Multiple sequence alignment - TraesCS7D01G309400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G309400 chr7D 100.000 6028 0 0 1 6028 392750017 392743990 0.000000e+00 11132
1 TraesCS7D01G309400 chr7D 81.118 805 126 20 3512 4297 104749104 104748307 6.640000e-174 621
2 TraesCS7D01G309400 chr7D 83.522 619 86 11 5422 6028 199126545 199125931 1.130000e-156 564
3 TraesCS7D01G309400 chr7D 86.822 387 51 0 3512 3898 392264615 392264229 3.340000e-117 433
4 TraesCS7D01G309400 chr7D 83.208 399 65 2 3902 4299 392264103 392263706 1.230000e-96 364
5 TraesCS7D01G309400 chr7D 87.037 162 19 2 3266 3426 392264965 392264805 1.330000e-41 182
6 TraesCS7D01G309400 chr7D 73.978 465 92 18 4395 4840 392263618 392263164 1.740000e-35 161
7 TraesCS7D01G309400 chr7A 94.343 1803 66 16 2730 4513 444794103 444792318 0.000000e+00 2732
8 TraesCS7D01G309400 chr7A 91.399 872 53 10 4543 5400 444792258 444791395 0.000000e+00 1175
9 TraesCS7D01G309400 chr7A 85.374 1135 69 39 1575 2657 444795417 444794328 0.000000e+00 1086
10 TraesCS7D01G309400 chr7A 85.515 718 50 22 859 1557 444796168 444795486 0.000000e+00 701
11 TraesCS7D01G309400 chr7A 86.305 387 53 0 3512 3898 443964852 443964466 7.220000e-114 422
12 TraesCS7D01G309400 chr7A 82.915 398 66 2 3902 4298 443964337 443963941 2.070000e-94 357
13 TraesCS7D01G309400 chr7A 88.272 162 17 2 3266 3426 443965204 443965044 6.170000e-45 193
14 TraesCS7D01G309400 chr7A 74.145 468 84 27 4395 4840 443963669 443963217 6.250000e-35 159
15 TraesCS7D01G309400 chr7B 95.849 1590 32 21 2758 4314 388955396 388953808 0.000000e+00 2540
16 TraesCS7D01G309400 chr7B 83.113 2043 128 96 99 2014 388957998 388956046 0.000000e+00 1661
17 TraesCS7D01G309400 chr7B 91.696 1132 53 16 4298 5400 388953788 388952669 0.000000e+00 1531
18 TraesCS7D01G309400 chr7B 87.597 387 48 0 3512 3898 388597632 388597246 3.310000e-122 449
19 TraesCS7D01G309400 chr7B 84.211 399 61 2 3902 4299 388597145 388596748 2.640000e-103 387
20 TraesCS7D01G309400 chr7B 83.246 382 34 14 2311 2688 388955768 388955413 2.100000e-84 324
21 TraesCS7D01G309400 chr7B 87.578 161 20 0 3266 3426 388597986 388597826 2.870000e-43 187
22 TraesCS7D01G309400 chr7B 90.580 138 13 0 3291 3428 63170249 63170386 3.710000e-42 183
23 TraesCS7D01G309400 chr7B 74.034 466 86 22 4395 4840 388596634 388596184 2.250000e-34 158
24 TraesCS7D01G309400 chr6D 93.750 608 38 0 5421 6028 265883693 265884300 0.000000e+00 913
25 TraesCS7D01G309400 chr4B 85.173 607 86 3 5424 6028 393408164 393408768 2.390000e-173 619
26 TraesCS7D01G309400 chr4B 83.633 611 93 5 5423 6028 399769350 399768742 8.770000e-158 568
27 TraesCS7D01G309400 chr5B 84.918 610 84 7 5423 6028 115376723 115377328 1.440000e-170 610
28 TraesCS7D01G309400 chr2A 84.488 606 93 1 5424 6028 745064725 745065330 1.120000e-166 597
29 TraesCS7D01G309400 chr2A 85.176 398 57 2 3902 4298 775748274 775748670 2.020000e-109 407
30 TraesCS7D01G309400 chr2A 85.117 383 57 0 3513 3895 775747585 775747967 5.660000e-105 392
31 TraesCS7D01G309400 chr2A 86.503 163 22 0 3265 3427 775747319 775747481 4.800000e-41 180
32 TraesCS7D01G309400 chr4A 84.323 606 95 0 5423 6028 635935857 635936462 1.450000e-165 593
33 TraesCS7D01G309400 chr4A 83.775 604 98 0 5425 6028 18055288 18054685 1.880000e-159 573
34 TraesCS7D01G309400 chr2B 83.882 608 96 2 5421 6028 381299783 381300388 4.050000e-161 579
35 TraesCS7D01G309400 chr2B 84.788 401 59 2 3902 4301 784717922 784717523 9.410000e-108 401
36 TraesCS7D01G309400 chr2B 83.377 385 62 2 3513 3896 784718509 784718126 7.430000e-94 355
37 TraesCS7D01G309400 chr2B 86.503 163 22 0 3265 3427 784718775 784718613 4.800000e-41 180
38 TraesCS7D01G309400 chr1A 80.526 760 131 13 3551 4297 39636876 39636121 8.770000e-158 568
39 TraesCS7D01G309400 chr2D 85.287 401 57 2 3902 4301 648636158 648635759 4.350000e-111 412
40 TraesCS7D01G309400 chr2D 83.594 384 63 0 3513 3896 648636735 648636352 1.600000e-95 361
41 TraesCS7D01G309400 chr2D 86.503 163 22 0 3265 3427 648637001 648636839 4.800000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G309400 chr7D 392743990 392750017 6027 True 11132.000000 11132 100.000000 1 6028 1 chr7D.!!$R3 6027
1 TraesCS7D01G309400 chr7D 104748307 104749104 797 True 621.000000 621 81.118000 3512 4297 1 chr7D.!!$R1 785
2 TraesCS7D01G309400 chr7D 199125931 199126545 614 True 564.000000 564 83.522000 5422 6028 1 chr7D.!!$R2 606
3 TraesCS7D01G309400 chr7D 392263164 392264965 1801 True 285.000000 433 82.761250 3266 4840 4 chr7D.!!$R4 1574
4 TraesCS7D01G309400 chr7A 444791395 444796168 4773 True 1423.500000 2732 89.157750 859 5400 4 chr7A.!!$R2 4541
5 TraesCS7D01G309400 chr7A 443963217 443965204 1987 True 282.750000 422 82.909250 3266 4840 4 chr7A.!!$R1 1574
6 TraesCS7D01G309400 chr7B 388952669 388957998 5329 True 1514.000000 2540 88.476000 99 5400 4 chr7B.!!$R2 5301
7 TraesCS7D01G309400 chr7B 388596184 388597986 1802 True 295.250000 449 83.355000 3266 4840 4 chr7B.!!$R1 1574
8 TraesCS7D01G309400 chr6D 265883693 265884300 607 False 913.000000 913 93.750000 5421 6028 1 chr6D.!!$F1 607
9 TraesCS7D01G309400 chr4B 393408164 393408768 604 False 619.000000 619 85.173000 5424 6028 1 chr4B.!!$F1 604
10 TraesCS7D01G309400 chr4B 399768742 399769350 608 True 568.000000 568 83.633000 5423 6028 1 chr4B.!!$R1 605
11 TraesCS7D01G309400 chr5B 115376723 115377328 605 False 610.000000 610 84.918000 5423 6028 1 chr5B.!!$F1 605
12 TraesCS7D01G309400 chr2A 745064725 745065330 605 False 597.000000 597 84.488000 5424 6028 1 chr2A.!!$F1 604
13 TraesCS7D01G309400 chr2A 775747319 775748670 1351 False 326.333333 407 85.598667 3265 4298 3 chr2A.!!$F2 1033
14 TraesCS7D01G309400 chr4A 635935857 635936462 605 False 593.000000 593 84.323000 5423 6028 1 chr4A.!!$F1 605
15 TraesCS7D01G309400 chr4A 18054685 18055288 603 True 573.000000 573 83.775000 5425 6028 1 chr4A.!!$R1 603
16 TraesCS7D01G309400 chr2B 381299783 381300388 605 False 579.000000 579 83.882000 5421 6028 1 chr2B.!!$F1 607
17 TraesCS7D01G309400 chr2B 784717523 784718775 1252 True 312.000000 401 84.889333 3265 4301 3 chr2B.!!$R1 1036
18 TraesCS7D01G309400 chr1A 39636121 39636876 755 True 568.000000 568 80.526000 3551 4297 1 chr1A.!!$R1 746
19 TraesCS7D01G309400 chr2D 648635759 648637001 1242 True 317.666667 412 85.128000 3265 4301 3 chr2D.!!$R1 1036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 648 0.041684 CCATCTTTCCCAAAGCCCCT 59.958 55.0 0.00 0.0 38.39 4.79 F
1382 1504 0.248866 CACACCGACCAGCCAAAAAC 60.249 55.0 0.00 0.0 0.00 2.43 F
2558 2971 0.038744 ACAAGGGGTCAAGCCAGATG 59.961 55.0 0.01 0.0 39.65 2.90 F
2682 3099 0.239347 CAACTGGCACTGCTACTTGC 59.761 55.0 0.00 0.0 43.25 4.01 F
3052 3633 0.318699 GGGTTGAAACTTCTTGCGGC 60.319 55.0 0.00 0.0 0.00 6.53 F
4774 6055 0.621571 TATTCCTGCAGCTCCCCTGT 60.622 55.0 8.66 0.0 43.71 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 1789 1.003545 CATCGCAAATCACACCGATCC 60.004 52.381 0.00 0.0 38.25 3.36 R
3074 3655 0.440371 GGCTTTCTTCTCACGAAGCG 59.560 55.000 0.00 0.0 45.01 4.68 R
3706 4457 3.071479 GGTCACCATGTACACGATGTTT 58.929 45.455 0.00 0.0 0.00 2.83 R
4355 5460 4.142381 CGTCGATCAGGATTCAGGCATATA 60.142 45.833 0.00 0.0 0.00 0.86 R
4900 6181 0.455972 GTGGCACAACACACACACAC 60.456 55.000 13.86 0.0 44.16 3.82 R
5764 7078 0.829990 TCATGGCCAATCTACAGCGA 59.170 50.000 10.96 0.0 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.514274 CCCCAATGTATACATGTTTGGTC 57.486 43.478 24.93 4.12 36.56 4.02
23 24 4.340950 CCCCAATGTATACATGTTTGGTCC 59.659 45.833 24.93 0.00 36.56 4.46
24 25 4.340950 CCCAATGTATACATGTTTGGTCCC 59.659 45.833 24.93 0.00 36.56 4.46
25 26 4.340950 CCAATGTATACATGTTTGGTCCCC 59.659 45.833 21.28 0.00 36.56 4.81
26 27 3.655615 TGTATACATGTTTGGTCCCCC 57.344 47.619 2.30 0.00 0.00 5.40
27 28 3.194620 TGTATACATGTTTGGTCCCCCT 58.805 45.455 2.30 0.00 0.00 4.79
28 29 3.594232 TGTATACATGTTTGGTCCCCCTT 59.406 43.478 2.30 0.00 0.00 3.95
29 30 2.595750 TACATGTTTGGTCCCCCTTG 57.404 50.000 2.30 0.00 0.00 3.61
30 31 0.560688 ACATGTTTGGTCCCCCTTGT 59.439 50.000 0.00 0.00 0.00 3.16
31 32 1.256812 CATGTTTGGTCCCCCTTGTC 58.743 55.000 0.00 0.00 0.00 3.18
32 33 1.158007 ATGTTTGGTCCCCCTTGTCT 58.842 50.000 0.00 0.00 0.00 3.41
33 34 0.476771 TGTTTGGTCCCCCTTGTCTC 59.523 55.000 0.00 0.00 0.00 3.36
34 35 0.476771 GTTTGGTCCCCCTTGTCTCA 59.523 55.000 0.00 0.00 0.00 3.27
35 36 1.075536 GTTTGGTCCCCCTTGTCTCAT 59.924 52.381 0.00 0.00 0.00 2.90
36 37 0.991920 TTGGTCCCCCTTGTCTCATC 59.008 55.000 0.00 0.00 0.00 2.92
37 38 1.264749 TGGTCCCCCTTGTCTCATCG 61.265 60.000 0.00 0.00 0.00 3.84
38 39 1.265454 GGTCCCCCTTGTCTCATCGT 61.265 60.000 0.00 0.00 0.00 3.73
39 40 0.613777 GTCCCCCTTGTCTCATCGTT 59.386 55.000 0.00 0.00 0.00 3.85
40 41 1.829222 GTCCCCCTTGTCTCATCGTTA 59.171 52.381 0.00 0.00 0.00 3.18
41 42 2.108168 TCCCCCTTGTCTCATCGTTAG 58.892 52.381 0.00 0.00 0.00 2.34
42 43 1.139058 CCCCCTTGTCTCATCGTTAGG 59.861 57.143 0.00 0.00 0.00 2.69
43 44 1.139058 CCCCTTGTCTCATCGTTAGGG 59.861 57.143 0.00 0.00 41.63 3.53
44 45 2.108168 CCCTTGTCTCATCGTTAGGGA 58.892 52.381 0.00 0.00 44.13 4.20
45 46 2.159085 CCCTTGTCTCATCGTTAGGGAC 60.159 54.545 0.00 0.00 44.13 4.46
46 47 2.496070 CCTTGTCTCATCGTTAGGGACA 59.504 50.000 3.71 3.71 35.51 4.02
47 48 3.512680 CTTGTCTCATCGTTAGGGACAC 58.487 50.000 6.70 0.00 36.78 3.67
48 49 1.822990 TGTCTCATCGTTAGGGACACC 59.177 52.381 3.71 0.00 32.91 4.16
49 50 1.822990 GTCTCATCGTTAGGGACACCA 59.177 52.381 0.00 0.00 40.13 4.17
50 51 2.232941 GTCTCATCGTTAGGGACACCAA 59.767 50.000 0.00 0.00 40.13 3.67
51 52 2.496070 TCTCATCGTTAGGGACACCAAG 59.504 50.000 0.00 0.00 40.13 3.61
52 53 2.233922 CTCATCGTTAGGGACACCAAGT 59.766 50.000 0.00 0.00 40.13 3.16
53 54 3.433343 TCATCGTTAGGGACACCAAGTA 58.567 45.455 0.00 0.00 40.13 2.24
54 55 3.194116 TCATCGTTAGGGACACCAAGTAC 59.806 47.826 0.00 0.00 40.13 2.73
55 56 1.541147 TCGTTAGGGACACCAAGTACG 59.459 52.381 0.00 0.00 40.13 3.67
56 57 1.718396 GTTAGGGACACCAAGTACGC 58.282 55.000 0.00 0.00 40.13 4.42
57 58 0.244450 TTAGGGACACCAAGTACGCG 59.756 55.000 3.53 3.53 40.13 6.01
58 59 0.895100 TAGGGACACCAAGTACGCGT 60.895 55.000 19.17 19.17 40.13 6.01
59 60 2.025418 GGGACACCAAGTACGCGTG 61.025 63.158 24.59 7.05 36.50 5.34
60 61 1.007038 GGACACCAAGTACGCGTGA 60.007 57.895 24.59 2.80 0.00 4.35
61 62 0.389426 GGACACCAAGTACGCGTGAT 60.389 55.000 24.59 7.18 0.00 3.06
62 63 0.713883 GACACCAAGTACGCGTGATG 59.286 55.000 24.59 17.08 0.00 3.07
63 64 0.669318 ACACCAAGTACGCGTGATGG 60.669 55.000 27.55 27.55 37.19 3.51
64 65 0.389296 CACCAAGTACGCGTGATGGA 60.389 55.000 32.64 10.34 35.16 3.41
65 66 0.535335 ACCAAGTACGCGTGATGGAT 59.465 50.000 32.64 20.12 35.16 3.41
66 67 1.066430 ACCAAGTACGCGTGATGGATT 60.066 47.619 32.64 17.26 35.16 3.01
67 68 2.006888 CCAAGTACGCGTGATGGATTT 58.993 47.619 26.15 7.31 32.82 2.17
68 69 3.191669 CCAAGTACGCGTGATGGATTTA 58.808 45.455 26.15 1.35 32.82 1.40
69 70 3.619483 CCAAGTACGCGTGATGGATTTAA 59.381 43.478 26.15 0.62 32.82 1.52
70 71 4.493545 CCAAGTACGCGTGATGGATTTAAC 60.494 45.833 26.15 12.48 32.82 2.01
71 72 3.192466 AGTACGCGTGATGGATTTAACC 58.808 45.455 24.59 0.00 0.00 2.85
72 73 2.102070 ACGCGTGATGGATTTAACCA 57.898 45.000 12.93 0.00 44.41 3.67
73 74 2.428491 ACGCGTGATGGATTTAACCAA 58.572 42.857 12.93 0.00 43.47 3.67
74 75 2.418628 ACGCGTGATGGATTTAACCAAG 59.581 45.455 12.93 0.00 43.47 3.61
75 76 2.791158 CGCGTGATGGATTTAACCAAGC 60.791 50.000 0.00 0.00 43.47 4.01
76 77 2.791158 GCGTGATGGATTTAACCAAGCG 60.791 50.000 0.00 0.00 43.47 4.68
77 78 2.418628 CGTGATGGATTTAACCAAGCGT 59.581 45.455 0.00 0.00 43.47 5.07
78 79 3.485216 CGTGATGGATTTAACCAAGCGTC 60.485 47.826 0.00 0.00 43.47 5.19
79 80 3.013921 TGATGGATTTAACCAAGCGTCC 58.986 45.455 0.00 0.00 43.47 4.79
80 81 2.570415 TGGATTTAACCAAGCGTCCA 57.430 45.000 0.00 0.00 36.96 4.02
81 82 2.156098 TGGATTTAACCAAGCGTCCAC 58.844 47.619 0.00 0.00 36.96 4.02
82 83 2.156098 GGATTTAACCAAGCGTCCACA 58.844 47.619 0.00 0.00 0.00 4.17
83 84 2.161609 GGATTTAACCAAGCGTCCACAG 59.838 50.000 0.00 0.00 0.00 3.66
84 85 2.335316 TTTAACCAAGCGTCCACAGT 57.665 45.000 0.00 0.00 0.00 3.55
85 86 2.335316 TTAACCAAGCGTCCACAGTT 57.665 45.000 0.00 0.00 0.00 3.16
86 87 2.335316 TAACCAAGCGTCCACAGTTT 57.665 45.000 0.00 0.00 0.00 2.66
87 88 1.021968 AACCAAGCGTCCACAGTTTC 58.978 50.000 0.00 0.00 0.00 2.78
88 89 0.107410 ACCAAGCGTCCACAGTTTCA 60.107 50.000 0.00 0.00 0.00 2.69
89 90 1.021202 CCAAGCGTCCACAGTTTCAA 58.979 50.000 0.00 0.00 0.00 2.69
90 91 1.403679 CCAAGCGTCCACAGTTTCAAA 59.596 47.619 0.00 0.00 0.00 2.69
91 92 2.159310 CCAAGCGTCCACAGTTTCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
92 93 3.506810 CAAGCGTCCACAGTTTCAAAAA 58.493 40.909 0.00 0.00 0.00 1.94
93 94 3.420839 AGCGTCCACAGTTTCAAAAAG 57.579 42.857 0.00 0.00 0.00 2.27
94 95 3.013921 AGCGTCCACAGTTTCAAAAAGA 58.986 40.909 0.00 0.00 0.00 2.52
95 96 3.442273 AGCGTCCACAGTTTCAAAAAGAA 59.558 39.130 0.00 0.00 0.00 2.52
96 97 4.082463 AGCGTCCACAGTTTCAAAAAGAAA 60.082 37.500 0.00 0.00 43.71 2.52
142 146 6.192360 CCGCTCAAATAAATCGTTTTCTAGG 58.808 40.000 0.00 0.00 0.00 3.02
213 229 2.047179 GGGCACGTCTCCCTCAAC 60.047 66.667 13.77 0.00 40.66 3.18
214 230 2.741092 GGCACGTCTCCCTCAACA 59.259 61.111 0.00 0.00 0.00 3.33
215 231 1.374758 GGCACGTCTCCCTCAACAG 60.375 63.158 0.00 0.00 0.00 3.16
216 232 2.029844 GCACGTCTCCCTCAACAGC 61.030 63.158 0.00 0.00 0.00 4.40
227 243 1.134995 CCTCAACAGCACAGCTCGATA 60.135 52.381 0.00 0.00 36.40 2.92
273 293 0.248743 TACATACGCGTACAGCTGGC 60.249 55.000 23.19 11.08 45.59 4.85
314 334 2.533318 GCCACAGCTGTGTCTACAC 58.467 57.895 37.55 19.66 44.21 2.90
395 415 7.444183 TGAAAAGAAAATGTAGACGAATCAGGT 59.556 33.333 0.00 0.00 0.00 4.00
400 420 6.969828 AAATGTAGACGAATCAGGTCTTTC 57.030 37.500 0.00 0.00 41.83 2.62
413 433 6.049955 TCAGGTCTTTCCGATATGTTTCTT 57.950 37.500 0.00 0.00 41.99 2.52
415 435 6.940298 TCAGGTCTTTCCGATATGTTTCTTTT 59.060 34.615 0.00 0.00 41.99 2.27
456 477 1.376812 AAATGGGGAGCCGTCGAAC 60.377 57.895 0.00 0.00 0.00 3.95
461 482 2.504244 GGAGCCGTCGAACGTGAG 60.504 66.667 0.00 0.00 40.58 3.51
480 504 1.666553 TTACACGAACTGCGCTGGG 60.667 57.895 18.98 9.61 46.04 4.45
568 595 2.827921 GTTTTGATGGACCTTGGAGCAT 59.172 45.455 0.00 0.00 0.00 3.79
593 620 3.987404 GGTCTGCCGCTTCATGTT 58.013 55.556 0.00 0.00 0.00 2.71
604 631 0.251916 CTTCATGTTACGAGCCCCCA 59.748 55.000 0.00 0.00 0.00 4.96
621 648 0.041684 CCATCTTTCCCAAAGCCCCT 59.958 55.000 0.00 0.00 38.39 4.79
771 821 4.115199 GCACAGAGGGCCCCGATT 62.115 66.667 21.43 0.00 0.00 3.34
772 822 2.124570 CACAGAGGGCCCCGATTG 60.125 66.667 21.43 14.44 0.00 2.67
773 823 4.115199 ACAGAGGGCCCCGATTGC 62.115 66.667 21.43 0.65 0.00 3.56
774 824 3.801997 CAGAGGGCCCCGATTGCT 61.802 66.667 21.43 3.37 0.00 3.91
775 825 3.801997 AGAGGGCCCCGATTGCTG 61.802 66.667 21.43 0.00 0.00 4.41
776 826 4.883354 GAGGGCCCCGATTGCTGG 62.883 72.222 21.43 0.00 0.00 4.85
785 835 4.847367 GATTGCTGGGCCAGGGGG 62.847 72.222 33.43 11.08 37.18 5.40
790 840 2.697644 CTGGGCCAGGGGGATCTT 60.698 66.667 26.34 0.00 35.59 2.40
791 841 3.023116 TGGGCCAGGGGGATCTTG 61.023 66.667 0.00 0.00 35.59 3.02
792 842 3.825623 GGGCCAGGGGGATCTTGG 61.826 72.222 4.39 0.00 35.59 3.61
793 843 4.529731 GGCCAGGGGGATCTTGGC 62.530 72.222 17.16 17.16 44.31 4.52
794 844 3.743017 GCCAGGGGGATCTTGGCA 61.743 66.667 19.20 0.00 44.42 4.92
795 845 2.599597 CCAGGGGGATCTTGGCAG 59.400 66.667 0.00 0.00 35.59 4.85
796 846 2.002977 CCAGGGGGATCTTGGCAGA 61.003 63.158 0.00 0.00 35.59 4.26
797 847 1.530771 CAGGGGGATCTTGGCAGAG 59.469 63.158 0.00 0.00 30.36 3.35
822 872 4.393155 TGCCGCGCTGGAGTCAAT 62.393 61.111 20.06 0.00 42.00 2.57
880 960 6.389830 TCTCTGCTCTGCTCTATAAAGAAG 57.610 41.667 0.00 0.00 0.00 2.85
891 972 5.361285 GCTCTATAAAGAAGAGACCAGTCCA 59.639 44.000 4.34 0.00 42.63 4.02
896 977 0.670854 GAAGAGACCAGTCCAACGCC 60.671 60.000 0.00 0.00 0.00 5.68
897 978 1.122019 AAGAGACCAGTCCAACGCCT 61.122 55.000 0.00 0.00 0.00 5.52
898 979 1.079750 GAGACCAGTCCAACGCCTC 60.080 63.158 0.00 0.00 0.00 4.70
901 982 0.250338 GACCAGTCCAACGCCTCTTT 60.250 55.000 0.00 0.00 0.00 2.52
902 983 1.001633 GACCAGTCCAACGCCTCTTTA 59.998 52.381 0.00 0.00 0.00 1.85
903 984 1.628846 ACCAGTCCAACGCCTCTTTAT 59.371 47.619 0.00 0.00 0.00 1.40
904 985 2.835764 ACCAGTCCAACGCCTCTTTATA 59.164 45.455 0.00 0.00 0.00 0.98
914 1008 6.239176 CCAACGCCTCTTTATATCTCTCTCTT 60.239 42.308 0.00 0.00 0.00 2.85
917 1011 6.083630 CGCCTCTTTATATCTCTCTCTTTCG 58.916 44.000 0.00 0.00 0.00 3.46
945 1039 0.385029 CTCTGCACATCCTCCTCTCG 59.615 60.000 0.00 0.00 0.00 4.04
959 1058 0.667993 CTCTCGCACATCTCCCTCTC 59.332 60.000 0.00 0.00 0.00 3.20
980 1079 4.836825 TCTTTACTCTCCATTGCTCAAGG 58.163 43.478 0.00 0.00 0.00 3.61
1057 1161 0.530744 CAAGGTACGTGCTCCTGCTA 59.469 55.000 3.01 0.00 40.48 3.49
1075 1179 5.453621 CCTGCTAAGCAATCAATCTCTCTCT 60.454 44.000 0.00 0.00 38.41 3.10
1076 1180 5.599732 TGCTAAGCAATCAATCTCTCTCTC 58.400 41.667 0.00 0.00 34.76 3.20
1077 1181 4.990426 GCTAAGCAATCAATCTCTCTCTCC 59.010 45.833 0.00 0.00 0.00 3.71
1078 1182 4.420522 AAGCAATCAATCTCTCTCTCCC 57.579 45.455 0.00 0.00 0.00 4.30
1079 1183 3.656496 AGCAATCAATCTCTCTCTCCCT 58.344 45.455 0.00 0.00 0.00 4.20
1080 1184 3.642848 AGCAATCAATCTCTCTCTCCCTC 59.357 47.826 0.00 0.00 0.00 4.30
1081 1185 3.642848 GCAATCAATCTCTCTCTCCCTCT 59.357 47.826 0.00 0.00 0.00 3.69
1091 1195 1.230650 TCTCCCTCTCCTCTCCCCA 60.231 63.158 0.00 0.00 0.00 4.96
1127 1231 6.555315 AGAAAATTACAGTCGCAAATCATCC 58.445 36.000 0.00 0.00 0.00 3.51
1140 1244 5.392919 CGCAAATCATCCTGTTAATCAACCA 60.393 40.000 0.00 0.00 33.41 3.67
1144 1248 8.928733 CAAATCATCCTGTTAATCAACCAAAAG 58.071 33.333 0.00 0.00 33.41 2.27
1145 1249 8.421249 AATCATCCTGTTAATCAACCAAAAGA 57.579 30.769 0.00 0.00 33.41 2.52
1150 1254 8.477419 TCCTGTTAATCAACCAAAAGAAAGAT 57.523 30.769 0.00 0.00 33.41 2.40
1151 1255 9.581289 TCCTGTTAATCAACCAAAAGAAAGATA 57.419 29.630 0.00 0.00 33.41 1.98
1152 1256 9.626045 CCTGTTAATCAACCAAAAGAAAGATAC 57.374 33.333 0.00 0.00 33.41 2.24
1181 1285 9.557061 CCCAGTAAAAGTTTTAGATAGATACCC 57.443 37.037 8.33 0.00 0.00 3.69
1346 1468 2.043227 GATGATTCCCTTCCGTCTCCT 58.957 52.381 0.00 0.00 0.00 3.69
1382 1504 0.248866 CACACCGACCAGCCAAAAAC 60.249 55.000 0.00 0.00 0.00 2.43
1395 1517 1.333177 CAAAAACCCAACCGGATGGA 58.667 50.000 30.96 0.00 43.54 3.41
1396 1518 1.899142 CAAAAACCCAACCGGATGGAT 59.101 47.619 30.96 13.12 43.54 3.41
1491 1627 1.374758 CTCCTCGCACCTTCACACC 60.375 63.158 0.00 0.00 0.00 4.16
1518 1662 6.779860 TGATTTCTCCCTACTACTTTTTGCT 58.220 36.000 0.00 0.00 0.00 3.91
1537 1681 2.798148 TTCGGCTCCCCTTTTCTCGC 62.798 60.000 0.00 0.00 0.00 5.03
1538 1682 2.671682 GGCTCCCCTTTTCTCGCT 59.328 61.111 0.00 0.00 0.00 4.93
1573 1773 9.565090 AAGATGCAGCAATTAAAGTATCTATGA 57.435 29.630 4.07 0.00 33.29 2.15
1589 1789 5.077134 TCTATGAATCATGCCCGTCATAG 57.923 43.478 18.80 18.80 45.96 2.23
1607 1807 0.249120 AGGATCGGTGTGATTTGCGA 59.751 50.000 0.00 0.00 37.47 5.10
1645 1845 2.504996 CCCAATTCTGCCTTCTCTCTCT 59.495 50.000 0.00 0.00 0.00 3.10
1647 1847 3.451902 CCAATTCTGCCTTCTCTCTCTCT 59.548 47.826 0.00 0.00 0.00 3.10
1648 1848 4.441913 CCAATTCTGCCTTCTCTCTCTCTC 60.442 50.000 0.00 0.00 0.00 3.20
1649 1849 3.737559 TTCTGCCTTCTCTCTCTCTCT 57.262 47.619 0.00 0.00 0.00 3.10
1650 1850 3.281727 TCTGCCTTCTCTCTCTCTCTC 57.718 52.381 0.00 0.00 0.00 3.20
1651 1851 2.846206 TCTGCCTTCTCTCTCTCTCTCT 59.154 50.000 0.00 0.00 0.00 3.10
1652 1852 3.266772 TCTGCCTTCTCTCTCTCTCTCTT 59.733 47.826 0.00 0.00 0.00 2.85
1669 1869 7.176865 TCTCTCTCTTCCGTTCTCTGAAAATTA 59.823 37.037 0.00 0.00 0.00 1.40
1680 1880 4.042809 TCTCTGAAAATTAGTTCTGGCCCA 59.957 41.667 0.00 0.00 0.00 5.36
1695 1898 2.674380 CCACTGGAGTGCCCTTGC 60.674 66.667 0.91 0.00 44.34 4.01
1713 1916 1.136085 TGCGCTGTAATTTTGACTCGC 60.136 47.619 9.73 0.00 38.78 5.03
1714 1917 1.128692 GCGCTGTAATTTTGACTCGCT 59.871 47.619 0.00 0.00 36.92 4.93
1719 1922 5.163992 CGCTGTAATTTTGACTCGCTTAGAA 60.164 40.000 0.00 0.00 0.00 2.10
1730 1933 5.637810 TGACTCGCTTAGAACAAATTTCGAT 59.362 36.000 0.00 0.00 0.00 3.59
1736 1939 7.015289 CGCTTAGAACAAATTTCGATTCAGAA 58.985 34.615 8.37 0.00 0.00 3.02
1747 1950 8.906636 AATTTCGATTCAGAAATCACATGAAG 57.093 30.769 0.00 0.00 46.55 3.02
1834 2037 2.809446 TGAAGTATGAACGATCGCCTG 58.191 47.619 16.60 0.00 0.00 4.85
1842 2045 2.734606 TGAACGATCGCCTGTACTTTTG 59.265 45.455 16.60 0.00 0.00 2.44
1909 2120 9.612620 GAAGAATACTCCACAATTTGTAGTTTG 57.387 33.333 9.59 0.00 0.00 2.93
1973 2184 1.402968 CCTCAAATGACGCATCAAGGG 59.597 52.381 0.00 0.00 38.69 3.95
2014 2227 4.378459 CCACCGTGAAATTTTACTGAGAGC 60.378 45.833 10.75 0.00 0.00 4.09
2015 2228 3.751698 ACCGTGAAATTTTACTGAGAGCC 59.248 43.478 10.75 0.00 0.00 4.70
2016 2229 3.751175 CCGTGAAATTTTACTGAGAGCCA 59.249 43.478 10.92 0.00 0.00 4.75
2017 2230 4.396166 CCGTGAAATTTTACTGAGAGCCAT 59.604 41.667 10.92 0.00 0.00 4.40
2018 2231 5.447818 CCGTGAAATTTTACTGAGAGCCATC 60.448 44.000 10.92 0.00 0.00 3.51
2019 2232 5.563842 GTGAAATTTTACTGAGAGCCATCG 58.436 41.667 5.88 0.00 0.00 3.84
2020 2233 4.094887 TGAAATTTTACTGAGAGCCATCGC 59.905 41.667 0.00 0.00 0.00 4.58
2021 2234 2.760634 TTTTACTGAGAGCCATCGCA 57.239 45.000 0.00 0.00 37.52 5.10
2022 2235 2.760634 TTTACTGAGAGCCATCGCAA 57.239 45.000 0.00 0.00 34.64 4.85
2023 2236 2.988010 TTACTGAGAGCCATCGCAAT 57.012 45.000 0.00 0.00 34.64 3.56
2024 2237 2.988010 TACTGAGAGCCATCGCAATT 57.012 45.000 0.00 0.00 34.64 2.32
2025 2238 2.119801 ACTGAGAGCCATCGCAATTT 57.880 45.000 0.00 0.00 34.64 1.82
2026 2239 2.440409 ACTGAGAGCCATCGCAATTTT 58.560 42.857 0.00 0.00 34.64 1.82
2027 2240 2.821969 ACTGAGAGCCATCGCAATTTTT 59.178 40.909 0.00 0.00 34.64 1.94
2070 2294 3.638627 TGTACATGCTCAGTCAGGATAGG 59.361 47.826 0.00 0.00 30.44 2.57
2074 2298 3.107402 TGCTCAGTCAGGATAGGACTT 57.893 47.619 0.00 0.00 42.77 3.01
2090 2314 3.154710 GGACTTCCCCTGTTTCGAAATT 58.845 45.455 14.69 0.00 0.00 1.82
2136 2518 9.784376 ATAATATTTAGGAGCAGAGGGTGTATA 57.216 33.333 0.00 0.00 0.00 1.47
2147 2529 7.227156 AGCAGAGGGTGTATAATTTTCATAGG 58.773 38.462 0.00 0.00 0.00 2.57
2164 2546 6.239743 TTTCATAGGAATTTTGTGGGAAACCC 60.240 38.462 0.00 0.00 40.93 4.11
2165 2547 9.109120 TTTCATAGGAATTTTGTGGGAAACCCC 62.109 40.741 4.27 0.00 40.93 4.95
2182 2564 1.004918 CCACACCCACCGAGAGAAC 60.005 63.158 0.00 0.00 0.00 3.01
2219 2601 6.238842 CCAGCAGAATTTTCATATTCCGACAT 60.239 38.462 0.00 0.00 35.56 3.06
2252 2634 0.250295 CAGAAGTTCCGGAAGCCACA 60.250 55.000 19.50 0.00 0.00 4.17
2263 2645 1.076044 AAGCCACAGCCACCTTTGT 60.076 52.632 0.00 0.00 41.25 2.83
2276 2658 4.138290 CCACCTTTGTACACATGGTTACA 58.862 43.478 9.98 0.84 33.08 2.41
2277 2659 4.023536 CCACCTTTGTACACATGGTTACAC 60.024 45.833 9.98 0.00 33.08 2.90
2280 2662 5.830991 ACCTTTGTACACATGGTTACACAAT 59.169 36.000 7.90 0.00 31.96 2.71
2281 2663 6.999272 ACCTTTGTACACATGGTTACACAATA 59.001 34.615 7.90 0.00 31.96 1.90
2282 2664 7.502895 ACCTTTGTACACATGGTTACACAATAA 59.497 33.333 7.90 1.27 31.96 1.40
2283 2665 7.806014 CCTTTGTACACATGGTTACACAATAAC 59.194 37.037 7.90 0.00 0.00 1.89
2285 2667 6.221659 TGTACACATGGTTACACAATAACGA 58.778 36.000 0.00 0.00 0.00 3.85
2286 2668 6.704937 TGTACACATGGTTACACAATAACGAA 59.295 34.615 0.00 0.00 0.00 3.85
2287 2669 6.811253 ACACATGGTTACACAATAACGAAT 57.189 33.333 0.00 0.00 0.00 3.34
2390 2797 5.128499 CCTGGGATGTATGCAACCAATTTAA 59.872 40.000 12.05 0.00 39.08 1.52
2423 2833 6.952935 AAATGCTAGACGAGTAGACAAAAG 57.047 37.500 0.00 0.00 0.00 2.27
2443 2853 3.939066 AGCATCGCTTACAAGTAGGTTT 58.061 40.909 0.00 0.00 33.89 3.27
2524 2937 2.829003 CCAGCTGCTGCCATGAGG 60.829 66.667 23.86 4.79 40.80 3.86
2558 2971 0.038744 ACAAGGGGTCAAGCCAGATG 59.961 55.000 0.01 0.00 39.65 2.90
2570 2983 5.587844 GTCAAGCCAGATGAATTAGACACAT 59.412 40.000 0.00 0.00 0.00 3.21
2571 2984 6.763135 GTCAAGCCAGATGAATTAGACACATA 59.237 38.462 0.00 0.00 0.00 2.29
2572 2985 6.988580 TCAAGCCAGATGAATTAGACACATAG 59.011 38.462 0.00 0.00 0.00 2.23
2677 3094 4.819105 ATAGTAACAACTGGCACTGCTA 57.181 40.909 0.00 0.00 0.00 3.49
2678 3095 2.767505 AGTAACAACTGGCACTGCTAC 58.232 47.619 0.00 0.00 0.00 3.58
2679 3096 2.368875 AGTAACAACTGGCACTGCTACT 59.631 45.455 0.00 3.27 0.00 2.57
2680 3097 2.348411 AACAACTGGCACTGCTACTT 57.652 45.000 0.00 0.00 0.00 2.24
2681 3098 1.597742 ACAACTGGCACTGCTACTTG 58.402 50.000 0.00 3.39 0.00 3.16
2682 3099 0.239347 CAACTGGCACTGCTACTTGC 59.761 55.000 0.00 0.00 43.25 4.01
2753 3321 4.806286 GCCACTTGGTGTACATAAAGAGGT 60.806 45.833 24.49 8.29 34.17 3.85
2811 3387 1.187567 ACAGCCTGGTTTGATTGGCC 61.188 55.000 0.00 0.00 45.94 5.36
2818 3394 2.490903 CTGGTTTGATTGGCCTCTTCAG 59.509 50.000 3.32 0.00 0.00 3.02
2824 3400 4.038271 TGATTGGCCTCTTCAGTTCAAT 57.962 40.909 3.32 0.00 0.00 2.57
2830 3406 4.777896 TGGCCTCTTCAGTTCAATACTACT 59.222 41.667 3.32 0.00 34.56 2.57
2883 3459 9.221775 GTGAACGTGCTTGATAAAATAAATAGG 57.778 33.333 0.00 0.00 0.00 2.57
3052 3633 0.318699 GGGTTGAAACTTCTTGCGGC 60.319 55.000 0.00 0.00 0.00 6.53
3056 3637 3.297472 GTTGAAACTTCTTGCGGCTTAC 58.703 45.455 0.00 0.00 0.00 2.34
3074 3655 2.658807 ACCTGTCCCTTTCTTTCACC 57.341 50.000 0.00 0.00 0.00 4.02
3078 3659 1.133915 TGTCCCTTTCTTTCACCGCTT 60.134 47.619 0.00 0.00 0.00 4.68
3182 3765 8.940397 ATGGATATATGGTTCCTACTTTTTGG 57.060 34.615 0.00 0.00 32.95 3.28
3472 4080 1.263356 ACTGTTGCCTCGCCTACTAA 58.737 50.000 0.00 0.00 0.00 2.24
3706 4457 2.363276 ATCGTGGAGGTGGGCGTA 60.363 61.111 0.00 0.00 0.00 4.42
3820 4571 1.758783 TCATCATGATCTTCGCGTCG 58.241 50.000 4.86 0.00 0.00 5.12
4355 5460 9.480861 TTGCTATCCATATATACAAGCTCTAGT 57.519 33.333 0.00 0.00 0.00 2.57
4688 5967 5.724328 ACTTCGTAAGCATTTCTCTCATCA 58.276 37.500 0.00 0.00 37.18 3.07
4723 6002 8.044309 TCAGTTGATCATAGGAATCGGTAAAAA 58.956 33.333 0.00 0.00 0.00 1.94
4727 6006 9.839817 TTGATCATAGGAATCGGTAAAAATACA 57.160 29.630 0.00 0.00 0.00 2.29
4774 6055 0.621571 TATTCCTGCAGCTCCCCTGT 60.622 55.000 8.66 0.00 43.71 4.00
4852 6133 7.777095 CCAACTGGGTAAGCTATATATCTCTC 58.223 42.308 0.00 0.00 0.00 3.20
4853 6134 7.397476 CCAACTGGGTAAGCTATATATCTCTCA 59.603 40.741 0.00 0.00 0.00 3.27
4873 6154 9.887862 TCTCTCATTATATATATGCATCTCCCA 57.112 33.333 0.19 0.00 0.00 4.37
4900 6181 2.985896 TCTCAACTCCGGCCTAATTTG 58.014 47.619 0.00 0.00 0.00 2.32
4919 6207 0.455972 GTGTGTGTGTGTTGTGCCAC 60.456 55.000 0.00 0.00 35.86 5.01
5030 6318 9.469097 AAGACATACAAGTTCTACTCATAGACT 57.531 33.333 0.00 0.00 37.15 3.24
5031 6319 9.469097 AGACATACAAGTTCTACTCATAGACTT 57.531 33.333 0.00 0.00 37.15 3.01
5033 6321 9.244292 ACATACAAGTTCTACTCATAGACTTCA 57.756 33.333 0.00 0.00 37.15 3.02
5036 6324 7.777095 ACAAGTTCTACTCATAGACTTCATCC 58.223 38.462 0.00 0.00 37.15 3.51
5051 6339 1.196581 TCATCCACGACGCATTTTGTG 59.803 47.619 0.00 0.00 0.00 3.33
5053 6341 1.867166 TCCACGACGCATTTTGTGTA 58.133 45.000 0.00 0.00 41.77 2.90
5073 6362 5.698545 GTGTAGTGAAAACTGCAAGAGATCT 59.301 40.000 0.00 0.00 37.43 2.75
5155 6454 1.580059 ACCACGGTTACAGATGGGAT 58.420 50.000 8.31 0.00 36.47 3.85
5156 6455 1.209504 ACCACGGTTACAGATGGGATG 59.790 52.381 8.31 0.00 36.47 3.51
5157 6456 1.475034 CCACGGTTACAGATGGGATGG 60.475 57.143 0.00 0.00 0.00 3.51
5158 6457 1.209504 CACGGTTACAGATGGGATGGT 59.790 52.381 0.00 0.00 0.00 3.55
5159 6458 2.432874 CACGGTTACAGATGGGATGGTA 59.567 50.000 0.00 0.00 0.00 3.25
5160 6459 2.433239 ACGGTTACAGATGGGATGGTAC 59.567 50.000 0.00 0.00 0.00 3.34
5161 6460 2.698797 CGGTTACAGATGGGATGGTACT 59.301 50.000 0.00 0.00 0.00 2.73
5162 6461 3.134081 CGGTTACAGATGGGATGGTACTT 59.866 47.826 0.00 0.00 0.00 2.24
5266 6567 3.126001 TGGTGTGTGGATTTGACTCTC 57.874 47.619 0.00 0.00 0.00 3.20
5373 6674 5.287226 TCGACTGTTCTTTTCTACACCTTC 58.713 41.667 0.00 0.00 0.00 3.46
5378 6679 8.349568 ACTGTTCTTTTCTACACCTTCTTTTT 57.650 30.769 0.00 0.00 0.00 1.94
5400 6703 2.565841 GGTATGCTACTGCCTTCCAAG 58.434 52.381 0.00 0.00 38.71 3.61
5401 6704 1.943340 GTATGCTACTGCCTTCCAAGC 59.057 52.381 0.00 0.00 38.71 4.01
5402 6705 0.329261 ATGCTACTGCCTTCCAAGCA 59.671 50.000 0.00 0.00 46.30 3.91
5403 6706 0.329261 TGCTACTGCCTTCCAAGCAT 59.671 50.000 0.00 0.00 40.04 3.79
5404 6707 1.559219 TGCTACTGCCTTCCAAGCATA 59.441 47.619 0.00 0.00 40.04 3.14
5405 6708 2.026356 TGCTACTGCCTTCCAAGCATAA 60.026 45.455 0.00 0.00 40.04 1.90
5406 6709 3.217626 GCTACTGCCTTCCAAGCATAAT 58.782 45.455 0.00 0.00 40.04 1.28
5407 6710 3.004106 GCTACTGCCTTCCAAGCATAATG 59.996 47.826 0.00 0.00 40.04 1.90
5408 6711 1.753073 ACTGCCTTCCAAGCATAATGC 59.247 47.619 0.00 0.00 45.46 3.56
5409 6712 1.068127 CTGCCTTCCAAGCATAATGCC 59.932 52.381 0.00 0.00 46.52 4.40
5410 6713 1.113788 GCCTTCCAAGCATAATGCCA 58.886 50.000 0.00 0.00 46.52 4.92
5411 6714 1.202452 GCCTTCCAAGCATAATGCCAC 60.202 52.381 0.00 0.00 46.52 5.01
5412 6715 1.066002 CCTTCCAAGCATAATGCCACG 59.934 52.381 0.00 0.00 46.52 4.94
5413 6716 2.016318 CTTCCAAGCATAATGCCACGA 58.984 47.619 0.00 0.00 46.52 4.35
5414 6717 1.378531 TCCAAGCATAATGCCACGAC 58.621 50.000 0.00 0.00 46.52 4.34
5415 6718 1.093972 CCAAGCATAATGCCACGACA 58.906 50.000 0.00 0.00 46.52 4.35
5416 6719 1.472082 CCAAGCATAATGCCACGACAA 59.528 47.619 0.00 0.00 46.52 3.18
5417 6720 2.478370 CCAAGCATAATGCCACGACAAG 60.478 50.000 0.00 0.00 46.52 3.16
5418 6721 2.401583 AGCATAATGCCACGACAAGA 57.598 45.000 0.00 0.00 46.52 3.02
5419 6722 2.283298 AGCATAATGCCACGACAAGAG 58.717 47.619 0.00 0.00 46.52 2.85
5521 6833 6.074356 CGGCAAAAACAAAGGAAAGACTATTG 60.074 38.462 0.00 0.00 0.00 1.90
5651 6965 2.485814 GACTCTTGCATTTCGCTCCTTT 59.514 45.455 0.00 0.00 43.06 3.11
5730 7044 1.594331 GGAACTGGTCGTTTTGAGCT 58.406 50.000 0.00 0.00 45.46 4.09
5731 7045 1.947456 GGAACTGGTCGTTTTGAGCTT 59.053 47.619 0.00 0.00 45.46 3.74
5740 7054 4.406943 GTCGTTTTGAGCTTCCAATCATC 58.593 43.478 0.00 0.00 0.00 2.92
5757 7071 0.537188 ATCGACGGAAACCTCATGCT 59.463 50.000 0.00 0.00 0.00 3.79
5820 7134 1.890489 TGATCTCGTTCCAAACTCGGA 59.110 47.619 0.00 0.00 0.00 4.55
5821 7135 2.496070 TGATCTCGTTCCAAACTCGGAT 59.504 45.455 0.00 0.00 34.19 4.18
5828 7142 2.178912 TCCAAACTCGGATGGTGAAC 57.821 50.000 0.00 0.00 37.94 3.18
5850 7164 3.578716 CCTACACTGGAAGAGAAGGTGAA 59.421 47.826 0.00 0.00 37.43 3.18
5908 7223 1.819208 CGCAATTCGGCCATCCTCA 60.819 57.895 2.24 0.00 33.78 3.86
5909 7224 1.168407 CGCAATTCGGCCATCCTCAT 61.168 55.000 2.24 0.00 33.78 2.90
5910 7225 0.313043 GCAATTCGGCCATCCTCATG 59.687 55.000 2.24 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.340950 GGACCAAACATGTATACATTGGGG 59.659 45.833 28.18 22.08 36.53 4.96
1 2 4.340950 GGGACCAAACATGTATACATTGGG 59.659 45.833 28.18 20.18 36.53 4.12
2 3 5.514274 GGGACCAAACATGTATACATTGG 57.486 43.478 25.28 25.28 37.62 3.16
20 21 0.613777 AACGATGAGACAAGGGGGAC 59.386 55.000 0.00 0.00 0.00 4.46
21 22 2.108168 CTAACGATGAGACAAGGGGGA 58.892 52.381 0.00 0.00 0.00 4.81
22 23 1.139058 CCTAACGATGAGACAAGGGGG 59.861 57.143 0.00 0.00 0.00 5.40
23 24 1.139058 CCCTAACGATGAGACAAGGGG 59.861 57.143 0.00 0.00 0.00 4.79
24 25 2.108168 TCCCTAACGATGAGACAAGGG 58.892 52.381 0.00 0.00 36.72 3.95
25 26 2.496070 TGTCCCTAACGATGAGACAAGG 59.504 50.000 0.00 0.00 34.68 3.61
26 27 3.512680 GTGTCCCTAACGATGAGACAAG 58.487 50.000 0.00 0.00 39.04 3.16
27 28 2.232941 GGTGTCCCTAACGATGAGACAA 59.767 50.000 0.00 0.00 39.04 3.18
28 29 1.822990 GGTGTCCCTAACGATGAGACA 59.177 52.381 0.00 0.00 35.20 3.41
29 30 1.822990 TGGTGTCCCTAACGATGAGAC 59.177 52.381 0.00 0.00 0.00 3.36
30 31 2.225382 TGGTGTCCCTAACGATGAGA 57.775 50.000 0.00 0.00 0.00 3.27
31 32 2.233922 ACTTGGTGTCCCTAACGATGAG 59.766 50.000 0.00 0.00 0.00 2.90
32 33 2.253610 ACTTGGTGTCCCTAACGATGA 58.746 47.619 0.00 0.00 0.00 2.92
33 34 2.762535 ACTTGGTGTCCCTAACGATG 57.237 50.000 0.00 0.00 0.00 3.84
34 35 2.165030 CGTACTTGGTGTCCCTAACGAT 59.835 50.000 0.00 0.00 0.00 3.73
35 36 1.541147 CGTACTTGGTGTCCCTAACGA 59.459 52.381 0.00 0.00 0.00 3.85
36 37 1.986698 CGTACTTGGTGTCCCTAACG 58.013 55.000 0.00 0.00 0.00 3.18
37 38 1.718396 GCGTACTTGGTGTCCCTAAC 58.282 55.000 0.00 0.00 0.00 2.34
38 39 0.244450 CGCGTACTTGGTGTCCCTAA 59.756 55.000 0.00 0.00 0.00 2.69
39 40 0.895100 ACGCGTACTTGGTGTCCCTA 60.895 55.000 11.67 0.00 0.00 3.53
40 41 2.205152 ACGCGTACTTGGTGTCCCT 61.205 57.895 11.67 0.00 0.00 4.20
41 42 2.025418 CACGCGTACTTGGTGTCCC 61.025 63.158 13.44 0.00 0.00 4.46
42 43 0.389426 ATCACGCGTACTTGGTGTCC 60.389 55.000 13.44 0.00 33.51 4.02
43 44 0.713883 CATCACGCGTACTTGGTGTC 59.286 55.000 13.44 0.00 33.51 3.67
44 45 0.669318 CCATCACGCGTACTTGGTGT 60.669 55.000 13.44 0.00 33.51 4.16
45 46 0.389296 TCCATCACGCGTACTTGGTG 60.389 55.000 24.76 15.07 0.00 4.17
46 47 0.535335 ATCCATCACGCGTACTTGGT 59.465 50.000 24.76 14.56 0.00 3.67
47 48 1.651987 AATCCATCACGCGTACTTGG 58.348 50.000 21.77 21.77 0.00 3.61
48 49 4.493545 GGTTAAATCCATCACGCGTACTTG 60.494 45.833 13.44 9.93 0.00 3.16
49 50 3.619929 GGTTAAATCCATCACGCGTACTT 59.380 43.478 13.44 0.00 0.00 2.24
50 51 3.192466 GGTTAAATCCATCACGCGTACT 58.808 45.455 13.44 0.00 0.00 2.73
51 52 2.931325 TGGTTAAATCCATCACGCGTAC 59.069 45.455 13.44 1.44 31.96 3.67
52 53 3.248495 TGGTTAAATCCATCACGCGTA 57.752 42.857 13.44 0.28 31.96 4.42
53 54 2.102070 TGGTTAAATCCATCACGCGT 57.898 45.000 5.58 5.58 31.96 6.01
54 55 2.791158 GCTTGGTTAAATCCATCACGCG 60.791 50.000 3.53 3.53 37.33 6.01
55 56 2.791158 CGCTTGGTTAAATCCATCACGC 60.791 50.000 0.00 0.00 37.33 5.34
56 57 2.418628 ACGCTTGGTTAAATCCATCACG 59.581 45.455 0.00 0.00 37.33 4.35
57 58 3.181500 GGACGCTTGGTTAAATCCATCAC 60.181 47.826 0.00 0.00 37.33 3.06
58 59 3.013921 GGACGCTTGGTTAAATCCATCA 58.986 45.455 0.00 0.00 37.33 3.07
59 60 3.013921 TGGACGCTTGGTTAAATCCATC 58.986 45.455 0.00 0.00 37.33 3.51
60 61 2.752903 GTGGACGCTTGGTTAAATCCAT 59.247 45.455 0.00 0.00 38.45 3.41
61 62 2.156098 GTGGACGCTTGGTTAAATCCA 58.844 47.619 0.00 0.00 33.86 3.41
62 63 2.156098 TGTGGACGCTTGGTTAAATCC 58.844 47.619 0.00 0.00 0.00 3.01
63 64 2.812011 ACTGTGGACGCTTGGTTAAATC 59.188 45.455 0.00 0.00 0.00 2.17
64 65 2.858745 ACTGTGGACGCTTGGTTAAAT 58.141 42.857 0.00 0.00 0.00 1.40
65 66 2.335316 ACTGTGGACGCTTGGTTAAA 57.665 45.000 0.00 0.00 0.00 1.52
66 67 2.335316 AACTGTGGACGCTTGGTTAA 57.665 45.000 0.00 0.00 0.00 2.01
67 68 2.215196 GAAACTGTGGACGCTTGGTTA 58.785 47.619 0.00 0.00 0.00 2.85
68 69 1.021968 GAAACTGTGGACGCTTGGTT 58.978 50.000 0.00 0.00 0.00 3.67
69 70 0.107410 TGAAACTGTGGACGCTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
70 71 1.021202 TTGAAACTGTGGACGCTTGG 58.979 50.000 0.00 0.00 0.00 3.61
71 72 2.842208 TTTGAAACTGTGGACGCTTG 57.158 45.000 0.00 0.00 0.00 4.01
72 73 3.442273 TCTTTTTGAAACTGTGGACGCTT 59.558 39.130 0.00 0.00 0.00 4.68
73 74 3.013921 TCTTTTTGAAACTGTGGACGCT 58.986 40.909 0.00 0.00 0.00 5.07
74 75 3.414549 TCTTTTTGAAACTGTGGACGC 57.585 42.857 0.00 0.00 0.00 5.19
75 76 6.698359 TTTTTCTTTTTGAAACTGTGGACG 57.302 33.333 0.00 0.00 43.55 4.79
95 96 1.730451 CCCGTGGACGCTTGGTTTTT 61.730 55.000 0.00 0.00 38.18 1.94
96 97 2.190841 CCCGTGGACGCTTGGTTTT 61.191 57.895 0.00 0.00 38.18 2.43
97 98 2.593436 CCCGTGGACGCTTGGTTT 60.593 61.111 0.00 0.00 38.18 3.27
120 121 7.975750 ACTCCTAGAAAACGATTTATTTGAGC 58.024 34.615 9.55 0.00 0.00 4.26
163 167 1.908299 CAGGGCCGGCTTCCTTTTT 60.908 57.895 28.56 0.32 0.00 1.94
179 195 1.140161 CCATGAAATGCACGGCCAG 59.860 57.895 2.24 0.00 44.97 4.85
213 229 3.193263 ACAATTCTATCGAGCTGTGCTG 58.807 45.455 0.00 0.00 39.88 4.41
214 230 3.533606 ACAATTCTATCGAGCTGTGCT 57.466 42.857 0.00 0.00 43.88 4.40
215 231 4.606457 AAACAATTCTATCGAGCTGTGC 57.394 40.909 0.00 0.00 0.00 4.57
216 232 5.931532 ACAAAACAATTCTATCGAGCTGTG 58.068 37.500 0.00 0.00 0.00 3.66
227 243 5.404066 CGCGGGATTTAAACAAAACAATTCT 59.596 36.000 0.00 0.00 0.00 2.40
242 258 0.599204 CGTATGTAGGCGCGGGATTT 60.599 55.000 8.83 0.00 0.00 2.17
273 293 0.390860 CTAGCAGGGGAGTTCGATGG 59.609 60.000 0.00 0.00 0.00 3.51
330 350 1.503542 GCCATTTGGACTGCGTGAG 59.496 57.895 0.00 0.00 37.39 3.51
331 351 2.324330 CGCCATTTGGACTGCGTGA 61.324 57.895 0.00 0.00 41.95 4.35
332 352 2.176546 CGCCATTTGGACTGCGTG 59.823 61.111 0.00 0.00 41.95 5.34
413 433 4.029704 CGCAGCGTGTAAGTTTACAAAAA 58.970 39.130 6.65 0.00 44.46 1.94
415 435 3.241783 CGCAGCGTGTAAGTTTACAAA 57.758 42.857 6.65 0.00 44.46 2.83
461 482 1.491563 CCAGCGCAGTTCGTGTAAC 59.508 57.895 11.47 0.00 41.07 2.50
467 491 4.093952 CAAGCCCAGCGCAGTTCG 62.094 66.667 11.47 0.00 41.38 3.95
480 504 0.460987 CCTCCTCGTGATGTCCAAGC 60.461 60.000 0.00 0.00 0.00 4.01
482 506 1.186200 CTCCTCCTCGTGATGTCCAA 58.814 55.000 0.00 0.00 0.00 3.53
529 556 4.705337 AAACACGACAGATACTCCTCTC 57.295 45.455 0.00 0.00 0.00 3.20
530 557 4.523173 TCAAAACACGACAGATACTCCTCT 59.477 41.667 0.00 0.00 0.00 3.69
531 558 4.806330 TCAAAACACGACAGATACTCCTC 58.194 43.478 0.00 0.00 0.00 3.71
532 559 4.866508 TCAAAACACGACAGATACTCCT 57.133 40.909 0.00 0.00 0.00 3.69
533 560 4.330074 CCATCAAAACACGACAGATACTCC 59.670 45.833 0.00 0.00 0.00 3.85
534 561 5.062308 GTCCATCAAAACACGACAGATACTC 59.938 44.000 0.00 0.00 0.00 2.59
535 562 4.929808 GTCCATCAAAACACGACAGATACT 59.070 41.667 0.00 0.00 0.00 2.12
536 563 4.092968 GGTCCATCAAAACACGACAGATAC 59.907 45.833 0.00 0.00 0.00 2.24
537 564 4.020573 AGGTCCATCAAAACACGACAGATA 60.021 41.667 0.00 0.00 0.00 1.98
577 604 0.370273 CGTAACATGAAGCGGCAGAC 59.630 55.000 0.00 0.00 0.00 3.51
593 620 1.342672 GGGAAAGATGGGGGCTCGTA 61.343 60.000 0.00 0.00 0.00 3.43
604 631 0.786435 ACAGGGGCTTTGGGAAAGAT 59.214 50.000 0.16 0.00 41.02 2.40
621 648 2.102252 GGCACATGAAAACCAAGGAACA 59.898 45.455 0.00 0.00 0.00 3.18
680 707 2.095718 GCTCGGCAGGTTTTACTTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
713 741 2.813908 GCTTCTACGGCCCACACG 60.814 66.667 0.00 0.00 37.36 4.49
714 742 2.436115 GGCTTCTACGGCCCACAC 60.436 66.667 0.00 0.00 43.49 3.82
773 823 2.697644 AAGATCCCCCTGGCCCAG 60.698 66.667 2.91 2.91 0.00 4.45
774 824 3.023116 CAAGATCCCCCTGGCCCA 61.023 66.667 0.00 0.00 0.00 5.36
775 825 3.825623 CCAAGATCCCCCTGGCCC 61.826 72.222 0.00 0.00 0.00 5.80
776 826 4.529731 GCCAAGATCCCCCTGGCC 62.530 72.222 12.50 0.00 39.57 5.36
777 827 3.728292 CTGCCAAGATCCCCCTGGC 62.728 68.421 15.39 15.39 45.19 4.85
778 828 1.992519 CTCTGCCAAGATCCCCCTGG 61.993 65.000 0.00 0.00 0.00 4.45
779 829 1.277580 ACTCTGCCAAGATCCCCCTG 61.278 60.000 0.00 0.00 0.00 4.45
780 830 0.551131 AACTCTGCCAAGATCCCCCT 60.551 55.000 0.00 0.00 0.00 4.79
781 831 0.394899 CAACTCTGCCAAGATCCCCC 60.395 60.000 0.00 0.00 0.00 5.40
782 832 1.034292 GCAACTCTGCCAAGATCCCC 61.034 60.000 0.00 0.00 43.26 4.81
783 833 2.486796 GCAACTCTGCCAAGATCCC 58.513 57.895 0.00 0.00 43.26 3.85
793 843 4.099170 GCGGCAGCAGCAACTCTG 62.099 66.667 13.20 0.00 44.61 3.35
822 872 1.966901 ATATCGCGCCTGGTTGACCA 61.967 55.000 0.00 2.40 45.30 4.02
855 905 4.826733 TCTTTATAGAGCAGAGCAGAGAGG 59.173 45.833 0.00 0.00 0.00 3.69
856 906 6.262944 TCTTCTTTATAGAGCAGAGCAGAGAG 59.737 42.308 0.00 0.00 0.00 3.20
857 907 6.125719 TCTTCTTTATAGAGCAGAGCAGAGA 58.874 40.000 0.00 0.00 0.00 3.10
880 960 1.079750 GAGGCGTTGGACTGGTCTC 60.080 63.158 0.67 0.00 0.00 3.36
891 972 6.969993 AAGAGAGAGATATAAAGAGGCGTT 57.030 37.500 0.00 0.00 0.00 4.84
896 977 8.099364 AGAGCGAAAGAGAGAGATATAAAGAG 57.901 38.462 0.00 0.00 0.00 2.85
897 978 7.936847 AGAGAGCGAAAGAGAGAGATATAAAGA 59.063 37.037 0.00 0.00 0.00 2.52
898 979 8.099364 AGAGAGCGAAAGAGAGAGATATAAAG 57.901 38.462 0.00 0.00 0.00 1.85
901 982 7.004555 AGAGAGAGCGAAAGAGAGAGATATA 57.995 40.000 0.00 0.00 0.00 0.86
902 983 5.869579 AGAGAGAGCGAAAGAGAGAGATAT 58.130 41.667 0.00 0.00 0.00 1.63
903 984 5.070446 AGAGAGAGAGCGAAAGAGAGAGATA 59.930 44.000 0.00 0.00 0.00 1.98
904 985 4.130118 GAGAGAGAGCGAAAGAGAGAGAT 58.870 47.826 0.00 0.00 0.00 2.75
914 1008 0.808125 GTGCAGAGAGAGAGAGCGAA 59.192 55.000 0.00 0.00 0.00 4.70
917 1011 1.067516 GGATGTGCAGAGAGAGAGAGC 59.932 57.143 0.00 0.00 0.00 4.09
945 1039 3.704061 AGAGTAAAGAGAGGGAGATGTGC 59.296 47.826 0.00 0.00 0.00 4.57
959 1058 3.376546 GCCTTGAGCAATGGAGAGTAAAG 59.623 47.826 0.00 0.00 42.97 1.85
1057 1161 4.039339 AGGGAGAGAGAGATTGATTGCTT 58.961 43.478 0.00 0.00 0.00 3.91
1064 1168 3.139025 AGAGGAGAGGGAGAGAGAGATTG 59.861 52.174 0.00 0.00 0.00 2.67
1075 1179 0.631998 AGATGGGGAGAGGAGAGGGA 60.632 60.000 0.00 0.00 0.00 4.20
1076 1180 0.178935 GAGATGGGGAGAGGAGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
1077 1181 0.539438 CGAGATGGGGAGAGGAGAGG 60.539 65.000 0.00 0.00 0.00 3.69
1078 1182 1.178534 GCGAGATGGGGAGAGGAGAG 61.179 65.000 0.00 0.00 0.00 3.20
1079 1183 1.152652 GCGAGATGGGGAGAGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
1080 1184 1.152567 AGCGAGATGGGGAGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
1081 1185 1.456518 CAGCGAGATGGGGAGAGGA 60.457 63.158 0.00 0.00 0.00 3.71
1091 1195 7.201444 CGACTGTAATTTTCTTAACAGCGAGAT 60.201 37.037 11.67 0.00 42.44 2.75
1179 1283 8.848474 TGATTCTCTCTAAAACTTTTACTGGG 57.152 34.615 0.00 0.00 0.00 4.45
1188 1292 9.874205 CTCAGATTCTTGATTCTCTCTAAAACT 57.126 33.333 0.00 0.00 0.00 2.66
1189 1293 9.651913 ACTCAGATTCTTGATTCTCTCTAAAAC 57.348 33.333 0.00 0.00 0.00 2.43
1191 1295 9.650539 CAACTCAGATTCTTGATTCTCTCTAAA 57.349 33.333 0.00 0.00 0.00 1.85
1192 1296 8.256605 CCAACTCAGATTCTTGATTCTCTCTAA 58.743 37.037 0.00 0.00 0.00 2.10
1193 1297 7.398618 ACCAACTCAGATTCTTGATTCTCTCTA 59.601 37.037 0.00 0.00 0.00 2.43
1328 1442 1.486211 GAGGAGACGGAAGGGAATCA 58.514 55.000 0.00 0.00 0.00 2.57
1332 1454 2.754658 GCGAGGAGACGGAAGGGA 60.755 66.667 0.00 0.00 0.00 4.20
1491 1627 7.362142 GCAAAAAGTAGTAGGGAGAAATCAAGG 60.362 40.741 0.00 0.00 0.00 3.61
1518 1662 1.295423 CGAGAAAAGGGGAGCCGAA 59.705 57.895 0.00 0.00 0.00 4.30
1537 1681 4.652421 TTGCTGCATCTTCTAGAGAGAG 57.348 45.455 1.84 0.00 37.93 3.20
1538 1682 5.611128 AATTGCTGCATCTTCTAGAGAGA 57.389 39.130 1.84 6.97 37.93 3.10
1573 1773 2.354103 CGATCCTATGACGGGCATGATT 60.354 50.000 6.59 0.00 37.87 2.57
1589 1789 1.003545 CATCGCAAATCACACCGATCC 60.004 52.381 0.00 0.00 38.25 3.36
1645 1845 5.730296 ATTTTCAGAGAACGGAAGAGAGA 57.270 39.130 0.00 0.00 32.56 3.10
1647 1847 6.994221 ACTAATTTTCAGAGAACGGAAGAGA 58.006 36.000 0.00 0.00 32.56 3.10
1648 1848 7.600752 AGAACTAATTTTCAGAGAACGGAAGAG 59.399 37.037 0.00 0.00 32.56 2.85
1649 1849 7.385205 CAGAACTAATTTTCAGAGAACGGAAGA 59.615 37.037 0.00 0.00 32.56 2.87
1650 1850 7.360438 CCAGAACTAATTTTCAGAGAACGGAAG 60.360 40.741 0.00 0.00 32.56 3.46
1651 1851 6.426937 CCAGAACTAATTTTCAGAGAACGGAA 59.573 38.462 0.00 0.00 0.00 4.30
1652 1852 5.932303 CCAGAACTAATTTTCAGAGAACGGA 59.068 40.000 0.00 0.00 0.00 4.69
1669 1869 1.462238 ACTCCAGTGGGCCAGAACT 60.462 57.895 6.40 0.00 0.00 3.01
1695 1898 3.455619 AAGCGAGTCAAAATTACAGCG 57.544 42.857 0.00 0.00 0.00 5.18
1719 1922 8.298854 TCATGTGATTTCTGAATCGAAATTTGT 58.701 29.630 11.92 0.00 43.75 2.83
1730 1933 9.761504 TTATTTTTGCTTCATGTGATTTCTGAA 57.238 25.926 0.00 0.00 0.00 3.02
1736 1939 9.932207 TCATTCTTATTTTTGCTTCATGTGATT 57.068 25.926 0.00 0.00 0.00 2.57
1773 1976 1.416813 GCCATGCGAGAGAGACAACG 61.417 60.000 0.00 0.00 0.00 4.10
1797 2000 7.615757 TCATACTTCATAGTCAAGAGAAGGTGA 59.384 37.037 0.00 0.00 41.25 4.02
1842 2045 4.329256 GGCGAAACATAGGACAAAGTACTC 59.671 45.833 0.00 0.00 0.00 2.59
1875 2083 4.906618 TGTGGAGTATTCTTCCTGGTTTC 58.093 43.478 0.00 0.00 0.00 2.78
1973 2184 3.548770 GTGGTAATAAACAGGTAGGGGC 58.451 50.000 0.00 0.00 0.00 5.80
2030 2243 9.967346 GCATGTACAGTAATATTCTCTCAGTAA 57.033 33.333 0.33 0.00 0.00 2.24
2031 2244 9.355916 AGCATGTACAGTAATATTCTCTCAGTA 57.644 33.333 0.33 0.00 0.00 2.74
2032 2245 8.243961 AGCATGTACAGTAATATTCTCTCAGT 57.756 34.615 0.33 0.00 0.00 3.41
2033 2246 8.355913 TGAGCATGTACAGTAATATTCTCTCAG 58.644 37.037 0.33 0.00 0.00 3.35
2070 2294 4.848562 AAATTTCGAAACAGGGGAAGTC 57.151 40.909 13.81 0.00 0.00 3.01
2074 2298 4.453136 CGTCTTAAATTTCGAAACAGGGGA 59.547 41.667 13.81 6.66 0.00 4.81
2120 2502 5.437060 TGAAAATTATACACCCTCTGCTCC 58.563 41.667 0.00 0.00 0.00 4.70
2123 2505 7.224297 TCCTATGAAAATTATACACCCTCTGC 58.776 38.462 0.00 0.00 0.00 4.26
2136 2518 9.283768 GTTTCCCACAAAATTCCTATGAAAATT 57.716 29.630 0.00 0.00 33.32 1.82
2164 2546 1.004918 GTTCTCTCGGTGGGTGTGG 60.005 63.158 0.00 0.00 0.00 4.17
2165 2547 1.372997 CGTTCTCTCGGTGGGTGTG 60.373 63.158 0.00 0.00 0.00 3.82
2166 2548 2.571216 CCGTTCTCTCGGTGGGTGT 61.571 63.158 0.00 0.00 44.77 4.16
2167 2549 2.261671 CCGTTCTCTCGGTGGGTG 59.738 66.667 0.00 0.00 44.77 4.61
2170 2552 7.731666 GGAGAAATATCCGTTCTCTCGGTGG 62.732 52.000 13.00 0.00 46.78 4.61
2182 2564 3.475566 TTCTGCTGGGAGAAATATCCG 57.524 47.619 2.16 0.00 40.56 4.18
2187 2569 7.909485 ATATGAAAATTCTGCTGGGAGAAAT 57.091 32.000 8.48 0.00 35.60 2.17
2189 2571 6.322201 GGAATATGAAAATTCTGCTGGGAGAA 59.678 38.462 6.98 6.98 36.34 2.87
2196 2578 6.949352 ATGTCGGAATATGAAAATTCTGCT 57.051 33.333 1.36 0.00 40.57 4.24
2219 2601 9.893634 TCCGGAACTTCTGAAATAATTATGTTA 57.106 29.630 0.00 0.00 0.00 2.41
2235 2617 1.578206 GCTGTGGCTTCCGGAACTTC 61.578 60.000 14.35 6.26 35.22 3.01
2252 2634 1.144913 ACCATGTGTACAAAGGTGGCT 59.855 47.619 12.76 0.00 37.09 4.75
2263 2645 7.908827 ATTCGTTATTGTGTAACCATGTGTA 57.091 32.000 0.00 0.00 34.36 2.90
2276 2658 5.694458 GGTGAAAAAGGCAATTCGTTATTGT 59.306 36.000 12.31 0.00 44.52 2.71
2277 2659 5.925969 AGGTGAAAAAGGCAATTCGTTATTG 59.074 36.000 8.13 8.13 45.30 1.90
2280 2662 5.523438 AAGGTGAAAAAGGCAATTCGTTA 57.477 34.783 0.00 0.00 0.00 3.18
2281 2663 4.400529 AAGGTGAAAAAGGCAATTCGTT 57.599 36.364 0.00 0.00 0.00 3.85
2282 2664 5.722021 ATAAGGTGAAAAAGGCAATTCGT 57.278 34.783 0.00 0.00 0.00 3.85
2283 2665 6.644592 TGAAATAAGGTGAAAAAGGCAATTCG 59.355 34.615 0.00 0.00 0.00 3.34
2285 2667 8.744568 TTTGAAATAAGGTGAAAAAGGCAATT 57.255 26.923 0.00 0.00 0.00 2.32
2286 2668 8.744568 TTTTGAAATAAGGTGAAAAAGGCAAT 57.255 26.923 0.00 0.00 0.00 3.56
2287 2669 8.567285 TTTTTGAAATAAGGTGAAAAAGGCAA 57.433 26.923 0.00 0.00 0.00 4.52
2343 2750 1.700739 ACAGGGACGGATGTTTTACCA 59.299 47.619 0.00 0.00 0.00 3.25
2345 2752 4.124970 GGATACAGGGACGGATGTTTTAC 58.875 47.826 0.00 0.00 0.00 2.01
2423 2833 4.868734 ACTAAACCTACTTGTAAGCGATGC 59.131 41.667 0.00 0.00 0.00 3.91
2473 2886 4.040461 ACGGCTATTCCAATGTATAGCAGT 59.960 41.667 19.32 18.43 44.82 4.40
2474 2887 4.569943 ACGGCTATTCCAATGTATAGCAG 58.430 43.478 19.32 17.98 44.94 4.24
2479 2892 2.884639 GCCAACGGCTATTCCAATGTAT 59.115 45.455 0.00 0.00 46.69 2.29
2507 2920 2.829003 CCTCATGGCAGCAGCTGG 60.829 66.667 24.13 7.29 41.70 4.85
2524 2937 2.095059 CCCTTGTTAGCTGTGATGCAAC 60.095 50.000 0.00 0.00 34.99 4.17
2558 2971 8.144478 TCTGCTGGATTACTATGTGTCTAATTC 58.856 37.037 0.00 0.00 0.00 2.17
2570 2983 4.583073 TGACGCTAATCTGCTGGATTACTA 59.417 41.667 8.06 0.00 43.59 1.82
2571 2984 3.384789 TGACGCTAATCTGCTGGATTACT 59.615 43.478 8.06 0.00 43.59 2.24
2572 2985 3.491267 GTGACGCTAATCTGCTGGATTAC 59.509 47.826 8.06 5.96 43.59 1.89
2659 3076 2.767505 AGTAGCAGTGCCAGTTGTTAC 58.232 47.619 12.58 5.91 33.02 2.50
2703 3120 5.521010 CAGCTTGCAAGTGATTTCTCAAAAA 59.479 36.000 26.55 0.00 31.85 1.94
2704 3121 5.045215 CAGCTTGCAAGTGATTTCTCAAAA 58.955 37.500 26.55 0.00 31.85 2.44
2705 3122 4.613944 CAGCTTGCAAGTGATTTCTCAAA 58.386 39.130 26.55 0.00 31.85 2.69
2706 3123 3.551454 GCAGCTTGCAAGTGATTTCTCAA 60.551 43.478 26.55 0.00 44.26 3.02
2707 3124 2.030540 GCAGCTTGCAAGTGATTTCTCA 60.031 45.455 26.55 0.00 44.26 3.27
2708 3125 2.593257 GCAGCTTGCAAGTGATTTCTC 58.407 47.619 26.55 8.21 44.26 2.87
2709 3126 2.719426 GCAGCTTGCAAGTGATTTCT 57.281 45.000 26.55 11.80 44.26 2.52
2753 3321 5.220970 GGTTGAAAGTTGAAACAAGATCGGA 60.221 40.000 0.00 0.00 0.00 4.55
2824 3400 8.792633 ACGGTAACACACTTGTTTATAGTAGTA 58.207 33.333 0.00 0.00 43.89 1.82
2830 3406 6.760298 TGACAACGGTAACACACTTGTTTATA 59.240 34.615 0.00 0.00 43.89 0.98
3031 3611 1.407258 CCGCAAGAAGTTTCAACCCAA 59.593 47.619 0.00 0.00 43.02 4.12
3052 3633 4.072839 GGTGAAAGAAAGGGACAGGTAAG 58.927 47.826 0.00 0.00 0.00 2.34
3056 3637 1.523758 CGGTGAAAGAAAGGGACAGG 58.476 55.000 0.00 0.00 0.00 4.00
3074 3655 0.440371 GGCTTTCTTCTCACGAAGCG 59.560 55.000 0.00 0.00 45.01 4.68
3078 3659 1.623311 TCCATGGCTTTCTTCTCACGA 59.377 47.619 6.96 0.00 0.00 4.35
3165 3746 7.563724 TCTACTACCAAAAAGTAGGAACCAT 57.436 36.000 9.68 0.00 44.33 3.55
3214 3797 2.382882 TGAACCATGCACAAAACCTCA 58.617 42.857 0.00 0.00 0.00 3.86
3472 4080 7.817962 ACAAACAAACGTTATACTCTGCTAGAT 59.182 33.333 0.00 0.00 0.00 1.98
3706 4457 3.071479 GGTCACCATGTACACGATGTTT 58.929 45.455 0.00 0.00 0.00 2.83
4355 5460 4.142381 CGTCGATCAGGATTCAGGCATATA 60.142 45.833 0.00 0.00 0.00 0.86
4660 5939 6.531594 TGAGAGAAATGCTTACGAAGTATGTG 59.468 38.462 0.00 0.00 45.21 3.21
4688 5967 5.485353 TCCTATGATCAACTGAAGTGGAGTT 59.515 40.000 0.00 0.00 30.34 3.01
4723 6002 8.328758 TGTTGACTTGGATTAGGAAATCTGTAT 58.671 33.333 0.00 0.00 41.18 2.29
4725 6004 6.431234 GTGTTGACTTGGATTAGGAAATCTGT 59.569 38.462 0.00 0.00 41.18 3.41
4726 6005 6.127897 GGTGTTGACTTGGATTAGGAAATCTG 60.128 42.308 0.00 0.00 41.18 2.90
4727 6006 5.946377 GGTGTTGACTTGGATTAGGAAATCT 59.054 40.000 0.00 0.00 41.18 2.40
4733 6012 2.749621 GCAGGTGTTGACTTGGATTAGG 59.250 50.000 0.00 0.00 29.85 2.69
4866 6147 5.395768 CGGAGTTGAGATTAACTTGGGAGAT 60.396 44.000 0.00 0.00 40.78 2.75
4872 6153 2.678336 GGCCGGAGTTGAGATTAACTTG 59.322 50.000 5.05 0.00 40.78 3.16
4873 6154 2.572104 AGGCCGGAGTTGAGATTAACTT 59.428 45.455 5.05 0.00 40.78 2.66
4874 6155 2.188817 AGGCCGGAGTTGAGATTAACT 58.811 47.619 5.05 0.00 43.24 2.24
4877 6158 5.123227 CAAATTAGGCCGGAGTTGAGATTA 58.877 41.667 5.05 0.00 0.00 1.75
4900 6181 0.455972 GTGGCACAACACACACACAC 60.456 55.000 13.86 0.00 44.16 3.82
4919 6207 1.202348 ACGATGCAGACCTGAAGATCG 60.202 52.381 17.29 17.29 39.47 3.69
5015 6303 6.038382 TCGTGGATGAAGTCTATGAGTAGAAC 59.962 42.308 0.00 0.00 38.62 3.01
5030 6318 1.876799 ACAAAATGCGTCGTGGATGAA 59.123 42.857 0.00 0.00 0.00 2.57
5031 6319 1.196581 CACAAAATGCGTCGTGGATGA 59.803 47.619 0.00 0.00 0.00 2.92
5033 6321 1.234821 ACACAAAATGCGTCGTGGAT 58.765 45.000 7.69 0.00 33.62 3.41
5036 6324 2.219903 TCACTACACAAAATGCGTCGTG 59.780 45.455 0.00 2.48 30.42 4.35
5051 6339 6.793492 AAGATCTCTTGCAGTTTTCACTAC 57.207 37.500 0.00 0.00 34.38 2.73
5053 6341 6.705863 AAAAGATCTCTTGCAGTTTTCACT 57.294 33.333 0.00 0.00 36.12 3.41
5073 6362 8.790718 AGAGAGTTTGTAGTAGACATCGTAAAA 58.209 33.333 0.00 0.00 38.07 1.52
5155 6454 4.658435 ACCATATGCATCTACCAAGTACCA 59.342 41.667 0.19 0.00 0.00 3.25
5156 6455 5.221641 TGACCATATGCATCTACCAAGTACC 60.222 44.000 0.19 0.00 0.00 3.34
5157 6456 5.853936 TGACCATATGCATCTACCAAGTAC 58.146 41.667 0.19 0.00 0.00 2.73
5158 6457 5.838521 TCTGACCATATGCATCTACCAAGTA 59.161 40.000 0.19 0.00 0.00 2.24
5159 6458 4.655649 TCTGACCATATGCATCTACCAAGT 59.344 41.667 0.19 0.00 0.00 3.16
5160 6459 5.011431 TCTCTGACCATATGCATCTACCAAG 59.989 44.000 0.19 0.00 0.00 3.61
5161 6460 4.901250 TCTCTGACCATATGCATCTACCAA 59.099 41.667 0.19 0.00 0.00 3.67
5162 6461 4.482990 TCTCTGACCATATGCATCTACCA 58.517 43.478 0.19 0.00 0.00 3.25
5266 6567 3.564644 AGATTGTCGATCCTACAGTACCG 59.435 47.826 0.00 0.00 35.21 4.02
5373 6674 3.356290 AGGCAGTAGCATACCCAAAAAG 58.644 45.455 0.00 0.00 44.47 2.27
5378 6679 0.837272 GGAAGGCAGTAGCATACCCA 59.163 55.000 0.00 0.00 44.47 4.51
5400 6703 2.009774 ACTCTTGTCGTGGCATTATGC 58.990 47.619 8.93 8.93 44.08 3.14
5401 6704 4.685169 AAACTCTTGTCGTGGCATTATG 57.315 40.909 0.00 0.00 0.00 1.90
5402 6705 5.705609 AAAAACTCTTGTCGTGGCATTAT 57.294 34.783 0.00 0.00 0.00 1.28
5447 6750 8.931385 TCTTCTTAATTAATGAAATGGCAAGC 57.069 30.769 0.00 0.00 0.00 4.01
5521 6833 4.734917 ACTGAGTACTCTTATGTCGCAAC 58.265 43.478 23.01 0.00 0.00 4.17
5576 6890 3.738982 TGTTGCGAAGATCAAAGAGGAA 58.261 40.909 0.00 0.00 0.00 3.36
5651 6965 2.552315 GCTTGTCTCGTGGGAAATTTGA 59.448 45.455 0.00 0.00 0.00 2.69
5730 7044 2.027561 AGGTTTCCGTCGATGATTGGAA 60.028 45.455 6.11 4.21 38.67 3.53
5731 7045 1.553248 AGGTTTCCGTCGATGATTGGA 59.447 47.619 6.11 0.00 0.00 3.53
5740 7054 1.970917 GCAGCATGAGGTTTCCGTCG 61.971 60.000 0.00 0.00 39.69 5.12
5757 7071 1.655484 CAATCTACAGCGACATGGCA 58.345 50.000 0.00 0.00 34.64 4.92
5764 7078 0.829990 TCATGGCCAATCTACAGCGA 59.170 50.000 10.96 0.00 0.00 4.93
5820 7134 3.248024 TCTTCCAGTGTAGGTTCACCAT 58.752 45.455 0.00 0.00 38.91 3.55
5821 7135 2.632996 CTCTTCCAGTGTAGGTTCACCA 59.367 50.000 0.00 0.00 38.91 4.17
5828 7142 3.165875 TCACCTTCTCTTCCAGTGTAGG 58.834 50.000 0.00 0.00 0.00 3.18
5908 7223 2.514592 CCGATCGGCTGCAACCAT 60.515 61.111 23.37 0.00 0.00 3.55
5978 7295 2.451493 TGGAAGTCTTGGGCCCCA 60.451 61.111 22.27 7.58 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.