Multiple sequence alignment - TraesCS7D01G309100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G309100 chr7D 100.000 7901 0 0 1 7901 392254658 392262558 0.000000e+00 14591.0
1 TraesCS7D01G309100 chr7D 87.651 413 39 3 3169 3571 573109241 573109651 3.340000e-128 470.0
2 TraesCS7D01G309100 chr7D 95.804 143 6 0 2872 3014 517335599 517335741 1.710000e-56 231.0
3 TraesCS7D01G309100 chr7D 91.720 157 6 3 6 155 511939884 511940040 2.230000e-50 211.0
4 TraesCS7D01G309100 chr7D 93.590 78 5 0 3085 3162 566960715 566960792 5.010000e-22 117.0
5 TraesCS7D01G309100 chr7A 97.707 4449 66 14 3146 7565 443957892 443962333 0.000000e+00 7618.0
6 TraesCS7D01G309100 chr7A 98.483 2702 35 4 178 2875 443954978 443957677 0.000000e+00 4758.0
7 TraesCS7D01G309100 chr7A 98.198 111 2 0 3016 3126 443957675 443957785 2.250000e-45 195.0
8 TraesCS7D01G309100 chr7B 92.947 4381 173 45 3574 7901 388591306 388595603 0.000000e+00 6253.0
9 TraesCS7D01G309100 chr7B 97.083 2708 56 12 179 2875 388588528 388591223 0.000000e+00 4542.0
10 TraesCS7D01G309100 chr7B 85.000 420 50 4 3167 3576 570462366 570461950 1.590000e-111 414.0
11 TraesCS7D01G309100 chr7B 84.185 411 54 2 3167 3568 64495156 64495564 9.610000e-104 388.0
12 TraesCS7D01G309100 chr7B 91.463 164 7 5 1 157 662648614 662648451 1.330000e-52 219.0
13 TraesCS7D01G309100 chr7B 98.649 74 1 0 3016 3089 388591221 388591294 1.790000e-26 132.0
14 TraesCS7D01G309100 chr7B 88.235 85 10 0 5564 5648 388593156 388593240 1.400000e-17 102.0
15 TraesCS7D01G309100 chr7B 88.312 77 9 0 6471 6547 734775873 734775797 8.440000e-15 93.5
16 TraesCS7D01G309100 chr1D 87.019 416 39 8 3171 3576 308461992 308462402 9.350000e-124 455.0
17 TraesCS7D01G309100 chr1D 90.909 165 6 5 1 156 257424770 257424606 6.210000e-51 213.0
18 TraesCS7D01G309100 chr1D 90.625 160 8 3 2 154 433907865 433907706 1.040000e-48 206.0
19 TraesCS7D01G309100 chr4B 84.964 419 51 3 3168 3577 33626159 33625744 1.590000e-111 414.0
20 TraesCS7D01G309100 chr4B 97.315 149 4 0 2872 3020 398790178 398790326 3.660000e-63 254.0
21 TraesCS7D01G309100 chr2A 85.194 412 46 6 3172 3571 584516390 584516798 7.380000e-110 409.0
22 TraesCS7D01G309100 chr2A 96.429 140 4 1 2875 3014 70056865 70056727 6.170000e-56 230.0
23 TraesCS7D01G309100 chr2A 85.075 67 8 2 3413 3478 34320536 34320471 5.120000e-07 67.6
24 TraesCS7D01G309100 chr2A 92.105 38 2 1 3541 3577 367647793 367647830 1.400000e-02 52.8
25 TraesCS7D01G309100 chr5D 84.010 419 49 10 3170 3575 490931122 490931535 3.460000e-103 387.0
26 TraesCS7D01G309100 chr5D 96.622 148 5 0 2875 3022 37189328 37189181 6.120000e-61 246.0
27 TraesCS7D01G309100 chr5D 89.091 165 10 4 2 158 135516805 135516969 1.740000e-46 198.0
28 TraesCS7D01G309100 chr5D 82.424 165 26 2 3413 3577 112344543 112344382 2.970000e-29 141.0
29 TraesCS7D01G309100 chr4D 84.772 394 42 8 3153 3536 496612670 496613055 5.790000e-101 379.0
30 TraesCS7D01G309100 chr4D 97.987 149 3 0 2870 3018 14942055 14941907 7.870000e-65 259.0
31 TraesCS7D01G309100 chr4D 91.195 159 7 3 2 153 73211779 73211937 8.030000e-50 209.0
32 TraesCS7D01G309100 chr5A 79.717 424 63 7 3171 3577 115247325 115246908 1.300000e-72 285.0
33 TraesCS7D01G309100 chr2D 98.582 141 2 0 2875 3015 135316972 135317112 4.730000e-62 250.0
34 TraesCS7D01G309100 chr2D 92.157 153 7 1 6 153 367987382 367987230 2.230000e-50 211.0
35 TraesCS7D01G309100 chr2D 96.000 75 3 0 3086 3160 376701261 376701187 1.080000e-23 122.0
36 TraesCS7D01G309100 chr2D 94.595 74 4 0 3087 3160 8495904 8495977 1.800000e-21 115.0
37 TraesCS7D01G309100 chr2D 76.364 165 31 6 3413 3574 32180899 32180740 1.830000e-11 82.4
38 TraesCS7D01G309100 chr2D 100.000 28 0 0 3550 3577 15851809 15851782 1.400000e-02 52.8
39 TraesCS7D01G309100 chr2D 92.105 38 2 1 3541 3577 296362677 296362714 1.400000e-02 52.8
40 TraesCS7D01G309100 chr4A 97.203 143 2 2 2873 3014 36371016 36371157 2.850000e-59 241.0
41 TraesCS7D01G309100 chr4A 100.000 29 0 0 3550 3578 78321376 78321348 4.000000e-03 54.7
42 TraesCS7D01G309100 chr5B 98.519 135 2 0 2872 3006 2580306 2580440 1.020000e-58 239.0
43 TraesCS7D01G309100 chr5B 91.720 157 7 2 1 151 448291704 448291548 6.210000e-51 213.0
44 TraesCS7D01G309100 chr1A 94.595 148 8 0 2871 3018 547944618 547944471 6.170000e-56 230.0
45 TraesCS7D01G309100 chr1A 91.083 157 6 4 6 154 232089198 232089042 1.040000e-48 206.0
46 TraesCS7D01G309100 chr6B 76.540 341 48 21 3212 3525 85789528 85789193 2.950000e-34 158.0
47 TraesCS7D01G309100 chr6B 89.888 89 6 2 3085 3170 553057203 553057115 2.330000e-20 111.0
48 TraesCS7D01G309100 chr3D 94.872 78 4 0 3085 3162 555598244 555598321 1.080000e-23 122.0
49 TraesCS7D01G309100 chrUn 94.667 75 4 0 3086 3160 31324798 31324872 5.010000e-22 117.0
50 TraesCS7D01G309100 chr6D 93.421 76 4 1 3085 3159 368365284 368365359 2.330000e-20 111.0
51 TraesCS7D01G309100 chr6A 93.421 76 4 1 3085 3159 509279057 509279132 2.330000e-20 111.0
52 TraesCS7D01G309100 chr2B 92.105 38 2 1 3541 3577 366019067 366019030 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G309100 chr7D 392254658 392262558 7900 False 14591.000000 14591 100.000000 1 7901 1 chr7D.!!$F1 7900
1 TraesCS7D01G309100 chr7A 443954978 443962333 7355 False 4190.333333 7618 98.129333 178 7565 3 chr7A.!!$F1 7387
2 TraesCS7D01G309100 chr7B 388588528 388595603 7075 False 2757.250000 6253 94.228500 179 7901 4 chr7B.!!$F2 7722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.033228 CAAATGCAAAACTGGGCGGA 59.967 50.000 0.00 0.00 0.00 5.54 F
76 77 0.033366 AAATGCAAAACTGGGCGGAC 59.967 50.000 0.00 0.00 0.00 4.79 F
152 153 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10 F
339 340 1.007336 CCTATAATCGCACCGTCCGC 61.007 60.000 0.00 0.00 0.00 5.54 F
1188 1196 1.711060 CCGGATTTAATGTGCCGCGT 61.711 55.000 4.92 0.00 42.29 6.01 F
2900 2912 0.102663 GTTCGGAATCTCTCCCGTCC 59.897 60.000 0.00 0.00 45.48 4.79 F
2951 2963 0.036732 TTGAGCTGCTCCGTGGAAAT 59.963 50.000 25.61 0.00 0.00 2.17 F
2955 2967 0.378610 GCTGCTCCGTGGAAATAAGC 59.621 55.000 0.00 0.00 0.00 3.09 F
2970 2982 0.673644 TAAGCTGCAGTTTCCTCCGC 60.674 55.000 19.79 0.00 0.00 5.54 F
3363 3462 1.002857 AGTGGGGAGAAATGAAGGGG 58.997 55.000 0.00 0.00 0.00 4.79 F
3634 3734 1.065854 ACTCGCCTTGCTAGCAATCTT 60.066 47.619 29.40 9.11 35.20 2.40 F
5248 5357 1.757731 TGTTTGGCTGGCACAAGCT 60.758 52.632 2.29 0.00 38.70 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1188 1196 0.179234 TCGGCAACTCAAAGACCACA 59.821 50.000 0.00 0.00 0.00 4.17 R
1357 1365 3.452264 AGCTTCCCATCCTTTTTATTGCC 59.548 43.478 0.00 0.00 0.00 4.52 R
2261 2269 6.727231 TGTAGGGTTTCCAGACTGATTTACTA 59.273 38.462 3.32 0.00 34.83 1.82 R
2703 2714 9.787435 TGGTAACAGTTAAGTCAAGATACAAAT 57.213 29.630 0.00 0.00 46.17 2.32 R
2932 2944 0.036732 ATTTCCACGGAGCAGCTCAA 59.963 50.000 24.09 8.81 31.08 3.02 R
5064 5172 3.858503 GCAAGAGCTGGTTTGGCTTAAAG 60.859 47.826 0.00 0.00 40.40 1.85 R
5248 5357 7.093068 TGCTCAGATTGTCTATAGTTTGGGTTA 60.093 37.037 0.00 0.00 0.00 2.85 R
5544 5653 2.943036 ACACAGTCCGGGTTGTAATT 57.057 45.000 0.00 0.00 0.00 1.40 R
5555 5664 1.541588 GGCTCCATTTGAACACAGTCC 59.458 52.381 0.00 0.00 0.00 3.85 R
5801 5910 2.159393 GCAAAGCCAATCGATAAGCACA 60.159 45.455 18.60 0.00 0.00 4.57 R
5968 6077 2.671396 AGACCGCATAAAAGTACAAGCG 59.329 45.455 0.00 0.00 44.24 4.68 R
7712 7853 1.338337 AGATCACTGACGCCTATTCCG 59.662 52.381 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.408835 CATGAAATGGGTCGGCGC 59.591 61.111 0.00 0.00 41.79 6.53
37 38 3.202001 ATGAAATGGGTCGGCGCG 61.202 61.111 0.00 0.00 0.00 6.86
38 39 3.969250 ATGAAATGGGTCGGCGCGT 62.969 57.895 8.43 0.00 0.00 6.01
39 40 3.428282 GAAATGGGTCGGCGCGTT 61.428 61.111 8.43 5.61 38.23 4.84
40 41 3.661025 GAAATGGGTCGGCGCGTTG 62.661 63.158 12.62 0.00 36.96 4.10
60 61 3.434319 CGCGCTGCTGACCCAAAT 61.434 61.111 5.56 0.00 0.00 2.32
61 62 2.180017 GCGCTGCTGACCCAAATG 59.820 61.111 0.00 0.00 0.00 2.32
62 63 2.180017 CGCTGCTGACCCAAATGC 59.820 61.111 0.00 0.00 0.00 3.56
63 64 2.628696 CGCTGCTGACCCAAATGCA 61.629 57.895 0.00 0.00 0.00 3.96
64 65 1.667151 GCTGCTGACCCAAATGCAA 59.333 52.632 0.00 0.00 34.90 4.08
65 66 0.033781 GCTGCTGACCCAAATGCAAA 59.966 50.000 0.00 0.00 34.90 3.68
66 67 1.540797 GCTGCTGACCCAAATGCAAAA 60.541 47.619 0.00 0.00 34.90 2.44
67 68 2.137523 CTGCTGACCCAAATGCAAAAC 58.862 47.619 0.00 0.00 34.90 2.43
68 69 1.761784 TGCTGACCCAAATGCAAAACT 59.238 42.857 0.00 0.00 32.12 2.66
69 70 2.137523 GCTGACCCAAATGCAAAACTG 58.862 47.619 0.00 0.00 0.00 3.16
70 71 2.758009 CTGACCCAAATGCAAAACTGG 58.242 47.619 0.00 0.00 0.00 4.00
72 73 2.931246 CCCAAATGCAAAACTGGGC 58.069 52.632 11.50 0.00 42.10 5.36
73 74 0.950071 CCCAAATGCAAAACTGGGCG 60.950 55.000 11.50 0.00 42.10 6.13
74 75 0.950071 CCAAATGCAAAACTGGGCGG 60.950 55.000 0.00 0.00 0.00 6.13
75 76 0.033228 CAAATGCAAAACTGGGCGGA 59.967 50.000 0.00 0.00 0.00 5.54
76 77 0.033366 AAATGCAAAACTGGGCGGAC 59.967 50.000 0.00 0.00 0.00 4.79
77 78 2.141122 AATGCAAAACTGGGCGGACG 62.141 55.000 0.00 0.00 0.00 4.79
78 79 4.700365 GCAAAACTGGGCGGACGC 62.700 66.667 8.39 8.39 41.06 5.19
104 105 3.047877 CGGCCGACCCAAACAGAC 61.048 66.667 24.07 0.00 0.00 3.51
105 106 2.112297 GGCCGACCCAAACAGACA 59.888 61.111 0.00 0.00 0.00 3.41
106 107 1.527380 GGCCGACCCAAACAGACAA 60.527 57.895 0.00 0.00 0.00 3.18
107 108 1.104577 GGCCGACCCAAACAGACAAA 61.105 55.000 0.00 0.00 0.00 2.83
108 109 0.741915 GCCGACCCAAACAGACAAAA 59.258 50.000 0.00 0.00 0.00 2.44
109 110 1.135333 GCCGACCCAAACAGACAAAAA 59.865 47.619 0.00 0.00 0.00 1.94
110 111 2.798145 GCCGACCCAAACAGACAAAAAG 60.798 50.000 0.00 0.00 0.00 2.27
111 112 2.459934 CGACCCAAACAGACAAAAAGC 58.540 47.619 0.00 0.00 0.00 3.51
112 113 2.459934 GACCCAAACAGACAAAAAGCG 58.540 47.619 0.00 0.00 0.00 4.68
113 114 1.136110 ACCCAAACAGACAAAAAGCGG 59.864 47.619 0.00 0.00 0.00 5.52
114 115 1.407258 CCCAAACAGACAAAAAGCGGA 59.593 47.619 0.00 0.00 0.00 5.54
115 116 2.459934 CCAAACAGACAAAAAGCGGAC 58.540 47.619 0.00 0.00 0.00 4.79
116 117 2.159310 CCAAACAGACAAAAAGCGGACA 60.159 45.455 0.00 0.00 0.00 4.02
117 118 3.506810 CAAACAGACAAAAAGCGGACAA 58.493 40.909 0.00 0.00 0.00 3.18
118 119 3.859411 AACAGACAAAAAGCGGACAAA 57.141 38.095 0.00 0.00 0.00 2.83
119 120 4.385358 AACAGACAAAAAGCGGACAAAT 57.615 36.364 0.00 0.00 0.00 2.32
120 121 3.705604 ACAGACAAAAAGCGGACAAATG 58.294 40.909 0.00 0.00 0.00 2.32
121 122 2.472488 CAGACAAAAAGCGGACAAATGC 59.528 45.455 0.00 0.00 0.00 3.56
122 123 1.451651 GACAAAAAGCGGACAAATGCG 59.548 47.619 0.00 0.00 43.57 4.73
128 129 2.501650 CGGACAAATGCGCGTTGG 60.502 61.111 17.00 16.11 30.90 3.77
129 130 2.126502 GGACAAATGCGCGTTGGG 60.127 61.111 20.58 15.70 0.00 4.12
130 131 2.642700 GACAAATGCGCGTTGGGT 59.357 55.556 20.58 18.63 0.00 4.51
131 132 1.442017 GACAAATGCGCGTTGGGTC 60.442 57.895 23.34 23.34 0.00 4.46
132 133 2.501650 CAAATGCGCGTTGGGTCG 60.502 61.111 17.00 0.00 0.00 4.79
133 134 3.732892 AAATGCGCGTTGGGTCGG 61.733 61.111 17.00 0.00 0.00 4.79
145 146 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
146 147 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
149 150 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
150 151 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
151 152 1.295423 GCCCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
152 153 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10
153 154 1.726853 CCCGTTGGAGTTGCTCTAAG 58.273 55.000 0.00 0.00 31.92 2.18
154 155 1.275291 CCCGTTGGAGTTGCTCTAAGA 59.725 52.381 0.00 0.00 31.92 2.10
155 156 2.289444 CCCGTTGGAGTTGCTCTAAGAA 60.289 50.000 0.00 0.00 31.92 2.52
156 157 2.737252 CCGTTGGAGTTGCTCTAAGAAC 59.263 50.000 0.00 0.00 31.92 3.01
157 158 3.555168 CCGTTGGAGTTGCTCTAAGAACT 60.555 47.826 0.00 0.00 31.92 3.01
158 159 4.058817 CGTTGGAGTTGCTCTAAGAACTT 58.941 43.478 0.00 0.00 31.92 2.66
159 160 4.084328 CGTTGGAGTTGCTCTAAGAACTTG 60.084 45.833 0.00 0.00 31.92 3.16
160 161 4.955811 TGGAGTTGCTCTAAGAACTTGA 57.044 40.909 0.00 0.00 32.47 3.02
161 162 5.489792 TGGAGTTGCTCTAAGAACTTGAT 57.510 39.130 0.00 0.00 32.47 2.57
162 163 6.605471 TGGAGTTGCTCTAAGAACTTGATA 57.395 37.500 0.00 0.00 32.47 2.15
163 164 7.004555 TGGAGTTGCTCTAAGAACTTGATAA 57.995 36.000 0.00 0.00 32.47 1.75
164 165 7.099764 TGGAGTTGCTCTAAGAACTTGATAAG 58.900 38.462 0.00 0.00 32.47 1.73
165 166 7.100409 GGAGTTGCTCTAAGAACTTGATAAGT 58.900 38.462 0.00 0.00 45.46 2.24
300 301 1.333177 AGCATACGAAGCCCTAGAGG 58.667 55.000 0.00 0.00 39.47 3.69
339 340 1.007336 CCTATAATCGCACCGTCCGC 61.007 60.000 0.00 0.00 0.00 5.54
945 953 2.692709 ATTGTGGTGGATTTGGGTGA 57.307 45.000 0.00 0.00 0.00 4.02
1188 1196 1.711060 CCGGATTTAATGTGCCGCGT 61.711 55.000 4.92 0.00 42.29 6.01
1357 1365 2.350522 CTCCCAGAGGTGATTTCAACG 58.649 52.381 0.00 0.00 38.92 4.10
2261 2269 8.649591 ACAGAAGCTTCTTGATGACTATGATAT 58.350 33.333 26.44 0.00 34.74 1.63
2793 2805 0.176910 CCATTCAATGCTGCATGCCA 59.823 50.000 17.00 7.22 42.00 4.92
2857 2869 3.614092 CCTGTGCTCACCTATTTGACAT 58.386 45.455 0.00 0.00 0.00 3.06
2872 2884 9.751542 CCTATTTGACATAGTCTTAACGATTCT 57.248 33.333 0.00 0.00 33.15 2.40
2876 2888 8.610855 TTGACATAGTCTTAACGATTCTTACG 57.389 34.615 0.00 0.00 33.15 3.18
2877 2889 7.191551 TGACATAGTCTTAACGATTCTTACGG 58.808 38.462 0.00 0.00 33.15 4.02
2878 2890 5.975939 ACATAGTCTTAACGATTCTTACGGC 59.024 40.000 0.00 0.00 34.93 5.68
2879 2891 3.778618 AGTCTTAACGATTCTTACGGCC 58.221 45.455 0.00 0.00 34.93 6.13
2880 2892 3.446516 AGTCTTAACGATTCTTACGGCCT 59.553 43.478 0.00 0.00 34.93 5.19
2881 2893 3.550678 GTCTTAACGATTCTTACGGCCTG 59.449 47.826 0.00 0.00 34.93 4.85
2882 2894 3.194116 TCTTAACGATTCTTACGGCCTGT 59.806 43.478 0.00 2.95 34.93 4.00
2883 2895 2.467566 AACGATTCTTACGGCCTGTT 57.532 45.000 0.00 0.00 34.93 3.16
2884 2896 2.005971 ACGATTCTTACGGCCTGTTC 57.994 50.000 0.00 0.00 34.93 3.18
2885 2897 0.921347 CGATTCTTACGGCCTGTTCG 59.079 55.000 0.00 2.94 0.00 3.95
2886 2898 1.287425 GATTCTTACGGCCTGTTCGG 58.713 55.000 0.00 0.00 0.00 4.30
2887 2899 0.899720 ATTCTTACGGCCTGTTCGGA 59.100 50.000 0.00 0.00 33.16 4.55
2888 2900 0.680618 TTCTTACGGCCTGTTCGGAA 59.319 50.000 0.00 3.90 33.16 4.30
2889 2901 0.899720 TCTTACGGCCTGTTCGGAAT 59.100 50.000 0.00 0.00 33.16 3.01
2890 2902 1.134907 TCTTACGGCCTGTTCGGAATC 60.135 52.381 0.00 0.00 33.16 2.52
2891 2903 0.899720 TTACGGCCTGTTCGGAATCT 59.100 50.000 0.00 0.00 33.16 2.40
2892 2904 0.458669 TACGGCCTGTTCGGAATCTC 59.541 55.000 0.00 0.00 33.16 2.75
2893 2905 1.258445 ACGGCCTGTTCGGAATCTCT 61.258 55.000 0.00 0.00 33.16 3.10
2894 2906 0.528684 CGGCCTGTTCGGAATCTCTC 60.529 60.000 0.00 0.00 33.16 3.20
2895 2907 0.179070 GGCCTGTTCGGAATCTCTCC 60.179 60.000 0.00 0.00 41.40 3.71
2896 2908 0.179070 GCCTGTTCGGAATCTCTCCC 60.179 60.000 0.00 0.00 41.87 4.30
2897 2909 0.103208 CCTGTTCGGAATCTCTCCCG 59.897 60.000 0.00 0.00 46.57 5.14
2898 2910 0.818296 CTGTTCGGAATCTCTCCCGT 59.182 55.000 0.00 0.00 45.48 5.28
2899 2911 0.815734 TGTTCGGAATCTCTCCCGTC 59.184 55.000 0.00 0.00 45.48 4.79
2900 2912 0.102663 GTTCGGAATCTCTCCCGTCC 59.897 60.000 0.00 0.00 45.48 4.79
2901 2913 2.722487 CGGAATCTCTCCCGTCCG 59.278 66.667 0.00 0.00 46.23 4.79
2902 2914 2.417936 GGAATCTCTCCCGTCCGC 59.582 66.667 0.00 0.00 38.44 5.54
2903 2915 2.128507 GGAATCTCTCCCGTCCGCT 61.129 63.158 0.00 0.00 38.44 5.52
2904 2916 1.360911 GAATCTCTCCCGTCCGCTC 59.639 63.158 0.00 0.00 0.00 5.03
2905 2917 2.077821 GAATCTCTCCCGTCCGCTCC 62.078 65.000 0.00 0.00 0.00 4.70
2906 2918 2.856039 AATCTCTCCCGTCCGCTCCA 62.856 60.000 0.00 0.00 0.00 3.86
2907 2919 3.827898 CTCTCCCGTCCGCTCCAC 61.828 72.222 0.00 0.00 0.00 4.02
2908 2920 4.361971 TCTCCCGTCCGCTCCACT 62.362 66.667 0.00 0.00 0.00 4.00
2909 2921 3.827898 CTCCCGTCCGCTCCACTC 61.828 72.222 0.00 0.00 0.00 3.51
2934 2946 4.606071 CTCCAGGAGCTCGGTTTG 57.394 61.111 7.83 3.56 0.00 2.93
2935 2947 1.975327 CTCCAGGAGCTCGGTTTGA 59.025 57.895 7.83 0.00 0.00 2.69
2943 2955 3.882025 CTCGGTTTGAGCTGCTCC 58.118 61.111 25.61 10.90 38.03 4.70
2944 2956 2.048222 TCGGTTTGAGCTGCTCCG 60.048 61.111 25.61 21.69 42.12 4.63
2945 2957 2.357517 CGGTTTGAGCTGCTCCGT 60.358 61.111 25.61 0.00 36.99 4.69
2946 2958 2.671177 CGGTTTGAGCTGCTCCGTG 61.671 63.158 25.61 8.39 36.99 4.94
2947 2959 2.328099 GGTTTGAGCTGCTCCGTGG 61.328 63.158 25.61 0.00 0.00 4.94
2948 2960 1.301716 GTTTGAGCTGCTCCGTGGA 60.302 57.895 25.61 4.83 0.00 4.02
2949 2961 0.884704 GTTTGAGCTGCTCCGTGGAA 60.885 55.000 25.61 10.89 0.00 3.53
2950 2962 0.179032 TTTGAGCTGCTCCGTGGAAA 60.179 50.000 25.61 15.95 0.00 3.13
2951 2963 0.036732 TTGAGCTGCTCCGTGGAAAT 59.963 50.000 25.61 0.00 0.00 2.17
2952 2964 0.901827 TGAGCTGCTCCGTGGAAATA 59.098 50.000 25.61 1.79 0.00 1.40
2953 2965 1.277842 TGAGCTGCTCCGTGGAAATAA 59.722 47.619 25.61 1.03 0.00 1.40
2954 2966 1.936547 GAGCTGCTCCGTGGAAATAAG 59.063 52.381 18.80 0.00 0.00 1.73
2955 2967 0.378610 GCTGCTCCGTGGAAATAAGC 59.621 55.000 0.00 0.00 0.00 3.09
2956 2968 2.014068 GCTGCTCCGTGGAAATAAGCT 61.014 52.381 0.00 0.00 34.11 3.74
2957 2969 1.667724 CTGCTCCGTGGAAATAAGCTG 59.332 52.381 0.00 0.00 34.11 4.24
2958 2970 0.378610 GCTCCGTGGAAATAAGCTGC 59.621 55.000 0.00 0.00 0.00 5.25
2959 2971 1.737838 CTCCGTGGAAATAAGCTGCA 58.262 50.000 1.02 0.00 0.00 4.41
2960 2972 1.667724 CTCCGTGGAAATAAGCTGCAG 59.332 52.381 10.11 10.11 0.00 4.41
2961 2973 1.003118 TCCGTGGAAATAAGCTGCAGT 59.997 47.619 16.64 0.00 0.00 4.40
2962 2974 1.812571 CCGTGGAAATAAGCTGCAGTT 59.187 47.619 16.64 6.37 0.00 3.16
2963 2975 2.228822 CCGTGGAAATAAGCTGCAGTTT 59.771 45.455 20.07 20.07 0.00 2.66
2964 2976 3.492313 CGTGGAAATAAGCTGCAGTTTC 58.508 45.455 19.79 17.32 0.00 2.78
2965 2977 3.670627 CGTGGAAATAAGCTGCAGTTTCC 60.671 47.826 27.60 27.60 46.15 3.13
2966 2978 3.507622 GTGGAAATAAGCTGCAGTTTCCT 59.492 43.478 31.04 16.35 46.13 3.36
2967 2979 3.758554 TGGAAATAAGCTGCAGTTTCCTC 59.241 43.478 31.04 21.04 46.13 3.71
2968 2980 3.129462 GGAAATAAGCTGCAGTTTCCTCC 59.871 47.826 27.28 22.17 43.85 4.30
2969 2981 2.029838 ATAAGCTGCAGTTTCCTCCG 57.970 50.000 19.79 0.00 0.00 4.63
2970 2982 0.673644 TAAGCTGCAGTTTCCTCCGC 60.674 55.000 19.79 0.00 0.00 5.54
2971 2983 2.359230 GCTGCAGTTTCCTCCGCT 60.359 61.111 16.64 0.00 0.00 5.52
2972 2984 2.394563 GCTGCAGTTTCCTCCGCTC 61.395 63.158 16.64 0.00 0.00 5.03
2973 2985 1.294780 CTGCAGTTTCCTCCGCTCT 59.705 57.895 5.25 0.00 0.00 4.09
2974 2986 1.004560 TGCAGTTTCCTCCGCTCTG 60.005 57.895 0.00 0.00 0.00 3.35
2975 2987 1.743252 GCAGTTTCCTCCGCTCTGG 60.743 63.158 0.00 0.00 40.09 3.86
2976 2988 1.078848 CAGTTTCCTCCGCTCTGGG 60.079 63.158 0.00 0.00 38.76 4.45
2977 2989 1.229209 AGTTTCCTCCGCTCTGGGA 60.229 57.895 0.00 0.00 38.76 4.37
2986 2998 4.828925 GCTCTGGGAGCGCAGTCC 62.829 72.222 11.47 8.98 45.85 3.85
2987 2999 3.385384 CTCTGGGAGCGCAGTCCA 61.385 66.667 16.67 15.31 38.52 4.02
2988 3000 3.368190 CTCTGGGAGCGCAGTCCAG 62.368 68.421 27.05 27.05 46.91 3.86
2989 3001 4.463879 CTGGGAGCGCAGTCCAGG 62.464 72.222 25.98 12.18 43.09 4.45
2992 3004 4.154347 GGAGCGCAGTCCAGGGAG 62.154 72.222 11.47 0.00 36.51 4.30
2993 3005 4.828925 GAGCGCAGTCCAGGGAGC 62.829 72.222 11.47 0.00 0.00 4.70
2997 3009 4.154347 GCAGTCCAGGGAGCGGAG 62.154 72.222 0.00 0.00 31.65 4.63
2998 3010 2.363018 CAGTCCAGGGAGCGGAGA 60.363 66.667 0.00 0.00 31.65 3.71
2999 3011 2.043450 AGTCCAGGGAGCGGAGAG 60.043 66.667 0.00 0.00 31.65 3.20
3000 3012 3.151022 GTCCAGGGAGCGGAGAGG 61.151 72.222 0.00 0.00 31.65 3.69
3001 3013 3.347590 TCCAGGGAGCGGAGAGGA 61.348 66.667 0.00 0.00 0.00 3.71
3002 3014 2.364317 CCAGGGAGCGGAGAGGAA 60.364 66.667 0.00 0.00 0.00 3.36
3003 3015 2.726351 CCAGGGAGCGGAGAGGAAC 61.726 68.421 0.00 0.00 0.00 3.62
3004 3016 2.364448 AGGGAGCGGAGAGGAACC 60.364 66.667 0.00 0.00 0.00 3.62
3012 3024 1.079057 GGAGAGGAACCGAACAGGC 60.079 63.158 0.00 0.00 46.52 4.85
3013 3025 1.079057 GAGAGGAACCGAACAGGCC 60.079 63.158 0.00 0.00 46.52 5.19
3014 3026 1.536662 AGAGGAACCGAACAGGCCT 60.537 57.895 0.00 0.00 46.52 5.19
3129 3141 5.899120 AAGAGCGTCTAGATCACTAAACA 57.101 39.130 0.00 0.00 37.82 2.83
3130 3142 5.238006 AGAGCGTCTAGATCACTAAACAC 57.762 43.478 0.00 0.00 37.82 3.32
3131 3143 4.944930 AGAGCGTCTAGATCACTAAACACT 59.055 41.667 0.00 0.00 37.82 3.55
3132 3144 5.065474 AGAGCGTCTAGATCACTAAACACTC 59.935 44.000 0.00 0.00 37.82 3.51
3133 3145 4.944930 AGCGTCTAGATCACTAAACACTCT 59.055 41.667 0.00 0.00 0.00 3.24
3134 3146 5.416326 AGCGTCTAGATCACTAAACACTCTT 59.584 40.000 0.00 0.00 0.00 2.85
3135 3147 6.598457 AGCGTCTAGATCACTAAACACTCTTA 59.402 38.462 0.00 0.00 0.00 2.10
3136 3148 7.283580 AGCGTCTAGATCACTAAACACTCTTAT 59.716 37.037 0.00 0.00 0.00 1.73
3137 3149 8.557864 GCGTCTAGATCACTAAACACTCTTATA 58.442 37.037 0.00 0.00 0.00 0.98
3294 3393 5.356470 AGAATGTTTGGCTTTCATCTAGCTC 59.644 40.000 0.00 0.00 38.67 4.09
3356 3455 3.528905 TGATTGGATGAGTGGGGAGAAAT 59.471 43.478 0.00 0.00 0.00 2.17
3363 3462 1.002857 AGTGGGGAGAAATGAAGGGG 58.997 55.000 0.00 0.00 0.00 4.79
3401 3500 6.015434 GGTGTCAAATTTCCTTACAACTCCAT 60.015 38.462 0.00 0.00 0.00 3.41
3634 3734 1.065854 ACTCGCCTTGCTAGCAATCTT 60.066 47.619 29.40 9.11 35.20 2.40
4058 4163 5.176774 CCATTTCATTTCGCATGAATCATGG 59.823 40.000 22.95 17.62 41.64 3.66
4184 4289 8.588290 TTTGCCTTACTTATCCATGTACAAAT 57.412 30.769 0.00 0.00 0.00 2.32
4437 4542 2.441750 TCCTGCTATATTGGACAACCCC 59.558 50.000 0.00 0.00 34.81 4.95
4640 4747 4.214119 ACACGATGAAACCAACATGAAGAG 59.786 41.667 0.00 0.00 0.00 2.85
5064 5172 7.088589 AGAGGTTGCACATAATACATTGTTC 57.911 36.000 0.00 0.00 0.00 3.18
5177 5286 9.213777 TCCAGTAACCTATTTCTCATATGACTT 57.786 33.333 0.00 0.00 0.00 3.01
5248 5357 1.757731 TGTTTGGCTGGCACAAGCT 60.758 52.632 2.29 0.00 38.70 3.74
5297 5406 7.336679 AGCAATTTATCCTGCCAAAATTAAACC 59.663 33.333 0.00 0.00 39.47 3.27
5555 5664 5.875930 GGATTGTCACTTAATTACAACCCG 58.124 41.667 0.00 0.00 36.06 5.28
5785 5894 7.636150 AGAAACAATATGGAATTCAGTGGAG 57.364 36.000 7.93 0.00 0.00 3.86
5801 5910 3.910627 AGTGGAGACCCAAACTTATCACT 59.089 43.478 0.00 0.00 45.59 3.41
5968 6077 3.827008 TTCTGCTGATGATGAGGGTAC 57.173 47.619 0.00 0.00 0.00 3.34
6031 6140 8.261492 TGTTTGGTACGTTTCTTTTACAGTTA 57.739 30.769 0.00 0.00 0.00 2.24
6904 7015 2.427453 GAGGGCGAAATAGACTGACAGA 59.573 50.000 10.08 0.00 0.00 3.41
7139 7250 1.067295 TGGAGTCAGCCCATCTTTGT 58.933 50.000 0.00 0.00 0.00 2.83
7229 7341 1.082194 TGATACTGAGGGAAAGGGGGT 59.918 52.381 0.00 0.00 0.00 4.95
7239 7351 0.040646 GAAAGGGGGTTGTTAGGGGG 59.959 60.000 0.00 0.00 0.00 5.40
7579 7720 7.831691 TTATTGTTTTCTCCACCAAAGATGA 57.168 32.000 0.00 0.00 0.00 2.92
7580 7721 6.923199 ATTGTTTTCTCCACCAAAGATGAT 57.077 33.333 0.00 0.00 0.00 2.45
7582 7723 5.139727 TGTTTTCTCCACCAAAGATGATGT 58.860 37.500 0.00 0.00 0.00 3.06
7583 7724 5.598005 TGTTTTCTCCACCAAAGATGATGTT 59.402 36.000 0.00 0.00 0.00 2.71
7585 7726 7.451255 TGTTTTCTCCACCAAAGATGATGTTAT 59.549 33.333 0.00 0.00 0.00 1.89
7587 7728 7.395190 TTCTCCACCAAAGATGATGTTATTG 57.605 36.000 0.00 0.00 0.00 1.90
7588 7729 5.887598 TCTCCACCAAAGATGATGTTATTGG 59.112 40.000 0.00 0.00 44.75 3.16
7637 7778 4.219725 GGCAAATTTAGTTGGTAAGAGGCA 59.780 41.667 0.00 0.00 0.00 4.75
7660 7801 3.986277 CAAATCCTGCTGTTTCTTTGCT 58.014 40.909 0.00 0.00 0.00 3.91
7661 7802 3.655276 AATCCTGCTGTTTCTTTGCTG 57.345 42.857 0.00 0.00 0.00 4.41
7662 7803 0.670162 TCCTGCTGTTTCTTTGCTGC 59.330 50.000 0.00 0.00 0.00 5.25
7665 7806 2.542597 CTGCTGTTTCTTTGCTGCAAA 58.457 42.857 24.68 24.68 38.66 3.68
7666 7807 2.931325 CTGCTGTTTCTTTGCTGCAAAA 59.069 40.909 25.93 15.28 38.66 2.44
7667 7808 2.672381 TGCTGTTTCTTTGCTGCAAAAC 59.328 40.909 25.93 21.21 36.80 2.43
7668 7809 2.931969 GCTGTTTCTTTGCTGCAAAACT 59.068 40.909 25.93 0.00 32.75 2.66
7669 7810 3.371898 GCTGTTTCTTTGCTGCAAAACTT 59.628 39.130 25.93 0.00 32.75 2.66
7670 7811 4.142838 GCTGTTTCTTTGCTGCAAAACTTT 60.143 37.500 25.93 0.00 32.75 2.66
7671 7812 5.617529 GCTGTTTCTTTGCTGCAAAACTTTT 60.618 36.000 25.93 0.00 32.75 2.27
7672 7813 6.311055 TGTTTCTTTGCTGCAAAACTTTTT 57.689 29.167 25.93 0.00 32.75 1.94
7673 7814 6.369799 TGTTTCTTTGCTGCAAAACTTTTTC 58.630 32.000 25.93 13.93 32.75 2.29
7674 7815 6.204495 TGTTTCTTTGCTGCAAAACTTTTTCT 59.796 30.769 25.93 0.00 32.75 2.52
7675 7816 6.799926 TTCTTTGCTGCAAAACTTTTTCTT 57.200 29.167 25.93 0.00 32.75 2.52
7676 7817 6.407475 TCTTTGCTGCAAAACTTTTTCTTC 57.593 33.333 25.93 0.00 32.75 2.87
7698 7839 1.480683 CCTAGGGGAGGTTCGCTGATA 60.481 57.143 0.00 0.00 40.98 2.15
7707 7848 6.324254 GGGGAGGTTCGCTGATACTATTATAT 59.676 42.308 0.00 0.00 0.00 0.86
7712 7853 6.633634 GGTTCGCTGATACTATTATATCGCTC 59.366 42.308 0.00 0.00 34.75 5.03
7787 7946 3.274095 GGAAGGATCTTCCCTGACTTG 57.726 52.381 14.07 0.00 37.19 3.16
7792 7951 2.305927 GGATCTTCCCTGACTTGTTCCA 59.694 50.000 0.00 0.00 0.00 3.53
7799 7958 1.241165 CTGACTTGTTCCATGCTGCA 58.759 50.000 4.13 4.13 0.00 4.41
7821 7980 5.163550 GCATTTAGGTTGATTAACTGGGACC 60.164 44.000 0.00 0.00 36.99 4.46
7826 7985 1.816074 TGATTAACTGGGACCGTTGC 58.184 50.000 8.23 0.00 0.00 4.17
7876 8035 3.117589 CAGCATGTGAAAAGGCAGC 57.882 52.632 0.00 0.00 0.00 5.25
7877 8036 0.315886 CAGCATGTGAAAAGGCAGCA 59.684 50.000 0.00 0.00 0.00 4.41
7878 8037 1.067142 CAGCATGTGAAAAGGCAGCAT 60.067 47.619 0.00 0.00 0.00 3.79
7879 8038 1.203994 AGCATGTGAAAAGGCAGCATC 59.796 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.867935 CCATTTCATGTACGCATTCAATTTAAA 58.132 29.630 0.00 0.00 31.99 1.52
3 4 7.490725 CCCATTTCATGTACGCATTCAATTTAA 59.509 33.333 0.00 0.00 31.99 1.52
4 5 6.977502 CCCATTTCATGTACGCATTCAATTTA 59.022 34.615 0.00 0.00 31.99 1.40
5 6 5.811613 CCCATTTCATGTACGCATTCAATTT 59.188 36.000 0.00 0.00 31.99 1.82
6 7 5.105392 ACCCATTTCATGTACGCATTCAATT 60.105 36.000 0.00 0.00 31.99 2.32
7 8 4.402155 ACCCATTTCATGTACGCATTCAAT 59.598 37.500 0.00 0.00 31.99 2.57
8 9 3.761218 ACCCATTTCATGTACGCATTCAA 59.239 39.130 0.00 0.00 31.99 2.69
9 10 3.351740 ACCCATTTCATGTACGCATTCA 58.648 40.909 0.00 0.00 31.99 2.57
10 11 3.546020 CGACCCATTTCATGTACGCATTC 60.546 47.826 0.00 0.00 31.99 2.67
11 12 2.354510 CGACCCATTTCATGTACGCATT 59.645 45.455 0.00 0.00 31.99 3.56
12 13 1.939934 CGACCCATTTCATGTACGCAT 59.060 47.619 0.00 0.00 35.32 4.73
13 14 1.364721 CGACCCATTTCATGTACGCA 58.635 50.000 0.00 0.00 0.00 5.24
14 15 0.655733 CCGACCCATTTCATGTACGC 59.344 55.000 0.00 0.00 0.00 4.42
15 16 0.655733 GCCGACCCATTTCATGTACG 59.344 55.000 0.00 0.00 0.00 3.67
16 17 0.655733 CGCCGACCCATTTCATGTAC 59.344 55.000 0.00 0.00 0.00 2.90
17 18 1.092921 GCGCCGACCCATTTCATGTA 61.093 55.000 0.00 0.00 0.00 2.29
18 19 2.406616 GCGCCGACCCATTTCATGT 61.407 57.895 0.00 0.00 0.00 3.21
19 20 2.408835 GCGCCGACCCATTTCATG 59.591 61.111 0.00 0.00 0.00 3.07
20 21 3.202001 CGCGCCGACCCATTTCAT 61.202 61.111 0.00 0.00 0.00 2.57
21 22 4.690719 ACGCGCCGACCCATTTCA 62.691 61.111 5.73 0.00 0.00 2.69
22 23 3.428282 AACGCGCCGACCCATTTC 61.428 61.111 5.73 0.00 0.00 2.17
23 24 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
43 44 3.434319 ATTTGGGTCAGCAGCGCG 61.434 61.111 0.00 0.00 0.00 6.86
44 45 2.180017 CATTTGGGTCAGCAGCGC 59.820 61.111 0.00 0.00 0.00 5.92
45 46 2.144833 TTGCATTTGGGTCAGCAGCG 62.145 55.000 0.00 0.00 38.35 5.18
46 47 0.033781 TTTGCATTTGGGTCAGCAGC 59.966 50.000 0.00 0.00 38.35 5.25
47 48 2.137523 GTTTTGCATTTGGGTCAGCAG 58.862 47.619 0.00 0.00 38.35 4.24
48 49 1.761784 AGTTTTGCATTTGGGTCAGCA 59.238 42.857 0.00 0.00 34.79 4.41
49 50 2.137523 CAGTTTTGCATTTGGGTCAGC 58.862 47.619 0.00 0.00 0.00 4.26
50 51 2.548493 CCCAGTTTTGCATTTGGGTCAG 60.548 50.000 14.10 0.00 44.27 3.51
51 52 1.415659 CCCAGTTTTGCATTTGGGTCA 59.584 47.619 14.10 0.00 44.27 4.02
52 53 2.168326 CCCAGTTTTGCATTTGGGTC 57.832 50.000 14.10 0.00 44.27 4.46
55 56 0.950071 CCGCCCAGTTTTGCATTTGG 60.950 55.000 0.00 0.00 0.00 3.28
56 57 0.033228 TCCGCCCAGTTTTGCATTTG 59.967 50.000 0.00 0.00 0.00 2.32
57 58 0.033366 GTCCGCCCAGTTTTGCATTT 59.967 50.000 0.00 0.00 0.00 2.32
58 59 1.665442 GTCCGCCCAGTTTTGCATT 59.335 52.632 0.00 0.00 0.00 3.56
59 60 2.625823 CGTCCGCCCAGTTTTGCAT 61.626 57.895 0.00 0.00 0.00 3.96
60 61 3.283684 CGTCCGCCCAGTTTTGCA 61.284 61.111 0.00 0.00 0.00 4.08
61 62 4.700365 GCGTCCGCCCAGTTTTGC 62.700 66.667 0.00 0.00 34.56 3.68
87 88 3.047877 GTCTGTTTGGGTCGGCCG 61.048 66.667 22.12 22.12 34.97 6.13
88 89 1.104577 TTTGTCTGTTTGGGTCGGCC 61.105 55.000 0.00 0.00 0.00 6.13
89 90 0.741915 TTTTGTCTGTTTGGGTCGGC 59.258 50.000 0.00 0.00 0.00 5.54
90 91 2.798145 GCTTTTTGTCTGTTTGGGTCGG 60.798 50.000 0.00 0.00 0.00 4.79
91 92 2.459934 GCTTTTTGTCTGTTTGGGTCG 58.540 47.619 0.00 0.00 0.00 4.79
92 93 2.459934 CGCTTTTTGTCTGTTTGGGTC 58.540 47.619 0.00 0.00 0.00 4.46
93 94 1.136110 CCGCTTTTTGTCTGTTTGGGT 59.864 47.619 0.00 0.00 0.00 4.51
94 95 1.407258 TCCGCTTTTTGTCTGTTTGGG 59.593 47.619 0.00 0.00 0.00 4.12
95 96 2.159310 TGTCCGCTTTTTGTCTGTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
96 97 3.143807 TGTCCGCTTTTTGTCTGTTTG 57.856 42.857 0.00 0.00 0.00 2.93
97 98 3.859411 TTGTCCGCTTTTTGTCTGTTT 57.141 38.095 0.00 0.00 0.00 2.83
98 99 3.859411 TTTGTCCGCTTTTTGTCTGTT 57.141 38.095 0.00 0.00 0.00 3.16
99 100 3.705604 CATTTGTCCGCTTTTTGTCTGT 58.294 40.909 0.00 0.00 0.00 3.41
100 101 2.472488 GCATTTGTCCGCTTTTTGTCTG 59.528 45.455 0.00 0.00 0.00 3.51
101 102 2.742774 GCATTTGTCCGCTTTTTGTCT 58.257 42.857 0.00 0.00 0.00 3.41
102 103 1.451651 CGCATTTGTCCGCTTTTTGTC 59.548 47.619 0.00 0.00 0.00 3.18
103 104 1.486439 CGCATTTGTCCGCTTTTTGT 58.514 45.000 0.00 0.00 0.00 2.83
104 105 0.161446 GCGCATTTGTCCGCTTTTTG 59.839 50.000 0.30 0.00 46.14 2.44
105 106 2.516486 GCGCATTTGTCCGCTTTTT 58.484 47.368 0.30 0.00 46.14 1.94
106 107 4.243383 GCGCATTTGTCCGCTTTT 57.757 50.000 0.30 0.00 46.14 2.27
110 111 3.165318 CAACGCGCATTTGTCCGC 61.165 61.111 5.73 0.00 46.17 5.54
111 112 2.501650 CCAACGCGCATTTGTCCG 60.502 61.111 5.73 0.00 0.00 4.79
112 113 2.126502 CCCAACGCGCATTTGTCC 60.127 61.111 5.73 0.00 0.00 4.02
113 114 1.442017 GACCCAACGCGCATTTGTC 60.442 57.895 5.73 3.87 0.00 3.18
114 115 2.642700 GACCCAACGCGCATTTGT 59.357 55.556 5.73 0.00 0.00 2.83
115 116 2.501650 CGACCCAACGCGCATTTG 60.502 61.111 5.73 10.13 0.00 2.32
116 117 3.732892 CCGACCCAACGCGCATTT 61.733 61.111 5.73 0.00 0.00 2.32
128 129 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
129 130 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
132 133 2.180159 TAGAGCAACTCCAACGGGCC 62.180 60.000 0.00 0.00 0.00 5.80
133 134 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
134 135 1.275291 TCTTAGAGCAACTCCAACGGG 59.725 52.381 0.00 0.00 0.00 5.28
135 136 2.737252 GTTCTTAGAGCAACTCCAACGG 59.263 50.000 0.00 0.00 0.00 4.44
136 137 3.654414 AGTTCTTAGAGCAACTCCAACG 58.346 45.455 0.00 0.00 0.00 4.10
137 138 5.057149 TCAAGTTCTTAGAGCAACTCCAAC 58.943 41.667 0.00 0.00 31.38 3.77
138 139 5.290493 TCAAGTTCTTAGAGCAACTCCAA 57.710 39.130 0.00 0.00 31.38 3.53
139 140 4.955811 TCAAGTTCTTAGAGCAACTCCA 57.044 40.909 0.00 0.00 31.38 3.86
140 141 7.100409 ACTTATCAAGTTCTTAGAGCAACTCC 58.900 38.462 0.00 0.00 39.04 3.85
199 200 5.354792 CCCCGGAAAAGATATTTAAACGTGA 59.645 40.000 0.73 0.00 0.00 4.35
300 301 1.194772 GTGGTTGCGTGTCTAGAAAGC 59.805 52.381 0.00 0.90 0.00 3.51
339 340 2.423874 GCCGTTGGGTTTTTGGGG 59.576 61.111 0.00 0.00 34.97 4.96
532 534 3.085533 CCCGTCTCTTTCTCTCTCTTCA 58.914 50.000 0.00 0.00 0.00 3.02
904 912 3.758425 TCAGCCAAAACCTAACCCTAAC 58.242 45.455 0.00 0.00 0.00 2.34
1188 1196 0.179234 TCGGCAACTCAAAGACCACA 59.821 50.000 0.00 0.00 0.00 4.17
1357 1365 3.452264 AGCTTCCCATCCTTTTTATTGCC 59.548 43.478 0.00 0.00 0.00 4.52
2261 2269 6.727231 TGTAGGGTTTCCAGACTGATTTACTA 59.273 38.462 3.32 0.00 34.83 1.82
2703 2714 9.787435 TGGTAACAGTTAAGTCAAGATACAAAT 57.213 29.630 0.00 0.00 46.17 2.32
2793 2805 5.823861 AAGGGGCAAAGTTATCAATTTGT 57.176 34.783 2.21 0.00 38.41 2.83
2857 2869 4.641989 AGGCCGTAAGAATCGTTAAGACTA 59.358 41.667 0.00 0.00 43.02 2.59
2872 2884 0.899720 AGATTCCGAACAGGCCGTAA 59.100 50.000 0.00 0.00 40.77 3.18
2873 2885 0.458669 GAGATTCCGAACAGGCCGTA 59.541 55.000 0.00 0.00 40.77 4.02
2874 2886 1.218316 GAGATTCCGAACAGGCCGT 59.782 57.895 0.00 0.00 40.77 5.68
2875 2887 0.528684 GAGAGATTCCGAACAGGCCG 60.529 60.000 0.00 0.00 40.77 6.13
2876 2888 0.179070 GGAGAGATTCCGAACAGGCC 60.179 60.000 0.00 0.00 40.77 5.19
2877 2889 3.371087 GGAGAGATTCCGAACAGGC 57.629 57.895 0.00 0.00 40.77 4.85
2885 2897 2.077821 GAGCGGACGGGAGAGATTCC 62.078 65.000 0.00 0.00 46.00 3.01
2886 2898 1.360911 GAGCGGACGGGAGAGATTC 59.639 63.158 0.00 0.00 0.00 2.52
2887 2899 2.128507 GGAGCGGACGGGAGAGATT 61.129 63.158 0.00 0.00 0.00 2.40
2888 2900 2.519780 GGAGCGGACGGGAGAGAT 60.520 66.667 0.00 0.00 0.00 2.75
2889 2901 4.043100 TGGAGCGGACGGGAGAGA 62.043 66.667 0.00 0.00 0.00 3.10
2890 2902 3.827898 GTGGAGCGGACGGGAGAG 61.828 72.222 0.00 0.00 0.00 3.20
2891 2903 4.361971 AGTGGAGCGGACGGGAGA 62.362 66.667 0.00 0.00 0.00 3.71
2892 2904 3.827898 GAGTGGAGCGGACGGGAG 61.828 72.222 0.00 0.00 0.00 4.30
2905 2917 4.504916 CTGGAGCTCCGCGGAGTG 62.505 72.222 45.36 29.68 43.70 3.51
2917 2929 0.108424 CTCAAACCGAGCTCCTGGAG 60.108 60.000 19.55 19.55 34.18 3.86
2918 2930 1.975327 CTCAAACCGAGCTCCTGGA 59.025 57.895 13.94 0.00 34.18 3.86
2919 2931 4.606071 CTCAAACCGAGCTCCTGG 57.394 61.111 8.47 7.15 34.18 4.45
2926 2938 2.097038 CGGAGCAGCTCAAACCGAG 61.097 63.158 24.09 2.40 45.31 4.63
2927 2939 2.048222 CGGAGCAGCTCAAACCGA 60.048 61.111 24.09 0.00 45.31 4.69
2929 2941 2.328099 CCACGGAGCAGCTCAAACC 61.328 63.158 24.09 6.26 31.08 3.27
2930 2942 0.884704 TTCCACGGAGCAGCTCAAAC 60.885 55.000 24.09 5.93 31.08 2.93
2931 2943 0.179032 TTTCCACGGAGCAGCTCAAA 60.179 50.000 24.09 12.17 31.08 2.69
2932 2944 0.036732 ATTTCCACGGAGCAGCTCAA 59.963 50.000 24.09 8.81 31.08 3.02
2933 2945 0.901827 TATTTCCACGGAGCAGCTCA 59.098 50.000 24.09 1.52 31.08 4.26
2934 2946 1.936547 CTTATTTCCACGGAGCAGCTC 59.063 52.381 14.69 14.69 0.00 4.09
2935 2947 2.014068 GCTTATTTCCACGGAGCAGCT 61.014 52.381 0.00 0.00 33.68 4.24
2936 2948 0.378610 GCTTATTTCCACGGAGCAGC 59.621 55.000 0.00 0.00 33.68 5.25
2937 2949 1.667724 CAGCTTATTTCCACGGAGCAG 59.332 52.381 0.00 0.00 35.86 4.24
2938 2950 1.737838 CAGCTTATTTCCACGGAGCA 58.262 50.000 0.00 0.00 35.86 4.26
2939 2951 0.378610 GCAGCTTATTTCCACGGAGC 59.621 55.000 0.00 0.00 0.00 4.70
2940 2952 1.667724 CTGCAGCTTATTTCCACGGAG 59.332 52.381 0.00 0.00 0.00 4.63
2941 2953 1.003118 ACTGCAGCTTATTTCCACGGA 59.997 47.619 15.27 0.00 0.00 4.69
2942 2954 1.453155 ACTGCAGCTTATTTCCACGG 58.547 50.000 15.27 0.00 0.00 4.94
2943 2955 3.492313 GAAACTGCAGCTTATTTCCACG 58.508 45.455 15.27 0.00 0.00 4.94
2944 2956 3.838120 GGAAACTGCAGCTTATTTCCAC 58.162 45.455 28.60 12.18 46.26 4.02
2957 2969 1.743252 CCAGAGCGGAGGAAACTGC 60.743 63.158 0.00 0.00 46.81 4.40
2958 2970 1.078848 CCCAGAGCGGAGGAAACTG 60.079 63.158 0.00 0.00 44.43 3.16
2959 2971 1.261238 CTCCCAGAGCGGAGGAAACT 61.261 60.000 0.00 0.00 45.03 2.66
2960 2972 1.219393 CTCCCAGAGCGGAGGAAAC 59.781 63.158 0.00 0.00 45.03 2.78
2961 2973 3.713650 CTCCCAGAGCGGAGGAAA 58.286 61.111 0.00 0.00 45.03 3.13
2970 2982 3.385384 TGGACTGCGCTCCCAGAG 61.385 66.667 9.73 0.00 36.67 3.35
2972 2984 4.463879 CCTGGACTGCGCTCCCAG 62.464 72.222 25.73 25.73 45.28 4.45
2975 2987 4.154347 CTCCCTGGACTGCGCTCC 62.154 72.222 9.73 9.14 0.00 4.70
2976 2988 4.828925 GCTCCCTGGACTGCGCTC 62.829 72.222 9.73 0.00 0.00 5.03
2980 2992 4.154347 CTCCGCTCCCTGGACTGC 62.154 72.222 0.00 0.00 0.00 4.40
2981 2993 2.363018 TCTCCGCTCCCTGGACTG 60.363 66.667 0.00 0.00 0.00 3.51
2982 2994 2.043450 CTCTCCGCTCCCTGGACT 60.043 66.667 0.00 0.00 0.00 3.85
2983 2995 3.151022 CCTCTCCGCTCCCTGGAC 61.151 72.222 0.00 0.00 0.00 4.02
2984 2996 2.931180 TTCCTCTCCGCTCCCTGGA 61.931 63.158 0.00 0.00 0.00 3.86
2985 2997 2.364317 TTCCTCTCCGCTCCCTGG 60.364 66.667 0.00 0.00 0.00 4.45
2986 2998 2.726351 GGTTCCTCTCCGCTCCCTG 61.726 68.421 0.00 0.00 0.00 4.45
2987 2999 2.364448 GGTTCCTCTCCGCTCCCT 60.364 66.667 0.00 0.00 0.00 4.20
2988 3000 3.839432 CGGTTCCTCTCCGCTCCC 61.839 72.222 0.00 0.00 41.48 4.30
2989 3001 2.348888 TTCGGTTCCTCTCCGCTCC 61.349 63.158 0.00 0.00 46.49 4.70
2990 3002 1.153804 GTTCGGTTCCTCTCCGCTC 60.154 63.158 0.00 0.00 46.49 5.03
2991 3003 1.878656 CTGTTCGGTTCCTCTCCGCT 61.879 60.000 0.00 0.00 46.49 5.52
2992 3004 1.446272 CTGTTCGGTTCCTCTCCGC 60.446 63.158 0.00 0.00 46.49 5.54
2994 3006 1.079057 GCCTGTTCGGTTCCTCTCC 60.079 63.158 0.00 0.00 34.25 3.71
2995 3007 1.079057 GGCCTGTTCGGTTCCTCTC 60.079 63.158 0.00 0.00 34.25 3.20
2996 3008 1.128188 AAGGCCTGTTCGGTTCCTCT 61.128 55.000 5.69 0.00 34.25 3.69
2997 3009 0.250770 AAAGGCCTGTTCGGTTCCTC 60.251 55.000 5.69 0.00 34.25 3.71
2998 3010 1.003233 CTAAAGGCCTGTTCGGTTCCT 59.997 52.381 5.69 0.00 34.25 3.36
2999 3011 1.271217 ACTAAAGGCCTGTTCGGTTCC 60.271 52.381 5.69 0.00 34.25 3.62
3000 3012 1.804748 CACTAAAGGCCTGTTCGGTTC 59.195 52.381 5.69 0.00 34.25 3.62
3001 3013 1.142262 ACACTAAAGGCCTGTTCGGTT 59.858 47.619 5.69 0.00 34.25 4.44
3002 3014 0.763035 ACACTAAAGGCCTGTTCGGT 59.237 50.000 5.69 0.00 34.25 4.69
3003 3015 1.270625 TGACACTAAAGGCCTGTTCGG 60.271 52.381 5.69 0.00 0.00 4.30
3004 3016 2.069273 CTGACACTAAAGGCCTGTTCG 58.931 52.381 5.69 0.00 0.00 3.95
3005 3017 1.807142 GCTGACACTAAAGGCCTGTTC 59.193 52.381 5.69 0.00 0.00 3.18
3006 3018 1.142870 TGCTGACACTAAAGGCCTGTT 59.857 47.619 5.69 5.66 0.00 3.16
3007 3019 0.764890 TGCTGACACTAAAGGCCTGT 59.235 50.000 5.69 1.77 0.00 4.00
3008 3020 1.808945 CTTGCTGACACTAAAGGCCTG 59.191 52.381 5.69 0.00 0.00 4.85
3009 3021 1.421646 ACTTGCTGACACTAAAGGCCT 59.578 47.619 0.00 0.00 0.00 5.19
3010 3022 1.897560 ACTTGCTGACACTAAAGGCC 58.102 50.000 0.00 0.00 0.00 5.19
3011 3023 4.695455 TCAATACTTGCTGACACTAAAGGC 59.305 41.667 0.00 0.00 0.00 4.35
3012 3024 6.992063 ATCAATACTTGCTGACACTAAAGG 57.008 37.500 0.00 0.00 0.00 3.11
3013 3025 9.155975 ACTTATCAATACTTGCTGACACTAAAG 57.844 33.333 0.00 0.00 0.00 1.85
3014 3026 9.502091 AACTTATCAATACTTGCTGACACTAAA 57.498 29.630 0.00 0.00 0.00 1.85
3126 3138 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
3127 3139 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
3128 3140 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
3129 3141 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
3130 3142 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3131 3143 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3132 3144 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
3133 3145 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3134 3146 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
3135 3147 7.672122 AAGTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
3136 3148 7.486407 AAAGTACTCCCTCCGTAAAGAAATA 57.514 36.000 0.00 0.00 0.00 1.40
3137 3149 6.370186 AAAGTACTCCCTCCGTAAAGAAAT 57.630 37.500 0.00 0.00 0.00 2.17
3138 3150 5.813513 AAAGTACTCCCTCCGTAAAGAAA 57.186 39.130 0.00 0.00 0.00 2.52
3139 3151 6.916360 TTAAAGTACTCCCTCCGTAAAGAA 57.084 37.500 0.00 0.00 0.00 2.52
3140 3152 7.178983 TGAATTAAAGTACTCCCTCCGTAAAGA 59.821 37.037 0.00 0.00 0.00 2.52
3142 3154 7.243604 TGAATTAAAGTACTCCCTCCGTAAA 57.756 36.000 0.00 0.00 0.00 2.01
3143 3155 6.855763 TGAATTAAAGTACTCCCTCCGTAA 57.144 37.500 0.00 0.00 0.00 3.18
3294 3393 4.813750 AATTTCCCATTCTTGAAGCTGG 57.186 40.909 6.64 6.64 0.00 4.85
3450 3549 4.949121 ACTAGAATCTGGGGTACAACTCT 58.051 43.478 0.00 0.00 0.00 3.24
3482 3581 4.202182 GGGTAAATCTACGACATGCCACTA 60.202 45.833 0.00 0.00 0.00 2.74
3485 3584 2.769663 AGGGTAAATCTACGACATGCCA 59.230 45.455 0.00 0.00 0.00 4.92
3634 3734 6.728089 TTTTGCTGCCATATGGATTCAATA 57.272 33.333 26.47 15.19 37.39 1.90
3934 4039 6.883217 TGTACTAAGTGCTACTAGCTGTTAGT 59.117 38.462 24.32 24.32 44.68 2.24
4184 4289 6.653020 ACACTGCCATATTATGTCAAAGAGA 58.347 36.000 3.10 0.00 0.00 3.10
4411 4516 6.775629 GGGTTGTCCAATATAGCAGGAAAATA 59.224 38.462 0.00 0.00 31.66 1.40
4437 4542 4.478699 TGAGAACGGTTGTAAGATACACG 58.521 43.478 0.00 0.00 38.63 4.49
4640 4747 6.766467 AGAAATTTATGGACATCGGGTAGTTC 59.234 38.462 0.00 0.00 0.00 3.01
5064 5172 3.858503 GCAAGAGCTGGTTTGGCTTAAAG 60.859 47.826 0.00 0.00 40.40 1.85
5177 5286 8.463930 AAACTTTGACTGAGTTTAATCCATCA 57.536 30.769 0.75 0.00 43.46 3.07
5248 5357 7.093068 TGCTCAGATTGTCTATAGTTTGGGTTA 60.093 37.037 0.00 0.00 0.00 2.85
5544 5653 2.943036 ACACAGTCCGGGTTGTAATT 57.057 45.000 0.00 0.00 0.00 1.40
5545 5654 2.105134 TGAACACAGTCCGGGTTGTAAT 59.895 45.455 0.00 0.00 0.00 1.89
5555 5664 1.541588 GGCTCCATTTGAACACAGTCC 59.458 52.381 0.00 0.00 0.00 3.85
5770 5879 2.278245 TGGGTCTCCACTGAATTCCAT 58.722 47.619 2.27 0.00 38.32 3.41
5782 5891 4.003648 CACAGTGATAAGTTTGGGTCTCC 58.996 47.826 0.00 0.00 0.00 3.71
5785 5894 3.412386 AGCACAGTGATAAGTTTGGGTC 58.588 45.455 4.15 0.00 0.00 4.46
5801 5910 2.159393 GCAAAGCCAATCGATAAGCACA 60.159 45.455 18.60 0.00 0.00 4.57
5968 6077 2.671396 AGACCGCATAAAAGTACAAGCG 59.329 45.455 0.00 0.00 44.24 4.68
6439 6550 3.128188 CTGCAGCAGCCTCAGCAG 61.128 66.667 10.14 11.01 46.98 4.24
6557 6668 5.521906 TCTGCACTTCAGAGTATGGATAC 57.478 43.478 0.00 0.00 46.34 2.24
6904 7015 9.139734 AGATTATCACTGAAAATGCACCATAAT 57.860 29.630 0.00 0.00 0.00 1.28
7139 7250 5.122707 TCATGGCTAACAATGAACCCATA 57.877 39.130 0.00 0.00 32.20 2.74
7239 7351 2.683475 CTCAACCCCACCCATCCC 59.317 66.667 0.00 0.00 0.00 3.85
7491 7626 5.195940 TCAGCAGCCAATTAAAGCTTATCT 58.804 37.500 0.00 0.00 37.18 1.98
7608 7749 7.565680 TCTTACCAACTAAATTTGCCCAAAAA 58.434 30.769 0.00 0.00 33.56 1.94
7609 7750 7.125792 TCTTACCAACTAAATTTGCCCAAAA 57.874 32.000 0.00 0.00 33.56 2.44
7610 7751 6.239458 CCTCTTACCAACTAAATTTGCCCAAA 60.239 38.462 0.00 0.00 34.46 3.28
7611 7752 5.245075 CCTCTTACCAACTAAATTTGCCCAA 59.755 40.000 0.00 0.00 0.00 4.12
7612 7753 4.770010 CCTCTTACCAACTAAATTTGCCCA 59.230 41.667 0.00 0.00 0.00 5.36
7613 7754 4.381612 GCCTCTTACCAACTAAATTTGCCC 60.382 45.833 0.00 0.00 0.00 5.36
7614 7755 4.219725 TGCCTCTTACCAACTAAATTTGCC 59.780 41.667 0.00 0.00 0.00 4.52
7615 7756 5.385509 TGCCTCTTACCAACTAAATTTGC 57.614 39.130 0.00 0.00 0.00 3.68
7616 7757 5.048083 TGCTGCCTCTTACCAACTAAATTTG 60.048 40.000 0.00 0.00 0.00 2.32
7617 7758 5.076873 TGCTGCCTCTTACCAACTAAATTT 58.923 37.500 0.00 0.00 0.00 1.82
7618 7759 4.662278 TGCTGCCTCTTACCAACTAAATT 58.338 39.130 0.00 0.00 0.00 1.82
7619 7760 4.301072 TGCTGCCTCTTACCAACTAAAT 57.699 40.909 0.00 0.00 0.00 1.40
7620 7761 3.780804 TGCTGCCTCTTACCAACTAAA 57.219 42.857 0.00 0.00 0.00 1.85
7621 7762 3.780804 TTGCTGCCTCTTACCAACTAA 57.219 42.857 0.00 0.00 0.00 2.24
7622 7763 3.780804 TTTGCTGCCTCTTACCAACTA 57.219 42.857 0.00 0.00 0.00 2.24
7623 7764 2.656947 TTTGCTGCCTCTTACCAACT 57.343 45.000 0.00 0.00 0.00 3.16
7654 7795 6.413018 AGAAGAAAAAGTTTTGCAGCAAAG 57.587 33.333 19.74 0.00 34.72 2.77
7658 7799 4.686972 AGGAGAAGAAAAAGTTTTGCAGC 58.313 39.130 9.05 0.30 0.00 5.25
7659 7800 6.442112 CCTAGGAGAAGAAAAAGTTTTGCAG 58.558 40.000 1.05 0.00 0.00 4.41
7660 7801 5.301805 CCCTAGGAGAAGAAAAAGTTTTGCA 59.698 40.000 11.48 0.00 0.00 4.08
7661 7802 5.279006 CCCCTAGGAGAAGAAAAAGTTTTGC 60.279 44.000 11.48 0.00 33.47 3.68
7662 7803 6.068670 TCCCCTAGGAGAAGAAAAAGTTTTG 58.931 40.000 11.48 0.00 37.19 2.44
7687 7828 6.496571 AGCGATATAATAGTATCAGCGAACC 58.503 40.000 0.00 0.00 36.57 3.62
7698 7839 6.074544 GCCTATTCCGAGCGATATAATAGT 57.925 41.667 7.79 0.00 31.25 2.12
7712 7853 1.338337 AGATCACTGACGCCTATTCCG 59.662 52.381 0.00 0.00 0.00 4.30
7787 7946 3.193267 TCAACCTAAATGCAGCATGGAAC 59.807 43.478 15.55 0.00 42.43 3.62
7792 7951 6.406177 CCAGTTAATCAACCTAAATGCAGCAT 60.406 38.462 0.52 0.52 35.05 3.79
7799 7958 5.190677 CGGTCCCAGTTAATCAACCTAAAT 58.809 41.667 0.00 0.00 35.05 1.40
7850 8009 2.655090 TTTCACATGCTGTTCTGGGA 57.345 45.000 0.00 0.00 0.00 4.37
7852 8011 2.608752 GCCTTTTCACATGCTGTTCTGG 60.609 50.000 0.00 0.00 0.00 3.86
7867 8026 2.592102 TCTCCTTGATGCTGCCTTTT 57.408 45.000 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.