Multiple sequence alignment - TraesCS7D01G310100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G310100 chr7D 100.000 3832 0 0 1 3832 393110948 393107117 0.000000e+00 7077.0
1 TraesCS7D01G310100 chr7B 96.272 3004 89 12 844 3829 392818375 392815377 0.000000e+00 4905.0
2 TraesCS7D01G310100 chr7B 87.781 311 21 6 1 299 392818834 392818529 7.880000e-92 348.0
3 TraesCS7D01G310100 chr7B 85.484 310 37 8 485 788 626586935 626587242 2.220000e-82 316.0
4 TraesCS7D01G310100 chr7A 94.574 3004 105 18 860 3832 445628196 445625220 0.000000e+00 4591.0
5 TraesCS7D01G310100 chr7A 85.855 304 36 7 485 783 709593945 709594246 2.220000e-82 316.0
6 TraesCS7D01G310100 chr7A 86.689 293 17 8 28 299 445642013 445641722 4.810000e-79 305.0
7 TraesCS7D01G310100 chr7A 97.143 70 1 1 330 398 445628402 445628333 2.420000e-22 117.0
8 TraesCS7D01G310100 chr7A 100.000 29 0 0 315 343 445641728 445641700 2.000000e-03 54.7
9 TraesCS7D01G310100 chr4D 86.824 296 37 2 486 780 40801295 40801589 2.850000e-86 329.0
10 TraesCS7D01G310100 chr2D 86.424 302 38 3 485 784 605457039 605457339 1.030000e-85 327.0
11 TraesCS7D01G310100 chr2A 85.623 313 39 6 474 783 196508028 196508337 1.330000e-84 324.0
12 TraesCS7D01G310100 chr5A 86.047 301 40 2 484 783 647359853 647359554 4.780000e-84 322.0
13 TraesCS7D01G310100 chr5A 85.574 305 38 6 485 785 281143761 281144063 7.990000e-82 315.0
14 TraesCS7D01G310100 chr1D 85.667 300 41 2 484 782 318585924 318585626 7.990000e-82 315.0
15 TraesCS7D01G310100 chr4A 85.113 309 40 6 485 789 615058798 615058492 1.030000e-80 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G310100 chr7D 393107117 393110948 3831 True 7077.0 7077 100.0000 1 3832 1 chr7D.!!$R1 3831
1 TraesCS7D01G310100 chr7B 392815377 392818834 3457 True 2626.5 4905 92.0265 1 3829 2 chr7B.!!$R1 3828
2 TraesCS7D01G310100 chr7A 445625220 445628402 3182 True 2354.0 4591 95.8585 330 3832 2 chr7A.!!$R1 3502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 680 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.0 17.16 17.16 37.52 3.13 F
642 704 0.039437 ACGACGAGGCGCCTATAATG 60.039 55.0 32.97 20.45 33.86 1.90 F
742 804 0.107831 TAGGGGGTGAATGTATGCGC 59.892 55.0 0.00 0.00 0.00 6.09 F
768 830 0.179100 ATGAGCGCTTGCGTCTGTAT 60.179 50.0 13.26 7.95 45.69 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1861 0.685097 TAAAGGCAACAGACCGAGCT 59.315 50.0 0.0 0.0 41.41 4.09 R
2576 2652 0.812549 AAACACACAAACGACCCACC 59.187 50.0 0.0 0.0 0.00 4.61 R
2715 2792 7.395190 TGAATATCAGAAACCAACCAATGAG 57.605 36.0 0.0 0.0 0.00 2.90 R
2968 3045 5.720520 ACCAGGAACCCTACTAGTTAAAGAG 59.279 44.0 0.0 0.0 29.64 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.243551 CAAACAGAGAATTATGCACTGTACG 58.756 40.000 3.76 0.00 40.23 3.67
25 26 4.433615 ACAGAGAATTATGCACTGTACGG 58.566 43.478 1.34 0.00 39.52 4.02
26 27 4.159693 ACAGAGAATTATGCACTGTACGGA 59.840 41.667 9.17 0.00 39.52 4.69
88 89 3.011818 TCTCTCGTTGCCGTCAATAGTA 58.988 45.455 0.00 0.00 34.29 1.82
99 100 3.675225 CCGTCAATAGTAATCGCCTGATG 59.325 47.826 0.00 0.00 34.24 3.07
118 119 6.771267 CCTGATGTAGGTAGTACTGTACATGA 59.229 42.308 22.82 17.30 42.00 3.07
131 132 8.561212 AGTACTGTACATGATCTCTTTATCGAC 58.439 37.037 19.27 0.00 0.00 4.20
166 167 1.027357 CCAATTTGCAGCCGCTAGAT 58.973 50.000 0.00 0.00 39.64 1.98
190 191 9.247126 GATATGCATAATATGACAGCTACAGAG 57.753 37.037 11.13 0.00 31.22 3.35
215 216 4.122337 TGTCCTGGGAACTTCTACAGTA 57.878 45.455 0.00 0.00 32.94 2.74
219 220 3.257624 CCTGGGAACTTCTACAGTAACGT 59.742 47.826 10.88 0.00 32.94 3.99
265 275 1.148310 GAACACTCGATGGTGGTGTG 58.852 55.000 8.01 2.99 42.37 3.82
267 277 1.334160 ACACTCGATGGTGGTGTGTA 58.666 50.000 6.59 0.00 41.75 2.90
268 278 1.899814 ACACTCGATGGTGGTGTGTAT 59.100 47.619 6.59 0.00 41.75 2.29
273 286 2.159296 TCGATGGTGGTGTGTATTCGAG 60.159 50.000 0.00 0.00 0.00 4.04
280 293 2.631062 TGGTGTGTATTCGAGTGGACTT 59.369 45.455 0.00 0.00 0.00 3.01
282 295 2.915463 GTGTGTATTCGAGTGGACTTCG 59.085 50.000 0.00 0.00 0.00 3.79
288 301 0.883833 TCGAGTGGACTTCGGGTTAC 59.116 55.000 0.00 0.00 0.00 2.50
295 308 5.485620 AGTGGACTTCGGGTTACTTATTTC 58.514 41.667 0.00 0.00 0.00 2.17
299 312 2.314323 TCGGGTTACTTATTTCGGCC 57.686 50.000 0.00 0.00 0.00 6.13
301 314 0.659427 GGGTTACTTATTTCGGCCGC 59.341 55.000 23.51 1.13 0.00 6.53
303 316 1.596260 GGTTACTTATTTCGGCCGCTC 59.404 52.381 23.51 0.58 0.00 5.03
304 317 2.273557 GTTACTTATTTCGGCCGCTCA 58.726 47.619 23.51 6.75 0.00 4.26
305 318 2.218953 TACTTATTTCGGCCGCTCAG 57.781 50.000 23.51 13.80 0.00 3.35
306 319 0.249398 ACTTATTTCGGCCGCTCAGT 59.751 50.000 23.51 14.48 0.00 3.41
307 320 1.479323 ACTTATTTCGGCCGCTCAGTA 59.521 47.619 23.51 5.06 0.00 2.74
308 321 2.128035 CTTATTTCGGCCGCTCAGTAG 58.872 52.381 23.51 9.40 0.00 2.57
309 322 1.108776 TATTTCGGCCGCTCAGTAGT 58.891 50.000 23.51 2.53 0.00 2.73
310 323 0.249398 ATTTCGGCCGCTCAGTAGTT 59.751 50.000 23.51 0.00 0.00 2.24
311 324 0.389426 TTTCGGCCGCTCAGTAGTTC 60.389 55.000 23.51 0.00 0.00 3.01
312 325 2.202756 CGGCCGCTCAGTAGTTCC 60.203 66.667 14.67 0.00 0.00 3.62
313 326 2.202756 GGCCGCTCAGTAGTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
314 327 2.572284 GCCGCTCAGTAGTTCCGT 59.428 61.111 0.00 0.00 0.00 4.69
315 328 1.080025 GCCGCTCAGTAGTTCCGTT 60.080 57.895 0.00 0.00 0.00 4.44
316 329 0.669625 GCCGCTCAGTAGTTCCGTTT 60.670 55.000 0.00 0.00 0.00 3.60
317 330 1.792006 CCGCTCAGTAGTTCCGTTTT 58.208 50.000 0.00 0.00 0.00 2.43
318 331 1.459592 CCGCTCAGTAGTTCCGTTTTG 59.540 52.381 0.00 0.00 0.00 2.44
319 332 1.459592 CGCTCAGTAGTTCCGTTTTGG 59.540 52.381 0.00 0.00 40.09 3.28
320 333 1.197036 GCTCAGTAGTTCCGTTTTGGC 59.803 52.381 0.00 0.00 37.80 4.52
321 334 2.767505 CTCAGTAGTTCCGTTTTGGCT 58.232 47.619 0.00 0.00 37.80 4.75
322 335 2.480419 CTCAGTAGTTCCGTTTTGGCTG 59.520 50.000 0.00 0.00 37.80 4.85
323 336 2.103432 TCAGTAGTTCCGTTTTGGCTGA 59.897 45.455 0.00 0.00 37.80 4.26
324 337 3.074412 CAGTAGTTCCGTTTTGGCTGAT 58.926 45.455 0.00 0.00 37.80 2.90
325 338 3.502211 CAGTAGTTCCGTTTTGGCTGATT 59.498 43.478 0.00 0.00 37.80 2.57
326 339 3.751698 AGTAGTTCCGTTTTGGCTGATTC 59.248 43.478 0.00 0.00 37.80 2.52
327 340 2.863809 AGTTCCGTTTTGGCTGATTCT 58.136 42.857 0.00 0.00 37.80 2.40
328 341 3.222603 AGTTCCGTTTTGGCTGATTCTT 58.777 40.909 0.00 0.00 37.80 2.52
414 445 5.666969 TGGCACAATACGATGCTTAATAC 57.333 39.130 0.00 0.00 41.74 1.89
424 486 4.804139 ACGATGCTTAATACTCTGTTTCGG 59.196 41.667 0.00 0.00 0.00 4.30
429 491 1.739067 AATACTCTGTTTCGGGCTGC 58.261 50.000 0.00 0.00 0.00 5.25
437 499 0.741221 GTTTCGGGCTGCGAGAGAAT 60.741 55.000 0.00 0.00 0.00 2.40
471 533 4.823790 GGTGAGCCGTTTTCTTAGAAAA 57.176 40.909 15.24 15.24 0.00 2.29
472 534 4.784329 GGTGAGCCGTTTTCTTAGAAAAG 58.216 43.478 19.01 10.55 0.00 2.27
473 535 4.514066 GGTGAGCCGTTTTCTTAGAAAAGA 59.486 41.667 19.01 0.00 40.03 2.52
494 556 9.628500 AAAAGAAACTAGAGTAAACCAATCTGT 57.372 29.630 0.00 0.00 0.00 3.41
495 557 8.608844 AAGAAACTAGAGTAAACCAATCTGTG 57.391 34.615 0.00 0.00 0.00 3.66
496 558 7.963532 AGAAACTAGAGTAAACCAATCTGTGA 58.036 34.615 0.00 0.00 0.00 3.58
497 559 8.598041 AGAAACTAGAGTAAACCAATCTGTGAT 58.402 33.333 0.00 0.00 0.00 3.06
498 560 9.220767 GAAACTAGAGTAAACCAATCTGTGATT 57.779 33.333 0.00 0.00 0.00 2.57
499 561 8.553459 AACTAGAGTAAACCAATCTGTGATTG 57.447 34.615 11.95 11.95 0.00 2.67
511 573 5.909621 ATCTGTGATTGGATGTTTGAAGG 57.090 39.130 0.00 0.00 0.00 3.46
512 574 4.081406 TCTGTGATTGGATGTTTGAAGGG 58.919 43.478 0.00 0.00 0.00 3.95
513 575 4.081406 CTGTGATTGGATGTTTGAAGGGA 58.919 43.478 0.00 0.00 0.00 4.20
514 576 3.826157 TGTGATTGGATGTTTGAAGGGAC 59.174 43.478 0.00 0.00 0.00 4.46
515 577 3.826157 GTGATTGGATGTTTGAAGGGACA 59.174 43.478 0.00 0.00 0.00 4.02
516 578 4.081406 TGATTGGATGTTTGAAGGGACAG 58.919 43.478 0.00 0.00 0.00 3.51
517 579 3.593442 TTGGATGTTTGAAGGGACAGT 57.407 42.857 0.00 0.00 0.00 3.55
518 580 2.862541 TGGATGTTTGAAGGGACAGTG 58.137 47.619 0.00 0.00 0.00 3.66
519 581 2.162681 GGATGTTTGAAGGGACAGTGG 58.837 52.381 0.00 0.00 0.00 4.00
520 582 2.489073 GGATGTTTGAAGGGACAGTGGT 60.489 50.000 0.00 0.00 0.00 4.16
521 583 3.244770 GGATGTTTGAAGGGACAGTGGTA 60.245 47.826 0.00 0.00 0.00 3.25
522 584 4.567747 GGATGTTTGAAGGGACAGTGGTAT 60.568 45.833 0.00 0.00 0.00 2.73
523 585 4.447138 TGTTTGAAGGGACAGTGGTATT 57.553 40.909 0.00 0.00 0.00 1.89
524 586 4.394729 TGTTTGAAGGGACAGTGGTATTC 58.605 43.478 0.00 0.00 0.00 1.75
525 587 4.104102 TGTTTGAAGGGACAGTGGTATTCT 59.896 41.667 0.00 0.00 0.00 2.40
526 588 4.553330 TTGAAGGGACAGTGGTATTCTC 57.447 45.455 0.00 0.00 0.00 2.87
527 589 3.516586 TGAAGGGACAGTGGTATTCTCA 58.483 45.455 0.00 0.00 0.00 3.27
528 590 3.260884 TGAAGGGACAGTGGTATTCTCAC 59.739 47.826 0.00 0.00 35.51 3.51
529 591 2.188817 AGGGACAGTGGTATTCTCACC 58.811 52.381 0.00 0.00 39.20 4.02
530 592 2.188817 GGGACAGTGGTATTCTCACCT 58.811 52.381 0.00 0.00 39.50 4.00
531 593 2.168728 GGGACAGTGGTATTCTCACCTC 59.831 54.545 0.00 0.00 39.50 3.85
532 594 2.832129 GGACAGTGGTATTCTCACCTCA 59.168 50.000 0.00 0.00 39.50 3.86
533 595 3.452627 GGACAGTGGTATTCTCACCTCAT 59.547 47.826 0.00 0.00 39.50 2.90
534 596 4.442192 GGACAGTGGTATTCTCACCTCATC 60.442 50.000 0.00 0.00 39.50 2.92
535 597 4.096681 ACAGTGGTATTCTCACCTCATCA 58.903 43.478 0.00 0.00 39.50 3.07
536 598 4.161189 ACAGTGGTATTCTCACCTCATCAG 59.839 45.833 0.00 0.00 39.50 2.90
537 599 4.403752 CAGTGGTATTCTCACCTCATCAGA 59.596 45.833 0.00 0.00 39.50 3.27
538 600 5.070180 CAGTGGTATTCTCACCTCATCAGAT 59.930 44.000 0.00 0.00 39.50 2.90
539 601 5.664908 AGTGGTATTCTCACCTCATCAGATT 59.335 40.000 0.00 0.00 39.50 2.40
540 602 5.988561 GTGGTATTCTCACCTCATCAGATTC 59.011 44.000 0.00 0.00 39.50 2.52
541 603 5.662657 TGGTATTCTCACCTCATCAGATTCA 59.337 40.000 0.00 0.00 39.50 2.57
542 604 6.156775 TGGTATTCTCACCTCATCAGATTCAA 59.843 38.462 0.00 0.00 39.50 2.69
543 605 6.705381 GGTATTCTCACCTCATCAGATTCAAG 59.295 42.308 0.00 0.00 35.55 3.02
544 606 5.752036 TTCTCACCTCATCAGATTCAAGT 57.248 39.130 0.00 0.00 0.00 3.16
545 607 5.336150 TCTCACCTCATCAGATTCAAGTC 57.664 43.478 0.00 0.00 0.00 3.01
546 608 4.161189 TCTCACCTCATCAGATTCAAGTCC 59.839 45.833 0.00 0.00 0.00 3.85
547 609 4.099633 TCACCTCATCAGATTCAAGTCCT 58.900 43.478 0.00 0.00 0.00 3.85
548 610 4.081254 TCACCTCATCAGATTCAAGTCCTG 60.081 45.833 0.00 0.00 0.00 3.86
549 611 4.081254 CACCTCATCAGATTCAAGTCCTGA 60.081 45.833 0.00 0.00 40.68 3.86
550 612 4.720773 ACCTCATCAGATTCAAGTCCTGAT 59.279 41.667 0.00 0.00 45.47 2.90
553 615 4.774660 ATCAGATTCAAGTCCTGATGCT 57.225 40.909 0.00 0.00 43.62 3.79
554 616 4.134379 TCAGATTCAAGTCCTGATGCTC 57.866 45.455 0.00 0.00 32.78 4.26
555 617 3.516700 TCAGATTCAAGTCCTGATGCTCA 59.483 43.478 0.00 0.00 32.78 4.26
556 618 3.622163 CAGATTCAAGTCCTGATGCTCAC 59.378 47.826 0.00 0.00 32.78 3.51
557 619 3.262660 AGATTCAAGTCCTGATGCTCACA 59.737 43.478 0.00 0.00 32.78 3.58
558 620 3.708403 TTCAAGTCCTGATGCTCACAT 57.292 42.857 0.00 0.00 39.98 3.21
559 621 3.708403 TCAAGTCCTGATGCTCACATT 57.292 42.857 0.00 0.00 36.35 2.71
560 622 4.824479 TCAAGTCCTGATGCTCACATTA 57.176 40.909 0.00 0.00 36.35 1.90
561 623 5.363562 TCAAGTCCTGATGCTCACATTAT 57.636 39.130 0.00 0.00 36.35 1.28
562 624 5.748402 TCAAGTCCTGATGCTCACATTATT 58.252 37.500 0.00 0.00 36.35 1.40
563 625 6.182627 TCAAGTCCTGATGCTCACATTATTT 58.817 36.000 0.00 0.00 36.35 1.40
564 626 6.317140 TCAAGTCCTGATGCTCACATTATTTC 59.683 38.462 0.00 0.00 36.35 2.17
565 627 5.999044 AGTCCTGATGCTCACATTATTTCT 58.001 37.500 0.00 0.00 36.35 2.52
566 628 5.821470 AGTCCTGATGCTCACATTATTTCTG 59.179 40.000 0.00 0.00 36.35 3.02
567 629 5.008415 GTCCTGATGCTCACATTATTTCTGG 59.992 44.000 0.00 0.00 36.35 3.86
568 630 5.104402 TCCTGATGCTCACATTATTTCTGGA 60.104 40.000 0.00 0.00 36.35 3.86
569 631 5.768662 CCTGATGCTCACATTATTTCTGGAT 59.231 40.000 0.00 0.00 36.35 3.41
570 632 6.264744 CCTGATGCTCACATTATTTCTGGATT 59.735 38.462 0.00 0.00 36.35 3.01
571 633 7.201884 CCTGATGCTCACATTATTTCTGGATTT 60.202 37.037 0.00 0.00 36.35 2.17
572 634 8.750515 TGATGCTCACATTATTTCTGGATTTA 57.249 30.769 0.00 0.00 36.35 1.40
573 635 9.358406 TGATGCTCACATTATTTCTGGATTTAT 57.642 29.630 0.00 0.00 36.35 1.40
589 651 9.709495 TCTGGATTTATTTCAGAATTTTTGGTG 57.291 29.630 0.00 0.00 34.97 4.17
590 652 9.709495 CTGGATTTATTTCAGAATTTTTGGTGA 57.291 29.630 0.00 0.00 0.00 4.02
593 655 9.977762 GATTTATTTCAGAATTTTTGGTGATGC 57.022 29.630 0.00 0.00 0.00 3.91
594 656 7.579589 TTATTTCAGAATTTTTGGTGATGCG 57.420 32.000 0.00 0.00 0.00 4.73
595 657 2.945278 TCAGAATTTTTGGTGATGCGC 58.055 42.857 0.00 0.00 0.00 6.09
596 658 2.557924 TCAGAATTTTTGGTGATGCGCT 59.442 40.909 9.73 0.00 0.00 5.92
597 659 3.005684 TCAGAATTTTTGGTGATGCGCTT 59.994 39.130 9.73 0.55 0.00 4.68
598 660 3.742369 CAGAATTTTTGGTGATGCGCTTT 59.258 39.130 9.73 0.00 0.00 3.51
599 661 3.989817 AGAATTTTTGGTGATGCGCTTTC 59.010 39.130 9.73 6.46 0.00 2.62
600 662 2.879002 TTTTTGGTGATGCGCTTTCA 57.121 40.000 9.73 9.39 0.00 2.69
601 663 2.420628 TTTTGGTGATGCGCTTTCAG 57.579 45.000 9.73 0.00 0.00 3.02
602 664 1.317613 TTTGGTGATGCGCTTTCAGT 58.682 45.000 9.73 0.00 0.00 3.41
603 665 0.592637 TTGGTGATGCGCTTTCAGTG 59.407 50.000 9.73 0.00 0.00 3.66
604 666 1.236616 TGGTGATGCGCTTTCAGTGG 61.237 55.000 9.73 0.00 0.00 4.00
605 667 1.503542 GTGATGCGCTTTCAGTGGG 59.496 57.895 9.73 0.00 0.00 4.61
606 668 0.955428 GTGATGCGCTTTCAGTGGGA 60.955 55.000 9.73 0.00 0.00 4.37
607 669 0.674581 TGATGCGCTTTCAGTGGGAG 60.675 55.000 9.73 0.00 0.00 4.30
608 670 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
609 671 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
610 672 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
611 673 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
612 674 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
613 675 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
614 676 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
615 677 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
616 678 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
617 679 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
618 680 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
619 681 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
639 701 3.337619 GACGACGAGGCGCCTATA 58.662 61.111 32.97 0.00 33.86 1.31
640 702 1.650912 GACGACGAGGCGCCTATAA 59.349 57.895 32.97 0.00 33.86 0.98
641 703 0.240411 GACGACGAGGCGCCTATAAT 59.760 55.000 32.97 15.46 33.86 1.28
642 704 0.039437 ACGACGAGGCGCCTATAATG 60.039 55.000 32.97 20.45 33.86 1.90
643 705 0.240145 CGACGAGGCGCCTATAATGA 59.760 55.000 32.97 0.00 0.00 2.57
644 706 1.699343 GACGAGGCGCCTATAATGAC 58.301 55.000 32.97 14.51 0.00 3.06
645 707 1.269998 GACGAGGCGCCTATAATGACT 59.730 52.381 32.97 3.02 0.00 3.41
646 708 1.687123 ACGAGGCGCCTATAATGACTT 59.313 47.619 32.97 5.44 0.00 3.01
647 709 2.288273 ACGAGGCGCCTATAATGACTTC 60.288 50.000 32.97 12.25 0.00 3.01
648 710 2.029828 CGAGGCGCCTATAATGACTTCT 60.030 50.000 32.97 1.08 0.00 2.85
649 711 3.553096 CGAGGCGCCTATAATGACTTCTT 60.553 47.826 32.97 0.50 0.00 2.52
650 712 4.321008 CGAGGCGCCTATAATGACTTCTTA 60.321 45.833 32.97 0.00 0.00 2.10
651 713 5.539048 GAGGCGCCTATAATGACTTCTTAA 58.461 41.667 32.97 0.00 0.00 1.85
652 714 5.925509 AGGCGCCTATAATGACTTCTTAAA 58.074 37.500 31.86 0.00 0.00 1.52
653 715 6.534634 AGGCGCCTATAATGACTTCTTAAAT 58.465 36.000 31.86 0.00 0.00 1.40
654 716 6.651225 AGGCGCCTATAATGACTTCTTAAATC 59.349 38.462 31.86 0.00 0.00 2.17
655 717 6.651225 GGCGCCTATAATGACTTCTTAAATCT 59.349 38.462 22.15 0.00 0.00 2.40
656 718 7.148557 GGCGCCTATAATGACTTCTTAAATCTC 60.149 40.741 22.15 0.00 0.00 2.75
657 719 7.385205 GCGCCTATAATGACTTCTTAAATCTCA 59.615 37.037 0.00 0.00 0.00 3.27
658 720 9.261180 CGCCTATAATGACTTCTTAAATCTCAA 57.739 33.333 0.00 0.00 0.00 3.02
669 731 9.282569 ACTTCTTAAATCTCAAGATGATATGCC 57.717 33.333 0.00 0.00 34.49 4.40
670 732 7.895975 TCTTAAATCTCAAGATGATATGCCG 57.104 36.000 0.00 0.00 34.49 5.69
671 733 6.875726 TCTTAAATCTCAAGATGATATGCCGG 59.124 38.462 0.00 0.00 34.49 6.13
672 734 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
673 735 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
674 736 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
675 737 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
676 738 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
677 739 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
678 740 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
679 741 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
680 742 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
681 743 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
682 744 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
683 745 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
684 746 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
685 747 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
686 748 1.883732 CCGGCTCAGTCTCTCGAAA 59.116 57.895 0.00 0.00 0.00 3.46
687 749 0.243907 CCGGCTCAGTCTCTCGAAAA 59.756 55.000 0.00 0.00 0.00 2.29
688 750 1.134965 CCGGCTCAGTCTCTCGAAAAT 60.135 52.381 0.00 0.00 0.00 1.82
689 751 1.923204 CGGCTCAGTCTCTCGAAAATG 59.077 52.381 0.00 0.00 0.00 2.32
690 752 1.663135 GGCTCAGTCTCTCGAAAATGC 59.337 52.381 0.00 0.00 0.00 3.56
691 753 2.615869 GCTCAGTCTCTCGAAAATGCT 58.384 47.619 0.00 0.00 0.00 3.79
692 754 2.999355 GCTCAGTCTCTCGAAAATGCTT 59.001 45.455 0.00 0.00 0.00 3.91
693 755 4.177026 GCTCAGTCTCTCGAAAATGCTTA 58.823 43.478 0.00 0.00 0.00 3.09
694 756 4.808364 GCTCAGTCTCTCGAAAATGCTTAT 59.192 41.667 0.00 0.00 0.00 1.73
695 757 5.980116 GCTCAGTCTCTCGAAAATGCTTATA 59.020 40.000 0.00 0.00 0.00 0.98
696 758 6.143758 GCTCAGTCTCTCGAAAATGCTTATAG 59.856 42.308 0.00 0.00 0.00 1.31
697 759 6.507900 TCAGTCTCTCGAAAATGCTTATAGG 58.492 40.000 0.00 0.00 0.00 2.57
698 760 5.694006 CAGTCTCTCGAAAATGCTTATAGGG 59.306 44.000 0.00 0.00 0.00 3.53
699 761 5.598830 AGTCTCTCGAAAATGCTTATAGGGA 59.401 40.000 0.00 0.00 0.00 4.20
700 762 6.268847 AGTCTCTCGAAAATGCTTATAGGGAT 59.731 38.462 0.00 0.00 0.00 3.85
701 763 7.451877 AGTCTCTCGAAAATGCTTATAGGGATA 59.548 37.037 0.00 0.00 0.00 2.59
702 764 7.757624 GTCTCTCGAAAATGCTTATAGGGATAG 59.242 40.741 0.00 0.00 0.00 2.08
703 765 6.936279 TCTCGAAAATGCTTATAGGGATAGG 58.064 40.000 0.00 0.00 0.00 2.57
704 766 6.049955 TCGAAAATGCTTATAGGGATAGGG 57.950 41.667 0.00 0.00 0.00 3.53
705 767 5.546499 TCGAAAATGCTTATAGGGATAGGGT 59.454 40.000 0.00 0.00 0.00 4.34
706 768 5.643777 CGAAAATGCTTATAGGGATAGGGTG 59.356 44.000 0.00 0.00 0.00 4.61
707 769 6.530601 AAAATGCTTATAGGGATAGGGTGT 57.469 37.500 0.00 0.00 0.00 4.16
708 770 5.505181 AATGCTTATAGGGATAGGGTGTG 57.495 43.478 0.00 0.00 0.00 3.82
709 771 2.637872 TGCTTATAGGGATAGGGTGTGC 59.362 50.000 0.00 0.00 0.00 4.57
710 772 2.353803 GCTTATAGGGATAGGGTGTGCG 60.354 54.545 0.00 0.00 0.00 5.34
711 773 2.688902 TATAGGGATAGGGTGTGCGT 57.311 50.000 0.00 0.00 0.00 5.24
712 774 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
713 775 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
714 776 0.324923 AGGGATAGGGTGTGCGTGTA 60.325 55.000 0.00 0.00 0.00 2.90
715 777 0.756903 GGGATAGGGTGTGCGTGTAT 59.243 55.000 0.00 0.00 0.00 2.29
716 778 1.965643 GGGATAGGGTGTGCGTGTATA 59.034 52.381 0.00 0.00 0.00 1.47
717 779 2.288640 GGGATAGGGTGTGCGTGTATAC 60.289 54.545 0.00 0.00 0.00 1.47
718 780 2.363038 GGATAGGGTGTGCGTGTATACA 59.637 50.000 0.08 0.08 0.00 2.29
719 781 3.006537 GGATAGGGTGTGCGTGTATACAT 59.993 47.826 9.18 0.00 0.00 2.29
720 782 4.502604 GGATAGGGTGTGCGTGTATACATT 60.503 45.833 9.18 0.00 0.00 2.71
721 783 3.343941 AGGGTGTGCGTGTATACATTT 57.656 42.857 9.18 0.00 0.00 2.32
722 784 4.475051 AGGGTGTGCGTGTATACATTTA 57.525 40.909 9.18 0.00 0.00 1.40
723 785 5.031066 AGGGTGTGCGTGTATACATTTAT 57.969 39.130 9.18 0.00 0.00 1.40
724 786 6.164417 AGGGTGTGCGTGTATACATTTATA 57.836 37.500 9.18 0.00 0.00 0.98
725 787 6.220930 AGGGTGTGCGTGTATACATTTATAG 58.779 40.000 9.18 0.00 0.00 1.31
726 788 5.407387 GGGTGTGCGTGTATACATTTATAGG 59.593 44.000 9.18 0.00 0.00 2.57
727 789 5.407387 GGTGTGCGTGTATACATTTATAGGG 59.593 44.000 9.18 0.00 0.00 3.53
728 790 5.407387 GTGTGCGTGTATACATTTATAGGGG 59.593 44.000 9.18 0.00 0.00 4.79
729 791 4.933400 GTGCGTGTATACATTTATAGGGGG 59.067 45.833 9.18 0.00 0.00 5.40
730 792 4.594062 TGCGTGTATACATTTATAGGGGGT 59.406 41.667 9.18 0.00 0.00 4.95
731 793 4.933400 GCGTGTATACATTTATAGGGGGTG 59.067 45.833 9.18 0.00 0.00 4.61
732 794 5.279607 GCGTGTATACATTTATAGGGGGTGA 60.280 44.000 9.18 0.00 0.00 4.02
733 795 6.742082 GCGTGTATACATTTATAGGGGGTGAA 60.742 42.308 9.18 0.00 0.00 3.18
734 796 7.391620 CGTGTATACATTTATAGGGGGTGAAT 58.608 38.462 9.18 0.00 0.00 2.57
735 797 7.333423 CGTGTATACATTTATAGGGGGTGAATG 59.667 40.741 9.18 0.00 34.69 2.67
736 798 8.161425 GTGTATACATTTATAGGGGGTGAATGT 58.839 37.037 9.18 5.50 41.97 2.71
737 799 9.395068 TGTATACATTTATAGGGGGTGAATGTA 57.605 33.333 0.08 8.98 43.32 2.29
740 802 6.010219 ACATTTATAGGGGGTGAATGTATGC 58.990 40.000 0.00 0.00 38.69 3.14
741 803 2.859165 ATAGGGGGTGAATGTATGCG 57.141 50.000 0.00 0.00 0.00 4.73
742 804 0.107831 TAGGGGGTGAATGTATGCGC 59.892 55.000 0.00 0.00 0.00 6.09
743 805 2.542907 GGGGGTGAATGTATGCGCG 61.543 63.158 0.00 0.00 0.00 6.86
744 806 1.817941 GGGGTGAATGTATGCGCGT 60.818 57.895 8.43 7.55 0.00 6.01
745 807 1.641677 GGGTGAATGTATGCGCGTC 59.358 57.895 4.79 0.00 0.00 5.19
746 808 0.810031 GGGTGAATGTATGCGCGTCT 60.810 55.000 4.79 0.00 0.00 4.18
747 809 0.301687 GGTGAATGTATGCGCGTCTG 59.698 55.000 4.79 0.00 0.00 3.51
748 810 0.999406 GTGAATGTATGCGCGTCTGT 59.001 50.000 4.79 0.00 0.00 3.41
749 811 2.190161 GTGAATGTATGCGCGTCTGTA 58.810 47.619 4.79 0.00 0.00 2.74
750 812 2.794910 GTGAATGTATGCGCGTCTGTAT 59.205 45.455 4.79 0.00 0.00 2.29
751 813 2.794350 TGAATGTATGCGCGTCTGTATG 59.206 45.455 4.79 0.00 0.00 2.39
752 814 2.793278 ATGTATGCGCGTCTGTATGA 57.207 45.000 4.79 0.00 0.00 2.15
753 815 2.119671 TGTATGCGCGTCTGTATGAG 57.880 50.000 4.79 0.00 0.00 2.90
754 816 0.778815 GTATGCGCGTCTGTATGAGC 59.221 55.000 4.79 0.00 37.87 4.26
757 819 2.278206 CGCGTCTGTATGAGCGCT 60.278 61.111 11.27 11.27 45.94 5.92
758 820 1.874019 CGCGTCTGTATGAGCGCTT 60.874 57.895 13.26 0.00 45.94 4.68
759 821 1.633171 GCGTCTGTATGAGCGCTTG 59.367 57.895 13.26 0.00 39.89 4.01
760 822 1.633171 CGTCTGTATGAGCGCTTGC 59.367 57.895 13.26 0.00 39.58 4.01
761 823 1.633171 GTCTGTATGAGCGCTTGCG 59.367 57.895 13.26 10.90 45.69 4.85
762 824 1.078759 GTCTGTATGAGCGCTTGCGT 61.079 55.000 13.26 3.24 45.69 5.24
763 825 0.802222 TCTGTATGAGCGCTTGCGTC 60.802 55.000 13.26 12.36 45.69 5.19
764 826 0.803768 CTGTATGAGCGCTTGCGTCT 60.804 55.000 13.26 13.17 45.69 4.18
765 827 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
766 828 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
767 829 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
768 830 0.179100 ATGAGCGCTTGCGTCTGTAT 60.179 50.000 13.26 7.95 45.69 2.29
769 831 0.802222 TGAGCGCTTGCGTCTGTATC 60.802 55.000 13.26 0.00 45.69 2.24
770 832 1.802300 GAGCGCTTGCGTCTGTATCG 61.802 60.000 13.26 0.00 45.69 2.92
771 833 2.158959 GCGCTTGCGTCTGTATCGT 61.159 57.895 16.38 0.00 0.00 3.73
772 834 1.625870 CGCTTGCGTCTGTATCGTG 59.374 57.895 6.86 0.00 0.00 4.35
773 835 1.071019 CGCTTGCGTCTGTATCGTGT 61.071 55.000 6.86 0.00 0.00 4.49
774 836 1.068474 GCTTGCGTCTGTATCGTGTT 58.932 50.000 0.00 0.00 0.00 3.32
778 840 4.376615 GCTTGCGTCTGTATCGTGTTAAAA 60.377 41.667 0.00 0.00 0.00 1.52
809 871 7.124901 CCCAGATAGCAGCCTAATATCTTCTAA 59.875 40.741 0.17 0.00 34.74 2.10
810 872 8.196771 CCAGATAGCAGCCTAATATCTTCTAAG 58.803 40.741 0.17 0.00 34.74 2.18
812 874 9.540538 AGATAGCAGCCTAATATCTTCTAAGAA 57.459 33.333 0.00 0.00 38.77 2.52
815 877 8.900983 AGCAGCCTAATATCTTCTAAGAAAAG 57.099 34.615 0.00 0.00 38.77 2.27
816 878 7.936301 AGCAGCCTAATATCTTCTAAGAAAAGG 59.064 37.037 0.00 3.33 38.77 3.11
817 879 7.308288 GCAGCCTAATATCTTCTAAGAAAAGGC 60.308 40.741 19.76 19.76 42.99 4.35
818 880 7.174080 CAGCCTAATATCTTCTAAGAAAAGGCC 59.826 40.741 21.76 0.00 43.30 5.19
819 881 6.431543 GCCTAATATCTTCTAAGAAAAGGCCC 59.568 42.308 18.12 0.00 40.19 5.80
820 882 7.693039 GCCTAATATCTTCTAAGAAAAGGCCCT 60.693 40.741 18.12 0.00 40.19 5.19
821 883 7.663493 CCTAATATCTTCTAAGAAAAGGCCCTG 59.337 40.741 0.00 0.00 38.77 4.45
822 884 3.721087 TCTTCTAAGAAAAGGCCCTGG 57.279 47.619 0.00 0.00 30.73 4.45
823 885 2.986728 TCTTCTAAGAAAAGGCCCTGGT 59.013 45.455 0.00 0.00 30.73 4.00
824 886 3.397955 TCTTCTAAGAAAAGGCCCTGGTT 59.602 43.478 0.00 0.00 30.73 3.67
825 887 3.895704 TCTAAGAAAAGGCCCTGGTTT 57.104 42.857 0.00 0.00 0.00 3.27
826 888 4.193240 TCTAAGAAAAGGCCCTGGTTTT 57.807 40.909 0.00 0.00 0.00 2.43
827 889 4.149598 TCTAAGAAAAGGCCCTGGTTTTC 58.850 43.478 16.38 16.38 41.18 2.29
828 890 2.775490 AGAAAAGGCCCTGGTTTTCT 57.225 45.000 19.55 19.55 44.49 2.52
829 891 3.046283 AGAAAAGGCCCTGGTTTTCTT 57.954 42.857 19.55 8.50 46.20 2.52
830 892 3.384168 AGAAAAGGCCCTGGTTTTCTTT 58.616 40.909 19.55 4.81 46.20 2.52
831 893 3.780294 AGAAAAGGCCCTGGTTTTCTTTT 59.220 39.130 19.55 8.52 46.20 2.27
832 894 4.227300 AGAAAAGGCCCTGGTTTTCTTTTT 59.773 37.500 19.55 7.89 46.20 1.94
833 895 3.558931 AAGGCCCTGGTTTTCTTTTTG 57.441 42.857 0.00 0.00 0.00 2.44
834 896 2.758130 AGGCCCTGGTTTTCTTTTTGA 58.242 42.857 0.00 0.00 0.00 2.69
835 897 2.700371 AGGCCCTGGTTTTCTTTTTGAG 59.300 45.455 0.00 0.00 0.00 3.02
836 898 2.434336 GGCCCTGGTTTTCTTTTTGAGT 59.566 45.455 0.00 0.00 0.00 3.41
837 899 3.118408 GGCCCTGGTTTTCTTTTTGAGTT 60.118 43.478 0.00 0.00 0.00 3.01
838 900 3.871006 GCCCTGGTTTTCTTTTTGAGTTG 59.129 43.478 0.00 0.00 0.00 3.16
839 901 4.382577 GCCCTGGTTTTCTTTTTGAGTTGA 60.383 41.667 0.00 0.00 0.00 3.18
840 902 5.684813 GCCCTGGTTTTCTTTTTGAGTTGAT 60.685 40.000 0.00 0.00 0.00 2.57
984 1046 2.879103 TTTTCCGCTTTCCTCCATCT 57.121 45.000 0.00 0.00 0.00 2.90
1210 1275 2.119801 TTTCAATCCTGCTGCTCCTC 57.880 50.000 0.00 0.00 0.00 3.71
1387 1452 4.523813 CAGTTCGTTGCGTTTCTGTTATT 58.476 39.130 0.00 0.00 0.00 1.40
1468 1533 4.049546 TCTAATGCTGGAATTGCAATGC 57.950 40.909 13.82 11.40 44.01 3.56
1502 1567 5.645929 TGAGAGACTAGTCAGTTGAGATGTC 59.354 44.000 24.44 9.67 34.21 3.06
1539 1604 3.307674 TGACATTTCTGCGCAATTTGTC 58.692 40.909 24.23 24.23 0.00 3.18
1587 1653 6.542005 TCATTAGTTCATTACATTGGTGCGAT 59.458 34.615 0.00 0.00 0.00 4.58
1607 1673 1.588674 TGTGTCGTAAAGCTGTTGGG 58.411 50.000 0.00 0.00 0.00 4.12
1608 1674 0.237498 GTGTCGTAAAGCTGTTGGGC 59.763 55.000 0.00 0.00 0.00 5.36
1621 1687 4.884164 AGCTGTTGGGCTTATCAGTTTATC 59.116 41.667 0.00 0.00 39.86 1.75
1790 1861 7.628769 TGCAAGTAAGAGCAAATGATCAATA 57.371 32.000 0.00 0.00 37.90 1.90
1930 2001 4.249638 AGGTTGCAGAATTATTGGGCTA 57.750 40.909 0.00 0.00 0.00 3.93
1934 2005 6.156775 AGGTTGCAGAATTATTGGGCTAATTT 59.843 34.615 0.08 0.00 32.74 1.82
1937 2008 8.390354 GTTGCAGAATTATTGGGCTAATTTTTC 58.610 33.333 0.08 5.85 32.74 2.29
1993 2064 4.584743 GTCAGTTTCCAAAATTCACCCTCT 59.415 41.667 0.00 0.00 0.00 3.69
2011 2082 8.938883 TCACCCTCTGAATATTTAAAGCTATCT 58.061 33.333 0.00 0.00 0.00 1.98
2100 2171 8.348983 ACTAACGTATATGCTGTGTAATGAAC 57.651 34.615 0.00 0.00 0.00 3.18
2566 2642 0.749818 TGTCGTTTTCCAGCCTTGCA 60.750 50.000 0.00 0.00 0.00 4.08
2576 2652 3.489355 TCCAGCCTTGCATGTATATTGG 58.511 45.455 0.00 0.00 0.00 3.16
2607 2683 8.259194 GTCGTTTGTGTGTTTTAAATTCATCTG 58.741 33.333 0.00 0.00 0.00 2.90
2641 2717 4.901868 TCCTACAAGACAAAAACGCCTAT 58.098 39.130 0.00 0.00 0.00 2.57
2903 2980 8.049117 TGGATCTTGTTTATCTGTTAGATGCTT 58.951 33.333 0.00 0.00 35.37 3.91
3020 3098 7.413877 GCTGAAATGTCCTTTTCTCTGTATCAG 60.414 40.741 7.05 0.00 36.71 2.90
3048 3126 3.232213 TCTCGTGCCTAATCTGAACAC 57.768 47.619 0.00 0.00 0.00 3.32
3170 3248 6.939730 TCATGCTGACAGACCAGTTATTTTTA 59.060 34.615 6.65 0.00 36.57 1.52
3171 3249 7.446931 TCATGCTGACAGACCAGTTATTTTTAA 59.553 33.333 6.65 0.00 36.57 1.52
3243 3322 7.186804 CAGACTACGGCAGGTTTATTATTTTG 58.813 38.462 0.00 0.00 0.00 2.44
3259 3338 3.579335 TTTTGTATTTGGCCGGCTTAC 57.421 42.857 28.56 21.23 0.00 2.34
3280 3359 7.254556 GCTTACGTTTGTCCTACATAATTACCC 60.255 40.741 0.00 0.00 0.00 3.69
3348 3428 3.007398 CGTCCAAATTTCCCCAATTGGAA 59.993 43.478 26.60 12.69 42.62 3.53
3357 3437 1.908619 CCCCAATTGGAAAAGGAAGGG 59.091 52.381 26.60 10.93 37.39 3.95
3360 3440 1.066929 CAATTGGAAAAGGAAGGGCGG 60.067 52.381 0.00 0.00 0.00 6.13
3361 3441 0.114364 ATTGGAAAAGGAAGGGCGGT 59.886 50.000 0.00 0.00 0.00 5.68
3362 3442 0.772384 TTGGAAAAGGAAGGGCGGTA 59.228 50.000 0.00 0.00 0.00 4.02
3363 3443 0.037160 TGGAAAAGGAAGGGCGGTAC 59.963 55.000 0.00 0.00 0.00 3.34
3364 3444 0.327259 GGAAAAGGAAGGGCGGTACT 59.673 55.000 0.00 0.00 0.00 2.73
3365 3445 1.556451 GGAAAAGGAAGGGCGGTACTA 59.444 52.381 0.00 0.00 0.00 1.82
3366 3446 2.625737 GAAAAGGAAGGGCGGTACTAC 58.374 52.381 0.00 0.00 0.00 2.73
3417 3500 5.741011 TCTTTACGTGCTATCTCCCAATTT 58.259 37.500 0.00 0.00 0.00 1.82
3435 3518 3.827008 TTTTGCCATTTGCCAACTACA 57.173 38.095 0.00 0.00 40.16 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.683832 ACTCCGTACAGTGCATAATTCTC 58.316 43.478 0.00 0.00 0.00 2.87
23 24 7.694367 CGATAACTATGATTGAGATGTACTCCG 59.306 40.741 0.00 0.00 44.34 4.63
24 25 8.731605 TCGATAACTATGATTGAGATGTACTCC 58.268 37.037 0.00 0.00 44.34 3.85
33 34 8.715998 CCTCCAAAATCGATAACTATGATTGAG 58.284 37.037 0.00 0.00 32.91 3.02
99 100 8.680039 AAGAGATCATGTACAGTACTACCTAC 57.320 38.462 12.07 0.00 0.00 3.18
118 119 1.687123 CGGTGGGGTCGATAAAGAGAT 59.313 52.381 0.00 0.00 0.00 2.75
147 148 1.027357 ATCTAGCGGCTGCAAATTGG 58.973 50.000 21.93 0.19 46.23 3.16
149 150 2.227388 GCATATCTAGCGGCTGCAAATT 59.773 45.455 21.93 0.35 46.23 1.82
166 167 7.397192 TCCTCTGTAGCTGTCATATTATGCATA 59.603 37.037 1.16 1.16 0.00 3.14
190 191 3.263425 TGTAGAAGTTCCCAGGACATTCC 59.737 47.826 0.00 0.00 36.58 3.01
201 202 8.357796 AGTAAAAACGTTACTGTAGAAGTTCC 57.642 34.615 0.00 0.00 40.56 3.62
265 275 1.475682 ACCCGAAGTCCACTCGAATAC 59.524 52.381 0.00 0.00 0.00 1.89
267 277 0.974383 AACCCGAAGTCCACTCGAAT 59.026 50.000 0.00 0.00 0.00 3.34
268 278 1.270550 GTAACCCGAAGTCCACTCGAA 59.729 52.381 0.00 0.00 0.00 3.71
273 286 4.328169 CGAAATAAGTAACCCGAAGTCCAC 59.672 45.833 0.00 0.00 0.00 4.02
280 293 1.471327 CGGCCGAAATAAGTAACCCGA 60.471 52.381 24.07 0.00 36.79 5.14
282 295 0.659427 GCGGCCGAAATAAGTAACCC 59.341 55.000 33.48 1.16 0.00 4.11
288 301 2.128035 CTACTGAGCGGCCGAAATAAG 58.872 52.381 33.48 18.39 0.00 1.73
295 308 2.202756 GGAACTACTGAGCGGCCG 60.203 66.667 24.05 24.05 0.00 6.13
299 312 1.459592 CCAAAACGGAACTACTGAGCG 59.540 52.381 0.00 0.00 36.56 5.03
301 314 2.480419 CAGCCAAAACGGAACTACTGAG 59.520 50.000 0.00 0.00 36.56 3.35
303 316 2.489971 TCAGCCAAAACGGAACTACTG 58.510 47.619 0.00 0.00 36.56 2.74
304 317 2.922740 TCAGCCAAAACGGAACTACT 57.077 45.000 0.00 0.00 36.56 2.57
305 318 3.751698 AGAATCAGCCAAAACGGAACTAC 59.248 43.478 0.00 0.00 36.56 2.73
306 319 4.015872 AGAATCAGCCAAAACGGAACTA 57.984 40.909 0.00 0.00 36.56 2.24
307 320 2.863809 AGAATCAGCCAAAACGGAACT 58.136 42.857 0.00 0.00 36.56 3.01
308 321 3.643159 AAGAATCAGCCAAAACGGAAC 57.357 42.857 0.00 0.00 36.56 3.62
309 322 4.647611 TCTAAGAATCAGCCAAAACGGAA 58.352 39.130 0.00 0.00 36.56 4.30
310 323 4.020573 TCTCTAAGAATCAGCCAAAACGGA 60.021 41.667 0.00 0.00 36.56 4.69
311 324 4.253685 TCTCTAAGAATCAGCCAAAACGG 58.746 43.478 0.00 0.00 38.11 4.44
312 325 5.862924 TTCTCTAAGAATCAGCCAAAACG 57.137 39.130 0.00 0.00 0.00 3.60
313 326 7.770897 TCCTATTCTCTAAGAATCAGCCAAAAC 59.229 37.037 5.50 0.00 40.75 2.43
314 327 7.770897 GTCCTATTCTCTAAGAATCAGCCAAAA 59.229 37.037 5.50 0.00 40.75 2.44
315 328 7.275920 GTCCTATTCTCTAAGAATCAGCCAAA 58.724 38.462 5.50 0.00 40.75 3.28
316 329 6.183361 GGTCCTATTCTCTAAGAATCAGCCAA 60.183 42.308 5.50 0.00 40.75 4.52
317 330 5.305644 GGTCCTATTCTCTAAGAATCAGCCA 59.694 44.000 5.50 0.00 40.75 4.75
318 331 5.542251 AGGTCCTATTCTCTAAGAATCAGCC 59.458 44.000 5.50 5.35 40.75 4.85
319 332 6.664428 AGGTCCTATTCTCTAAGAATCAGC 57.336 41.667 5.50 2.54 40.75 4.26
320 333 9.753674 AGATAGGTCCTATTCTCTAAGAATCAG 57.246 37.037 12.86 0.22 40.75 2.90
321 334 9.747898 GAGATAGGTCCTATTCTCTAAGAATCA 57.252 37.037 12.86 0.00 40.75 2.57
322 335 9.975218 AGAGATAGGTCCTATTCTCTAAGAATC 57.025 37.037 24.79 9.27 40.75 2.52
325 338 8.545472 GCTAGAGATAGGTCCTATTCTCTAAGA 58.455 40.741 27.20 18.13 35.49 2.10
326 339 8.548877 AGCTAGAGATAGGTCCTATTCTCTAAG 58.451 40.741 27.20 23.60 35.49 2.18
327 340 8.457585 AGCTAGAGATAGGTCCTATTCTCTAA 57.542 38.462 27.20 19.18 35.49 2.10
328 341 8.457585 AAGCTAGAGATAGGTCCTATTCTCTA 57.542 38.462 26.51 26.51 35.18 2.43
414 445 2.048222 TCGCAGCCCGAAACAGAG 60.048 61.111 0.00 0.00 44.21 3.35
451 513 5.668558 TCTTTTCTAAGAAAACGGCTCAC 57.331 39.130 0.00 0.00 37.45 3.51
469 531 9.057089 CACAGATTGGTTTACTCTAGTTTCTTT 57.943 33.333 0.00 0.00 0.00 2.52
470 532 8.429641 TCACAGATTGGTTTACTCTAGTTTCTT 58.570 33.333 0.00 0.00 0.00 2.52
471 533 7.963532 TCACAGATTGGTTTACTCTAGTTTCT 58.036 34.615 0.00 0.00 0.00 2.52
472 534 8.779354 ATCACAGATTGGTTTACTCTAGTTTC 57.221 34.615 0.00 0.00 0.00 2.78
473 535 9.003658 CAATCACAGATTGGTTTACTCTAGTTT 57.996 33.333 11.00 0.00 0.00 2.66
474 536 7.607991 CCAATCACAGATTGGTTTACTCTAGTT 59.392 37.037 24.00 0.00 42.63 2.24
475 537 7.038302 TCCAATCACAGATTGGTTTACTCTAGT 60.038 37.037 28.38 0.00 46.47 2.57
476 538 7.331026 TCCAATCACAGATTGGTTTACTCTAG 58.669 38.462 28.38 8.19 46.47 2.43
477 539 7.252612 TCCAATCACAGATTGGTTTACTCTA 57.747 36.000 28.38 11.68 46.47 2.43
478 540 6.126863 TCCAATCACAGATTGGTTTACTCT 57.873 37.500 28.38 0.00 46.47 3.24
479 541 6.375455 ACATCCAATCACAGATTGGTTTACTC 59.625 38.462 28.38 0.00 46.47 2.59
480 542 6.248433 ACATCCAATCACAGATTGGTTTACT 58.752 36.000 28.38 13.17 46.47 2.24
481 543 6.515272 ACATCCAATCACAGATTGGTTTAC 57.485 37.500 28.38 0.00 46.47 2.01
482 544 7.232330 TCAAACATCCAATCACAGATTGGTTTA 59.768 33.333 28.38 16.16 46.47 2.01
483 545 6.041865 TCAAACATCCAATCACAGATTGGTTT 59.958 34.615 28.38 21.26 46.47 3.27
484 546 5.539574 TCAAACATCCAATCACAGATTGGTT 59.460 36.000 28.38 21.33 46.47 3.67
485 547 5.078949 TCAAACATCCAATCACAGATTGGT 58.921 37.500 28.38 17.81 46.47 3.67
487 549 6.097356 CCTTCAAACATCCAATCACAGATTG 58.903 40.000 11.73 11.73 0.00 2.67
488 550 5.186409 CCCTTCAAACATCCAATCACAGATT 59.814 40.000 0.00 0.00 0.00 2.40
489 551 4.708421 CCCTTCAAACATCCAATCACAGAT 59.292 41.667 0.00 0.00 0.00 2.90
490 552 4.081406 CCCTTCAAACATCCAATCACAGA 58.919 43.478 0.00 0.00 0.00 3.41
491 553 4.081406 TCCCTTCAAACATCCAATCACAG 58.919 43.478 0.00 0.00 0.00 3.66
492 554 3.826157 GTCCCTTCAAACATCCAATCACA 59.174 43.478 0.00 0.00 0.00 3.58
493 555 3.826157 TGTCCCTTCAAACATCCAATCAC 59.174 43.478 0.00 0.00 0.00 3.06
494 556 4.081406 CTGTCCCTTCAAACATCCAATCA 58.919 43.478 0.00 0.00 0.00 2.57
495 557 4.082125 ACTGTCCCTTCAAACATCCAATC 58.918 43.478 0.00 0.00 0.00 2.67
496 558 3.828451 CACTGTCCCTTCAAACATCCAAT 59.172 43.478 0.00 0.00 0.00 3.16
497 559 3.221771 CACTGTCCCTTCAAACATCCAA 58.778 45.455 0.00 0.00 0.00 3.53
498 560 2.488891 CCACTGTCCCTTCAAACATCCA 60.489 50.000 0.00 0.00 0.00 3.41
499 561 2.162681 CCACTGTCCCTTCAAACATCC 58.837 52.381 0.00 0.00 0.00 3.51
500 562 2.863809 ACCACTGTCCCTTCAAACATC 58.136 47.619 0.00 0.00 0.00 3.06
501 563 4.657814 ATACCACTGTCCCTTCAAACAT 57.342 40.909 0.00 0.00 0.00 2.71
502 564 4.104102 AGAATACCACTGTCCCTTCAAACA 59.896 41.667 0.00 0.00 0.00 2.83
503 565 4.652822 AGAATACCACTGTCCCTTCAAAC 58.347 43.478 0.00 0.00 0.00 2.93
504 566 4.349636 TGAGAATACCACTGTCCCTTCAAA 59.650 41.667 0.00 0.00 0.00 2.69
505 567 3.907474 TGAGAATACCACTGTCCCTTCAA 59.093 43.478 0.00 0.00 0.00 2.69
506 568 3.260884 GTGAGAATACCACTGTCCCTTCA 59.739 47.826 0.00 0.00 0.00 3.02
507 569 3.369576 GGTGAGAATACCACTGTCCCTTC 60.370 52.174 0.00 0.00 40.54 3.46
508 570 2.572104 GGTGAGAATACCACTGTCCCTT 59.428 50.000 0.00 0.00 40.54 3.95
509 571 2.188817 GGTGAGAATACCACTGTCCCT 58.811 52.381 0.00 0.00 40.54 4.20
510 572 2.168728 GAGGTGAGAATACCACTGTCCC 59.831 54.545 0.00 0.00 43.37 4.46
511 573 2.832129 TGAGGTGAGAATACCACTGTCC 59.168 50.000 0.00 0.00 43.37 4.02
512 574 4.160439 TGATGAGGTGAGAATACCACTGTC 59.840 45.833 0.00 0.00 43.37 3.51
513 575 4.096681 TGATGAGGTGAGAATACCACTGT 58.903 43.478 0.00 0.00 43.37 3.55
514 576 4.403752 TCTGATGAGGTGAGAATACCACTG 59.596 45.833 0.00 0.00 43.37 3.66
515 577 4.614475 TCTGATGAGGTGAGAATACCACT 58.386 43.478 0.00 0.00 43.37 4.00
516 578 5.543507 ATCTGATGAGGTGAGAATACCAC 57.456 43.478 0.00 0.00 43.37 4.16
517 579 5.662657 TGAATCTGATGAGGTGAGAATACCA 59.337 40.000 0.00 0.00 43.37 3.25
518 580 6.166984 TGAATCTGATGAGGTGAGAATACC 57.833 41.667 0.00 0.00 41.17 2.73
519 581 7.271511 ACTTGAATCTGATGAGGTGAGAATAC 58.728 38.462 0.00 0.00 0.00 1.89
520 582 7.418368 GGACTTGAATCTGATGAGGTGAGAATA 60.418 40.741 0.00 0.00 0.00 1.75
521 583 6.310764 ACTTGAATCTGATGAGGTGAGAAT 57.689 37.500 0.00 0.00 0.00 2.40
522 584 5.337894 GGACTTGAATCTGATGAGGTGAGAA 60.338 44.000 0.00 0.00 0.00 2.87
523 585 4.161189 GGACTTGAATCTGATGAGGTGAGA 59.839 45.833 0.00 0.00 0.00 3.27
524 586 4.161942 AGGACTTGAATCTGATGAGGTGAG 59.838 45.833 0.00 0.00 0.00 3.51
525 587 4.081254 CAGGACTTGAATCTGATGAGGTGA 60.081 45.833 0.00 0.00 0.00 4.02
526 588 4.081254 TCAGGACTTGAATCTGATGAGGTG 60.081 45.833 0.00 0.00 33.21 4.00
527 589 4.099633 TCAGGACTTGAATCTGATGAGGT 58.900 43.478 0.00 0.00 33.21 3.85
528 590 4.750021 TCAGGACTTGAATCTGATGAGG 57.250 45.455 0.00 0.00 33.21 3.86
532 594 4.163649 TGAGCATCAGGACTTGAATCTGAT 59.836 41.667 0.00 0.00 42.56 2.90
533 595 3.516700 TGAGCATCAGGACTTGAATCTGA 59.483 43.478 0.00 0.00 42.56 3.27
534 596 3.870274 TGAGCATCAGGACTTGAATCTG 58.130 45.455 0.00 0.00 42.56 2.90
563 625 9.709495 CACCAAAAATTCTGAAATAAATCCAGA 57.291 29.630 0.00 0.00 35.38 3.86
564 626 9.709495 TCACCAAAAATTCTGAAATAAATCCAG 57.291 29.630 0.00 0.00 0.00 3.86
567 629 9.977762 GCATCACCAAAAATTCTGAAATAAATC 57.022 29.630 0.00 0.00 0.00 2.17
568 630 8.658609 CGCATCACCAAAAATTCTGAAATAAAT 58.341 29.630 0.00 0.00 0.00 1.40
569 631 7.359933 GCGCATCACCAAAAATTCTGAAATAAA 60.360 33.333 0.30 0.00 0.00 1.40
570 632 6.090628 GCGCATCACCAAAAATTCTGAAATAA 59.909 34.615 0.30 0.00 0.00 1.40
571 633 5.576384 GCGCATCACCAAAAATTCTGAAATA 59.424 36.000 0.30 0.00 0.00 1.40
572 634 4.389687 GCGCATCACCAAAAATTCTGAAAT 59.610 37.500 0.30 0.00 0.00 2.17
573 635 3.740321 GCGCATCACCAAAAATTCTGAAA 59.260 39.130 0.30 0.00 0.00 2.69
574 636 3.005684 AGCGCATCACCAAAAATTCTGAA 59.994 39.130 11.47 0.00 0.00 3.02
575 637 2.557924 AGCGCATCACCAAAAATTCTGA 59.442 40.909 11.47 0.00 0.00 3.27
576 638 2.950433 AGCGCATCACCAAAAATTCTG 58.050 42.857 11.47 0.00 0.00 3.02
577 639 3.665745 AAGCGCATCACCAAAAATTCT 57.334 38.095 11.47 0.00 0.00 2.40
578 640 3.740321 TGAAAGCGCATCACCAAAAATTC 59.260 39.130 11.47 0.00 0.00 2.17
579 641 3.726607 TGAAAGCGCATCACCAAAAATT 58.273 36.364 11.47 0.00 0.00 1.82
580 642 3.243839 ACTGAAAGCGCATCACCAAAAAT 60.244 39.130 11.47 0.00 37.60 1.82
581 643 2.100584 ACTGAAAGCGCATCACCAAAAA 59.899 40.909 11.47 0.00 37.60 1.94
582 644 1.680735 ACTGAAAGCGCATCACCAAAA 59.319 42.857 11.47 0.00 37.60 2.44
583 645 1.001487 CACTGAAAGCGCATCACCAAA 60.001 47.619 11.47 0.00 37.60 3.28
584 646 0.592637 CACTGAAAGCGCATCACCAA 59.407 50.000 11.47 0.00 37.60 3.67
585 647 1.236616 CCACTGAAAGCGCATCACCA 61.237 55.000 11.47 0.00 37.60 4.17
586 648 1.503542 CCACTGAAAGCGCATCACC 59.496 57.895 11.47 0.00 37.60 4.02
587 649 0.955428 TCCCACTGAAAGCGCATCAC 60.955 55.000 11.47 0.00 37.60 3.06
588 650 0.674581 CTCCCACTGAAAGCGCATCA 60.675 55.000 11.47 13.15 37.60 3.07
589 651 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
590 652 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
591 653 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
592 654 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
593 655 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
594 656 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
595 657 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
596 658 1.420430 AACGTCTCCTCCCACTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
597 659 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
598 660 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
599 661 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
600 662 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
620 682 2.976692 TATAGGCGCCTCGTCGTCGA 62.977 60.000 36.73 14.03 44.12 4.20
621 683 2.109538 TTATAGGCGCCTCGTCGTCG 62.110 60.000 36.73 0.00 39.34 5.12
622 684 0.240411 ATTATAGGCGCCTCGTCGTC 59.760 55.000 36.73 0.00 36.23 4.20
623 685 0.039437 CATTATAGGCGCCTCGTCGT 60.039 55.000 36.73 17.21 36.23 4.34
624 686 0.240145 TCATTATAGGCGCCTCGTCG 59.760 55.000 36.73 18.98 36.23 5.12
625 687 1.269998 AGTCATTATAGGCGCCTCGTC 59.730 52.381 36.73 16.85 0.00 4.20
626 688 1.329256 AGTCATTATAGGCGCCTCGT 58.671 50.000 36.73 25.29 0.00 4.18
627 689 2.029828 AGAAGTCATTATAGGCGCCTCG 60.030 50.000 36.73 17.43 0.00 4.63
628 690 3.669251 AGAAGTCATTATAGGCGCCTC 57.331 47.619 36.73 17.40 0.00 4.70
629 691 5.546621 TTAAGAAGTCATTATAGGCGCCT 57.453 39.130 34.85 34.85 0.00 5.52
630 692 6.651225 AGATTTAAGAAGTCATTATAGGCGCC 59.349 38.462 21.89 21.89 0.00 6.53
631 693 7.385205 TGAGATTTAAGAAGTCATTATAGGCGC 59.615 37.037 0.00 0.00 0.00 6.53
632 694 8.818141 TGAGATTTAAGAAGTCATTATAGGCG 57.182 34.615 0.00 0.00 0.00 5.52
643 705 9.282569 GGCATATCATCTTGAGATTTAAGAAGT 57.717 33.333 0.00 0.00 37.67 3.01
644 706 8.441608 CGGCATATCATCTTGAGATTTAAGAAG 58.558 37.037 0.00 0.00 37.67 2.85
645 707 7.388776 CCGGCATATCATCTTGAGATTTAAGAA 59.611 37.037 0.00 0.00 37.67 2.52
646 708 6.875726 CCGGCATATCATCTTGAGATTTAAGA 59.124 38.462 0.00 0.00 38.42 2.10
647 709 6.402983 GCCGGCATATCATCTTGAGATTTAAG 60.403 42.308 24.80 0.00 31.21 1.85
648 710 5.412594 GCCGGCATATCATCTTGAGATTTAA 59.587 40.000 24.80 0.00 31.21 1.52
649 711 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
650 712 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
651 713 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
652 714 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
653 715 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
654 716 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
655 717 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
656 718 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
657 719 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
658 720 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
659 721 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
660 722 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
661 723 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
662 724 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
663 725 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
664 726 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
665 727 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
666 728 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
667 729 2.214181 TTTCGAGAGACTGAGCCGGC 62.214 60.000 21.89 21.89 41.84 6.13
668 730 0.243907 TTTTCGAGAGACTGAGCCGG 59.756 55.000 0.00 0.00 41.84 6.13
669 731 1.923204 CATTTTCGAGAGACTGAGCCG 59.077 52.381 0.00 0.00 41.84 5.52
670 732 1.663135 GCATTTTCGAGAGACTGAGCC 59.337 52.381 0.00 0.00 41.84 4.70
671 733 2.615869 AGCATTTTCGAGAGACTGAGC 58.384 47.619 0.00 0.00 41.84 4.26
672 734 6.640499 CCTATAAGCATTTTCGAGAGACTGAG 59.360 42.308 0.00 0.00 41.84 3.35
673 735 6.461648 CCCTATAAGCATTTTCGAGAGACTGA 60.462 42.308 0.00 0.00 41.84 3.41
674 736 5.694006 CCCTATAAGCATTTTCGAGAGACTG 59.306 44.000 0.00 0.00 41.84 3.51
675 737 5.598830 TCCCTATAAGCATTTTCGAGAGACT 59.401 40.000 0.00 0.00 41.84 3.24
676 738 5.844004 TCCCTATAAGCATTTTCGAGAGAC 58.156 41.667 0.00 0.00 41.84 3.36
677 739 6.672266 ATCCCTATAAGCATTTTCGAGAGA 57.328 37.500 0.00 0.00 39.20 3.10
678 740 7.038659 CCTATCCCTATAAGCATTTTCGAGAG 58.961 42.308 0.00 0.00 0.00 3.20
679 741 6.070767 CCCTATCCCTATAAGCATTTTCGAGA 60.071 42.308 0.00 0.00 0.00 4.04
680 742 6.109359 CCCTATCCCTATAAGCATTTTCGAG 58.891 44.000 0.00 0.00 0.00 4.04
681 743 5.546499 ACCCTATCCCTATAAGCATTTTCGA 59.454 40.000 0.00 0.00 0.00 3.71
682 744 5.643777 CACCCTATCCCTATAAGCATTTTCG 59.356 44.000 0.00 0.00 0.00 3.46
683 745 6.431234 CACACCCTATCCCTATAAGCATTTTC 59.569 42.308 0.00 0.00 0.00 2.29
684 746 6.306987 CACACCCTATCCCTATAAGCATTTT 58.693 40.000 0.00 0.00 0.00 1.82
685 747 5.749032 GCACACCCTATCCCTATAAGCATTT 60.749 44.000 0.00 0.00 0.00 2.32
686 748 4.263506 GCACACCCTATCCCTATAAGCATT 60.264 45.833 0.00 0.00 0.00 3.56
687 749 3.264450 GCACACCCTATCCCTATAAGCAT 59.736 47.826 0.00 0.00 0.00 3.79
688 750 2.637872 GCACACCCTATCCCTATAAGCA 59.362 50.000 0.00 0.00 0.00 3.91
689 751 2.353803 CGCACACCCTATCCCTATAAGC 60.354 54.545 0.00 0.00 0.00 3.09
690 752 2.897969 ACGCACACCCTATCCCTATAAG 59.102 50.000 0.00 0.00 0.00 1.73
691 753 2.631062 CACGCACACCCTATCCCTATAA 59.369 50.000 0.00 0.00 0.00 0.98
692 754 2.244695 CACGCACACCCTATCCCTATA 58.755 52.381 0.00 0.00 0.00 1.31
693 755 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
694 756 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
695 757 0.324923 TACACGCACACCCTATCCCT 60.325 55.000 0.00 0.00 0.00 4.20
696 758 0.756903 ATACACGCACACCCTATCCC 59.243 55.000 0.00 0.00 0.00 3.85
697 759 2.363038 TGTATACACGCACACCCTATCC 59.637 50.000 0.08 0.00 0.00 2.59
698 760 3.720949 TGTATACACGCACACCCTATC 57.279 47.619 0.08 0.00 0.00 2.08
699 761 4.682778 AATGTATACACGCACACCCTAT 57.317 40.909 7.96 0.00 0.00 2.57
700 762 4.475051 AAATGTATACACGCACACCCTA 57.525 40.909 7.96 0.00 0.00 3.53
701 763 3.343941 AAATGTATACACGCACACCCT 57.656 42.857 7.96 0.00 0.00 4.34
702 764 5.407387 CCTATAAATGTATACACGCACACCC 59.593 44.000 7.96 0.00 0.00 4.61
703 765 5.407387 CCCTATAAATGTATACACGCACACC 59.593 44.000 7.96 0.00 0.00 4.16
704 766 5.407387 CCCCTATAAATGTATACACGCACAC 59.593 44.000 7.96 0.00 0.00 3.82
705 767 5.511716 CCCCCTATAAATGTATACACGCACA 60.512 44.000 7.96 0.00 0.00 4.57
706 768 4.933400 CCCCCTATAAATGTATACACGCAC 59.067 45.833 7.96 0.00 0.00 5.34
707 769 4.594062 ACCCCCTATAAATGTATACACGCA 59.406 41.667 7.96 0.00 0.00 5.24
708 770 4.933400 CACCCCCTATAAATGTATACACGC 59.067 45.833 7.96 0.00 0.00 5.34
709 771 6.349243 TCACCCCCTATAAATGTATACACG 57.651 41.667 7.96 0.00 0.00 4.49
710 772 8.161425 ACATTCACCCCCTATAAATGTATACAC 58.839 37.037 7.96 0.00 38.43 2.90
711 773 8.282801 ACATTCACCCCCTATAAATGTATACA 57.717 34.615 8.27 8.27 38.43 2.29
714 776 7.834181 GCATACATTCACCCCCTATAAATGTAT 59.166 37.037 11.35 11.35 46.56 2.29
715 777 7.172342 GCATACATTCACCCCCTATAAATGTA 58.828 38.462 8.25 8.25 43.22 2.29
716 778 6.010219 GCATACATTCACCCCCTATAAATGT 58.990 40.000 0.00 0.00 41.83 2.71
717 779 5.123820 CGCATACATTCACCCCCTATAAATG 59.876 44.000 0.00 0.00 34.34 2.32
718 780 5.253330 CGCATACATTCACCCCCTATAAAT 58.747 41.667 0.00 0.00 0.00 1.40
719 781 4.647611 CGCATACATTCACCCCCTATAAA 58.352 43.478 0.00 0.00 0.00 1.40
720 782 3.558321 GCGCATACATTCACCCCCTATAA 60.558 47.826 0.30 0.00 0.00 0.98
721 783 2.027561 GCGCATACATTCACCCCCTATA 60.028 50.000 0.30 0.00 0.00 1.31
722 784 1.271379 GCGCATACATTCACCCCCTAT 60.271 52.381 0.30 0.00 0.00 2.57
723 785 0.107831 GCGCATACATTCACCCCCTA 59.892 55.000 0.30 0.00 0.00 3.53
724 786 1.152963 GCGCATACATTCACCCCCT 60.153 57.895 0.30 0.00 0.00 4.79
725 787 2.542907 CGCGCATACATTCACCCCC 61.543 63.158 8.75 0.00 0.00 5.40
726 788 1.772063 GACGCGCATACATTCACCCC 61.772 60.000 5.73 0.00 0.00 4.95
727 789 0.810031 AGACGCGCATACATTCACCC 60.810 55.000 5.73 0.00 0.00 4.61
728 790 0.301687 CAGACGCGCATACATTCACC 59.698 55.000 5.73 0.00 0.00 4.02
729 791 0.999406 ACAGACGCGCATACATTCAC 59.001 50.000 5.73 0.00 0.00 3.18
730 792 2.570442 TACAGACGCGCATACATTCA 57.430 45.000 5.73 0.00 0.00 2.57
731 793 3.049912 TCATACAGACGCGCATACATTC 58.950 45.455 5.73 0.00 0.00 2.67
732 794 3.052745 CTCATACAGACGCGCATACATT 58.947 45.455 5.73 0.00 0.00 2.71
733 795 2.666026 CTCATACAGACGCGCATACAT 58.334 47.619 5.73 0.00 0.00 2.29
734 796 1.864029 GCTCATACAGACGCGCATACA 60.864 52.381 5.73 0.00 0.00 2.29
735 797 0.778815 GCTCATACAGACGCGCATAC 59.221 55.000 5.73 0.00 0.00 2.39
736 798 0.660300 CGCTCATACAGACGCGCATA 60.660 55.000 5.73 0.00 37.19 3.14
737 799 1.946156 CGCTCATACAGACGCGCAT 60.946 57.895 5.73 0.00 37.19 4.73
738 800 2.579518 CGCTCATACAGACGCGCA 60.580 61.111 5.73 0.00 37.19 6.09
740 802 1.874019 AAGCGCTCATACAGACGCG 60.874 57.895 12.06 3.53 45.17 6.01
741 803 1.633171 CAAGCGCTCATACAGACGC 59.367 57.895 12.06 0.00 42.80 5.19
742 804 1.633171 GCAAGCGCTCATACAGACG 59.367 57.895 12.06 0.00 34.30 4.18
743 805 1.078759 ACGCAAGCGCTCATACAGAC 61.079 55.000 12.06 0.00 44.19 3.51
744 806 0.802222 GACGCAAGCGCTCATACAGA 60.802 55.000 12.06 0.00 44.19 3.41
745 807 0.803768 AGACGCAAGCGCTCATACAG 60.804 55.000 12.06 1.77 44.19 2.74
746 808 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
747 809 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
748 810 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
749 811 0.179100 ATACAGACGCAAGCGCTCAT 60.179 50.000 12.06 0.00 44.19 2.90
750 812 0.802222 GATACAGACGCAAGCGCTCA 60.802 55.000 12.06 3.77 44.19 4.26
751 813 1.802300 CGATACAGACGCAAGCGCTC 61.802 60.000 12.06 11.06 44.19 5.03
752 814 1.874019 CGATACAGACGCAAGCGCT 60.874 57.895 15.09 2.64 44.19 5.92
753 815 2.158959 ACGATACAGACGCAAGCGC 61.159 57.895 15.09 0.00 44.19 5.92
754 816 1.071019 ACACGATACAGACGCAAGCG 61.071 55.000 13.50 13.50 46.03 4.68
755 817 1.068474 AACACGATACAGACGCAAGC 58.932 50.000 0.00 0.00 45.62 4.01
757 819 5.654317 TTTTTAACACGATACAGACGCAA 57.346 34.783 0.00 0.00 0.00 4.85
778 840 2.907458 AGGCTGCTATCTGGGTTTTT 57.093 45.000 0.00 0.00 0.00 1.94
784 846 6.543430 AGAAGATATTAGGCTGCTATCTGG 57.457 41.667 16.65 0.00 33.57 3.86
785 847 8.965819 TCTTAGAAGATATTAGGCTGCTATCTG 58.034 37.037 16.65 8.01 33.57 2.90
790 852 7.936301 CCTTTTCTTAGAAGATATTAGGCTGCT 59.064 37.037 0.00 0.00 34.49 4.24
792 854 7.174080 GGCCTTTTCTTAGAAGATATTAGGCTG 59.826 40.741 21.23 0.00 40.47 4.85
793 855 7.227873 GGCCTTTTCTTAGAAGATATTAGGCT 58.772 38.462 21.23 0.00 40.47 4.58
809 871 2.775490 AGAAAACCAGGGCCTTTTCT 57.225 45.000 20.87 20.87 40.39 2.52
810 872 3.838244 AAAGAAAACCAGGGCCTTTTC 57.162 42.857 17.65 17.65 36.86 2.29
812 874 3.521531 TCAAAAAGAAAACCAGGGCCTTT 59.478 39.130 1.32 0.00 0.00 3.11
814 876 2.700371 CTCAAAAAGAAAACCAGGGCCT 59.300 45.455 0.00 0.00 0.00 5.19
815 877 2.434336 ACTCAAAAAGAAAACCAGGGCC 59.566 45.455 0.00 0.00 0.00 5.80
816 878 3.819564 ACTCAAAAAGAAAACCAGGGC 57.180 42.857 0.00 0.00 0.00 5.19
817 879 5.337578 TCAACTCAAAAAGAAAACCAGGG 57.662 39.130 0.00 0.00 0.00 4.45
818 880 8.940768 TTTATCAACTCAAAAAGAAAACCAGG 57.059 30.769 0.00 0.00 0.00 4.45
984 1046 0.613260 CCATCGTGGTCCTTTCCTGA 59.387 55.000 0.00 0.00 31.35 3.86
1210 1275 1.185618 TTCACCGTGGACCTGAGAGG 61.186 60.000 0.00 0.00 42.49 3.69
1387 1452 3.819564 AGCACGACTAGGCATTCAATA 57.180 42.857 0.00 0.00 0.00 1.90
1468 1533 6.090483 TGACTAGTCTCTCAGGAAACAAAG 57.910 41.667 23.01 0.00 0.00 2.77
1521 1586 3.545078 GCTAGACAAATTGCGCAGAAATG 59.455 43.478 11.31 11.38 0.00 2.32
1587 1653 1.944024 CCCAACAGCTTTACGACACAA 59.056 47.619 0.00 0.00 0.00 3.33
1607 1673 6.816140 GGAGAGCCATAGATAAACTGATAAGC 59.184 42.308 0.00 0.00 0.00 3.09
1608 1674 8.133024 AGGAGAGCCATAGATAAACTGATAAG 57.867 38.462 0.00 0.00 36.29 1.73
1790 1861 0.685097 TAAAGGCAACAGACCGAGCT 59.315 50.000 0.00 0.00 41.41 4.09
2077 2148 8.705048 TTGTTCATTACACAGCATATACGTTA 57.295 30.769 0.00 0.00 36.21 3.18
2080 2151 8.888332 TTTTTGTTCATTACACAGCATATACG 57.112 30.769 0.00 0.00 36.21 3.06
2099 2170 5.003804 ACAGTTCTGAGACACACTTTTTGT 58.996 37.500 6.83 0.00 39.97 2.83
2100 2171 5.122239 TCACAGTTCTGAGACACACTTTTTG 59.878 40.000 6.83 0.00 0.00 2.44
2566 2642 4.204012 CAAACGACCCACCCAATATACAT 58.796 43.478 0.00 0.00 0.00 2.29
2576 2652 0.812549 AAACACACAAACGACCCACC 59.187 50.000 0.00 0.00 0.00 4.61
2641 2717 7.425224 TTTTGACCTGGACCTTTTCAATTTA 57.575 32.000 0.00 0.00 0.00 1.40
2715 2792 7.395190 TGAATATCAGAAACCAACCAATGAG 57.605 36.000 0.00 0.00 0.00 2.90
2968 3045 5.720520 ACCAGGAACCCTACTAGTTAAAGAG 59.279 44.000 0.00 0.00 29.64 2.85
3020 3098 2.010145 TTAGGCACGAGATCAACAGC 57.990 50.000 0.00 0.00 0.00 4.40
3243 3322 1.089112 AACGTAAGCCGGCCAAATAC 58.911 50.000 26.15 19.42 42.24 1.89
3259 3338 5.111293 ACGGGTAATTATGTAGGACAAACG 58.889 41.667 0.00 0.00 0.00 3.60
3280 3359 2.046700 TAGGCCGGCAAAGGAACG 60.047 61.111 30.85 0.00 0.00 3.95
3348 3428 1.948391 AGTAGTACCGCCCTTCCTTT 58.052 50.000 0.00 0.00 0.00 3.11
3357 3437 3.377798 AGCTCACTTCTTAGTAGTACCGC 59.622 47.826 0.00 0.00 31.96 5.68
3360 3440 8.211116 TGTATCAGCTCACTTCTTAGTAGTAC 57.789 38.462 0.00 0.00 31.96 2.73
3361 3441 8.982091 ATGTATCAGCTCACTTCTTAGTAGTA 57.018 34.615 0.00 0.00 31.96 1.82
3362 3442 7.889873 ATGTATCAGCTCACTTCTTAGTAGT 57.110 36.000 0.00 0.00 31.96 2.73
3363 3443 8.629158 AGAATGTATCAGCTCACTTCTTAGTAG 58.371 37.037 0.00 0.00 31.96 2.57
3364 3444 8.526667 AGAATGTATCAGCTCACTTCTTAGTA 57.473 34.615 0.00 0.00 31.96 1.82
3365 3445 7.341769 AGAGAATGTATCAGCTCACTTCTTAGT 59.658 37.037 0.00 0.00 34.00 2.24
3366 3446 7.715657 AGAGAATGTATCAGCTCACTTCTTAG 58.284 38.462 0.00 0.00 0.00 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.