Multiple sequence alignment - TraesCS7D01G309200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G309200 chr7D 100.000 5712 0 0 1 5712 392267693 392261982 0.000000e+00 10549
1 TraesCS7D01G309200 chr7D 86.822 387 51 0 3079 3465 392746506 392746120 3.160000e-117 433
2 TraesCS7D01G309200 chr7D 83.208 399 65 2 3591 3988 392746116 392745719 1.170000e-96 364
3 TraesCS7D01G309200 chr7D 92.174 230 17 1 67 296 392362247 392362475 1.990000e-84 324
4 TraesCS7D01G309200 chr7D 80.488 287 52 3 3702 3986 104748591 104748307 3.470000e-52 217
5 TraesCS7D01G309200 chr7D 87.037 162 19 2 2729 2889 392746752 392746592 1.260000e-41 182
6 TraesCS7D01G309200 chr7D 73.978 465 92 18 4076 4530 392745623 392745178 1.650000e-35 161
7 TraesCS7D01G309200 chr7D 85.821 134 19 0 2759 2892 104749604 104749471 5.970000e-30 143
8 TraesCS7D01G309200 chr7B 90.772 4042 165 77 1760 5712 388598941 388595019 0.000000e+00 5206
9 TraesCS7D01G309200 chr7B 89.273 1445 68 28 297 1699 388600361 388598962 0.000000e+00 1729
10 TraesCS7D01G309200 chr7B 86.822 387 51 0 3079 3465 388954610 388954224 3.160000e-117 433
11 TraesCS7D01G309200 chr7B 82.957 399 66 2 3591 3988 388954220 388953823 5.440000e-95 359
12 TraesCS7D01G309200 chr7B 88.976 254 22 6 48 299 161901035 161901284 5.560000e-80 309
13 TraesCS7D01G309200 chr7B 86.420 162 20 2 2729 2889 388954878 388954718 5.880000e-40 176
14 TraesCS7D01G309200 chr7B 74.098 471 87 25 4076 4528 388953684 388953231 1.650000e-35 161
15 TraesCS7D01G309200 chr7B 87.023 131 17 0 2759 2889 63170254 63170384 1.280000e-31 148
16 TraesCS7D01G309200 chr7A 90.032 3802 189 77 297 4026 443967585 443963902 0.000000e+00 4747
17 TraesCS7D01G309200 chr7A 96.634 1010 28 5 4028 5036 443963717 443962713 0.000000e+00 1672
18 TraesCS7D01G309200 chr7A 88.114 387 46 0 3079 3465 444793323 444792937 1.450000e-125 460
19 TraesCS7D01G309200 chr7A 83.709 399 63 2 3591 3988 444792933 444792536 5.400000e-100 375
20 TraesCS7D01G309200 chr7A 86.149 296 37 3 1 295 710079444 710079736 3.320000e-82 316
21 TraesCS7D01G309200 chr7A 89.020 255 18 5 5112 5360 443962712 443962462 2.000000e-79 307
22 TraesCS7D01G309200 chr7A 90.129 233 21 2 65 296 709999303 709999072 9.300000e-78 302
23 TraesCS7D01G309200 chr7A 88.302 265 7 5 5472 5712 443962333 443962069 4.330000e-76 296
24 TraesCS7D01G309200 chr7A 88.272 162 17 2 2729 2889 444793566 444793406 5.840000e-45 193
25 TraesCS7D01G309200 chr7A 77.143 280 39 17 4262 4530 444792227 444791962 7.720000e-29 139
26 TraesCS7D01G309200 chr2B 83.812 383 62 0 3080 3462 784718509 784718127 1.170000e-96 364
27 TraesCS7D01G309200 chr2B 91.045 268 22 2 32 298 181719235 181719501 1.510000e-95 361
28 TraesCS7D01G309200 chr2B 82.963 405 61 8 3588 3988 784717925 784717525 5.440000e-95 359
29 TraesCS7D01G309200 chr2B 81.622 185 34 0 2705 2889 784718798 784718614 2.760000e-33 154
30 TraesCS7D01G309200 chr2D 82.426 404 65 6 3588 3988 648636161 648635761 1.180000e-91 348
31 TraesCS7D01G309200 chr2D 83.333 132 22 0 2758 2889 648636971 648636840 7.770000e-24 122
32 TraesCS7D01G309200 chr6B 86.799 303 33 7 1 299 685237911 685238210 1.190000e-86 331
33 TraesCS7D01G309200 chr6B 89.764 254 22 3 46 296 685210126 685209874 7.140000e-84 322
34 TraesCS7D01G309200 chr2A 81.683 404 66 8 3588 3987 775748271 775748670 4.270000e-86 329
35 TraesCS7D01G309200 chr3A 89.655 232 20 4 70 299 465530957 465531186 5.600000e-75 292
36 TraesCS7D01G309200 chr1B 90.698 215 19 1 32 246 217557101 217557314 9.370000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G309200 chr7D 392261982 392267693 5711 True 10549.000000 10549 100.00000 1 5712 1 chr7D.!!$R1 5711
1 TraesCS7D01G309200 chr7D 392745178 392746752 1574 True 285.000000 433 82.76125 2729 4530 4 chr7D.!!$R3 1801
2 TraesCS7D01G309200 chr7B 388595019 388600361 5342 True 3467.500000 5206 90.02250 297 5712 2 chr7B.!!$R1 5415
3 TraesCS7D01G309200 chr7B 388953231 388954878 1647 True 282.250000 433 82.57425 2729 4528 4 chr7B.!!$R2 1799
4 TraesCS7D01G309200 chr7A 443962069 443967585 5516 True 1755.500000 4747 90.99700 297 5712 4 chr7A.!!$R2 5415
5 TraesCS7D01G309200 chr7A 444791962 444793566 1604 True 291.750000 460 84.30950 2729 4530 4 chr7A.!!$R3 1801
6 TraesCS7D01G309200 chr2B 784717525 784718798 1273 True 292.333333 364 82.79900 2705 3988 3 chr2B.!!$R1 1283
7 TraesCS7D01G309200 chr2D 648635761 648636971 1210 True 235.000000 348 82.87950 2758 3988 2 chr2D.!!$R1 1230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.040646 TGGACCGTAGATGACCACCT 59.959 55.000 0.00 0.0 0.00 4.00 F
1232 1278 0.037790 AGAGAGGTGTGAAAGAGCGC 60.038 55.000 0.00 0.0 30.22 5.92 F
1234 1280 0.106708 AGAGGTGTGAAAGAGCGCAA 59.893 50.000 11.47 0.0 30.22 4.85 F
2490 2584 0.107410 TGACAAGTCAACTGCCCGTT 60.107 50.000 0.00 0.0 36.53 4.44 F
3411 3544 0.543174 ACTTCGTCCTCTCCCAGCTT 60.543 55.000 0.00 0.0 0.00 3.74 F
3689 3901 1.152419 TCCAGGTCAGGTGTTCGGA 60.152 57.895 0.00 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 1693 0.599204 GCGAGGGAACACTGTTTCGA 60.599 55.0 15.48 0.00 0.00 3.71 R
2984 3109 0.460284 CCCCGCTGTGAGTATGACAC 60.460 60.0 0.00 0.00 0.00 3.67 R
3133 3266 0.994247 ATCTCCACCATCTGCCACAA 59.006 50.0 0.00 0.00 0.00 3.33 R
3881 4093 0.029167 TGTTGTCGTCGACGCTGTTA 59.971 50.0 32.19 12.84 39.60 2.41 R
4432 4855 0.035056 AGGCAGCCATGACCAGTTAC 60.035 55.0 15.80 0.00 33.44 2.50 R
4833 5257 0.037605 AAACTAAGCAGACCGTCCGG 60.038 55.0 3.76 3.76 42.03 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.974438 ACCAGGCAGGGGGACGAA 62.974 66.667 0.00 0.00 43.89 3.85
34 35 4.410400 CCAGGCAGGGGGACGAAC 62.410 72.222 0.00 0.00 0.00 3.95
35 36 4.760047 CAGGCAGGGGGACGAACG 62.760 72.222 0.00 0.00 0.00 3.95
37 38 3.384532 GGCAGGGGGACGAACGTA 61.385 66.667 0.00 0.00 0.00 3.57
38 39 2.658422 GCAGGGGGACGAACGTAA 59.342 61.111 0.00 0.00 0.00 3.18
39 40 1.004679 GCAGGGGGACGAACGTAAA 60.005 57.895 0.00 0.00 0.00 2.01
40 41 0.392060 GCAGGGGGACGAACGTAAAT 60.392 55.000 0.00 0.00 0.00 1.40
41 42 1.947212 GCAGGGGGACGAACGTAAATT 60.947 52.381 0.00 0.00 0.00 1.82
42 43 2.004733 CAGGGGGACGAACGTAAATTC 58.995 52.381 0.00 0.00 0.00 2.17
53 54 5.324696 GAACGTAAATTCGACGATTTTGC 57.675 39.130 21.76 19.69 42.98 3.68
54 55 4.392619 ACGTAAATTCGACGATTTTGCA 57.607 36.364 23.44 8.20 42.98 4.08
55 56 4.774586 ACGTAAATTCGACGATTTTGCAA 58.225 34.783 23.44 0.00 42.98 4.08
56 57 5.206299 ACGTAAATTCGACGATTTTGCAAA 58.794 33.333 23.44 8.05 42.98 3.68
57 58 5.681982 ACGTAAATTCGACGATTTTGCAAAA 59.318 32.000 25.76 25.76 42.98 2.44
58 59 6.196724 ACGTAAATTCGACGATTTTGCAAAAA 59.803 30.769 27.10 10.42 42.98 1.94
76 77 3.372123 AAAAACCCGCATTCCCCG 58.628 55.556 0.00 0.00 0.00 5.73
77 78 2.279810 AAAAACCCGCATTCCCCGG 61.280 57.895 0.00 0.00 45.17 5.73
83 84 2.108157 CGCATTCCCCGGAATCGA 59.892 61.111 0.73 0.00 42.30 3.59
84 85 1.301716 CGCATTCCCCGGAATCGAT 60.302 57.895 0.73 0.00 42.30 3.59
85 86 1.291877 CGCATTCCCCGGAATCGATC 61.292 60.000 0.73 0.00 42.30 3.69
86 87 1.291877 GCATTCCCCGGAATCGATCG 61.292 60.000 9.36 9.36 42.30 3.69
87 88 0.670546 CATTCCCCGGAATCGATCGG 60.671 60.000 16.41 16.48 42.30 4.18
92 93 4.635925 CGGAATCGATCGGACCAG 57.364 61.111 16.41 8.83 39.00 4.00
93 94 1.007271 CGGAATCGATCGGACCAGG 60.007 63.158 16.41 1.67 39.00 4.45
94 95 1.367840 GGAATCGATCGGACCAGGG 59.632 63.158 16.41 0.00 0.00 4.45
95 96 1.301009 GAATCGATCGGACCAGGGC 60.301 63.158 16.41 0.00 0.00 5.19
96 97 3.151958 AATCGATCGGACCAGGGCG 62.152 63.158 16.41 0.00 0.00 6.13
98 99 4.570663 CGATCGGACCAGGGCGTC 62.571 72.222 7.38 0.00 0.00 5.19
99 100 3.148279 GATCGGACCAGGGCGTCT 61.148 66.667 0.00 0.00 33.07 4.18
100 101 3.432051 GATCGGACCAGGGCGTCTG 62.432 68.421 0.00 0.00 43.00 3.51
107 108 3.625897 CAGGGCGTCTGGTGGTGA 61.626 66.667 0.00 0.00 39.76 4.02
108 109 3.314331 AGGGCGTCTGGTGGTGAG 61.314 66.667 0.00 0.00 0.00 3.51
110 111 4.008933 GGCGTCTGGTGGTGAGCT 62.009 66.667 0.00 0.00 0.00 4.09
111 112 2.740055 GCGTCTGGTGGTGAGCTG 60.740 66.667 0.00 0.00 0.00 4.24
112 113 2.047844 CGTCTGGTGGTGAGCTGG 60.048 66.667 0.00 0.00 0.00 4.85
113 114 2.359230 GTCTGGTGGTGAGCTGGC 60.359 66.667 0.00 0.00 0.00 4.85
114 115 4.007644 TCTGGTGGTGAGCTGGCG 62.008 66.667 0.00 0.00 0.00 5.69
118 119 4.314440 GTGGTGAGCTGGCGGTCA 62.314 66.667 0.00 7.04 44.73 4.02
122 123 2.669569 TGAGCTGGCGGTCAAAGC 60.670 61.111 0.00 0.00 44.03 3.51
132 133 3.723348 GTCAAAGCCCGCGTGGAC 61.723 66.667 18.79 4.32 37.49 4.02
145 146 2.110213 TGGACGTGCCAGTCAACC 59.890 61.111 4.04 0.00 43.33 3.77
146 147 3.041940 GGACGTGCCAGTCAACCG 61.042 66.667 0.00 0.00 42.62 4.44
147 148 3.712881 GACGTGCCAGTCAACCGC 61.713 66.667 0.00 0.00 40.65 5.68
150 151 2.904866 GTGCCAGTCAACCGCCAA 60.905 61.111 0.00 0.00 0.00 4.52
151 152 2.124109 TGCCAGTCAACCGCCAAA 60.124 55.556 0.00 0.00 0.00 3.28
152 153 1.530419 TGCCAGTCAACCGCCAAAT 60.530 52.632 0.00 0.00 0.00 2.32
153 154 1.212751 GCCAGTCAACCGCCAAATC 59.787 57.895 0.00 0.00 0.00 2.17
154 155 1.523154 GCCAGTCAACCGCCAAATCA 61.523 55.000 0.00 0.00 0.00 2.57
155 156 0.523072 CCAGTCAACCGCCAAATCAG 59.477 55.000 0.00 0.00 0.00 2.90
156 157 0.109597 CAGTCAACCGCCAAATCAGC 60.110 55.000 0.00 0.00 0.00 4.26
157 158 0.537143 AGTCAACCGCCAAATCAGCA 60.537 50.000 0.00 0.00 0.00 4.41
158 159 0.387239 GTCAACCGCCAAATCAGCAC 60.387 55.000 0.00 0.00 0.00 4.40
159 160 1.442520 CAACCGCCAAATCAGCACG 60.443 57.895 0.00 0.00 0.00 5.34
160 161 1.896660 AACCGCCAAATCAGCACGT 60.897 52.632 0.00 0.00 0.00 4.49
161 162 0.604243 AACCGCCAAATCAGCACGTA 60.604 50.000 0.00 0.00 0.00 3.57
162 163 1.296056 ACCGCCAAATCAGCACGTAC 61.296 55.000 0.00 0.00 0.00 3.67
163 164 1.058748 CGCCAAATCAGCACGTACG 59.941 57.895 15.01 15.01 0.00 3.67
164 165 1.623081 CGCCAAATCAGCACGTACGT 61.623 55.000 16.72 16.72 0.00 3.57
165 166 1.352114 GCCAAATCAGCACGTACGTA 58.648 50.000 22.34 5.72 0.00 3.57
166 167 1.323534 GCCAAATCAGCACGTACGTAG 59.676 52.381 22.34 16.04 0.00 3.51
167 168 2.871133 CCAAATCAGCACGTACGTAGA 58.129 47.619 22.34 18.72 0.00 2.59
168 169 2.852413 CCAAATCAGCACGTACGTAGAG 59.148 50.000 22.34 13.22 0.00 2.43
169 170 2.846039 AATCAGCACGTACGTAGAGG 57.154 50.000 22.34 9.95 0.00 3.69
170 171 2.034104 ATCAGCACGTACGTAGAGGA 57.966 50.000 22.34 15.94 0.00 3.71
171 172 1.812235 TCAGCACGTACGTAGAGGAA 58.188 50.000 22.34 1.92 0.00 3.36
172 173 2.153645 TCAGCACGTACGTAGAGGAAA 58.846 47.619 22.34 0.25 0.00 3.13
173 174 2.553602 TCAGCACGTACGTAGAGGAAAA 59.446 45.455 22.34 0.00 0.00 2.29
174 175 2.660236 CAGCACGTACGTAGAGGAAAAC 59.340 50.000 22.34 2.41 0.00 2.43
175 176 1.645751 GCACGTACGTAGAGGAAAACG 59.354 52.381 22.34 5.62 44.47 3.60
185 186 5.850931 CGTAGAGGAAAACGTATTTTGGAC 58.149 41.667 0.00 0.00 38.17 4.02
186 187 5.163923 CGTAGAGGAAAACGTATTTTGGACC 60.164 44.000 0.00 0.00 38.17 4.46
187 188 3.749609 AGAGGAAAACGTATTTTGGACCG 59.250 43.478 0.00 0.00 38.17 4.79
188 189 3.479489 AGGAAAACGTATTTTGGACCGT 58.521 40.909 0.00 0.00 38.17 4.83
189 190 4.640364 AGGAAAACGTATTTTGGACCGTA 58.360 39.130 0.00 0.00 38.17 4.02
190 191 4.692155 AGGAAAACGTATTTTGGACCGTAG 59.308 41.667 0.00 0.00 38.17 3.51
191 192 4.690280 GGAAAACGTATTTTGGACCGTAGA 59.310 41.667 0.00 0.00 38.17 2.59
192 193 5.352293 GGAAAACGTATTTTGGACCGTAGAT 59.648 40.000 0.00 0.00 38.17 1.98
193 194 5.789710 AAACGTATTTTGGACCGTAGATG 57.210 39.130 0.00 0.00 32.49 2.90
194 195 4.724074 ACGTATTTTGGACCGTAGATGA 57.276 40.909 0.00 0.00 0.00 2.92
195 196 4.427312 ACGTATTTTGGACCGTAGATGAC 58.573 43.478 0.00 0.00 0.00 3.06
196 197 3.800506 CGTATTTTGGACCGTAGATGACC 59.199 47.826 0.00 0.00 0.00 4.02
197 198 3.992943 ATTTTGGACCGTAGATGACCA 57.007 42.857 0.00 0.00 0.00 4.02
198 199 2.754946 TTTGGACCGTAGATGACCAC 57.245 50.000 0.00 0.00 0.00 4.16
199 200 0.899720 TTGGACCGTAGATGACCACC 59.100 55.000 0.00 0.00 0.00 4.61
200 201 0.040646 TGGACCGTAGATGACCACCT 59.959 55.000 0.00 0.00 0.00 4.00
201 202 0.460311 GGACCGTAGATGACCACCTG 59.540 60.000 0.00 0.00 0.00 4.00
202 203 0.460311 GACCGTAGATGACCACCTGG 59.540 60.000 0.00 0.00 42.17 4.45
203 204 0.976073 ACCGTAGATGACCACCTGGG 60.976 60.000 0.00 0.00 44.81 4.45
204 205 0.686441 CCGTAGATGACCACCTGGGA 60.686 60.000 0.00 0.00 41.15 4.37
205 206 0.460311 CGTAGATGACCACCTGGGAC 59.540 60.000 0.00 0.00 41.15 4.46
206 207 1.568504 GTAGATGACCACCTGGGACA 58.431 55.000 0.00 0.00 45.30 4.02
207 208 1.906574 GTAGATGACCACCTGGGACAA 59.093 52.381 0.00 0.00 44.41 3.18
208 209 1.444933 AGATGACCACCTGGGACAAA 58.555 50.000 0.00 0.00 44.41 2.83
209 210 1.995542 AGATGACCACCTGGGACAAAT 59.004 47.619 0.00 0.00 44.41 2.32
210 211 2.379907 AGATGACCACCTGGGACAAATT 59.620 45.455 0.00 0.00 44.41 1.82
211 212 1.993956 TGACCACCTGGGACAAATTG 58.006 50.000 0.00 0.00 38.41 2.32
212 213 1.216678 TGACCACCTGGGACAAATTGT 59.783 47.619 0.00 0.00 38.41 2.71
213 214 2.443632 TGACCACCTGGGACAAATTGTA 59.556 45.455 0.00 0.00 38.41 2.41
214 215 3.081804 GACCACCTGGGACAAATTGTAG 58.918 50.000 0.00 0.00 38.70 2.74
215 216 2.225017 ACCACCTGGGACAAATTGTAGG 60.225 50.000 10.89 10.89 38.70 3.18
216 217 2.041081 CCACCTGGGACAAATTGTAGGA 59.959 50.000 17.56 0.00 38.70 2.94
217 218 3.081804 CACCTGGGACAAATTGTAGGAC 58.918 50.000 17.56 0.00 38.70 3.85
218 219 2.986728 ACCTGGGACAAATTGTAGGACT 59.013 45.455 17.56 0.00 38.70 3.85
219 220 3.244911 ACCTGGGACAAATTGTAGGACTG 60.245 47.826 17.56 5.09 38.70 3.51
220 221 3.244911 CCTGGGACAAATTGTAGGACTGT 60.245 47.826 7.48 0.00 38.70 3.55
221 222 4.019681 CCTGGGACAAATTGTAGGACTGTA 60.020 45.833 7.48 0.00 38.70 2.74
222 223 5.339200 CCTGGGACAAATTGTAGGACTGTAT 60.339 44.000 7.48 0.00 38.70 2.29
223 224 6.134535 TGGGACAAATTGTAGGACTGTATT 57.865 37.500 0.00 0.00 31.92 1.89
224 225 6.548321 TGGGACAAATTGTAGGACTGTATTT 58.452 36.000 0.00 0.00 31.92 1.40
225 226 7.007723 TGGGACAAATTGTAGGACTGTATTTT 58.992 34.615 0.00 0.00 31.92 1.82
226 227 7.040062 TGGGACAAATTGTAGGACTGTATTTTG 60.040 37.037 0.00 0.00 31.92 2.44
227 228 7.312899 GGACAAATTGTAGGACTGTATTTTGG 58.687 38.462 0.00 0.00 0.00 3.28
228 229 7.227049 ACAAATTGTAGGACTGTATTTTGGG 57.773 36.000 0.00 0.00 0.00 4.12
229 230 6.780522 ACAAATTGTAGGACTGTATTTTGGGT 59.219 34.615 0.00 0.00 0.00 4.51
230 231 7.945664 ACAAATTGTAGGACTGTATTTTGGGTA 59.054 33.333 0.00 0.00 0.00 3.69
231 232 8.966868 CAAATTGTAGGACTGTATTTTGGGTAT 58.033 33.333 0.00 0.00 0.00 2.73
232 233 9.541884 AAATTGTAGGACTGTATTTTGGGTATT 57.458 29.630 0.00 0.00 0.00 1.89
233 234 9.541884 AATTGTAGGACTGTATTTTGGGTATTT 57.458 29.630 0.00 0.00 0.00 1.40
234 235 7.931578 TGTAGGACTGTATTTTGGGTATTTG 57.068 36.000 0.00 0.00 0.00 2.32
235 236 7.463431 TGTAGGACTGTATTTTGGGTATTTGT 58.537 34.615 0.00 0.00 0.00 2.83
236 237 8.604184 TGTAGGACTGTATTTTGGGTATTTGTA 58.396 33.333 0.00 0.00 0.00 2.41
237 238 9.452287 GTAGGACTGTATTTTGGGTATTTGTAA 57.548 33.333 0.00 0.00 0.00 2.41
238 239 8.575649 AGGACTGTATTTTGGGTATTTGTAAG 57.424 34.615 0.00 0.00 0.00 2.34
239 240 8.168058 AGGACTGTATTTTGGGTATTTGTAAGT 58.832 33.333 0.00 0.00 0.00 2.24
240 241 9.452287 GGACTGTATTTTGGGTATTTGTAAGTA 57.548 33.333 0.00 0.00 0.00 2.24
242 243 8.938906 ACTGTATTTTGGGTATTTGTAAGTACG 58.061 33.333 0.00 0.00 0.00 3.67
243 244 9.153721 CTGTATTTTGGGTATTTGTAAGTACGA 57.846 33.333 0.00 0.00 0.00 3.43
244 245 9.153721 TGTATTTTGGGTATTTGTAAGTACGAG 57.846 33.333 0.00 0.00 0.00 4.18
245 246 7.619964 ATTTTGGGTATTTGTAAGTACGAGG 57.380 36.000 0.00 0.00 0.00 4.63
246 247 5.999205 TTGGGTATTTGTAAGTACGAGGA 57.001 39.130 0.00 0.00 0.00 3.71
247 248 5.329035 TGGGTATTTGTAAGTACGAGGAC 57.671 43.478 0.00 0.00 0.00 3.85
248 249 4.771577 TGGGTATTTGTAAGTACGAGGACA 59.228 41.667 0.00 0.00 0.00 4.02
249 250 5.245751 TGGGTATTTGTAAGTACGAGGACAA 59.754 40.000 0.00 2.19 0.00 3.18
250 251 6.165577 GGGTATTTGTAAGTACGAGGACAAA 58.834 40.000 15.23 15.23 43.69 2.83
252 253 7.201582 GGGTATTTGTAAGTACGAGGACAAATG 60.202 40.741 24.75 0.00 46.60 2.32
253 254 5.600908 TTTGTAAGTACGAGGACAAATGC 57.399 39.130 11.24 0.00 36.99 3.56
254 255 3.247442 TGTAAGTACGAGGACAAATGCG 58.753 45.455 0.00 0.00 0.00 4.73
255 256 1.722011 AAGTACGAGGACAAATGCGG 58.278 50.000 0.00 0.00 0.00 5.69
256 257 0.739813 AGTACGAGGACAAATGCGGC 60.740 55.000 0.00 0.00 0.00 6.53
257 258 1.448893 TACGAGGACAAATGCGGCC 60.449 57.895 0.00 0.00 0.00 6.13
258 259 3.864686 CGAGGACAAATGCGGCCG 61.865 66.667 24.05 24.05 0.00 6.13
259 260 2.435938 GAGGACAAATGCGGCCGA 60.436 61.111 33.48 15.19 0.00 5.54
260 261 2.746277 AGGACAAATGCGGCCGAC 60.746 61.111 33.48 21.14 0.00 4.79
271 272 4.247612 GGCCGACGCGACGAGTAT 62.248 66.667 30.91 0.00 35.02 2.12
272 273 3.017314 GCCGACGCGACGAGTATG 61.017 66.667 30.91 15.27 35.09 2.39
273 274 2.705220 CCGACGCGACGAGTATGA 59.295 61.111 30.91 0.00 35.09 2.15
274 275 1.367782 CCGACGCGACGAGTATGAG 60.368 63.158 30.91 9.50 35.09 2.90
275 276 1.367782 CGACGCGACGAGTATGAGG 60.368 63.158 25.89 0.00 35.09 3.86
276 277 1.759293 CGACGCGACGAGTATGAGGA 61.759 60.000 25.89 0.00 35.09 3.71
277 278 0.316032 GACGCGACGAGTATGAGGAC 60.316 60.000 15.93 0.00 0.00 3.85
278 279 1.022982 ACGCGACGAGTATGAGGACA 61.023 55.000 15.93 0.00 0.00 4.02
279 280 0.308068 CGCGACGAGTATGAGGACAT 59.692 55.000 0.00 0.00 40.16 3.06
280 281 1.759994 GCGACGAGTATGAGGACATG 58.240 55.000 0.00 0.00 37.87 3.21
281 282 1.065701 GCGACGAGTATGAGGACATGT 59.934 52.381 0.00 0.00 37.87 3.21
282 283 2.289820 GCGACGAGTATGAGGACATGTA 59.710 50.000 0.00 0.00 37.87 2.29
283 284 3.607310 GCGACGAGTATGAGGACATGTAG 60.607 52.174 0.00 0.00 37.87 2.74
284 285 3.560481 CGACGAGTATGAGGACATGTAGT 59.440 47.826 0.00 0.00 37.87 2.73
285 286 4.552961 CGACGAGTATGAGGACATGTAGTG 60.553 50.000 0.00 0.00 37.87 2.74
286 287 4.524053 ACGAGTATGAGGACATGTAGTGA 58.476 43.478 0.00 0.00 37.87 3.41
287 288 4.948004 ACGAGTATGAGGACATGTAGTGAA 59.052 41.667 0.00 0.00 37.87 3.18
288 289 5.594725 ACGAGTATGAGGACATGTAGTGAAT 59.405 40.000 0.00 0.00 37.87 2.57
289 290 6.096987 ACGAGTATGAGGACATGTAGTGAATT 59.903 38.462 0.00 0.00 37.87 2.17
290 291 6.980978 CGAGTATGAGGACATGTAGTGAATTT 59.019 38.462 0.00 0.00 37.87 1.82
291 292 7.492669 CGAGTATGAGGACATGTAGTGAATTTT 59.507 37.037 0.00 0.00 37.87 1.82
292 293 9.167311 GAGTATGAGGACATGTAGTGAATTTTT 57.833 33.333 0.00 0.00 37.87 1.94
293 294 9.167311 AGTATGAGGACATGTAGTGAATTTTTC 57.833 33.333 0.00 0.00 37.87 2.29
294 295 9.167311 GTATGAGGACATGTAGTGAATTTTTCT 57.833 33.333 0.00 0.00 37.87 2.52
295 296 7.672983 TGAGGACATGTAGTGAATTTTTCTC 57.327 36.000 0.00 0.00 0.00 2.87
309 310 7.167635 GTGAATTTTTCTCTTTCCTTTTCGACC 59.832 37.037 0.00 0.00 0.00 4.79
318 319 0.965439 CCTTTTCGACCCATTTGGCA 59.035 50.000 0.00 0.00 37.83 4.92
326 327 0.753479 ACCCATTTGGCACGTGAACA 60.753 50.000 22.23 14.66 37.83 3.18
330 331 0.602562 ATTTGGCACGTGAACATGGG 59.397 50.000 22.23 0.00 0.00 4.00
343 344 5.598769 GTGAACATGGGTACATAGGAGTAC 58.401 45.833 0.00 0.00 42.78 2.73
401 402 4.451150 CGGCCAAGCGCAGAGGTA 62.451 66.667 11.47 0.00 40.31 3.08
433 436 3.572584 GCGACGGGATCTAAATTACGAT 58.427 45.455 0.00 0.00 0.00 3.73
455 458 4.336889 AGAAAGAATCGTGTCCACTTGA 57.663 40.909 0.00 0.00 0.00 3.02
458 461 4.866508 AAGAATCGTGTCCACTTGAGTA 57.133 40.909 0.00 0.00 0.00 2.59
459 462 4.866508 AGAATCGTGTCCACTTGAGTAA 57.133 40.909 0.00 0.00 0.00 2.24
460 463 4.810790 AGAATCGTGTCCACTTGAGTAAG 58.189 43.478 0.00 0.00 39.86 2.34
461 464 4.523173 AGAATCGTGTCCACTTGAGTAAGA 59.477 41.667 0.00 0.00 37.36 2.10
466 477 5.522460 TCGTGTCCACTTGAGTAAGAAAAAG 59.478 40.000 0.00 0.00 37.36 2.27
483 501 5.516339 AGAAAAAGAAATTTCACGTGCACAG 59.484 36.000 19.99 12.16 40.89 3.66
566 584 2.887568 GACGTGGCCTCATCGCAG 60.888 66.667 3.32 0.00 0.00 5.18
579 597 3.805307 CGCAGCCGTCGAGAGAGT 61.805 66.667 0.00 0.00 43.49 3.24
593 611 0.941542 GAGAGTCAGGATCGGACGAG 59.058 60.000 9.64 0.00 40.20 4.18
595 613 1.377366 GAGTCAGGATCGGACGAGCA 61.377 60.000 12.18 0.00 40.20 4.26
621 639 2.510238 CCCGCTTCGCAGAGGAAG 60.510 66.667 6.39 0.00 42.60 3.46
661 679 2.561037 GCCACAACAAACTCCCCGG 61.561 63.158 0.00 0.00 0.00 5.73
662 680 1.901464 CCACAACAAACTCCCCGGG 60.901 63.158 15.80 15.80 0.00 5.73
663 681 1.149627 CACAACAAACTCCCCGGGA 59.850 57.895 26.32 5.87 0.00 5.14
664 682 0.251165 CACAACAAACTCCCCGGGAT 60.251 55.000 26.32 3.49 0.00 3.85
665 683 0.251165 ACAACAAACTCCCCGGGATG 60.251 55.000 26.32 16.93 0.00 3.51
740 758 7.096230 CCAACGATATTCCAGTTGTTGTTTTTC 60.096 37.037 6.77 0.00 42.45 2.29
748 774 4.261614 CCAGTTGTTGTTTTTCTCTAGGCC 60.262 45.833 0.00 0.00 0.00 5.19
939 974 4.235372 TCTTTCTCTCCACCTTCTCCTTT 58.765 43.478 0.00 0.00 0.00 3.11
974 1013 1.125093 TTGGTGAAGGGAAGCTCCGA 61.125 55.000 0.00 0.00 37.43 4.55
1051 1093 1.065854 CGCCCAAGGTCAAATCTCTCT 60.066 52.381 0.00 0.00 0.00 3.10
1053 1095 2.238395 GCCCAAGGTCAAATCTCTCTCT 59.762 50.000 0.00 0.00 0.00 3.10
1059 1101 5.456921 AGGTCAAATCTCTCTCTCTCTCT 57.543 43.478 0.00 0.00 0.00 3.10
1095 1141 2.736236 CTCTGCGCTGCGTCTGTT 60.736 61.111 24.04 0.00 0.00 3.16
1129 1175 7.295201 TCTGTTTTAGTTCGCAATGTTATGTC 58.705 34.615 0.00 0.00 0.00 3.06
1157 1203 2.739913 TCCACGAACGAAACAATCCATC 59.260 45.455 0.14 0.00 0.00 3.51
1199 1245 7.054124 TGTTTCTTGTATCTGGTTTCTTGAGT 58.946 34.615 0.00 0.00 0.00 3.41
1219 1265 3.023832 GTGGGAGAGAGAAAGAGAGAGG 58.976 54.545 0.00 0.00 0.00 3.69
1222 1268 3.563479 GGGAGAGAGAAAGAGAGAGGTGT 60.563 52.174 0.00 0.00 0.00 4.16
1223 1269 3.443681 GGAGAGAGAAAGAGAGAGGTGTG 59.556 52.174 0.00 0.00 0.00 3.82
1225 1271 4.735369 AGAGAGAAAGAGAGAGGTGTGAA 58.265 43.478 0.00 0.00 0.00 3.18
1227 1273 5.243730 AGAGAGAAAGAGAGAGGTGTGAAAG 59.756 44.000 0.00 0.00 0.00 2.62
1228 1274 5.144100 AGAGAAAGAGAGAGGTGTGAAAGA 58.856 41.667 0.00 0.00 0.00 2.52
1229 1275 5.243730 AGAGAAAGAGAGAGGTGTGAAAGAG 59.756 44.000 0.00 0.00 0.00 2.85
1230 1276 3.676291 AAGAGAGAGGTGTGAAAGAGC 57.324 47.619 0.00 0.00 0.00 4.09
1231 1277 1.543802 AGAGAGAGGTGTGAAAGAGCG 59.456 52.381 0.00 0.00 30.22 5.03
1232 1278 0.037790 AGAGAGGTGTGAAAGAGCGC 60.038 55.000 0.00 0.00 30.22 5.92
1233 1279 0.319900 GAGAGGTGTGAAAGAGCGCA 60.320 55.000 11.47 0.00 30.22 6.09
1234 1280 0.106708 AGAGGTGTGAAAGAGCGCAA 59.893 50.000 11.47 0.00 30.22 4.85
1235 1281 0.944386 GAGGTGTGAAAGAGCGCAAA 59.056 50.000 11.47 0.00 30.22 3.68
1236 1282 1.333619 GAGGTGTGAAAGAGCGCAAAA 59.666 47.619 11.47 0.00 30.22 2.44
1237 1283 1.065551 AGGTGTGAAAGAGCGCAAAAC 59.934 47.619 11.47 0.00 30.22 2.43
1245 1291 2.959507 AGAGCGCAAAACAAAAGGTT 57.040 40.000 11.47 0.00 42.98 3.50
1253 1299 3.691575 CAAAACAAAAGGTTGGGGGTTT 58.308 40.909 0.00 0.00 40.35 3.27
1255 1301 3.637911 AACAAAAGGTTGGGGGTTTTC 57.362 42.857 0.00 0.00 38.60 2.29
1525 1602 5.903810 AGAAGAGAAAAGAACGTGTGTACT 58.096 37.500 0.00 0.00 0.00 2.73
1537 1614 5.640189 ACGTGTGTACTTAAGTATCAGCT 57.360 39.130 18.03 6.50 32.54 4.24
1555 1632 3.739810 CAGCTTCATATGATCGGTGTGAG 59.260 47.826 18.95 8.70 0.00 3.51
1587 1664 4.329462 TTGCCTTAACTGCGGAATTTTT 57.671 36.364 0.00 0.00 0.00 1.94
1588 1665 5.455056 TTGCCTTAACTGCGGAATTTTTA 57.545 34.783 0.00 0.00 0.00 1.52
1590 1667 4.171005 GCCTTAACTGCGGAATTTTTACC 58.829 43.478 0.00 0.00 0.00 2.85
1621 1698 9.456147 TCCTTTAAATTAATCATCCAGTCGAAA 57.544 29.630 0.00 0.00 0.00 3.46
1639 1716 4.268687 CAGTGTTCCCTCGCTGTC 57.731 61.111 0.00 0.00 39.97 3.51
1658 1735 6.377327 CTGTCTTTCCAGCTGTTCTTTTAA 57.623 37.500 13.81 0.00 0.00 1.52
1663 1740 9.181805 GTCTTTCCAGCTGTTCTTTTAATTTAC 57.818 33.333 13.81 0.00 0.00 2.01
1688 1765 9.028284 ACAATTATCATCATCCAGTCTGTTTTT 57.972 29.630 0.00 0.00 0.00 1.94
1800 1884 6.359804 AGTACGTAGGAGTATGTTCCACATA 58.640 40.000 0.00 0.00 39.88 2.29
1803 1887 6.746120 ACGTAGGAGTATGTTCCACATATTC 58.254 40.000 9.73 9.73 42.39 1.75
1806 1890 7.926555 CGTAGGAGTATGTTCCACATATTCTTT 59.073 37.037 15.17 9.21 43.28 2.52
1807 1891 9.614792 GTAGGAGTATGTTCCACATATTCTTTT 57.385 33.333 15.17 7.54 43.28 2.27
1808 1892 8.738645 AGGAGTATGTTCCACATATTCTTTTC 57.261 34.615 15.17 3.69 43.28 2.29
1810 1894 8.616076 GGAGTATGTTCCACATATTCTTTTCAG 58.384 37.037 15.17 0.00 43.28 3.02
1865 1949 1.002468 TCTTTTTGCTGCTTCTGTCGC 60.002 47.619 0.00 0.00 0.00 5.19
1968 2052 2.421424 GCCAGAAATAGCTCACACTTGG 59.579 50.000 0.00 0.00 0.00 3.61
1972 2056 5.121811 CAGAAATAGCTCACACTTGGCTAT 58.878 41.667 0.00 0.00 46.93 2.97
1976 2063 3.533606 AGCTCACACTTGGCTATACAG 57.466 47.619 0.00 0.00 34.31 2.74
1977 2064 3.099905 AGCTCACACTTGGCTATACAGA 58.900 45.455 0.00 0.00 34.31 3.41
2024 2112 9.642343 AACTCTCCATTAACTAGTTTCCTTTTT 57.358 29.630 14.49 0.00 0.00 1.94
2101 2189 4.439057 TCTCGGTGTTAATTGCTACCATC 58.561 43.478 0.00 0.00 32.75 3.51
2144 2233 4.067896 AGAATGCAAAATGTCACGTCTCT 58.932 39.130 0.00 0.00 0.00 3.10
2264 2358 4.122776 CCGATGGTGGATTTTCACTAGAG 58.877 47.826 0.00 0.00 37.75 2.43
2287 2381 9.412460 AGAGATTGTGAAAATGGATGCTTTATA 57.588 29.630 0.00 0.00 0.00 0.98
2311 2405 7.703058 AAAATGAACTTCCGTATTCCAGATT 57.297 32.000 0.00 0.00 0.00 2.40
2321 2415 5.883115 TCCGTATTCCAGATTTGCAAACATA 59.117 36.000 15.41 2.01 0.00 2.29
2322 2416 5.971202 CCGTATTCCAGATTTGCAAACATAC 59.029 40.000 15.41 12.10 0.00 2.39
2324 2418 6.688385 CGTATTCCAGATTTGCAAACATACTG 59.312 38.462 15.41 18.84 0.00 2.74
2450 2544 5.065090 TCTGATGATGTATTTGTCTTTGGCG 59.935 40.000 0.00 0.00 0.00 5.69
2453 2547 3.126858 TGATGTATTTGTCTTTGGCGAGC 59.873 43.478 0.00 0.00 0.00 5.03
2489 2583 0.814010 GTGACAAGTCAACTGCCCGT 60.814 55.000 4.20 0.00 41.85 5.28
2490 2584 0.107410 TGACAAGTCAACTGCCCGTT 60.107 50.000 0.00 0.00 36.53 4.44
2507 2601 4.575885 CCCGTTAGAAAAGGAATCACTCA 58.424 43.478 0.00 0.00 0.00 3.41
2553 2647 7.279313 TGCCAATTATCCGTCTCTTAAGTTTAC 59.721 37.037 1.63 0.00 0.00 2.01
2592 2686 4.335416 TGAAAGAAATGCCAGGAGGTTAG 58.665 43.478 0.00 0.00 37.19 2.34
2984 3109 1.000739 AATGGCATGTGGGTCCCAG 59.999 57.895 12.21 0.10 32.34 4.45
3000 3126 1.633561 CCAGTGTCATACTCACAGCG 58.366 55.000 0.00 0.00 37.60 5.18
3037 3163 3.922240 GCTACAAACTTGCAATGACATGG 59.078 43.478 0.00 0.00 0.00 3.66
3050 3176 7.384477 TGCAATGACATGGTTCAAATCATTTA 58.616 30.769 0.00 0.00 37.80 1.40
3133 3266 1.135199 GGATCATCACGGTGTACACGT 60.135 52.381 19.41 16.84 46.82 4.49
3261 3394 2.546494 GCCACAGCAGCTTGTCGTT 61.546 57.895 0.00 0.00 39.53 3.85
3411 3544 0.543174 ACTTCGTCCTCTCCCAGCTT 60.543 55.000 0.00 0.00 0.00 3.74
3530 3663 3.734463 TCACTGTAGCAAATCCGACAAA 58.266 40.909 0.00 0.00 0.00 2.83
3536 3727 6.016276 ACTGTAGCAAATCCGACAAATTTCTT 60.016 34.615 0.00 0.00 0.00 2.52
3537 3728 6.744112 TGTAGCAAATCCGACAAATTTCTTT 58.256 32.000 0.00 0.00 0.00 2.52
3635 3847 1.832167 GTTGCACAAGGGGAAGGCA 60.832 57.895 0.00 0.00 0.00 4.75
3671 3883 4.498520 CTGCGGGCATCGACGACT 62.499 66.667 0.00 0.00 42.43 4.18
3677 3889 2.711922 GGCATCGACGACTCCAGGT 61.712 63.158 0.00 0.00 0.00 4.00
3689 3901 1.152419 TCCAGGTCAGGTGTTCGGA 60.152 57.895 0.00 0.00 0.00 4.55
3818 4030 3.494254 TGGAAGGGCGTGGTGGTT 61.494 61.111 0.00 0.00 0.00 3.67
3881 4093 2.033602 GGCTACTGGGCGTTTGGT 59.966 61.111 0.00 0.00 0.00 3.67
4059 4454 8.425491 CGATATATCTGACGGTACAACAAAATC 58.575 37.037 10.93 0.00 0.00 2.17
4115 4510 2.561733 TCGACATGATGGAGACGTTC 57.438 50.000 0.00 0.00 0.00 3.95
4405 4828 8.763356 GTTTCATGACAGCAAATTTACATTCAA 58.237 29.630 0.00 0.00 0.00 2.69
4413 4836 7.170320 ACAGCAAATTTACATTCAAAGCTTCTG 59.830 33.333 0.00 0.61 0.00 3.02
4431 4854 5.688807 CTTCTGGTGAGATTGGACCATAAT 58.311 41.667 0.00 0.00 41.47 1.28
4432 4855 5.039920 TCTGGTGAGATTGGACCATAATG 57.960 43.478 0.00 0.00 41.47 1.90
4433 4856 4.474651 TCTGGTGAGATTGGACCATAATGT 59.525 41.667 0.00 0.00 41.47 2.71
4437 4860 6.069673 TGGTGAGATTGGACCATAATGTAACT 60.070 38.462 0.00 0.00 37.32 2.24
4438 4861 6.260936 GGTGAGATTGGACCATAATGTAACTG 59.739 42.308 0.00 0.00 31.97 3.16
4557 4980 5.468540 ACCCAAAGATCCAAAGCTTTTAC 57.531 39.130 9.53 1.49 39.02 2.01
4574 4997 5.535030 GCTTTTACCCCTCTCTTTTCTTCAA 59.465 40.000 0.00 0.00 0.00 2.69
4669 5092 2.444706 CCCATCGGAGGGCTCAGA 60.445 66.667 2.47 0.00 43.10 3.27
4723 5146 8.228035 AGTTCTACTCATAGATCACTACAACC 57.772 38.462 0.00 0.00 37.28 3.77
4833 5257 3.121030 ACGGCTTGTCGCAGATGC 61.121 61.111 0.00 0.00 40.67 3.91
4978 5402 5.180117 CACTAGCTATGAAAATAGGCGCAAT 59.820 40.000 10.83 0.00 0.00 3.56
5037 5461 7.037438 GTGCAAGATCCATACATTTGATTGTT 58.963 34.615 0.00 0.00 0.00 2.83
5038 5462 7.221452 GTGCAAGATCCATACATTTGATTGTTC 59.779 37.037 0.00 0.00 0.00 3.18
5040 5464 7.977853 GCAAGATCCATACATTTGATTGTTCTT 59.022 33.333 0.00 0.00 0.00 2.52
5041 5465 9.512435 CAAGATCCATACATTTGATTGTTCTTC 57.488 33.333 0.00 0.00 0.00 2.87
5085 5512 8.335532 TCTGTGTTCTTTTTCTTTCTTTGAGA 57.664 30.769 0.00 0.00 0.00 3.27
5086 5513 8.960591 TCTGTGTTCTTTTTCTTTCTTTGAGAT 58.039 29.630 0.00 0.00 0.00 2.75
5099 5526 6.732531 TTCTTTGAGATAATGTCTGTGCTG 57.267 37.500 0.00 0.00 37.29 4.41
5108 5535 1.302366 TGTCTGTGCTGTTCTTGCTG 58.698 50.000 0.00 0.00 0.00 4.41
5168 5597 2.592102 TCTCCTTGATGCTGCCTTTT 57.408 45.000 0.00 0.00 0.00 2.27
5236 5666 5.190677 CGGTCCCAGTTAATCAACCTAAAT 58.809 41.667 0.00 0.00 35.05 1.40
5323 5771 1.338337 AGATCACTGACGCCTATTCCG 59.662 52.381 0.00 0.00 0.00 4.30
5337 5785 6.074544 GCCTATTCCGAGCGATATAATAGT 57.925 41.667 7.79 0.00 31.25 2.12
5348 5796 6.496571 AGCGATATAATAGTATCAGCGAACC 58.503 40.000 0.00 0.00 36.57 3.62
5381 5894 6.413018 AGAAGAAAAAGTTTTGCAGCAAAG 57.587 33.333 19.74 0.00 34.72 2.77
5422 5935 4.381612 GCCTCTTACCAACTAAATTTGCCC 60.382 45.833 0.00 0.00 0.00 5.36
5544 6063 5.195940 TCAGCAGCCAATTAAAGCTTATCT 58.804 37.500 0.00 0.00 37.18 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.974438 TTCGTCCCCCTGCCTGGT 62.974 66.667 0.00 0.00 0.00 4.00
17 18 4.410400 GTTCGTCCCCCTGCCTGG 62.410 72.222 0.00 0.00 0.00 4.45
18 19 4.760047 CGTTCGTCCCCCTGCCTG 62.760 72.222 0.00 0.00 0.00 4.85
19 20 3.892104 TACGTTCGTCCCCCTGCCT 62.892 63.158 0.00 0.00 0.00 4.75
20 21 2.453379 TTTACGTTCGTCCCCCTGCC 62.453 60.000 0.00 0.00 0.00 4.85
21 22 0.392060 ATTTACGTTCGTCCCCCTGC 60.392 55.000 0.00 0.00 0.00 4.85
22 23 2.004733 GAATTTACGTTCGTCCCCCTG 58.995 52.381 0.00 0.00 0.00 4.45
23 24 1.404583 CGAATTTACGTTCGTCCCCCT 60.405 52.381 0.00 0.00 44.32 4.79
24 25 1.001624 CGAATTTACGTTCGTCCCCC 58.998 55.000 0.00 0.00 44.32 5.40
31 32 4.841841 TGCAAAATCGTCGAATTTACGTTC 59.158 37.500 7.91 0.00 41.08 3.95
32 33 4.774586 TGCAAAATCGTCGAATTTACGTT 58.225 34.783 7.91 3.88 41.08 3.99
33 34 4.392619 TGCAAAATCGTCGAATTTACGT 57.607 36.364 7.91 0.00 41.08 3.57
34 35 5.717000 TTTGCAAAATCGTCGAATTTACG 57.283 34.783 10.02 7.70 41.64 3.18
59 60 2.279810 CCGGGGAATGCGGGTTTTT 61.280 57.895 0.00 0.00 0.00 1.94
60 61 2.678580 CCGGGGAATGCGGGTTTT 60.679 61.111 0.00 0.00 0.00 2.43
61 62 2.508407 ATTCCGGGGAATGCGGGTTT 62.508 55.000 12.03 0.00 42.55 3.27
62 63 2.904178 GATTCCGGGGAATGCGGGTT 62.904 60.000 17.29 0.00 43.98 4.11
63 64 3.415650 GATTCCGGGGAATGCGGGT 62.416 63.158 17.29 0.00 43.98 5.28
64 65 2.594592 GATTCCGGGGAATGCGGG 60.595 66.667 17.29 0.00 43.98 6.13
65 66 2.731691 ATCGATTCCGGGGAATGCGG 62.732 60.000 17.29 6.97 43.98 5.69
66 67 1.291877 GATCGATTCCGGGGAATGCG 61.292 60.000 17.29 17.80 43.98 4.73
67 68 1.291877 CGATCGATTCCGGGGAATGC 61.292 60.000 17.29 8.33 43.98 3.56
68 69 0.670546 CCGATCGATTCCGGGGAATG 60.671 60.000 18.66 9.83 43.98 2.67
69 70 0.830444 TCCGATCGATTCCGGGGAAT 60.830 55.000 21.39 12.62 46.29 3.01
70 71 1.456145 TCCGATCGATTCCGGGGAA 60.456 57.895 21.39 2.05 45.36 3.97
71 72 2.196502 TCCGATCGATTCCGGGGA 59.803 61.111 21.39 11.04 45.36 4.81
72 73 2.338984 GTCCGATCGATTCCGGGG 59.661 66.667 21.39 9.17 45.36 5.73
73 74 2.338984 GGTCCGATCGATTCCGGG 59.661 66.667 21.39 11.31 45.36 5.73
74 75 1.007271 CTGGTCCGATCGATTCCGG 60.007 63.158 18.66 17.13 46.57 5.14
75 76 1.007271 CCTGGTCCGATCGATTCCG 60.007 63.158 18.66 11.08 37.07 4.30
76 77 1.367840 CCCTGGTCCGATCGATTCC 59.632 63.158 18.66 15.39 0.00 3.01
77 78 1.301009 GCCCTGGTCCGATCGATTC 60.301 63.158 18.66 6.15 0.00 2.52
78 79 2.822399 GCCCTGGTCCGATCGATT 59.178 61.111 18.66 0.00 0.00 3.34
79 80 3.606662 CGCCCTGGTCCGATCGAT 61.607 66.667 18.66 0.00 0.00 3.59
81 82 4.570663 GACGCCCTGGTCCGATCG 62.571 72.222 8.51 8.51 0.00 3.69
82 83 3.148279 AGACGCCCTGGTCCGATC 61.148 66.667 10.40 5.23 37.66 3.69
83 84 3.461773 CAGACGCCCTGGTCCGAT 61.462 66.667 10.40 0.00 39.23 4.18
90 91 3.596066 CTCACCACCAGACGCCCTG 62.596 68.421 0.00 0.00 42.55 4.45
91 92 3.314331 CTCACCACCAGACGCCCT 61.314 66.667 0.00 0.00 0.00 5.19
93 94 4.008933 AGCTCACCACCAGACGCC 62.009 66.667 0.00 0.00 0.00 5.68
94 95 2.740055 CAGCTCACCACCAGACGC 60.740 66.667 0.00 0.00 0.00 5.19
95 96 2.047844 CCAGCTCACCACCAGACG 60.048 66.667 0.00 0.00 0.00 4.18
96 97 2.359230 GCCAGCTCACCACCAGAC 60.359 66.667 0.00 0.00 0.00 3.51
97 98 4.007644 CGCCAGCTCACCACCAGA 62.008 66.667 0.00 0.00 0.00 3.86
101 102 3.825160 TTGACCGCCAGCTCACCAC 62.825 63.158 0.00 0.00 0.00 4.16
102 103 3.113514 TTTGACCGCCAGCTCACCA 62.114 57.895 0.00 0.00 0.00 4.17
103 104 2.281484 TTTGACCGCCAGCTCACC 60.281 61.111 0.00 0.00 0.00 4.02
104 105 2.970974 GCTTTGACCGCCAGCTCAC 61.971 63.158 0.00 0.00 0.00 3.51
105 106 2.669569 GCTTTGACCGCCAGCTCA 60.670 61.111 0.00 0.00 0.00 4.26
106 107 3.435186 GGCTTTGACCGCCAGCTC 61.435 66.667 0.00 0.00 46.77 4.09
115 116 3.723348 GTCCACGCGGGCTTTGAC 61.723 66.667 12.47 5.23 36.21 3.18
125 126 4.961511 TGACTGGCACGTCCACGC 62.962 66.667 12.45 0.00 44.43 5.34
126 127 2.279851 TTGACTGGCACGTCCACG 60.280 61.111 12.45 0.00 40.72 4.94
127 128 2.251642 GGTTGACTGGCACGTCCAC 61.252 63.158 12.45 11.51 40.72 4.02
128 129 2.110213 GGTTGACTGGCACGTCCA 59.890 61.111 12.45 6.57 44.18 4.02
129 130 3.041940 CGGTTGACTGGCACGTCC 61.042 66.667 12.45 0.00 32.61 4.79
130 131 3.712881 GCGGTTGACTGGCACGTC 61.713 66.667 9.30 9.30 33.78 4.34
135 136 1.212751 GATTTGGCGGTTGACTGGC 59.787 57.895 9.37 9.37 46.78 4.85
136 137 0.523072 CTGATTTGGCGGTTGACTGG 59.477 55.000 0.00 0.00 0.00 4.00
137 138 0.109597 GCTGATTTGGCGGTTGACTG 60.110 55.000 0.00 0.00 0.00 3.51
138 139 0.537143 TGCTGATTTGGCGGTTGACT 60.537 50.000 0.00 0.00 0.00 3.41
139 140 0.387239 GTGCTGATTTGGCGGTTGAC 60.387 55.000 0.00 0.00 0.00 3.18
140 141 1.851021 CGTGCTGATTTGGCGGTTGA 61.851 55.000 0.00 0.00 0.00 3.18
141 142 1.442520 CGTGCTGATTTGGCGGTTG 60.443 57.895 0.00 0.00 0.00 3.77
142 143 0.604243 TACGTGCTGATTTGGCGGTT 60.604 50.000 0.00 0.00 0.00 4.44
143 144 1.004320 TACGTGCTGATTTGGCGGT 60.004 52.632 0.00 0.00 0.00 5.68
144 145 1.423845 GTACGTGCTGATTTGGCGG 59.576 57.895 0.00 0.00 0.00 6.13
145 146 1.058748 CGTACGTGCTGATTTGGCG 59.941 57.895 7.22 0.00 0.00 5.69
146 147 1.323534 CTACGTACGTGCTGATTTGGC 59.676 52.381 30.25 0.00 0.00 4.52
147 148 2.852413 CTCTACGTACGTGCTGATTTGG 59.148 50.000 30.25 9.95 0.00 3.28
148 149 2.852413 CCTCTACGTACGTGCTGATTTG 59.148 50.000 30.25 12.94 0.00 2.32
149 150 2.751259 TCCTCTACGTACGTGCTGATTT 59.249 45.455 30.25 3.43 0.00 2.17
150 151 2.362736 TCCTCTACGTACGTGCTGATT 58.637 47.619 30.25 4.23 0.00 2.57
151 152 2.034104 TCCTCTACGTACGTGCTGAT 57.966 50.000 30.25 5.02 0.00 2.90
152 153 1.812235 TTCCTCTACGTACGTGCTGA 58.188 50.000 30.25 21.75 0.00 4.26
153 154 2.624316 TTTCCTCTACGTACGTGCTG 57.376 50.000 30.25 19.00 0.00 4.41
154 155 2.666619 CGTTTTCCTCTACGTACGTGCT 60.667 50.000 30.25 6.64 33.33 4.40
155 156 1.645751 CGTTTTCCTCTACGTACGTGC 59.354 52.381 30.25 0.00 33.33 5.34
162 163 5.163923 GGTCCAAAATACGTTTTCCTCTACG 60.164 44.000 0.00 0.00 43.08 3.51
163 164 5.163923 CGGTCCAAAATACGTTTTCCTCTAC 60.164 44.000 0.00 0.00 35.41 2.59
164 165 4.931002 CGGTCCAAAATACGTTTTCCTCTA 59.069 41.667 0.00 0.00 35.41 2.43
165 166 3.749609 CGGTCCAAAATACGTTTTCCTCT 59.250 43.478 0.00 0.00 35.41 3.69
166 167 3.499537 ACGGTCCAAAATACGTTTTCCTC 59.500 43.478 0.00 0.00 35.41 3.71
167 168 3.479489 ACGGTCCAAAATACGTTTTCCT 58.521 40.909 0.00 0.00 35.41 3.36
168 169 3.902261 ACGGTCCAAAATACGTTTTCC 57.098 42.857 0.00 0.00 35.41 3.13
169 170 5.844301 TCTACGGTCCAAAATACGTTTTC 57.156 39.130 0.00 0.00 40.38 2.29
170 171 5.933463 TCATCTACGGTCCAAAATACGTTTT 59.067 36.000 0.00 0.00 40.38 2.43
171 172 5.349543 GTCATCTACGGTCCAAAATACGTTT 59.650 40.000 0.00 0.00 40.38 3.60
172 173 4.866486 GTCATCTACGGTCCAAAATACGTT 59.134 41.667 0.00 0.00 40.38 3.99
173 174 4.427312 GTCATCTACGGTCCAAAATACGT 58.573 43.478 0.00 0.00 42.71 3.57
174 175 3.800506 GGTCATCTACGGTCCAAAATACG 59.199 47.826 0.00 0.00 0.00 3.06
175 176 4.569564 GTGGTCATCTACGGTCCAAAATAC 59.430 45.833 0.00 0.00 0.00 1.89
176 177 4.383335 GGTGGTCATCTACGGTCCAAAATA 60.383 45.833 0.00 0.00 0.00 1.40
177 178 3.606687 GTGGTCATCTACGGTCCAAAAT 58.393 45.455 0.00 0.00 0.00 1.82
178 179 2.289819 GGTGGTCATCTACGGTCCAAAA 60.290 50.000 0.00 0.00 0.00 2.44
179 180 1.276989 GGTGGTCATCTACGGTCCAAA 59.723 52.381 0.00 0.00 0.00 3.28
180 181 0.899720 GGTGGTCATCTACGGTCCAA 59.100 55.000 0.00 0.00 0.00 3.53
181 182 0.040646 AGGTGGTCATCTACGGTCCA 59.959 55.000 0.00 0.00 0.00 4.02
182 183 0.460311 CAGGTGGTCATCTACGGTCC 59.540 60.000 0.00 0.00 0.00 4.46
183 184 0.460311 CCAGGTGGTCATCTACGGTC 59.540 60.000 0.00 0.00 0.00 4.79
184 185 0.976073 CCCAGGTGGTCATCTACGGT 60.976 60.000 0.00 0.00 0.00 4.83
185 186 0.686441 TCCCAGGTGGTCATCTACGG 60.686 60.000 0.00 0.00 34.77 4.02
186 187 0.460311 GTCCCAGGTGGTCATCTACG 59.540 60.000 0.00 0.00 34.77 3.51
187 188 1.568504 TGTCCCAGGTGGTCATCTAC 58.431 55.000 0.00 0.00 34.77 2.59
188 189 2.335681 TTGTCCCAGGTGGTCATCTA 57.664 50.000 0.00 0.00 31.98 1.98
189 190 1.444933 TTTGTCCCAGGTGGTCATCT 58.555 50.000 0.00 0.00 31.98 2.90
190 191 2.493278 CAATTTGTCCCAGGTGGTCATC 59.507 50.000 0.00 0.00 31.98 2.92
191 192 2.158325 ACAATTTGTCCCAGGTGGTCAT 60.158 45.455 0.00 0.00 31.98 3.06
192 193 1.216678 ACAATTTGTCCCAGGTGGTCA 59.783 47.619 0.00 0.00 34.77 4.02
193 194 1.995376 ACAATTTGTCCCAGGTGGTC 58.005 50.000 0.00 0.00 34.77 4.02
194 195 2.225017 CCTACAATTTGTCCCAGGTGGT 60.225 50.000 5.07 0.00 34.77 4.16
195 196 2.041081 TCCTACAATTTGTCCCAGGTGG 59.959 50.000 5.07 0.00 28.38 4.61
196 197 3.081804 GTCCTACAATTTGTCCCAGGTG 58.918 50.000 5.07 0.00 28.38 4.00
197 198 2.986728 AGTCCTACAATTTGTCCCAGGT 59.013 45.455 5.07 0.00 28.38 4.00
198 199 3.244911 ACAGTCCTACAATTTGTCCCAGG 60.245 47.826 5.07 7.83 0.00 4.45
199 200 4.021102 ACAGTCCTACAATTTGTCCCAG 57.979 45.455 5.07 0.00 0.00 4.45
200 201 5.772393 ATACAGTCCTACAATTTGTCCCA 57.228 39.130 5.07 0.00 0.00 4.37
201 202 7.312899 CAAAATACAGTCCTACAATTTGTCCC 58.687 38.462 5.07 0.00 0.00 4.46
202 203 7.312899 CCAAAATACAGTCCTACAATTTGTCC 58.687 38.462 5.07 0.00 0.00 4.02
203 204 7.039993 ACCCAAAATACAGTCCTACAATTTGTC 60.040 37.037 5.07 0.00 0.00 3.18
204 205 6.780522 ACCCAAAATACAGTCCTACAATTTGT 59.219 34.615 7.30 7.30 0.00 2.83
205 206 7.227049 ACCCAAAATACAGTCCTACAATTTG 57.773 36.000 0.00 0.00 0.00 2.32
206 207 9.541884 AATACCCAAAATACAGTCCTACAATTT 57.458 29.630 0.00 0.00 0.00 1.82
207 208 9.541884 AAATACCCAAAATACAGTCCTACAATT 57.458 29.630 0.00 0.00 0.00 2.32
208 209 8.966868 CAAATACCCAAAATACAGTCCTACAAT 58.033 33.333 0.00 0.00 0.00 2.71
209 210 7.945664 ACAAATACCCAAAATACAGTCCTACAA 59.054 33.333 0.00 0.00 0.00 2.41
210 211 7.463431 ACAAATACCCAAAATACAGTCCTACA 58.537 34.615 0.00 0.00 0.00 2.74
211 212 7.933215 ACAAATACCCAAAATACAGTCCTAC 57.067 36.000 0.00 0.00 0.00 3.18
212 213 9.675464 CTTACAAATACCCAAAATACAGTCCTA 57.325 33.333 0.00 0.00 0.00 2.94
213 214 8.168058 ACTTACAAATACCCAAAATACAGTCCT 58.832 33.333 0.00 0.00 0.00 3.85
214 215 8.344446 ACTTACAAATACCCAAAATACAGTCC 57.656 34.615 0.00 0.00 0.00 3.85
216 217 8.938906 CGTACTTACAAATACCCAAAATACAGT 58.061 33.333 0.00 0.00 0.00 3.55
217 218 9.153721 TCGTACTTACAAATACCCAAAATACAG 57.846 33.333 0.00 0.00 0.00 2.74
218 219 9.153721 CTCGTACTTACAAATACCCAAAATACA 57.846 33.333 0.00 0.00 0.00 2.29
219 220 8.606602 CCTCGTACTTACAAATACCCAAAATAC 58.393 37.037 0.00 0.00 0.00 1.89
220 221 8.538701 TCCTCGTACTTACAAATACCCAAAATA 58.461 33.333 0.00 0.00 0.00 1.40
221 222 7.335171 GTCCTCGTACTTACAAATACCCAAAAT 59.665 37.037 0.00 0.00 0.00 1.82
222 223 6.650390 GTCCTCGTACTTACAAATACCCAAAA 59.350 38.462 0.00 0.00 0.00 2.44
223 224 6.165577 GTCCTCGTACTTACAAATACCCAAA 58.834 40.000 0.00 0.00 0.00 3.28
224 225 5.245751 TGTCCTCGTACTTACAAATACCCAA 59.754 40.000 0.00 0.00 0.00 4.12
225 226 4.771577 TGTCCTCGTACTTACAAATACCCA 59.228 41.667 0.00 0.00 0.00 4.51
226 227 5.329035 TGTCCTCGTACTTACAAATACCC 57.671 43.478 0.00 0.00 0.00 3.69
227 228 7.675637 GCATTTGTCCTCGTACTTACAAATACC 60.676 40.741 17.06 11.39 45.80 2.73
228 229 7.178074 GCATTTGTCCTCGTACTTACAAATAC 58.822 38.462 17.06 11.89 45.80 1.89
229 230 6.035220 CGCATTTGTCCTCGTACTTACAAATA 59.965 38.462 17.06 1.47 45.80 1.40
231 232 4.150980 CGCATTTGTCCTCGTACTTACAAA 59.849 41.667 11.66 11.66 43.63 2.83
232 233 3.676172 CGCATTTGTCCTCGTACTTACAA 59.324 43.478 0.00 0.00 0.00 2.41
233 234 3.247442 CGCATTTGTCCTCGTACTTACA 58.753 45.455 0.00 0.00 0.00 2.41
234 235 2.601763 CCGCATTTGTCCTCGTACTTAC 59.398 50.000 0.00 0.00 0.00 2.34
235 236 2.883574 CCGCATTTGTCCTCGTACTTA 58.116 47.619 0.00 0.00 0.00 2.24
236 237 1.722011 CCGCATTTGTCCTCGTACTT 58.278 50.000 0.00 0.00 0.00 2.24
237 238 0.739813 GCCGCATTTGTCCTCGTACT 60.740 55.000 0.00 0.00 0.00 2.73
238 239 1.702491 GGCCGCATTTGTCCTCGTAC 61.702 60.000 0.00 0.00 0.00 3.67
239 240 1.448893 GGCCGCATTTGTCCTCGTA 60.449 57.895 0.00 0.00 0.00 3.43
240 241 2.746277 GGCCGCATTTGTCCTCGT 60.746 61.111 0.00 0.00 0.00 4.18
241 242 3.864686 CGGCCGCATTTGTCCTCG 61.865 66.667 14.67 0.00 0.00 4.63
242 243 2.435938 TCGGCCGCATTTGTCCTC 60.436 61.111 23.51 0.00 0.00 3.71
243 244 2.746277 GTCGGCCGCATTTGTCCT 60.746 61.111 23.51 0.00 0.00 3.85
244 245 4.160635 CGTCGGCCGCATTTGTCC 62.161 66.667 23.51 0.00 0.00 4.02
254 255 4.247612 ATACTCGTCGCGTCGGCC 62.248 66.667 24.30 0.00 35.02 6.13
255 256 3.017314 CATACTCGTCGCGTCGGC 61.017 66.667 24.30 4.47 0.00 5.54
256 257 1.367782 CTCATACTCGTCGCGTCGG 60.368 63.158 24.30 17.08 0.00 4.79
257 258 1.367782 CCTCATACTCGTCGCGTCG 60.368 63.158 19.46 19.46 0.00 5.12
258 259 0.316032 GTCCTCATACTCGTCGCGTC 60.316 60.000 5.77 0.00 0.00 5.19
259 260 1.022982 TGTCCTCATACTCGTCGCGT 61.023 55.000 5.77 0.00 0.00 6.01
260 261 0.308068 ATGTCCTCATACTCGTCGCG 59.692 55.000 0.00 0.00 31.89 5.87
261 262 1.065701 ACATGTCCTCATACTCGTCGC 59.934 52.381 0.00 0.00 32.47 5.19
262 263 3.560481 ACTACATGTCCTCATACTCGTCG 59.440 47.826 0.00 0.00 32.47 5.12
263 264 4.575236 TCACTACATGTCCTCATACTCGTC 59.425 45.833 0.00 0.00 32.47 4.20
264 265 4.524053 TCACTACATGTCCTCATACTCGT 58.476 43.478 0.00 0.00 32.47 4.18
265 266 5.500645 TTCACTACATGTCCTCATACTCG 57.499 43.478 0.00 0.00 32.47 4.18
266 267 8.723942 AAAATTCACTACATGTCCTCATACTC 57.276 34.615 0.00 0.00 32.47 2.59
267 268 9.167311 GAAAAATTCACTACATGTCCTCATACT 57.833 33.333 0.00 0.00 32.47 2.12
268 269 9.167311 AGAAAAATTCACTACATGTCCTCATAC 57.833 33.333 0.00 0.00 32.47 2.39
269 270 9.383519 GAGAAAAATTCACTACATGTCCTCATA 57.616 33.333 0.00 0.00 32.47 2.15
270 271 8.105829 AGAGAAAAATTCACTACATGTCCTCAT 58.894 33.333 0.00 0.00 34.21 2.90
271 272 7.453393 AGAGAAAAATTCACTACATGTCCTCA 58.547 34.615 0.00 0.00 0.00 3.86
272 273 7.913674 AGAGAAAAATTCACTACATGTCCTC 57.086 36.000 0.00 0.00 0.00 3.71
273 274 8.697507 AAAGAGAAAAATTCACTACATGTCCT 57.302 30.769 0.00 0.00 30.22 3.85
274 275 8.023706 GGAAAGAGAAAAATTCACTACATGTCC 58.976 37.037 0.00 0.00 30.22 4.02
275 276 8.787852 AGGAAAGAGAAAAATTCACTACATGTC 58.212 33.333 0.00 0.00 30.22 3.06
276 277 8.697507 AGGAAAGAGAAAAATTCACTACATGT 57.302 30.769 2.69 2.69 30.22 3.21
277 278 9.971922 AAAGGAAAGAGAAAAATTCACTACATG 57.028 29.630 0.00 0.00 30.22 3.21
280 281 9.170584 CGAAAAGGAAAGAGAAAAATTCACTAC 57.829 33.333 0.00 0.00 30.22 2.73
281 282 9.116067 TCGAAAAGGAAAGAGAAAAATTCACTA 57.884 29.630 0.00 0.00 30.22 2.74
282 283 7.915923 GTCGAAAAGGAAAGAGAAAAATTCACT 59.084 33.333 0.00 0.00 31.73 3.41
283 284 7.167635 GGTCGAAAAGGAAAGAGAAAAATTCAC 59.832 37.037 0.00 0.00 0.00 3.18
284 285 7.200455 GGTCGAAAAGGAAAGAGAAAAATTCA 58.800 34.615 0.00 0.00 0.00 2.57
285 286 6.641314 GGGTCGAAAAGGAAAGAGAAAAATTC 59.359 38.462 0.00 0.00 0.00 2.17
286 287 6.097696 TGGGTCGAAAAGGAAAGAGAAAAATT 59.902 34.615 0.00 0.00 0.00 1.82
287 288 5.596772 TGGGTCGAAAAGGAAAGAGAAAAAT 59.403 36.000 0.00 0.00 0.00 1.82
288 289 4.951094 TGGGTCGAAAAGGAAAGAGAAAAA 59.049 37.500 0.00 0.00 0.00 1.94
289 290 4.528920 TGGGTCGAAAAGGAAAGAGAAAA 58.471 39.130 0.00 0.00 0.00 2.29
290 291 4.159244 TGGGTCGAAAAGGAAAGAGAAA 57.841 40.909 0.00 0.00 0.00 2.52
291 292 3.849563 TGGGTCGAAAAGGAAAGAGAA 57.150 42.857 0.00 0.00 0.00 2.87
292 293 4.367039 AATGGGTCGAAAAGGAAAGAGA 57.633 40.909 0.00 0.00 0.00 3.10
293 294 4.321230 CCAAATGGGTCGAAAAGGAAAGAG 60.321 45.833 0.00 0.00 0.00 2.85
294 295 3.572255 CCAAATGGGTCGAAAAGGAAAGA 59.428 43.478 0.00 0.00 0.00 2.52
295 296 3.860754 GCCAAATGGGTCGAAAAGGAAAG 60.861 47.826 0.90 0.00 39.65 2.62
309 310 1.669502 CCATGTTCACGTGCCAAATGG 60.670 52.381 17.65 17.65 38.53 3.16
318 319 3.101437 TCCTATGTACCCATGTTCACGT 58.899 45.455 0.00 0.00 32.29 4.49
326 327 9.793259 CAAATTTATGTACTCCTATGTACCCAT 57.207 33.333 0.00 0.00 41.34 4.00
330 331 8.671384 TGCCAAATTTATGTACTCCTATGTAC 57.329 34.615 0.00 0.00 42.10 2.90
343 344 5.240121 AGTTGAAGGCTTGCCAAATTTATG 58.760 37.500 14.54 0.00 0.00 1.90
401 402 3.183323 CCGTCGCGGCGTAAATGT 61.183 61.111 32.48 0.00 41.17 2.71
433 436 5.010719 ACTCAAGTGGACACGATTCTTTCTA 59.989 40.000 0.00 0.00 36.20 2.10
455 458 7.220108 GTGCACGTGAAATTTCTTTTTCTTACT 59.780 33.333 22.23 0.00 36.71 2.24
458 461 5.866633 TGTGCACGTGAAATTTCTTTTTCTT 59.133 32.000 22.23 0.00 36.71 2.52
459 462 5.406649 TGTGCACGTGAAATTTCTTTTTCT 58.593 33.333 22.23 0.00 36.71 2.52
460 463 5.276348 CCTGTGCACGTGAAATTTCTTTTTC 60.276 40.000 22.23 6.57 36.38 2.29
461 464 4.566360 CCTGTGCACGTGAAATTTCTTTTT 59.434 37.500 22.23 0.00 0.00 1.94
466 477 1.001378 AGCCTGTGCACGTGAAATTTC 60.001 47.619 22.23 11.41 41.13 2.17
483 501 6.183360 GGACTATTCAATTCTCTTTCCAAGCC 60.183 42.308 0.00 0.00 0.00 4.35
566 584 1.098712 ATCCTGACTCTCTCGACGGC 61.099 60.000 0.00 0.00 0.00 5.68
579 597 2.775856 GCTGCTCGTCCGATCCTGA 61.776 63.158 0.00 0.00 0.00 3.86
621 639 3.400590 GCGTCCGTGTGTCGTTCC 61.401 66.667 0.00 0.00 37.94 3.62
661 679 2.359850 TGTTCCAGCGGCACATCC 60.360 61.111 1.45 0.00 0.00 3.51
662 680 2.690778 GGTGTTCCAGCGGCACATC 61.691 63.158 1.45 0.00 35.05 3.06
663 681 2.672996 GGTGTTCCAGCGGCACAT 60.673 61.111 1.45 0.00 35.05 3.21
740 758 1.686052 CTTCTGTAGCCTGGCCTAGAG 59.314 57.143 16.57 14.16 31.81 2.43
745 771 0.107459 CCTTCTTCTGTAGCCTGGCC 60.107 60.000 16.57 0.00 0.00 5.36
748 774 4.389374 TGTTTTCCTTCTTCTGTAGCCTG 58.611 43.478 0.00 0.00 0.00 4.85
903 938 5.366477 GGAGAGAAAGAAGGAGATGGAGATT 59.634 44.000 0.00 0.00 0.00 2.40
939 974 1.302431 CAATGGCCGGAGTCACACA 60.302 57.895 5.05 0.00 0.00 3.72
1051 1093 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1053 1095 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1059 1101 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
1095 1141 7.428282 TGCGAACTAAAACAGATCATAACAA 57.572 32.000 0.00 0.00 0.00 2.83
1129 1175 1.126846 GTTTCGTTCGTGGATGCAGAG 59.873 52.381 0.00 0.00 0.00 3.35
1157 1203 6.382869 AGAAACAGAGTTTGAACAAGATGG 57.617 37.500 0.00 0.00 0.00 3.51
1199 1245 2.652348 ACCTCTCTCTTTCTCTCTCCCA 59.348 50.000 0.00 0.00 0.00 4.37
1219 1265 2.187351 TGTTTTGCGCTCTTTCACAC 57.813 45.000 9.73 0.00 0.00 3.82
1222 1268 3.186119 CCTTTTGTTTTGCGCTCTTTCA 58.814 40.909 9.73 0.00 0.00 2.69
1223 1269 3.186909 ACCTTTTGTTTTGCGCTCTTTC 58.813 40.909 9.73 0.00 0.00 2.62
1225 1271 2.929398 CAACCTTTTGTTTTGCGCTCTT 59.071 40.909 9.73 0.00 34.00 2.85
1227 1273 1.592543 CCAACCTTTTGTTTTGCGCTC 59.407 47.619 9.73 0.00 34.00 5.03
1228 1274 1.650825 CCAACCTTTTGTTTTGCGCT 58.349 45.000 9.73 0.00 34.00 5.92
1229 1275 0.655208 CCCAACCTTTTGTTTTGCGC 59.345 50.000 0.00 0.00 34.00 6.09
1230 1276 1.294857 CCCCAACCTTTTGTTTTGCG 58.705 50.000 0.00 0.00 34.00 4.85
1231 1277 1.065053 ACCCCCAACCTTTTGTTTTGC 60.065 47.619 0.00 0.00 34.00 3.68
1232 1278 3.358111 AACCCCCAACCTTTTGTTTTG 57.642 42.857 0.00 0.00 34.00 2.44
1233 1279 4.337145 GAAAACCCCCAACCTTTTGTTTT 58.663 39.130 0.00 0.00 38.28 2.43
1234 1280 3.620226 CGAAAACCCCCAACCTTTTGTTT 60.620 43.478 0.00 0.00 34.00 2.83
1235 1281 2.093394 CGAAAACCCCCAACCTTTTGTT 60.093 45.455 0.00 0.00 37.80 2.83
1236 1282 1.483004 CGAAAACCCCCAACCTTTTGT 59.517 47.619 0.00 0.00 0.00 2.83
1237 1283 1.757699 TCGAAAACCCCCAACCTTTTG 59.242 47.619 0.00 0.00 0.00 2.44
1245 1291 1.071814 CGGAACTCGAAAACCCCCA 59.928 57.895 0.00 0.00 42.43 4.96
1404 1470 1.663695 CACAGTTTCACACGGGTTCT 58.336 50.000 0.00 0.00 0.00 3.01
1419 1490 4.753516 TGGATATTAGACACCACCACAG 57.246 45.455 0.00 0.00 0.00 3.66
1525 1602 7.814587 CACCGATCATATGAAGCTGATACTTAA 59.185 37.037 9.99 0.00 32.36 1.85
1537 1614 4.322080 GGACTCACACCGATCATATGAA 57.678 45.455 9.99 0.00 0.00 2.57
1555 1632 1.132453 GTTAAGGCAAAGCATCCGGAC 59.868 52.381 6.12 0.00 0.00 4.79
1606 1683 4.008074 ACACTGTTTCGACTGGATGATT 57.992 40.909 0.00 0.00 0.00 2.57
1607 1684 3.685139 ACACTGTTTCGACTGGATGAT 57.315 42.857 0.00 0.00 0.00 2.45
1608 1685 3.390135 GAACACTGTTTCGACTGGATGA 58.610 45.455 0.00 0.00 0.00 2.92
1609 1686 2.480419 GGAACACTGTTTCGACTGGATG 59.520 50.000 0.00 0.00 0.00 3.51
1610 1687 2.550208 GGGAACACTGTTTCGACTGGAT 60.550 50.000 0.00 0.00 0.00 3.41
1611 1688 1.202604 GGGAACACTGTTTCGACTGGA 60.203 52.381 0.00 0.00 0.00 3.86
1612 1689 1.202651 AGGGAACACTGTTTCGACTGG 60.203 52.381 0.00 0.00 0.00 4.00
1613 1690 2.135933 GAGGGAACACTGTTTCGACTG 58.864 52.381 0.00 0.00 0.00 3.51
1614 1691 1.269621 CGAGGGAACACTGTTTCGACT 60.270 52.381 8.25 0.00 0.00 4.18
1615 1692 1.137513 CGAGGGAACACTGTTTCGAC 58.862 55.000 8.25 0.00 0.00 4.20
1616 1693 0.599204 GCGAGGGAACACTGTTTCGA 60.599 55.000 15.48 0.00 0.00 3.71
1617 1694 0.600255 AGCGAGGGAACACTGTTTCG 60.600 55.000 9.26 9.26 0.00 3.46
1618 1695 0.868406 CAGCGAGGGAACACTGTTTC 59.132 55.000 0.00 0.00 0.00 2.78
1621 1698 1.115930 AGACAGCGAGGGAACACTGT 61.116 55.000 0.00 0.00 41.89 3.55
1639 1716 9.528018 TTGTAAATTAAAAGAACAGCTGGAAAG 57.472 29.630 19.93 0.00 0.00 2.62
1658 1735 9.857656 ACAGACTGGATGATGATAATTGTAAAT 57.142 29.630 7.51 0.00 0.00 1.40
1712 1796 9.790389 ATATTTGAAACAAGAAACACAACGTAA 57.210 25.926 0.00 0.00 0.00 3.18
1763 1847 8.937207 ACTCCTACGTACTCTTTTCCATATAT 57.063 34.615 0.00 0.00 0.00 0.86
1833 1917 5.356470 AGCAGCAAAAAGATTGGAGACTATC 59.644 40.000 0.00 0.00 42.04 2.08
1843 1927 3.854784 GCGACAGAAGCAGCAAAAAGATT 60.855 43.478 0.00 0.00 34.19 2.40
1847 1931 0.737804 TGCGACAGAAGCAGCAAAAA 59.262 45.000 0.00 0.00 40.01 1.94
1865 1949 2.039746 TCCAAGTACAAGGTGGACCATG 59.960 50.000 0.00 0.00 40.34 3.66
1982 2069 8.697507 ATGGAGAGTTTAAAGAGTGTGATTTT 57.302 30.769 0.00 0.00 0.00 1.82
1984 2071 9.793259 TTAATGGAGAGTTTAAAGAGTGTGATT 57.207 29.630 0.00 0.00 0.00 2.57
2024 2112 7.558604 AGTAGTCCACCGCAAAAATAATAGTA 58.441 34.615 0.00 0.00 0.00 1.82
2135 2223 2.890808 AGTTCTTGCAAGAGACGTGA 57.109 45.000 27.02 10.54 36.22 4.35
2136 2224 3.126831 AGAAGTTCTTGCAAGAGACGTG 58.873 45.455 27.02 1.05 36.22 4.49
2144 2233 9.912634 CTTAATCCAAATAAGAAGTTCTTGCAA 57.087 29.630 25.27 8.54 37.29 4.08
2218 2312 7.201591 CGGCATGATATTACCAGAATCTCATTC 60.202 40.741 0.00 0.00 39.56 2.67
2239 2333 1.750778 GTGAAAATCCACCATCGGCAT 59.249 47.619 0.00 0.00 0.00 4.40
2242 2336 4.122776 CTCTAGTGAAAATCCACCATCGG 58.877 47.826 0.00 0.00 37.76 4.18
2287 2381 7.703058 AATCTGGAATACGGAAGTTCATTTT 57.297 32.000 5.01 0.00 46.40 1.82
2291 2385 4.394920 GCAAATCTGGAATACGGAAGTTCA 59.605 41.667 5.01 0.00 46.40 3.18
2321 2415 7.469537 ACTGCTAGTCTCAAAATACTACAGT 57.530 36.000 0.00 0.00 36.65 3.55
2322 2416 9.672086 GATACTGCTAGTCTCAAAATACTACAG 57.328 37.037 0.00 0.00 35.62 2.74
2400 2494 2.583024 TCAATCAATGCCACCTCACA 57.417 45.000 0.00 0.00 0.00 3.58
2435 2529 1.790481 GCGCTCGCCAAAGACAAATAC 60.790 52.381 0.00 0.00 34.56 1.89
2450 2544 2.886124 GGCCAAGTAGTCGCGCTC 60.886 66.667 5.56 0.00 0.00 5.03
2453 2547 1.447838 ACATGGCCAAGTAGTCGCG 60.448 57.895 12.93 0.00 0.00 5.87
2489 2583 6.936900 CAGAGGTTGAGTGATTCCTTTTCTAA 59.063 38.462 0.00 0.00 0.00 2.10
2490 2584 6.270000 TCAGAGGTTGAGTGATTCCTTTTCTA 59.730 38.462 0.00 0.00 0.00 2.10
2507 2601 5.104982 TGGCAACTTTGAATTTTCAGAGGTT 60.105 36.000 13.48 8.12 42.03 3.50
2592 2686 9.921637 TGGGACTTATCAACAACAATTAATTTC 57.078 29.630 0.00 0.00 0.00 2.17
2955 3080 2.093921 CACATGCCATTCAGATTGCCAA 60.094 45.455 0.00 0.00 0.00 4.52
2984 3109 0.460284 CCCCGCTGTGAGTATGACAC 60.460 60.000 0.00 0.00 0.00 3.67
3000 3126 1.960689 TGTAGCTTTGAAAACTGCCCC 59.039 47.619 0.00 0.00 0.00 5.80
3037 3163 5.095490 CAGCGAACCCTAAATGATTTGAAC 58.905 41.667 0.00 0.00 0.00 3.18
3050 3176 2.306847 ACAAAAACATCAGCGAACCCT 58.693 42.857 0.00 0.00 0.00 4.34
3133 3266 0.994247 ATCTCCACCATCTGCCACAA 59.006 50.000 0.00 0.00 0.00 3.33
3261 3394 1.421268 ACAATGTTCAGGCTGACCTCA 59.579 47.619 18.55 16.45 46.34 3.86
3411 3544 4.505566 CCAGAGATGGAGTTGAAGTTTGGA 60.506 45.833 0.00 0.00 0.00 3.53
3508 3641 3.394674 TGTCGGATTTGCTACAGTGAA 57.605 42.857 0.00 0.00 0.00 3.18
3579 3773 2.011947 TGTTGAGTAGCTGCATCATGC 58.988 47.619 1.35 1.35 45.29 4.06
3635 3847 0.889306 GGCTGTAGTCCACGTTCTCT 59.111 55.000 0.00 0.00 0.00 3.10
3671 3883 0.544357 ATCCGAACACCTGACCTGGA 60.544 55.000 0.00 0.00 0.00 3.86
3677 3889 1.003118 CCCAAGAATCCGAACACCTGA 59.997 52.381 0.00 0.00 0.00 3.86
3710 3922 0.970937 CGGAGTAGGAGAAGGCCACA 60.971 60.000 5.01 0.00 0.00 4.17
3818 4030 0.319813 CGGCGATGATGATGTAGGCA 60.320 55.000 0.00 0.00 0.00 4.75
3881 4093 0.029167 TGTTGTCGTCGACGCTGTTA 59.971 50.000 32.19 12.84 39.60 2.41
4059 4454 4.778534 AAATCTGCACAGGAACAATCAG 57.221 40.909 0.00 0.00 0.00 2.90
4115 4510 1.197430 ACTCCAGCTTCCTCACCAGG 61.197 60.000 0.00 0.00 42.01 4.45
4405 4828 2.290577 GGTCCAATCTCACCAGAAGCTT 60.291 50.000 0.00 0.00 32.33 3.74
4413 4836 6.260936 CAGTTACATTATGGTCCAATCTCACC 59.739 42.308 0.00 0.00 0.00 4.02
4431 4854 0.322456 GGCAGCCATGACCAGTTACA 60.322 55.000 6.55 0.00 0.00 2.41
4432 4855 0.035056 AGGCAGCCATGACCAGTTAC 60.035 55.000 15.80 0.00 33.44 2.50
4433 4856 0.035152 CAGGCAGCCATGACCAGTTA 60.035 55.000 15.80 0.00 33.44 2.24
4437 4860 3.931190 CTGCAGGCAGCCATGACCA 62.931 63.158 15.80 1.81 44.83 4.02
4438 4861 3.138798 CTGCAGGCAGCCATGACC 61.139 66.667 15.80 0.00 44.83 4.02
4540 4963 4.044698 AGAGGGGTAAAAGCTTTGGATCTT 59.955 41.667 13.54 0.00 0.00 2.40
4557 4980 4.134563 TCGTTTTGAAGAAAAGAGAGGGG 58.865 43.478 0.00 0.00 31.57 4.79
4574 4997 6.265422 GGAAAATCAGGATGGGATTATCGTTT 59.735 38.462 0.00 0.00 34.02 3.60
4669 5092 4.639310 GTCTTGGCAGAAATGATGATCTGT 59.361 41.667 9.39 0.00 43.91 3.41
4723 5146 1.202568 GCGATGATGATGAACGGCG 59.797 57.895 4.80 4.80 0.00 6.46
4833 5257 0.037605 AAACTAAGCAGACCGTCCGG 60.038 55.000 3.76 3.76 42.03 5.14
5038 5462 9.887629 ACAGATATGCAGGAATAATCTATGAAG 57.112 33.333 0.00 0.00 0.00 3.02
5040 5464 8.819845 ACACAGATATGCAGGAATAATCTATGA 58.180 33.333 0.00 0.00 0.00 2.15
5041 5465 9.445878 AACACAGATATGCAGGAATAATCTATG 57.554 33.333 0.00 0.00 0.00 2.23
5059 5486 8.960591 TCTCAAAGAAAGAAAAAGAACACAGAT 58.039 29.630 0.00 0.00 0.00 2.90
5082 5509 5.447010 GCAAGAACAGCACAGACATTATCTC 60.447 44.000 0.00 0.00 34.41 2.75
5083 5510 4.394300 GCAAGAACAGCACAGACATTATCT 59.606 41.667 0.00 0.00 38.66 1.98
5084 5511 4.394300 AGCAAGAACAGCACAGACATTATC 59.606 41.667 0.00 0.00 0.00 1.75
5085 5512 4.155462 CAGCAAGAACAGCACAGACATTAT 59.845 41.667 0.00 0.00 0.00 1.28
5086 5513 3.499537 CAGCAAGAACAGCACAGACATTA 59.500 43.478 0.00 0.00 0.00 1.90
5087 5514 2.292569 CAGCAAGAACAGCACAGACATT 59.707 45.455 0.00 0.00 0.00 2.71
5088 5515 1.878088 CAGCAAGAACAGCACAGACAT 59.122 47.619 0.00 0.00 0.00 3.06
5090 5517 1.303309 ACAGCAAGAACAGCACAGAC 58.697 50.000 0.00 0.00 0.00 3.51
5091 5518 2.365293 TCTACAGCAAGAACAGCACAGA 59.635 45.455 0.00 0.00 0.00 3.41
5092 5519 2.759191 TCTACAGCAAGAACAGCACAG 58.241 47.619 0.00 0.00 0.00 3.66
5093 5520 2.908688 TCTACAGCAAGAACAGCACA 57.091 45.000 0.00 0.00 0.00 4.57
5094 5521 6.428385 AATAATCTACAGCAAGAACAGCAC 57.572 37.500 0.00 0.00 0.00 4.40
5095 5522 5.586243 GGAATAATCTACAGCAAGAACAGCA 59.414 40.000 0.00 0.00 0.00 4.41
5096 5523 5.819901 AGGAATAATCTACAGCAAGAACAGC 59.180 40.000 0.00 0.00 0.00 4.40
5099 5526 5.277058 CGCAGGAATAATCTACAGCAAGAAC 60.277 44.000 0.00 0.00 0.00 3.01
5156 5585 1.203994 AGCATGTGAAAAGGCAGCATC 59.796 47.619 0.00 0.00 0.00 3.91
5214 5644 5.163550 GCATTTAGGTTGATTAACTGGGACC 60.164 44.000 0.00 0.00 36.99 4.46
5236 5666 1.241165 CTGACTTGTTCCATGCTGCA 58.759 50.000 4.13 4.13 0.00 4.41
5323 5771 6.633634 GGTTCGCTGATACTATTATATCGCTC 59.366 42.308 0.00 0.00 34.75 5.03
5337 5785 1.480683 CCTAGGGGAGGTTCGCTGATA 60.481 57.143 0.00 0.00 40.98 2.15
5360 5808 6.799926 TTCTTTGCTGCAAAACTTTTTCTT 57.200 29.167 25.93 0.00 32.75 2.52
5361 5809 6.204495 TGTTTCTTTGCTGCAAAACTTTTTCT 59.796 30.769 25.93 0.00 32.75 2.52
5363 5811 6.311055 TGTTTCTTTGCTGCAAAACTTTTT 57.689 29.167 25.93 0.00 32.75 1.94
5398 5911 4.219725 GGCAAATTTAGTTGGTAAGAGGCA 59.780 41.667 0.00 0.00 0.00 4.75
5436 5949 8.958119 AGATGATGTTATTGGTAATGTTACGT 57.042 30.769 0.00 0.00 34.50 3.57
5447 5960 5.887598 TCTCCACCAAAGATGATGTTATTGG 59.112 40.000 0.00 0.00 44.75 3.16
5448 5961 7.395190 TTCTCCACCAAAGATGATGTTATTG 57.605 36.000 0.00 0.00 0.00 1.90
5449 5962 8.306761 GTTTTCTCCACCAAAGATGATGTTATT 58.693 33.333 0.00 0.00 0.00 1.40
5450 5963 7.451255 TGTTTTCTCCACCAAAGATGATGTTAT 59.549 33.333 0.00 0.00 0.00 1.89
5451 5964 6.775142 TGTTTTCTCCACCAAAGATGATGTTA 59.225 34.615 0.00 0.00 0.00 2.41
5452 5965 5.598005 TGTTTTCTCCACCAAAGATGATGTT 59.402 36.000 0.00 0.00 0.00 2.71
5453 5966 5.139727 TGTTTTCTCCACCAAAGATGATGT 58.860 37.500 0.00 0.00 0.00 3.06
5454 5967 5.710513 TGTTTTCTCCACCAAAGATGATG 57.289 39.130 0.00 0.00 0.00 3.07
5455 5968 6.923199 ATTGTTTTCTCCACCAAAGATGAT 57.077 33.333 0.00 0.00 0.00 2.45
5456 5969 7.831691 TTATTGTTTTCTCCACCAAAGATGA 57.168 32.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.