59.512 34.615 25.70 1.62 0.00 2.40
3497 5784 7.661027 TGATTATCGATGCATCAAACCATTCTA 59.339 33.333 25.70 0.83 0.00 2.10
3498 5785 7.984422 TTATCGATGCATCAAACCATTCTAT 57.016 32.000 25.70 6.06 0.00 1.98
3499 5786 9.671279 ATTATCGATGCATCAAACCATTCTATA 57.329 29.630 25.70 5.25 0.00 1.31
3500 5787 6.785488 TCGATGCATCAAACCATTCTATAC 57.215 37.500 25.70 0.00 0.00 1.47
3501 5788 6.287525 TCGATGCATCAAACCATTCTATACA 58.712 36.000 25.70 0.00 0.00 2.29
3502 5789 6.936335 TCGATGCATCAAACCATTCTATACAT 59.064 34.615 25.70 0.00 0.00 2.29
3503 5790 7.019418 CGATGCATCAAACCATTCTATACATG 58.981 38.462 25.70 0.00 0.00 3.21
3504 5791 6.638096 TGCATCAAACCATTCTATACATGG 57.362 37.500 0.00 5.06 46.07 3.66
3515 5802 7.716612 CCATTCTATACATGGTATCTATCGCA 58.283 38.462 0.00 0.00 37.07 5.10
3516 5803 8.197439 CCATTCTATACATGGTATCTATCGCAA 58.803 37.037 0.00 0.00 37.07 4.85
3517 5804 9.242477 CATTCTATACATGGTATCTATCGCAAG 57.758 37.037 0.00 0.00 0.00 4.01
3518 5805 7.939784 TCTATACATGGTATCTATCGCAAGT 57.060 36.000 0.00 0.00 39.48 3.16
3519 5806 7.986562 TCTATACATGGTATCTATCGCAAGTC 58.013 38.462 0.00 0.00 39.48 3.01
3520 5807 4.937201 ACATGGTATCTATCGCAAGTCA 57.063 40.909 0.00 0.00 39.48 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.220674 TGTCAACACATTCACCCATGA 57.779 42.857 0.00 0.00 0.00 3.07
2 3 4.239304 CATTGTCAACACATTCACCCATG 58.761 43.478 0.00 0.00 30.55 3.66
3 4 3.896888 ACATTGTCAACACATTCACCCAT 59.103 39.130 0.00 0.00 30.55 4.00
4 5 3.295093 ACATTGTCAACACATTCACCCA 58.705 40.909 0.00 0.00 30.55 4.51
5 6 4.320608 AACATTGTCAACACATTCACCC 57.679 40.909 0.00 0.00 30.55 4.61
6 7 4.507388 CCAAACATTGTCAACACATTCACC 59.493 41.667 0.00 0.00 30.55 4.02
7 8 4.025813 GCCAAACATTGTCAACACATTCAC 60.026 41.667 0.00 0.00 30.55 3.18
8 9 4.118410 GCCAAACATTGTCAACACATTCA 58.882 39.130 0.00 0.00 30.55 2.57
9 10 4.370917 AGCCAAACATTGTCAACACATTC 58.629 39.130 0.00 0.00 30.55 2.67
10 11 4.405116 AGCCAAACATTGTCAACACATT 57.595 36.364 0.00 0.00 30.55 2.71
11 12 4.141981 TGAAGCCAAACATTGTCAACACAT 60.142 37.500 0.00 0.00 30.55 3.21
12 13 3.194329 TGAAGCCAAACATTGTCAACACA 59.806 39.130 0.00 0.00 0.00 3.72
13 14 3.779759 TGAAGCCAAACATTGTCAACAC 58.220 40.909 0.00 0.00 0.00 3.32
14 15 4.669206 ATGAAGCCAAACATTGTCAACA 57.331 36.364 0.00 0.00 0.00 3.33
15 16 7.171337 ACAAATATGAAGCCAAACATTGTCAAC 59.829 33.333 0.00 0.00 0.00 3.18
16 17 7.215789 ACAAATATGAAGCCAAACATTGTCAA 58.784 30.769 0.00 0.00 0.00 3.18
17 18 6.757237 ACAAATATGAAGCCAAACATTGTCA 58.243 32.000 0.00 0.00 0.00 3.58
18 19 8.647226 GTTACAAATATGAAGCCAAACATTGTC 58.353 33.333 0.00 0.00 0.00 3.18
19 20 8.367156 AGTTACAAATATGAAGCCAAACATTGT 58.633 29.630 0.00 0.00 0.00 2.71
20 21 8.649841 CAGTTACAAATATGAAGCCAAACATTG 58.350 33.333 0.00 0.00 0.00 2.82
21 22 8.584157 TCAGTTACAAATATGAAGCCAAACATT 58.416 29.630 0.00 0.00 0.00 2.71
22 23 8.121305 TCAGTTACAAATATGAAGCCAAACAT 57.879 30.769 0.00 0.00 0.00 2.71
23 24 7.517614 TCAGTTACAAATATGAAGCCAAACA 57.482 32.000 0.00 0.00 0.00 2.83
24 25 8.863049 CATTCAGTTACAAATATGAAGCCAAAC 58.137 33.333 0.00 0.00 35.31 2.93
25 26 8.584157 ACATTCAGTTACAAATATGAAGCCAAA 58.416 29.630 0.00 0.00 35.31 3.28
26 27 8.028354 CACATTCAGTTACAAATATGAAGCCAA 58.972 33.333 0.00 0.00 35.31 4.52
27 28 7.176515 ACACATTCAGTTACAAATATGAAGCCA 59.823 33.333 0.00 0.00 35.31 4.75
28 29 7.538575 ACACATTCAGTTACAAATATGAAGCC 58.461 34.615 0.00 0.00 35.31 4.35
29 30 9.490663 GTACACATTCAGTTACAAATATGAAGC 57.509 33.333 0.00 0.00 35.31 3.86
36 37 9.210329 TCGTATTGTACACATTCAGTTACAAAT 57.790 29.630 0.00 0.00 37.31 2.32
37 38 8.489559 GTCGTATTGTACACATTCAGTTACAAA 58.510 33.333 0.00 0.00 37.31 2.83
38 39 7.652507 TGTCGTATTGTACACATTCAGTTACAA 59.347 33.333 0.00 0.00 37.71 2.41
39 40 7.146648 TGTCGTATTGTACACATTCAGTTACA 58.853 34.615 0.00 0.00 0.00 2.41
40 41 7.571089 TGTCGTATTGTACACATTCAGTTAC 57.429 36.000 0.00 0.00 0.00 2.50
41 42 8.590719 TTTGTCGTATTGTACACATTCAGTTA 57.409 30.769 0.00 0.00 0.00 2.24
42 43 7.485418 TTTGTCGTATTGTACACATTCAGTT 57.515 32.000 0.00 0.00 0.00 3.16
43 44 7.485418 TTTTGTCGTATTGTACACATTCAGT 57.515 32.000 0.00 0.00 0.00 3.41
44 45 8.948853 ATTTTTGTCGTATTGTACACATTCAG 57.051 30.769 0.00 0.00 0.00 3.02
72 73 9.449550 CGCATTTGTCTAGCATATTATTTTTCA 57.550 29.630 0.00 0.00 0.00 2.69
73 74 9.663904 TCGCATTTGTCTAGCATATTATTTTTC 57.336 29.630 0.00 0.00 0.00 2.29
76 77 9.669353 CTTTCGCATTTGTCTAGCATATTATTT 57.331 29.630 0.00 0.00 0.00 1.40
77 78 8.292448 CCTTTCGCATTTGTCTAGCATATTATT 58.708 33.333 0.00 0.00 0.00 1.40
78 79 7.661437 TCCTTTCGCATTTGTCTAGCATATTAT 59.339 33.333 0.00 0.00 0.00 1.28
79 80 6.989759 TCCTTTCGCATTTGTCTAGCATATTA 59.010 34.615 0.00 0.00 0.00 0.98
80 81 5.822519 TCCTTTCGCATTTGTCTAGCATATT 59.177 36.000 0.00 0.00 0.00 1.28
81 82 5.237344 GTCCTTTCGCATTTGTCTAGCATAT 59.763 40.000 0.00 0.00 0.00 1.78
82 83 4.570772 GTCCTTTCGCATTTGTCTAGCATA 59.429 41.667 0.00 0.00 0.00 3.14
83 84 3.375299 GTCCTTTCGCATTTGTCTAGCAT 59.625 43.478 0.00 0.00 0.00 3.79
84 85 2.742053 GTCCTTTCGCATTTGTCTAGCA 59.258 45.455 0.00 0.00 0.00 3.49
85 86 2.742053 TGTCCTTTCGCATTTGTCTAGC 59.258 45.455 0.00 0.00 0.00 3.42
86 87 5.551760 ATTGTCCTTTCGCATTTGTCTAG 57.448 39.130 0.00 0.00 0.00 2.43
87 88 4.092821 CGATTGTCCTTTCGCATTTGTCTA 59.907 41.667 0.00 0.00 0.00 2.59
88 89 3.120199 CGATTGTCCTTTCGCATTTGTCT 60.120 43.478 0.00 0.00 0.00 3.41
89 90 3.120338 TCGATTGTCCTTTCGCATTTGTC 60.120 43.478 0.00 0.00 35.39 3.18
90 91 2.811431 TCGATTGTCCTTTCGCATTTGT 59.189 40.909 0.00 0.00 35.39 2.83
91 92 3.469899 TCGATTGTCCTTTCGCATTTG 57.530 42.857 0.00 0.00 35.39 2.32
92 93 3.119849 CCTTCGATTGTCCTTTCGCATTT 60.120 43.478 0.00 0.00 35.39 2.32
93 94 2.420022 CCTTCGATTGTCCTTTCGCATT 59.580 45.455 0.00 0.00 35.39 3.56
94 95 2.009774 CCTTCGATTGTCCTTTCGCAT 58.990 47.619 0.00 0.00 35.39 4.73
95 96 1.001520 TCCTTCGATTGTCCTTTCGCA 59.998 47.619 0.00 0.00 35.39 5.10
96 97 1.393883 GTCCTTCGATTGTCCTTTCGC 59.606 52.381 0.00 0.00 35.39 4.70
97 98 1.654105 CGTCCTTCGATTGTCCTTTCG 59.346 52.381 0.00 0.00 42.86 3.46
98 99 1.393883 GCGTCCTTCGATTGTCCTTTC 59.606 52.381 0.00 0.00 42.86 2.62
99 100 1.439679 GCGTCCTTCGATTGTCCTTT 58.560 50.000 0.00 0.00 42.86 3.11
100 101 0.391263 GGCGTCCTTCGATTGTCCTT 60.391 55.000 0.00 0.00 42.86 3.36
101 102 1.218316 GGCGTCCTTCGATTGTCCT 59.782 57.895 0.00 0.00 42.86 3.85
102 103 2.165301 CGGCGTCCTTCGATTGTCC 61.165 63.158 0.00 0.00 42.86 4.02
103 104 0.179156 TACGGCGTCCTTCGATTGTC 60.179 55.000 19.21 0.00 42.86 3.18
104 105 0.458669 ATACGGCGTCCTTCGATTGT 59.541 50.000 19.21 0.00 42.86 2.71
105 106 1.567504 AATACGGCGTCCTTCGATTG 58.432 50.000 19.21 0.00 42.86 2.67
106 107 2.304751 AAATACGGCGTCCTTCGATT 57.695 45.000 19.21 6.74 42.86 3.34
107 108 3.118542 GTTAAATACGGCGTCCTTCGAT 58.881 45.455 19.21 0.00 42.86 3.59
108 109 2.529151 GTTAAATACGGCGTCCTTCGA 58.471 47.619 19.21 0.00 42.86 3.71
109 110 1.253545 CGTTAAATACGGCGTCCTTCG 59.746 52.381 19.21 11.59 46.42 3.79
110 111 2.984879 CGTTAAATACGGCGTCCTTC 57.015 50.000 19.21 2.74 46.42 3.46
120 121 1.131693 GCCAGTGTGCCCGTTAAATAC 59.868 52.381 0.00 0.00 0.00 1.89
121 122 1.455248 GCCAGTGTGCCCGTTAAATA 58.545 50.000 0.00 0.00 0.00 1.40
122 123 1.582610 CGCCAGTGTGCCCGTTAAAT 61.583 55.000 0.00 0.00 0.00 1.40
123 124 2.255172 CGCCAGTGTGCCCGTTAAA 61.255 57.895 0.00 0.00 0.00 1.52
124 125 2.666862 CGCCAGTGTGCCCGTTAA 60.667 61.111 0.00 0.00 0.00 2.01
139 140 3.267597 ATTTGTTCGTGGGCAGCGC 62.268 57.895 0.00 0.00 0.00 5.92
140 141 1.442520 CATTTGTTCGTGGGCAGCG 60.443 57.895 0.00 0.00 0.00 5.18
141 142 0.527565 ATCATTTGTTCGTGGGCAGC 59.472 50.000 0.00 0.00 0.00 5.25
142 143 3.270027 TCTATCATTTGTTCGTGGGCAG 58.730 45.455 0.00 0.00 0.00 4.85
143 144 3.342377 TCTATCATTTGTTCGTGGGCA 57.658 42.857 0.00 0.00 0.00 5.36
144 145 4.695217 TTTCTATCATTTGTTCGTGGGC 57.305 40.909 0.00 0.00 0.00 5.36
145 146 6.034898 GCAATTTTCTATCATTTGTTCGTGGG 59.965 38.462 0.00 0.00 0.00 4.61
146 147 6.034898 GGCAATTTTCTATCATTTGTTCGTGG 59.965 38.462 0.00 0.00 0.00 4.94
147 148 6.585702 TGGCAATTTTCTATCATTTGTTCGTG 59.414 34.615 0.00 0.00 0.00 4.35
148 149 6.686630 TGGCAATTTTCTATCATTTGTTCGT 58.313 32.000 0.00 0.00 0.00 3.85
149 150 7.760131 ATGGCAATTTTCTATCATTTGTTCG 57.240 32.000 0.00 0.00 0.00 3.95
150 151 8.938906 ACAATGGCAATTTTCTATCATTTGTTC 58.061 29.630 0.00 0.00 0.00 3.18
151 152 8.851541 ACAATGGCAATTTTCTATCATTTGTT 57.148 26.923 0.00 0.00 0.00 2.83
152 153 8.316214 AGACAATGGCAATTTTCTATCATTTGT 58.684 29.630 0.33 0.00 32.27 2.83
153 154 8.600625 CAGACAATGGCAATTTTCTATCATTTG 58.399 33.333 2.10 0.00 32.27 2.32
154 155 7.767198 CCAGACAATGGCAATTTTCTATCATTT 59.233 33.333 2.10 0.00 43.83 2.32
155 156 7.270047 CCAGACAATGGCAATTTTCTATCATT 58.730 34.615 2.10 0.00 43.83 2.57
156 157 6.812998 CCAGACAATGGCAATTTTCTATCAT 58.187 36.000 2.10 0.00 43.83 2.45
157 158 6.211587 CCAGACAATGGCAATTTTCTATCA 57.788 37.500 2.10 0.00 43.83 2.15
171 172 2.304180 AGTGAGGAAGACCCAGACAATG 59.696 50.000 0.00 0.00 37.41 2.82
172 173 2.625639 AGTGAGGAAGACCCAGACAAT 58.374 47.619 0.00 0.00 37.41 2.71
173 174 2.103153 AGTGAGGAAGACCCAGACAA 57.897 50.000 0.00 0.00 37.41 3.18
174 175 1.971357 GAAGTGAGGAAGACCCAGACA 59.029 52.381 0.00 0.00 37.41 3.41
175 176 1.971357 TGAAGTGAGGAAGACCCAGAC 59.029 52.381 0.00 0.00 37.41 3.51
176 177 2.398754 TGAAGTGAGGAAGACCCAGA 57.601 50.000 0.00 0.00 37.41 3.86
177 178 3.710209 AATGAAGTGAGGAAGACCCAG 57.290 47.619 0.00 0.00 37.41 4.45
178 179 3.907474 TGTAATGAAGTGAGGAAGACCCA 59.093 43.478 0.00 0.00 37.41 4.51
179 180 4.553330 TGTAATGAAGTGAGGAAGACCC 57.447 45.455 0.00 0.00 36.73 4.46
180 181 4.393371 GCTTGTAATGAAGTGAGGAAGACC 59.607 45.833 0.00 0.00 0.00 3.85
181 182 5.241662 AGCTTGTAATGAAGTGAGGAAGAC 58.758 41.667 0.00 0.00 0.00 3.01
182 183 5.489792 AGCTTGTAATGAAGTGAGGAAGA 57.510 39.130 0.00 0.00 0.00 2.87
183 184 5.702670 TGAAGCTTGTAATGAAGTGAGGAAG 59.297 40.000 2.10 0.00 0.00 3.46
184 185 5.620206 TGAAGCTTGTAATGAAGTGAGGAA 58.380 37.500 2.10 0.00 0.00 3.36
185 186 5.227569 TGAAGCTTGTAATGAAGTGAGGA 57.772 39.130 2.10 0.00 0.00 3.71
186 187 6.149973 TGAATGAAGCTTGTAATGAAGTGAGG 59.850 38.462 2.10 0.00 0.00 3.86
187 188 7.094890 ACTGAATGAAGCTTGTAATGAAGTGAG 60.095 37.037 2.10 0.00 0.00 3.51
188 189 6.712095 ACTGAATGAAGCTTGTAATGAAGTGA 59.288 34.615 2.10 0.00 0.00 3.41
189 190 6.906659 ACTGAATGAAGCTTGTAATGAAGTG 58.093 36.000 2.10 0.00 0.00 3.16
190 191 8.671921 CATACTGAATGAAGCTTGTAATGAAGT 58.328 33.333 2.10 5.31 37.86 3.01
191 192 8.671921 ACATACTGAATGAAGCTTGTAATGAAG 58.328 33.333 2.10 0.00 39.07 3.02
192 193 8.565896 ACATACTGAATGAAGCTTGTAATGAA 57.434 30.769 2.10 0.00 39.07 2.57
193 194 8.565896 AACATACTGAATGAAGCTTGTAATGA 57.434 30.769 2.10 0.00 39.07 2.57
196 197 9.278978 TGTAAACATACTGAATGAAGCTTGTAA 57.721 29.630 2.10 0.00 39.07 2.41
197 198 8.840833 TGTAAACATACTGAATGAAGCTTGTA 57.159 30.769 2.10 0.00 39.07 2.41
198 199 7.744087 TGTAAACATACTGAATGAAGCTTGT 57.256 32.000 2.10 0.00 39.07 3.16
199 200 9.630098 AATTGTAAACATACTGAATGAAGCTTG 57.370 29.630 2.10 0.00 39.07 4.01
249 250 9.421806 CAGCAGAATAACCAAATACAATGAAAA 57.578 29.630 0.00 0.00 0.00 2.29
250 251 8.801299 TCAGCAGAATAACCAAATACAATGAAA 58.199 29.630 0.00 0.00 0.00 2.69
251 252 8.347004 TCAGCAGAATAACCAAATACAATGAA 57.653 30.769 0.00 0.00 0.00 2.57
252 253 7.067372 CCTCAGCAGAATAACCAAATACAATGA 59.933 37.037 0.00 0.00 0.00 2.57
253 254 7.067372 TCCTCAGCAGAATAACCAAATACAATG 59.933 37.037 0.00 0.00 0.00 2.82
254 255 7.118723 TCCTCAGCAGAATAACCAAATACAAT 58.881 34.615 0.00 0.00 0.00 2.71
255 256 6.480763 TCCTCAGCAGAATAACCAAATACAA 58.519 36.000 0.00 0.00 0.00 2.41
256 257 6.061022 TCCTCAGCAGAATAACCAAATACA 57.939 37.500 0.00 0.00 0.00 2.29
257 258 6.767902 TGATCCTCAGCAGAATAACCAAATAC 59.232 38.462 0.00 0.00 0.00 1.89
258 259 6.767902 GTGATCCTCAGCAGAATAACCAAATA 59.232 38.462 0.00 0.00 0.00 1.40
259 260 5.591877 GTGATCCTCAGCAGAATAACCAAAT 59.408 40.000 0.00 0.00 0.00 2.32
260 261 4.943705 GTGATCCTCAGCAGAATAACCAAA 59.056 41.667 0.00 0.00 0.00 3.28
261 262 4.019411 TGTGATCCTCAGCAGAATAACCAA 60.019 41.667 0.00 0.00 0.00 3.67
262 263 3.519107 TGTGATCCTCAGCAGAATAACCA 59.481 43.478 0.00 0.00 0.00 3.67
263 264 4.142609 TGTGATCCTCAGCAGAATAACC 57.857 45.455 0.00 0.00 0.00 2.85
264 265 5.363101 TCATGTGATCCTCAGCAGAATAAC 58.637 41.667 0.00 0.00 0.00 1.89
265 266 5.619132 TCATGTGATCCTCAGCAGAATAA 57.381 39.130 0.00 0.00 0.00 1.40
266 267 5.619132 TTCATGTGATCCTCAGCAGAATA 57.381 39.130 0.00 0.00 0.00 1.75
267 268 4.498894 TTCATGTGATCCTCAGCAGAAT 57.501 40.909 0.00 0.00 0.00 2.40
268 269 3.986996 TTCATGTGATCCTCAGCAGAA 57.013 42.857 0.00 0.00 0.00 3.02
269 270 3.986996 TTTCATGTGATCCTCAGCAGA 57.013 42.857 0.00 0.00 0.00 4.26
270 271 6.879276 ATATTTTCATGTGATCCTCAGCAG 57.121 37.500 0.00 0.00 0.00 4.24
271 272 8.750515 TTAATATTTTCATGTGATCCTCAGCA 57.249 30.769 0.00 0.00 0.00 4.41
272 273 9.622004 CATTAATATTTTCATGTGATCCTCAGC 57.378 33.333 0.00 0.00 0.00 4.26
275 276 9.837525 GCTCATTAATATTTTCATGTGATCCTC 57.162 33.333 0.00 0.00 0.00 3.71
276 277 9.358406 TGCTCATTAATATTTTCATGTGATCCT 57.642 29.630 0.00 0.00 0.00 3.24
277 278 9.403110 GTGCTCATTAATATTTTCATGTGATCC 57.597 33.333 0.00 0.00 0.00 3.36
279 280 9.961265 CAGTGCTCATTAATATTTTCATGTGAT 57.039 29.630 0.00 0.00 0.00 3.06
280 281 8.959548 ACAGTGCTCATTAATATTTTCATGTGA 58.040 29.630 0.00 0.00 0.00 3.58
281 282 9.577110 AACAGTGCTCATTAATATTTTCATGTG 57.423 29.630 0.00 0.00 0.00 3.21
367 368 1.152333 GGTGGAGGGCAGGGTTTTT 60.152 57.895 0.00 0.00 0.00 1.94
368 369 1.739608 ATGGTGGAGGGCAGGGTTTT 61.740 55.000 0.00 0.00 0.00 2.43
369 370 1.739608 AATGGTGGAGGGCAGGGTTT 61.740 55.000 0.00 0.00 0.00 3.27
370 371 2.169810 AATGGTGGAGGGCAGGGTT 61.170 57.895 0.00 0.00 0.00 4.11
371 372 2.535317 AATGGTGGAGGGCAGGGT 60.535 61.111 0.00 0.00 0.00 4.34
372 373 1.941403 ATCAATGGTGGAGGGCAGGG 61.941 60.000 0.00 0.00 0.00 4.45
373 374 0.846015 TATCAATGGTGGAGGGCAGG 59.154 55.000 0.00 0.00 0.00 4.85
374 375 1.212688 TGTATCAATGGTGGAGGGCAG 59.787 52.381 0.00 0.00 0.00 4.85
375 376 1.294041 TGTATCAATGGTGGAGGGCA 58.706 50.000 0.00 0.00 0.00 5.36
376 377 2.435372 TTGTATCAATGGTGGAGGGC 57.565 50.000 0.00 0.00 0.00 5.19
377 378 4.339247 GTCATTTGTATCAATGGTGGAGGG 59.661 45.833 0.00 0.00 0.00 4.30
378 379 4.035558 CGTCATTTGTATCAATGGTGGAGG 59.964 45.833 0.00 0.00 0.00 4.30
379 380 4.035558 CCGTCATTTGTATCAATGGTGGAG 59.964 45.833 0.00 0.00 0.00 3.86
380 381 3.944650 CCGTCATTTGTATCAATGGTGGA 59.055 43.478 0.00 0.00 0.00 4.02
381 382 3.066621 CCCGTCATTTGTATCAATGGTGG 59.933 47.826 0.00 0.00 0.00 4.61
382 383 3.066621 CCCCGTCATTTGTATCAATGGTG 59.933 47.826 0.00 0.00 0.00 4.17
383 384 3.287222 CCCCGTCATTTGTATCAATGGT 58.713 45.455 0.00 0.00 0.00 3.55
384 385 3.287222 ACCCCGTCATTTGTATCAATGG 58.713 45.455 0.00 0.00 0.00 3.16
385 386 4.981806 AACCCCGTCATTTGTATCAATG 57.018 40.909 0.00 0.00 0.00 2.82
386 387 5.993748 AAAACCCCGTCATTTGTATCAAT 57.006 34.783 0.00 0.00 0.00 2.57
387 388 6.005198 ACTAAAACCCCGTCATTTGTATCAA 58.995 36.000 0.00 0.00 0.00 2.57
388 389 5.413213 CACTAAAACCCCGTCATTTGTATCA 59.587 40.000 0.00 0.00 0.00 2.15
389 390 5.675323 GCACTAAAACCCCGTCATTTGTATC 60.675 44.000 0.00 0.00 0.00 2.24
390 391 4.157105 GCACTAAAACCCCGTCATTTGTAT 59.843 41.667 0.00 0.00 0.00 2.29
391 392 3.502979 GCACTAAAACCCCGTCATTTGTA 59.497 43.478 0.00 0.00 0.00 2.41
392 393 2.295070 GCACTAAAACCCCGTCATTTGT 59.705 45.455 0.00 0.00 0.00 2.83
393 394 2.294791 TGCACTAAAACCCCGTCATTTG 59.705 45.455 0.00 0.00 0.00 2.32
394 395 2.588620 TGCACTAAAACCCCGTCATTT 58.411 42.857 0.00 0.00 0.00 2.32
395 396 2.279935 TGCACTAAAACCCCGTCATT 57.720 45.000 0.00 0.00 0.00 2.57
396 397 2.365582 GATGCACTAAAACCCCGTCAT 58.634 47.619 0.00 0.00 0.00 3.06
397 398 1.612199 GGATGCACTAAAACCCCGTCA 60.612 52.381 0.00 0.00 0.00 4.35
398 399 1.092348 GGATGCACTAAAACCCCGTC 58.908 55.000 0.00 0.00 0.00 4.79
399 400 0.323087 GGGATGCACTAAAACCCCGT 60.323 55.000 0.00 0.00 35.00 5.28
400 401 0.034477 AGGGATGCACTAAAACCCCG 60.034 55.000 0.00 0.00 41.26 5.73
401 402 1.824852 CAAGGGATGCACTAAAACCCC 59.175 52.381 0.00 0.00 41.26 4.95
402 403 2.802719 TCAAGGGATGCACTAAAACCC 58.197 47.619 0.00 0.00 40.71 4.11
403 404 4.079253 TCTTCAAGGGATGCACTAAAACC 58.921 43.478 0.00 0.00 0.00 3.27
404 405 4.518970 TGTCTTCAAGGGATGCACTAAAAC 59.481 41.667 0.00 0.00 0.00 2.43
405 406 4.518970 GTGTCTTCAAGGGATGCACTAAAA 59.481 41.667 0.00 0.00 0.00 1.52
406 407 4.072131 GTGTCTTCAAGGGATGCACTAAA 58.928 43.478 0.00 0.00 0.00 1.85
407 408 3.559171 GGTGTCTTCAAGGGATGCACTAA 60.559 47.826 0.00 0.00 31.85 2.24
408 409 2.027192 GGTGTCTTCAAGGGATGCACTA 60.027 50.000 0.00 0.00 31.85 2.74
409 410 1.271597 GGTGTCTTCAAGGGATGCACT 60.272 52.381 0.00 0.00 31.85 4.40
410 411 1.168714 GGTGTCTTCAAGGGATGCAC 58.831 55.000 0.00 0.00 0.00 4.57
411 412 0.038166 GGGTGTCTTCAAGGGATGCA 59.962 55.000 0.00 0.00 0.00 3.96
412 413 0.329596 AGGGTGTCTTCAAGGGATGC 59.670 55.000 0.00 0.00 0.00 3.91
413 414 2.887151 AAGGGTGTCTTCAAGGGATG 57.113 50.000 0.00 0.00 0.00 3.51
414 415 3.532102 ACTAAGGGTGTCTTCAAGGGAT 58.468 45.455 0.00 0.00 36.93 3.85
415 416 2.986050 ACTAAGGGTGTCTTCAAGGGA 58.014 47.619 0.00 0.00 36.93 4.20
416 417 3.790089 AACTAAGGGTGTCTTCAAGGG 57.210 47.619 0.00 0.00 36.93 3.95
417 418 5.736207 GCAAAAACTAAGGGTGTCTTCAAGG 60.736 44.000 0.00 0.00 36.93 3.61
418 419 5.281727 GCAAAAACTAAGGGTGTCTTCAAG 58.718 41.667 0.00 0.00 36.93 3.02
419 420 4.098807 GGCAAAAACTAAGGGTGTCTTCAA 59.901 41.667 0.00 0.00 36.93 2.69
420 421 3.634910 GGCAAAAACTAAGGGTGTCTTCA 59.365 43.478 0.00 0.00 36.93 3.02
421 422 3.304458 CGGCAAAAACTAAGGGTGTCTTC 60.304 47.826 0.00 0.00 36.93 2.87
422 423 2.621526 CGGCAAAAACTAAGGGTGTCTT 59.378 45.455 0.00 0.00 39.40 3.01
423 424 2.227194 CGGCAAAAACTAAGGGTGTCT 58.773 47.619 0.00 0.00 0.00 3.41
424 425 1.951602 ACGGCAAAAACTAAGGGTGTC 59.048 47.619 0.00 0.00 0.00 3.67
425 426 1.951602 GACGGCAAAAACTAAGGGTGT 59.048 47.619 0.00 0.00 0.00 4.16
426 427 2.227194 AGACGGCAAAAACTAAGGGTG 58.773 47.619 0.00 0.00 0.00 4.61
427 428 2.651382 AGACGGCAAAAACTAAGGGT 57.349 45.000 0.00 0.00 0.00 4.34
428 429 3.404899 TGTAGACGGCAAAAACTAAGGG 58.595 45.455 0.00 0.00 0.00 3.95
429 430 5.048991 ACAATGTAGACGGCAAAAACTAAGG 60.049 40.000 0.00 0.00 0.00 2.69
430 431 5.997385 ACAATGTAGACGGCAAAAACTAAG 58.003 37.500 0.00 0.00 0.00 2.18
431 432 6.380095 AACAATGTAGACGGCAAAAACTAA 57.620 33.333 0.00 0.00 0.00 2.24
432 433 6.380095 AAACAATGTAGACGGCAAAAACTA 57.620 33.333 0.00 0.00 0.00 2.24
433 434 4.911514 AACAATGTAGACGGCAAAAACT 57.088 36.364 0.00 0.00 0.00 2.66
434 435 8.730970 TTATAAACAATGTAGACGGCAAAAAC 57.269 30.769 0.00 0.00 0.00 2.43
435 436 9.915629 ATTTATAAACAATGTAGACGGCAAAAA 57.084 25.926 0.00 0.00 0.00 1.94
436 437 9.915629 AATTTATAAACAATGTAGACGGCAAAA 57.084 25.926 0.00 0.00 0.00 2.44
437 438 9.915629 AAATTTATAAACAATGTAGACGGCAAA 57.084 25.926 0.00 0.00 0.00 3.68
438 439 9.347934 CAAATTTATAAACAATGTAGACGGCAA 57.652 29.630 0.00 0.00 0.00 4.52
439 440 8.731605 TCAAATTTATAAACAATGTAGACGGCA 58.268 29.630 0.00 0.00 0.00 5.69
440 441 9.730420 ATCAAATTTATAAACAATGTAGACGGC 57.270 29.630 0.00 0.00 0.00 5.68
458 459 9.620660 GTTGTTAAGGTACGATTGATCAAATTT 57.379 29.630 13.09 0.00 0.00 1.82
459 460 8.788806 TGTTGTTAAGGTACGATTGATCAAATT 58.211 29.630 13.09 0.00 0.00 1.82
460 461 8.330466 TGTTGTTAAGGTACGATTGATCAAAT 57.670 30.769 13.09 3.91 0.00 2.32
461 462 7.731882 TGTTGTTAAGGTACGATTGATCAAA 57.268 32.000 13.09 0.00 0.00 2.69
462 463 7.389330 ACATGTTGTTAAGGTACGATTGATCAA 59.611 33.333 11.26 11.26 0.00 2.57
463 464 6.876789 ACATGTTGTTAAGGTACGATTGATCA 59.123 34.615 0.00 0.00 0.00 2.92
464 465 7.303634 ACATGTTGTTAAGGTACGATTGATC 57.696 36.000 0.00 0.00 0.00 2.92
465 466 7.606456 AGAACATGTTGTTAAGGTACGATTGAT 59.394 33.333 17.58 0.00 41.28 2.57
466 467 6.932400 AGAACATGTTGTTAAGGTACGATTGA 59.068 34.615 17.58 0.00 41.28 2.57
467 468 7.095397 TGAGAACATGTTGTTAAGGTACGATTG 60.095 37.037 17.58 0.00 41.28 2.67
468 469 6.932400 TGAGAACATGTTGTTAAGGTACGATT 59.068 34.615 17.58 0.00 41.28 3.34
469 470 6.460781 TGAGAACATGTTGTTAAGGTACGAT 58.539 36.000 17.58 0.00 41.28 3.73
470 471 5.845103 TGAGAACATGTTGTTAAGGTACGA 58.155 37.500 17.58 0.00 41.28 3.43
471 472 6.534059 CATGAGAACATGTTGTTAAGGTACG 58.466 40.000 17.58 0.00 46.01 3.67
521 522 2.163818 AGATGACGCCGACAGAAAAA 57.836 45.000 0.00 0.00 0.00 1.94
522 523 2.163818 AAGATGACGCCGACAGAAAA 57.836 45.000 0.00 0.00 0.00 2.29
523 524 2.163818 AAAGATGACGCCGACAGAAA 57.836 45.000 0.00 0.00 0.00 2.52
524 525 2.163818 AAAAGATGACGCCGACAGAA 57.836 45.000 0.00 0.00 0.00 3.02
525 526 2.163818 AAAAAGATGACGCCGACAGA 57.836 45.000 0.00 0.00 0.00 3.41
561 562 9.301153 CCTTTCGCAAACTAATATAAAAGCATT 57.699 29.630 0.00 0.00 0.00 3.56
562 563 8.682710 TCCTTTCGCAAACTAATATAAAAGCAT 58.317 29.630 0.00 0.00 0.00 3.79
563 564 8.046294 TCCTTTCGCAAACTAATATAAAAGCA 57.954 30.769 0.00 0.00 0.00 3.91
564 565 8.182227 ACTCCTTTCGCAAACTAATATAAAAGC 58.818 33.333 0.00 0.00 0.00 3.51
570 571 8.958119 TTGATACTCCTTTCGCAAACTAATAT 57.042 30.769 0.00 0.00 0.00 1.28
571 572 8.958119 ATTGATACTCCTTTCGCAAACTAATA 57.042 30.769 0.00 0.00 0.00 0.98
572 573 7.012421 GGATTGATACTCCTTTCGCAAACTAAT 59.988 37.037 0.00 0.00 0.00 1.73
573 574 6.315393 GGATTGATACTCCTTTCGCAAACTAA 59.685 38.462 0.00 0.00 0.00 2.24
574 575 5.815740 GGATTGATACTCCTTTCGCAAACTA 59.184 40.000 0.00 0.00 0.00 2.24
575 576 4.636206 GGATTGATACTCCTTTCGCAAACT 59.364 41.667 0.00 0.00 0.00 2.66
576 577 4.394920 TGGATTGATACTCCTTTCGCAAAC 59.605 41.667 0.00 0.00 33.69 2.93
577 578 4.584874 TGGATTGATACTCCTTTCGCAAA 58.415 39.130 0.00 0.00 33.69 3.68
578 579 4.214986 TGGATTGATACTCCTTTCGCAA 57.785 40.909 0.00 0.00 33.69 4.85
579 580 3.904800 TGGATTGATACTCCTTTCGCA 57.095 42.857 0.00 0.00 33.69 5.10
580 581 4.555511 GCATTGGATTGATACTCCTTTCGC 60.556 45.833 0.00 0.00 33.69 4.70
581 582 4.576053 TGCATTGGATTGATACTCCTTTCG 59.424 41.667 0.00 0.00 33.69 3.46
582 583 5.506982 GCTGCATTGGATTGATACTCCTTTC 60.507 44.000 0.00 0.00 33.69 2.62
583 584 4.340381 GCTGCATTGGATTGATACTCCTTT 59.660 41.667 0.00 0.00 33.69 3.11
584 585 3.887716 GCTGCATTGGATTGATACTCCTT 59.112 43.478 0.00 0.00 33.69 3.36
585 586 3.137913 AGCTGCATTGGATTGATACTCCT 59.862 43.478 1.02 0.00 33.69 3.69
586 587 3.484407 AGCTGCATTGGATTGATACTCC 58.516 45.455 1.02 0.00 0.00 3.85
587 588 3.186001 CGAGCTGCATTGGATTGATACTC 59.814 47.826 1.02 0.00 0.00 2.59
588 589 3.136763 CGAGCTGCATTGGATTGATACT 58.863 45.455 1.02 0.00 0.00 2.12
589 590 2.225019 CCGAGCTGCATTGGATTGATAC 59.775 50.000 1.02 0.00 0.00 2.24
590 591 2.497138 CCGAGCTGCATTGGATTGATA 58.503 47.619 1.02 0.00 0.00 2.15
591 592 1.315690 CCGAGCTGCATTGGATTGAT 58.684 50.000 1.02 0.00 0.00 2.57
592 593 0.749091 CCCGAGCTGCATTGGATTGA 60.749 55.000 1.02 0.00 0.00 2.57
593 594 1.731700 CCCGAGCTGCATTGGATTG 59.268 57.895 1.02 0.00 0.00 2.67
594 595 2.123428 GCCCGAGCTGCATTGGATT 61.123 57.895 1.02 0.00 35.50 3.01
595 596 2.517875 GCCCGAGCTGCATTGGAT 60.518 61.111 1.02 0.00 35.50 3.41
608 609 5.740513 AAGCTAAGCTTCTTCTATAAGCCCG 60.741 44.000 0.00 0.00 46.77 6.13
646 656 2.156917 GCCACTTTAACACCCAGTACC 58.843 52.381 0.00 0.00 0.00 3.34
652 662 1.579429 CGCTGCCACTTTAACACCC 59.421 57.895 0.00 0.00 0.00 4.61
668 678 4.191485 CGTTCACATCGTCGCCGC 62.191 66.667 0.00 0.00 0.00 6.53
745 760 2.034221 GCCTTTTGCTCGGGGTCT 59.966 61.111 0.00 0.00 36.87 3.85
788 805 1.925415 TTGCTGACATGGCGATGCAC 61.925 55.000 12.30 4.25 32.14 4.57
789 806 1.242665 TTTGCTGACATGGCGATGCA 61.243 50.000 8.81 9.23 32.14 3.96
793 810 0.537143 AGGTTTTGCTGACATGGCGA 60.537 50.000 0.00 0.00 0.00 5.54
794 811 0.109597 GAGGTTTTGCTGACATGGCG 60.110 55.000 0.00 0.00 0.00 5.69
822 839 2.909457 TTTCCCCATGATCCTGCGCC 62.909 60.000 4.18 0.00 0.00 6.53
1488 1529 1.583967 CGACGAGCACGAGGATGAC 60.584 63.158 11.40 0.00 42.66 3.06
1629 1670 0.693049 AATCGAGCTCCAGTTTGGGT 59.307 50.000 8.47 0.00 38.32 4.51
1635 1676 2.159170 GCTTACAGAATCGAGCTCCAGT 60.159 50.000 8.47 0.00 32.54 4.00
1663 1704 0.108774 CTCCGGGAAGATAAAGGGGC 59.891 60.000 0.00 0.00 0.00 5.80
1711 1752 0.538746 GGAACAAACCCCCGTGTCAT 60.539 55.000 0.00 0.00 0.00 3.06
1729 1770 2.317609 CGAACACCTCCTGCAACGG 61.318 63.158 0.00 0.00 0.00 4.44
1993 2034 2.223502 ACTGATGCAGTATGTACCGACG 60.224 50.000 0.00 0.00 43.46 5.12
1995 2036 5.300792 TCATTACTGATGCAGTATGTACCGA 59.699 40.000 7.99 0.00 44.85 4.69
1997 2038 7.382110 AGATCATTACTGATGCAGTATGTACC 58.618 38.462 7.99 0.27 44.85 3.34
2106 2147 4.942852 ACCAGAAGCTGAATCTCTAATCG 58.057 43.478 0.00 0.00 32.44 3.34
2192 4099 0.106918 AAAAAGGTCAGCACGGGACA 60.107 50.000 0.00 0.00 37.00 4.02
2213 4120 8.014322 TGTGAGTATTCTTGTAATCGTCAAAC 57.986 34.615 0.00 0.00 0.00 2.93
2234 4142 3.324556 TCAAGTGATGTGTGAGGATGTGA 59.675 43.478 0.00 0.00 0.00 3.58
2265 4174 3.983741 AGATACTTTGAGGCGCAGTATC 58.016 45.455 25.83 25.83 45.29 2.24
2338 4250 1.317613 TGCGCAAAGAAGAACCATGT 58.682 45.000 8.16 0.00 0.00 3.21
2350 4262 3.856521 CCAACGATAATTGAATGCGCAAA 59.143 39.130 17.11 4.38 0.00 3.68
2363 4275 0.037697 AGTCTGCACGCCAACGATAA 60.038 50.000 0.00 0.00 43.93 1.75
2368 4280 2.074547 TTACTAGTCTGCACGCCAAC 57.925 50.000 0.00 0.00 0.00 3.77
2407 4325 6.746104 TTGATGAAACAAAATGCAGTAACG 57.254 33.333 0.00 0.00 0.00 3.18
2414 4332 6.596497 AGAATGGGATTGATGAAACAAAATGC 59.404 34.615 0.00 0.00 33.44 3.56
2433 4351 1.068748 GCACACAGCTTGTCAGAATGG 60.069 52.381 0.00 0.00 41.15 3.16
2434 4352 1.605232 TGCACACAGCTTGTCAGAATG 59.395 47.619 0.00 0.00 45.94 2.67
2471 4389 0.443869 CTTGATGAAACGACCCTGCG 59.556 55.000 0.00 0.00 37.29 5.18
2531 4449 1.941325 CAAGGTCTACGATGAAGGCC 58.059 55.000 0.00 0.00 39.13 5.19
2541 4459 1.207329 ACCGGATGAAGCAAGGTCTAC 59.793 52.381 9.46 0.00 0.00 2.59
2778 4712 1.067199 GAATCAAAAGTGCAGCGCCG 61.067 55.000 2.29 0.00 0.00 6.46
2798 4732 1.202940 GCAGAACCTTCCCCTCAAACT 60.203 52.381 0.00 0.00 0.00 2.66
2807 4741 0.402121 AAGGGACTGCAGAACCTTCC 59.598 55.000 28.72 21.14 38.96 3.46
2846 4780 4.219944 ACATTGACAAATTGCAGCTGATCT 59.780 37.500 20.43 0.00 0.00 2.75
2867 4801 6.905544 TCGTGTAAACAAACATCAACTACA 57.094 33.333 0.00 0.00 0.00 2.74
2868 4802 7.404203 ACTTCGTGTAAACAAACATCAACTAC 58.596 34.615 0.00 0.00 0.00 2.73
3048 5289 2.416547 CAGAAATACAGGACGGCACAAG 59.583 50.000 0.00 0.00 0.00 3.16
3082 5323 2.719556 CACGTGACACGACTCTTAACAG 59.280 50.000 33.12 1.07 46.05 3.16
3094 5379 1.396543 GACGAGCGATCACGTGACAC 61.397 60.000 22.71 16.63 42.74 3.67
3202 5488 0.250124 TCGACCGCCACTGACAAATT 60.250 50.000 0.00 0.00 0.00 1.82
3218 5504 2.034532 TGTAGCCGGTGGTCTCGA 59.965 61.111 1.90 0.00 0.00 4.04
3313 5600 5.831997 AGTAAAAATTTGCGCTCAGAACTT 58.168 33.333 9.73 0.00 0.00 2.66
3315 5602 5.685511 TCAAGTAAAAATTTGCGCTCAGAAC 59.314 36.000 9.73 0.00 0.00 3.01
3318 5605 4.089065 GCTCAAGTAAAAATTTGCGCTCAG 59.911 41.667 9.73 0.00 33.50 3.35
3320 5607 4.229876 AGCTCAAGTAAAAATTTGCGCTC 58.770 39.130 9.73 0.00 40.24 5.03
3322 5609 3.980775 TGAGCTCAAGTAAAAATTTGCGC 59.019 39.130 15.67 0.00 35.77 6.09
3343 5630 4.098044 ACATGTACTTAGAGATGGACGGTG 59.902 45.833 0.00 0.00 0.00 4.94
3349 5636 9.847706 GACATACATACATGTACTTAGAGATGG 57.152 37.037 7.96 0.00 45.11 3.51
3354 5641 9.286170 GGAGAGACATACATACATGTACTTAGA 57.714 37.037 7.96 0.00 45.11 2.10
3355 5642 8.516234 GGGAGAGACATACATACATGTACTTAG 58.484 40.741 7.96 1.50 45.11 2.18
3356 5643 7.450634 GGGGAGAGACATACATACATGTACTTA 59.549 40.741 7.96 2.74 45.11 2.24
3357 5644 6.267928 GGGGAGAGACATACATACATGTACTT 59.732 42.308 7.96 0.27 45.11 2.24
3358 5645 5.775701 GGGGAGAGACATACATACATGTACT 59.224 44.000 7.96 0.00 45.11 2.73
3359 5646 5.047235 GGGGGAGAGACATACATACATGTAC 60.047 48.000 7.96 0.00 45.11 2.90
3360 5647 5.084519 GGGGGAGAGACATACATACATGTA 58.915 45.833 8.27 8.27 46.21 2.29
3361 5648 3.904339 GGGGGAGAGACATACATACATGT 59.096 47.826 2.69 2.69 41.83 3.21
3362 5649 4.163427 AGGGGGAGAGACATACATACATG 58.837 47.826 0.00 0.00 0.00 3.21
3363 5650 4.493819 AGGGGGAGAGACATACATACAT 57.506 45.455 0.00 0.00 0.00 2.29
3364 5651 3.993658 AGGGGGAGAGACATACATACA 57.006 47.619 0.00 0.00 0.00 2.29
3365 5652 4.743955 GCAAAGGGGGAGAGACATACATAC 60.744 50.000 0.00 0.00 0.00 2.39
3366 5653 3.391296 GCAAAGGGGGAGAGACATACATA 59.609 47.826 0.00 0.00 0.00 2.29
3367 5654 2.173569 GCAAAGGGGGAGAGACATACAT 59.826 50.000 0.00 0.00 0.00 2.29
3368 5655 1.559682 GCAAAGGGGGAGAGACATACA 59.440 52.381 0.00 0.00 0.00 2.29
3369 5656 1.559682 TGCAAAGGGGGAGAGACATAC 59.440 52.381 0.00 0.00 0.00 2.39
3370 5657 1.965414 TGCAAAGGGGGAGAGACATA 58.035 50.000 0.00 0.00 0.00 2.29
3371 5658 1.302907 ATGCAAAGGGGGAGAGACAT 58.697 50.000 0.00 0.00 0.00 3.06
3372 5659 1.075601 AATGCAAAGGGGGAGAGACA 58.924 50.000 0.00 0.00 0.00 3.41
3373 5660 2.222227 AAATGCAAAGGGGGAGAGAC 57.778 50.000 0.00 0.00 0.00 3.36
3374 5661 2.919602 AGTAAATGCAAAGGGGGAGAGA 59.080 45.455 0.00 0.00 0.00 3.10
3375 5662 3.372440 AGTAAATGCAAAGGGGGAGAG 57.628 47.619 0.00 0.00 0.00 3.20
3376 5663 3.825908 AAGTAAATGCAAAGGGGGAGA 57.174 42.857 0.00 0.00 0.00 3.71
3377 5664 5.449553 AGATAAGTAAATGCAAAGGGGGAG 58.550 41.667 0.00 0.00 0.00 4.30
3378 5665 5.466127 AGATAAGTAAATGCAAAGGGGGA 57.534 39.130 0.00 0.00 0.00 4.81
3379 5666 5.656416 TCAAGATAAGTAAATGCAAAGGGGG 59.344 40.000 0.00 0.00 0.00 5.40
3380 5667 6.773976 TCAAGATAAGTAAATGCAAAGGGG 57.226 37.500 0.00 0.00 0.00 4.79
3381 5668 9.342308 TCTATCAAGATAAGTAAATGCAAAGGG 57.658 33.333 0.00 0.00 0.00 3.95
3400 5687 2.094906 CGACCGGTGTCTTGTCTATCAA 60.095 50.000 14.63 0.00 39.47 2.57
3401 5688 1.471287 CGACCGGTGTCTTGTCTATCA 59.529 52.381 14.63 0.00 39.47 2.15
3402 5689 1.798079 GCGACCGGTGTCTTGTCTATC 60.798 57.143 14.63 0.00 39.47 2.08
3403 5690 0.172803 GCGACCGGTGTCTTGTCTAT 59.827 55.000 14.63 0.00 39.47 1.98
3404 5691 1.174078 TGCGACCGGTGTCTTGTCTA 61.174 55.000 14.63 0.00 39.47 2.59
3405 5692 2.338984 GCGACCGGTGTCTTGTCT 59.661 61.111 14.63 0.00 39.47 3.41
3406 5693 2.028484 TGCGACCGGTGTCTTGTC 59.972 61.111 14.63 0.00 39.47 3.18
3407 5694 2.279918 GTGCGACCGGTGTCTTGT 60.280 61.111 14.63 0.00 39.47 3.16
3408 5695 2.022129 GAGTGCGACCGGTGTCTTG 61.022 63.158 14.63 0.00 39.47 3.02
3409 5696 2.338984 GAGTGCGACCGGTGTCTT 59.661 61.111 14.63 0.00 39.47 3.01
3410 5697 3.681835 GGAGTGCGACCGGTGTCT 61.682 66.667 14.63 4.24 39.47 3.41
3411 5698 3.222354 AAGGAGTGCGACCGGTGTC 62.222 63.158 14.63 3.23 38.18 3.67
3412 5699 3.231736 AAGGAGTGCGACCGGTGT 61.232 61.111 14.63 0.00 0.00 4.16
3413 5700 2.149803 TACAAGGAGTGCGACCGGTG 62.150 60.000 14.63 5.62 0.00 4.94
3414 5701 1.904865 TACAAGGAGTGCGACCGGT 60.905 57.895 6.92 6.92 0.00 5.28
3415 5702 1.445582 GTACAAGGAGTGCGACCGG 60.446 63.158 0.00 0.00 0.00 5.28
3416 5703 1.445582 GGTACAAGGAGTGCGACCG 60.446 63.158 0.00 0.00 33.10 4.79
3417 5704 1.180029 TAGGTACAAGGAGTGCGACC 58.820 55.000 0.00 0.00 36.98 4.79
3418 5705 4.850347 ATATAGGTACAAGGAGTGCGAC 57.150 45.455 0.00 0.00 33.10 5.19
3454 5741 6.456584 CGATAATCATTGATCATGCACTAGGC 60.457 42.308 0.00 0.00 45.13 3.93
3455 5742 6.815142 TCGATAATCATTGATCATGCACTAGG 59.185 38.462 0.00 0.00 32.13 3.02
3456 5743 7.823149 TCGATAATCATTGATCATGCACTAG 57.177 36.000 0.00 0.00 32.13 2.57
3457 5744 7.201582 GCATCGATAATCATTGATCATGCACTA 60.202 37.037 0.00 0.87 37.01 2.74
3458 5745 6.403309 GCATCGATAATCATTGATCATGCACT 60.403 38.462 0.00 0.00 37.01 4.40
3459 5746 5.737757 GCATCGATAATCATTGATCATGCAC 59.262 40.000 0.00 0.00 37.01 4.57
3460 5747 5.413213 TGCATCGATAATCATTGATCATGCA 59.587 36.000 17.42 17.42 40.36 3.96
3461 5748 5.875930 TGCATCGATAATCATTGATCATGC 58.124 37.500 0.00 9.25 37.25 4.06
3462 5749 7.693952 TGATGCATCGATAATCATTGATCATG 58.306 34.615 21.34 0.00 33.62 3.07
3463 5750 7.859325 TGATGCATCGATAATCATTGATCAT 57.141 32.000 21.34 0.00 33.62 2.45
3464 5751 7.675962 TTGATGCATCGATAATCATTGATCA 57.324 32.000 21.34 0.00 33.62 2.92
3465 5752 7.484007 GGTTTGATGCATCGATAATCATTGATC 59.516 37.037 21.34 8.81 33.62 2.92
3466 5753 7.040271 TGGTTTGATGCATCGATAATCATTGAT 60.040 33.333 21.34 0.00 35.92 2.57
3467 5754 6.262720 TGGTTTGATGCATCGATAATCATTGA 59.737 34.615 21.34 6.46 30.76 2.57
3468 5755 6.440436 TGGTTTGATGCATCGATAATCATTG 58.560 36.000 21.34 0.39 30.76 2.82
3469 5756 6.638096 TGGTTTGATGCATCGATAATCATT 57.362 33.333 21.34 1.90 30.76 2.57
3470 5757 6.829229 ATGGTTTGATGCATCGATAATCAT 57.171 33.333 21.34 20.74 30.76 2.45
3471 5758 6.487668 AGAATGGTTTGATGCATCGATAATCA 59.512 34.615 21.34 19.61 0.00 2.57
3472 5759 6.906659 AGAATGGTTTGATGCATCGATAATC 58.093 36.000 21.34 15.19 0.00 1.75
3473 5760 6.889301 AGAATGGTTTGATGCATCGATAAT 57.111 33.333 21.34 10.63 0.00 1.28
3474 5761 7.984422 ATAGAATGGTTTGATGCATCGATAA 57.016 32.000 21.34 12.47 0.00 1.75
3475 5762 8.093927 TGTATAGAATGGTTTGATGCATCGATA 58.906 33.333 21.34 9.83 0.00 2.92
3476 5763 6.936335 TGTATAGAATGGTTTGATGCATCGAT 59.064 34.615 21.34 4.45 0.00 3.59
3477 5764 6.287525 TGTATAGAATGGTTTGATGCATCGA 58.712 36.000 21.34 17.35 0.00 3.59
3478 5765 6.544038 TGTATAGAATGGTTTGATGCATCG 57.456 37.500 21.34 0.00 0.00 3.84
3479 5766 7.310664 CCATGTATAGAATGGTTTGATGCATC 58.689 38.462 20.14 20.14 39.87 3.91
3480 5767 7.223260 CCATGTATAGAATGGTTTGATGCAT 57.777 36.000 0.00 0.00 39.87 3.96
3481 5768 6.638096 CCATGTATAGAATGGTTTGATGCA 57.362 37.500 6.30 0.00 39.87 3.96
3490 5777 7.716612 TGCGATAGATACCATGTATAGAATGG 58.283 38.462 11.33 11.33 44.75 3.16
3491 5778 9.242477 CTTGCGATAGATACCATGTATAGAATG 57.758 37.037 0.00 0.00 39.76 2.67
3492 5779 8.972127 ACTTGCGATAGATACCATGTATAGAAT 58.028 33.333 0.00 0.00 39.76 2.40
3493 5780 8.349568 ACTTGCGATAGATACCATGTATAGAA 57.650 34.615 0.00 0.00 39.76 2.10
3494 5781 7.610305 TGACTTGCGATAGATACCATGTATAGA 59.390 37.037 0.00 0.00 39.76 1.98
3495 5782 7.762382 TGACTTGCGATAGATACCATGTATAG 58.238 38.462 0.00 0.00 39.76 1.31
3496 5783 7.696992 TGACTTGCGATAGATACCATGTATA 57.303 36.000 0.00 0.00 39.76 1.47
3497 5784 6.590234 TGACTTGCGATAGATACCATGTAT 57.410 37.500 0.00 0.00 39.76 2.29
3499 5786 4.937201 TGACTTGCGATAGATACCATGT 57.063 40.909 0.00 0.00 39.76 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.