Multiple sequence alignment - TraesCS7D01G308900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G308900 | chr7D | 100.000 | 5009 | 0 | 0 | 1 | 5009 | 391579317 | 391584325 | 0.000000e+00 | 9250.0 |
1 | TraesCS7D01G308900 | chr7D | 95.000 | 200 | 10 | 0 | 4810 | 5009 | 182809714 | 182809515 | 1.050000e-81 | 315.0 |
2 | TraesCS7D01G308900 | chr7D | 100.000 | 30 | 0 | 0 | 4522 | 4551 | 60438317 | 60438346 | 7.010000e-04 | 56.5 |
3 | TraesCS7D01G308900 | chr7B | 92.736 | 3703 | 187 | 41 | 131 | 3783 | 388168652 | 388172322 | 0.000000e+00 | 5273.0 |
4 | TraesCS7D01G308900 | chr7B | 92.094 | 721 | 33 | 8 | 3782 | 4481 | 388172416 | 388173133 | 0.000000e+00 | 994.0 |
5 | TraesCS7D01G308900 | chr7B | 92.565 | 269 | 15 | 2 | 4545 | 4813 | 388173134 | 388173397 | 1.020000e-101 | 381.0 |
6 | TraesCS7D01G308900 | chr7B | 92.593 | 135 | 7 | 1 | 1 | 132 | 388168384 | 388168518 | 1.840000e-44 | 191.0 |
7 | TraesCS7D01G308900 | chr7A | 95.206 | 2065 | 64 | 16 | 1 | 2046 | 443390523 | 443392571 | 0.000000e+00 | 3232.0 |
8 | TraesCS7D01G308900 | chr7A | 96.402 | 1751 | 61 | 1 | 1973 | 3723 | 443392570 | 443394318 | 0.000000e+00 | 2883.0 |
9 | TraesCS7D01G308900 | chr7A | 90.464 | 797 | 39 | 17 | 3812 | 4572 | 443394320 | 443395115 | 0.000000e+00 | 1016.0 |
10 | TraesCS7D01G308900 | chr7A | 94.872 | 234 | 12 | 0 | 4580 | 4813 | 443395349 | 443395582 | 2.850000e-97 | 366.0 |
11 | TraesCS7D01G308900 | chr7A | 91.080 | 213 | 17 | 2 | 4799 | 5009 | 595211369 | 595211581 | 2.280000e-73 | 287.0 |
12 | TraesCS7D01G308900 | chr1D | 95.500 | 200 | 6 | 1 | 4810 | 5009 | 303303448 | 303303252 | 2.910000e-82 | 316.0 |
13 | TraesCS7D01G308900 | chr1D | 95.337 | 193 | 9 | 0 | 4817 | 5009 | 50895755 | 50895563 | 1.750000e-79 | 307.0 |
14 | TraesCS7D01G308900 | chr1D | 87.671 | 73 | 9 | 0 | 4382 | 4454 | 19263740 | 19263668 | 8.930000e-13 | 86.1 |
15 | TraesCS7D01G308900 | chr1D | 100.000 | 29 | 0 | 0 | 4522 | 4550 | 360443062 | 360443034 | 3.000000e-03 | 54.7 |
16 | TraesCS7D01G308900 | chr6D | 94.000 | 200 | 12 | 0 | 4810 | 5009 | 460280321 | 460280122 | 2.270000e-78 | 303.0 |
17 | TraesCS7D01G308900 | chr6D | 93.782 | 193 | 12 | 0 | 4817 | 5009 | 120645886 | 120645694 | 1.760000e-74 | 291.0 |
18 | TraesCS7D01G308900 | chr3A | 95.288 | 191 | 9 | 0 | 4817 | 5007 | 490628177 | 490628367 | 2.270000e-78 | 303.0 |
19 | TraesCS7D01G308900 | chr2B | 92.537 | 201 | 15 | 0 | 4809 | 5009 | 90783296 | 90783496 | 6.340000e-74 | 289.0 |
20 | TraesCS7D01G308900 | chr2B | 94.286 | 35 | 2 | 0 | 4521 | 4555 | 5552931 | 5552965 | 3.000000e-03 | 54.7 |
21 | TraesCS7D01G308900 | chr2A | 92.500 | 200 | 14 | 1 | 4810 | 5009 | 653368163 | 653367965 | 8.210000e-73 | 285.0 |
22 | TraesCS7D01G308900 | chr2A | 86.957 | 69 | 9 | 0 | 4382 | 4450 | 386294353 | 386294421 | 1.500000e-10 | 78.7 |
23 | TraesCS7D01G308900 | chr2A | 94.444 | 36 | 2 | 0 | 4479 | 4514 | 767318783 | 767318818 | 7.010000e-04 | 56.5 |
24 | TraesCS7D01G308900 | chr2A | 100.000 | 29 | 0 | 0 | 4522 | 4550 | 337716732 | 337716704 | 3.000000e-03 | 54.7 |
25 | TraesCS7D01G308900 | chr1B | 89.706 | 68 | 6 | 1 | 4743 | 4810 | 457468498 | 457468564 | 8.930000e-13 | 86.1 |
26 | TraesCS7D01G308900 | chr1B | 100.000 | 29 | 0 | 0 | 4522 | 4550 | 15143665 | 15143637 | 3.000000e-03 | 54.7 |
27 | TraesCS7D01G308900 | chr1A | 86.301 | 73 | 10 | 0 | 4382 | 4454 | 21039722 | 21039650 | 4.160000e-11 | 80.5 |
28 | TraesCS7D01G308900 | chr1A | 94.286 | 35 | 2 | 0 | 4382 | 4416 | 299633852 | 299633818 | 3.000000e-03 | 54.7 |
29 | TraesCS7D01G308900 | chr4D | 92.857 | 42 | 3 | 0 | 4382 | 4423 | 301756309 | 301756350 | 1.510000e-05 | 62.1 |
30 | TraesCS7D01G308900 | chr4D | 94.286 | 35 | 1 | 1 | 4521 | 4554 | 4484052 | 4484086 | 9.000000e-03 | 52.8 |
31 | TraesCS7D01G308900 | chr6A | 82.353 | 68 | 10 | 2 | 4382 | 4448 | 464514283 | 464514349 | 1.950000e-04 | 58.4 |
32 | TraesCS7D01G308900 | chr6B | 100.000 | 30 | 0 | 0 | 4522 | 4551 | 672924273 | 672924244 | 7.010000e-04 | 56.5 |
33 | TraesCS7D01G308900 | chr4B | 90.476 | 42 | 4 | 0 | 4382 | 4423 | 376157715 | 376157756 | 7.010000e-04 | 56.5 |
34 | TraesCS7D01G308900 | chrUn | 96.774 | 31 | 1 | 0 | 4521 | 4551 | 62344952 | 62344922 | 9.000000e-03 | 52.8 |
35 | TraesCS7D01G308900 | chrUn | 96.774 | 31 | 1 | 0 | 4521 | 4551 | 62406292 | 62406262 | 9.000000e-03 | 52.8 |
36 | TraesCS7D01G308900 | chrUn | 91.892 | 37 | 3 | 0 | 4382 | 4418 | 249263442 | 249263406 | 9.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G308900 | chr7D | 391579317 | 391584325 | 5008 | False | 9250.00 | 9250 | 100.000 | 1 | 5009 | 1 | chr7D.!!$F2 | 5008 |
1 | TraesCS7D01G308900 | chr7B | 388168384 | 388173397 | 5013 | False | 1709.75 | 5273 | 92.497 | 1 | 4813 | 4 | chr7B.!!$F1 | 4812 |
2 | TraesCS7D01G308900 | chr7A | 443390523 | 443395582 | 5059 | False | 1874.25 | 3232 | 94.236 | 1 | 4813 | 4 | chr7A.!!$F2 | 4812 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
983 | 1143 | 0.736325 | CTCTGAAACCCTACGCACCG | 60.736 | 60.0 | 0.0 | 0.0 | 0.00 | 4.94 | F |
1273 | 1434 | 0.322456 | ATGTGGGGTGGTCGTGAATG | 60.322 | 55.0 | 0.0 | 0.0 | 0.00 | 2.67 | F |
2299 | 2556 | 0.940126 | CTATCCCACAAGCGTGCATC | 59.060 | 55.0 | 0.0 | 0.0 | 42.17 | 3.91 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2299 | 2556 | 0.321653 | AGGCTGAACTAAACAGGGCG | 60.322 | 55.000 | 0.00 | 0.0 | 36.09 | 6.13 | R |
2394 | 2651 | 3.490348 | GCCTGGTGCATATATCCTTGTT | 58.510 | 45.455 | 0.00 | 0.0 | 40.77 | 2.83 | R |
4218 | 4579 | 0.040958 | CGCCTTTTGCACAGTGAGTC | 60.041 | 55.000 | 4.15 | 0.0 | 41.33 | 3.36 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
82 | 83 | 4.541705 | TCAAACTCTGAAACCCATCCAAA | 58.458 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
351 | 490 | 2.570442 | AAACGCAAAAATCACACCGT | 57.430 | 40.000 | 0.00 | 0.00 | 0.00 | 4.83 |
387 | 526 | 1.472026 | CGGTAATTCGACACCCCGATT | 60.472 | 52.381 | 6.89 | 0.00 | 38.45 | 3.34 |
434 | 574 | 1.527370 | GCTCCCAGCGAAACCCTAT | 59.473 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
440 | 580 | 1.389555 | CAGCGAAACCCTATTTCCCC | 58.610 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
605 | 751 | 1.733402 | CGCCTGCCTCTCCTAGTCTG | 61.733 | 65.000 | 0.00 | 0.00 | 0.00 | 3.51 |
606 | 752 | 2.026945 | GCCTGCCTCTCCTAGTCTGC | 62.027 | 65.000 | 0.00 | 0.00 | 0.00 | 4.26 |
607 | 753 | 1.732917 | CTGCCTCTCCTAGTCTGCG | 59.267 | 63.158 | 0.00 | 0.00 | 0.00 | 5.18 |
609 | 755 | 3.124686 | CCTCTCCTAGTCTGCGCC | 58.875 | 66.667 | 4.18 | 0.00 | 0.00 | 6.53 |
744 | 904 | 3.122971 | GGCTAACCCGCAACCGTC | 61.123 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
745 | 905 | 2.357760 | GCTAACCCGCAACCGTCA | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
746 | 906 | 1.962306 | GCTAACCCGCAACCGTCAA | 60.962 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
840 | 1000 | 2.644555 | AATCCATCCCGGCTCGTTCG | 62.645 | 60.000 | 0.00 | 0.00 | 33.14 | 3.95 |
983 | 1143 | 0.736325 | CTCTGAAACCCTACGCACCG | 60.736 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
994 | 1154 | 2.457743 | TACGCACCGAAACCAGCCAT | 62.458 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1136 | 1296 | 0.460311 | CCTCGGTCTCTGCGGTAATT | 59.540 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1160 | 1321 | 0.602905 | ACCACCTCGCCTTTTTCTCG | 60.603 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1164 | 1325 | 1.337541 | ACCTCGCCTTTTTCTCGGTAC | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
1168 | 1329 | 3.469739 | TCGCCTTTTTCTCGGTACTTTT | 58.530 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
1257 | 1418 | 3.148279 | GCGTCCCCGAGGAGATGT | 61.148 | 66.667 | 0.00 | 0.00 | 45.21 | 3.06 |
1265 | 1426 | 1.990060 | CGAGGAGATGTGGGGTGGT | 60.990 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
1273 | 1434 | 0.322456 | ATGTGGGGTGGTCGTGAATG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1274 | 1435 | 2.033448 | TGGGGTGGTCGTGAATGC | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 3.56 |
1275 | 1436 | 3.124921 | GGGGTGGTCGTGAATGCG | 61.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.73 |
1305 | 1466 | 1.159664 | AGGAGCCCCTGACTTCAGT | 59.840 | 57.895 | 5.53 | 0.00 | 42.42 | 3.41 |
1369 | 1530 | 9.149225 | GCTACATGACCAGATTTCTATCTAATG | 57.851 | 37.037 | 0.00 | 0.00 | 39.11 | 1.90 |
1370 | 1531 | 7.976135 | ACATGACCAGATTTCTATCTAATGC | 57.024 | 36.000 | 0.00 | 0.00 | 39.11 | 3.56 |
1378 | 1539 | 5.762218 | AGATTTCTATCTAATGCTGTGCACC | 59.238 | 40.000 | 15.69 | 0.00 | 39.36 | 5.01 |
1380 | 1541 | 5.869649 | TTCTATCTAATGCTGTGCACCTA | 57.130 | 39.130 | 15.69 | 0.24 | 43.04 | 3.08 |
1449 | 1610 | 3.744530 | GCATTACCCCACTCGATAGCTTT | 60.745 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1574 | 1735 | 1.755959 | TGTGTGATTTTGGCTTGCACT | 59.244 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
1612 | 1773 | 3.245087 | TGTGGTGCACTAATAATGGTGGT | 60.245 | 43.478 | 17.98 | 0.00 | 38.39 | 4.16 |
1631 | 1792 | 2.620585 | GGTGCTATTGGGATTTCAGCTC | 59.379 | 50.000 | 0.00 | 0.00 | 33.38 | 4.09 |
1640 | 1801 | 2.350522 | GGATTTCAGCTCGAGAAAGCA | 58.649 | 47.619 | 18.75 | 0.00 | 45.00 | 3.91 |
1667 | 1828 | 1.208776 | ACTGTGATGATGCAGCAGCTA | 59.791 | 47.619 | 21.91 | 9.49 | 42.74 | 3.32 |
1732 | 1893 | 2.609491 | GCTGTTATGGCATGCATGGATG | 60.609 | 50.000 | 27.34 | 21.79 | 0.00 | 3.51 |
1753 | 1914 | 7.071447 | TGGATGCTGATTTTTCATAATTGGGAT | 59.929 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1773 | 1934 | 7.458397 | TGGGATACTCACAAGTTACAAGATTT | 58.542 | 34.615 | 0.00 | 0.00 | 36.92 | 2.17 |
1801 | 1963 | 8.908678 | CATTGCATTTGTTACATATGTAGATGC | 58.091 | 33.333 | 27.31 | 27.31 | 36.32 | 3.91 |
1805 | 1967 | 9.520204 | GCATTTGTTACATATGTAGATGCTTTT | 57.480 | 29.630 | 27.06 | 9.30 | 34.88 | 2.27 |
1885 | 2048 | 1.873698 | TTGTCAGTCAAAGGTACGGC | 58.126 | 50.000 | 0.00 | 0.00 | 32.64 | 5.68 |
1950 | 2134 | 7.989741 | CAGATGGATAGACTTGTAGGTTGAAAT | 59.010 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1981 | 2237 | 5.127356 | AGTCCTTTCCTACTAATGTTCTCCG | 59.873 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2151 | 2407 | 7.535139 | TCCTTGTTCCATCGACATTATTTTTC | 58.465 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
2175 | 2432 | 7.432869 | TCTGGGTTCACTTAATTTTTGTGATG | 58.567 | 34.615 | 8.11 | 0.00 | 39.92 | 3.07 |
2299 | 2556 | 0.940126 | CTATCCCACAAGCGTGCATC | 59.060 | 55.000 | 0.00 | 0.00 | 42.17 | 3.91 |
2324 | 2581 | 3.008485 | CCTGTTTAGTTCAGCCTTCTCCT | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
2413 | 2671 | 7.566760 | TTTGTAACAAGGATATATGCACCAG | 57.433 | 36.000 | 7.02 | 0.00 | 0.00 | 4.00 |
2539 | 2797 | 6.324042 | CGCATAAATATGGCAATATCAGCAA | 58.676 | 36.000 | 0.00 | 0.00 | 34.32 | 3.91 |
2622 | 2880 | 9.772973 | TTTATGCTTTTCAGTGTCTACTTTCTA | 57.227 | 29.630 | 0.00 | 0.00 | 34.07 | 2.10 |
2745 | 3004 | 2.471103 | GCGTGCATTTGAAATTTCTGCG | 60.471 | 45.455 | 18.64 | 9.69 | 35.63 | 5.18 |
2886 | 3145 | 5.522097 | GGGTAATGTTTCCATTAAAATGCCG | 59.478 | 40.000 | 0.00 | 0.00 | 43.36 | 5.69 |
2907 | 3166 | 7.857569 | TGCCGTTATTAAGTATTGAATGCTAC | 58.142 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
2945 | 3204 | 6.538742 | TGAATCTCTTCAACGAAGTCTTTGTT | 59.461 | 34.615 | 11.82 | 11.82 | 45.00 | 2.83 |
3010 | 3269 | 8.977505 | CAAACATATCAAAAACTAAGGTGTTGG | 58.022 | 33.333 | 0.00 | 0.00 | 0.00 | 3.77 |
3032 | 3291 | 4.458989 | GGTATTTTCCTCATCTTGTGTGCA | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
3247 | 3506 | 3.239449 | TCAGAAGCTGAGGGTTACTGAA | 58.761 | 45.455 | 0.00 | 0.00 | 35.39 | 3.02 |
3316 | 3575 | 9.360093 | CACTTACTAGCCTATAATTAGCACATC | 57.640 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
3574 | 3833 | 6.183360 | GGTTTTCCTGCTGCAATGTTATCTAT | 60.183 | 38.462 | 3.02 | 0.00 | 36.94 | 1.98 |
3586 | 3845 | 6.564125 | GCAATGTTATCTATGACCGCTTGTAC | 60.564 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
3774 | 4033 | 1.667724 | GTGTGTGTAGATGCATCAGCC | 59.332 | 52.381 | 27.81 | 15.01 | 41.13 | 4.85 |
3790 | 4144 | 5.242393 | GCATCAGCCATATTGTAGAACCATT | 59.758 | 40.000 | 0.00 | 0.00 | 33.58 | 3.16 |
3829 | 4183 | 3.750371 | CACACTTGTTCATGGAGGGTAA | 58.250 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
3843 | 4197 | 3.000727 | GAGGGTAACGTTCCATGTCAAG | 58.999 | 50.000 | 2.82 | 0.00 | 37.60 | 3.02 |
3896 | 4257 | 2.688446 | CCTTGCTGCATCACATCATCTT | 59.312 | 45.455 | 1.84 | 0.00 | 0.00 | 2.40 |
3915 | 4276 | 6.758416 | TCATCTTATGCTCACTTGTGATGTAC | 59.242 | 38.462 | 3.79 | 0.00 | 33.82 | 2.90 |
3960 | 4321 | 5.666969 | TGTTTCAGGAGTTGATTGTTACG | 57.333 | 39.130 | 0.00 | 0.00 | 35.27 | 3.18 |
4167 | 4528 | 7.618502 | TTTGAAATATACGTACTTGTGCCAT | 57.381 | 32.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4194 | 4555 | 2.678336 | GAGGTAGAGAATTTTGGGTGCG | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
4218 | 4579 | 3.803778 | GCTTCTGTTTGAACAATTGTGGG | 59.196 | 43.478 | 12.82 | 0.00 | 38.66 | 4.61 |
4376 | 4738 | 1.135257 | TGTTTTGGTGTTGTCGGCAAG | 60.135 | 47.619 | 0.75 | 0.00 | 34.94 | 4.01 |
4484 | 4867 | 4.508124 | GGCTTGTCATAATTGAGTACTCCG | 59.492 | 45.833 | 20.11 | 2.33 | 30.85 | 4.63 |
4506 | 4890 | 7.276658 | TCCGTTTGTTCCATAATATAAGAGCA | 58.723 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
4508 | 4892 | 8.567948 | CCGTTTGTTCCATAATATAAGAGCATT | 58.432 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
4521 | 4905 | 9.678260 | AATATAAGAGCATTTTTGAGACAGAGT | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
4522 | 4906 | 5.938438 | AAGAGCATTTTTGAGACAGAGTC | 57.062 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
4523 | 4907 | 5.226194 | AGAGCATTTTTGAGACAGAGTCT | 57.774 | 39.130 | 0.00 | 0.00 | 46.42 | 3.24 |
4524 | 4908 | 5.619220 | AGAGCATTTTTGAGACAGAGTCTT | 58.381 | 37.500 | 0.70 | 0.00 | 43.53 | 3.01 |
4525 | 4909 | 6.763355 | AGAGCATTTTTGAGACAGAGTCTTA | 58.237 | 36.000 | 0.70 | 0.00 | 43.53 | 2.10 |
4527 | 4911 | 8.535335 | AGAGCATTTTTGAGACAGAGTCTTATA | 58.465 | 33.333 | 0.70 | 0.00 | 43.53 | 0.98 |
4537 | 4921 | 9.853177 | TGAGACAGAGTCTTATATTATGAGACA | 57.147 | 33.333 | 23.13 | 4.87 | 45.35 | 3.41 |
4558 | 4947 | 2.067197 | GGGAGTACCTGCTTGTGGT | 58.933 | 57.895 | 0.00 | 0.00 | 41.28 | 4.16 |
4604 | 5219 | 4.732938 | GCAAAGCAGCACATCTCTAAATCC | 60.733 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
4685 | 5300 | 6.309712 | AGATAAATCAATCAATGTCCAGCG | 57.690 | 37.500 | 0.00 | 0.00 | 0.00 | 5.18 |
4724 | 5339 | 1.728971 | CAGTTTTCCAGCGCTCACTAG | 59.271 | 52.381 | 7.13 | 0.00 | 0.00 | 2.57 |
4755 | 5370 | 7.979537 | AGTTCATTCTTAACCAAGGTGTTTTTC | 59.020 | 33.333 | 0.00 | 0.00 | 32.22 | 2.29 |
4813 | 5428 | 4.437930 | GCTTAGTGCAATGACAGCTTAAGG | 60.438 | 45.833 | 4.29 | 0.00 | 42.31 | 2.69 |
4814 | 5429 | 3.146104 | AGTGCAATGACAGCTTAAGGT | 57.854 | 42.857 | 0.12 | 0.12 | 0.00 | 3.50 |
4815 | 5430 | 4.286297 | AGTGCAATGACAGCTTAAGGTA | 57.714 | 40.909 | 6.90 | 0.00 | 0.00 | 3.08 |
4816 | 5431 | 4.003648 | AGTGCAATGACAGCTTAAGGTAC | 58.996 | 43.478 | 6.90 | 5.57 | 0.00 | 3.34 |
4818 | 5433 | 4.002982 | TGCAATGACAGCTTAAGGTACTG | 58.997 | 43.478 | 6.90 | 6.93 | 40.86 | 2.74 |
4819 | 5434 | 4.003648 | GCAATGACAGCTTAAGGTACTGT | 58.996 | 43.478 | 6.90 | 10.17 | 46.92 | 3.55 |
4820 | 5435 | 4.455877 | GCAATGACAGCTTAAGGTACTGTT | 59.544 | 41.667 | 6.90 | 0.00 | 44.40 | 3.16 |
4821 | 5436 | 5.048713 | GCAATGACAGCTTAAGGTACTGTTT | 60.049 | 40.000 | 6.90 | 0.67 | 44.40 | 2.83 |
4822 | 5437 | 6.373779 | CAATGACAGCTTAAGGTACTGTTTG | 58.626 | 40.000 | 6.90 | 8.74 | 44.40 | 2.93 |
4823 | 5438 | 4.385825 | TGACAGCTTAAGGTACTGTTTGG | 58.614 | 43.478 | 6.90 | 0.00 | 44.40 | 3.28 |
4824 | 5439 | 4.141574 | TGACAGCTTAAGGTACTGTTTGGT | 60.142 | 41.667 | 6.90 | 0.00 | 44.40 | 3.67 |
4825 | 5440 | 4.788679 | ACAGCTTAAGGTACTGTTTGGTT | 58.211 | 39.130 | 6.90 | 0.00 | 41.78 | 3.67 |
4826 | 5441 | 4.820173 | ACAGCTTAAGGTACTGTTTGGTTC | 59.180 | 41.667 | 6.90 | 0.00 | 41.78 | 3.62 |
4827 | 5442 | 4.819630 | CAGCTTAAGGTACTGTTTGGTTCA | 59.180 | 41.667 | 6.90 | 0.00 | 40.86 | 3.18 |
4828 | 5443 | 5.473504 | CAGCTTAAGGTACTGTTTGGTTCAT | 59.526 | 40.000 | 6.90 | 0.00 | 40.86 | 2.57 |
4829 | 5444 | 6.653320 | CAGCTTAAGGTACTGTTTGGTTCATA | 59.347 | 38.462 | 6.90 | 0.00 | 40.86 | 2.15 |
4830 | 5445 | 7.174253 | CAGCTTAAGGTACTGTTTGGTTCATAA | 59.826 | 37.037 | 6.90 | 0.00 | 40.86 | 1.90 |
4831 | 5446 | 7.390718 | AGCTTAAGGTACTGTTTGGTTCATAAG | 59.609 | 37.037 | 5.12 | 0.00 | 40.86 | 1.73 |
4832 | 5447 | 7.174426 | GCTTAAGGTACTGTTTGGTTCATAAGT | 59.826 | 37.037 | 4.29 | 0.00 | 40.86 | 2.24 |
4833 | 5448 | 8.611654 | TTAAGGTACTGTTTGGTTCATAAGTC | 57.388 | 34.615 | 0.00 | 0.00 | 40.86 | 3.01 |
4834 | 5449 | 6.435292 | AGGTACTGTTTGGTTCATAAGTCT | 57.565 | 37.500 | 0.00 | 0.00 | 37.18 | 3.24 |
4835 | 5450 | 6.838382 | AGGTACTGTTTGGTTCATAAGTCTT | 58.162 | 36.000 | 0.00 | 0.00 | 37.18 | 3.01 |
4836 | 5451 | 7.287810 | AGGTACTGTTTGGTTCATAAGTCTTT | 58.712 | 34.615 | 0.00 | 0.00 | 37.18 | 2.52 |
4837 | 5452 | 7.228706 | AGGTACTGTTTGGTTCATAAGTCTTTG | 59.771 | 37.037 | 0.00 | 0.00 | 37.18 | 2.77 |
4838 | 5453 | 6.391227 | ACTGTTTGGTTCATAAGTCTTTGG | 57.609 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
4839 | 5454 | 6.126409 | ACTGTTTGGTTCATAAGTCTTTGGA | 58.874 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4840 | 5455 | 6.039382 | ACTGTTTGGTTCATAAGTCTTTGGAC | 59.961 | 38.462 | 0.00 | 0.00 | 42.41 | 4.02 |
4868 | 5483 | 6.956102 | TTTAGTCCCAACTTATAAGTCCCA | 57.044 | 37.500 | 18.28 | 1.06 | 38.57 | 4.37 |
4869 | 5484 | 6.956102 | TTAGTCCCAACTTATAAGTCCCAA | 57.044 | 37.500 | 18.28 | 3.05 | 38.57 | 4.12 |
4870 | 5485 | 5.437191 | AGTCCCAACTTATAAGTCCCAAG | 57.563 | 43.478 | 18.28 | 6.66 | 38.57 | 3.61 |
4871 | 5486 | 4.850386 | AGTCCCAACTTATAAGTCCCAAGT | 59.150 | 41.667 | 18.28 | 5.74 | 38.57 | 3.16 |
4872 | 5487 | 5.045797 | AGTCCCAACTTATAAGTCCCAAGTC | 60.046 | 44.000 | 18.28 | 6.78 | 38.57 | 3.01 |
4873 | 5488 | 4.226620 | TCCCAACTTATAAGTCCCAAGTCC | 59.773 | 45.833 | 18.28 | 0.00 | 38.57 | 3.85 |
4874 | 5489 | 4.524053 | CCAACTTATAAGTCCCAAGTCCC | 58.476 | 47.826 | 18.28 | 0.00 | 38.57 | 4.46 |
4875 | 5490 | 4.524053 | CAACTTATAAGTCCCAAGTCCCC | 58.476 | 47.826 | 18.28 | 0.00 | 38.57 | 4.81 |
4876 | 5491 | 3.810623 | ACTTATAAGTCCCAAGTCCCCA | 58.189 | 45.455 | 12.50 | 0.00 | 32.86 | 4.96 |
4877 | 5492 | 4.180723 | ACTTATAAGTCCCAAGTCCCCAA | 58.819 | 43.478 | 12.50 | 0.00 | 32.86 | 4.12 |
4878 | 5493 | 4.604490 | ACTTATAAGTCCCAAGTCCCCAAA | 59.396 | 41.667 | 12.50 | 0.00 | 32.86 | 3.28 |
4879 | 5494 | 5.075344 | ACTTATAAGTCCCAAGTCCCCAAAA | 59.925 | 40.000 | 12.50 | 0.00 | 32.86 | 2.44 |
4880 | 5495 | 2.858787 | AAGTCCCAAGTCCCCAAAAA | 57.141 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4881 | 5496 | 2.381752 | AGTCCCAAGTCCCCAAAAAG | 57.618 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4882 | 5497 | 1.573857 | AGTCCCAAGTCCCCAAAAAGT | 59.426 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
4883 | 5498 | 1.961394 | GTCCCAAGTCCCCAAAAAGTC | 59.039 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4884 | 5499 | 1.133294 | TCCCAAGTCCCCAAAAAGTCC | 60.133 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
4885 | 5500 | 1.338107 | CCAAGTCCCCAAAAAGTCCC | 58.662 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4886 | 5501 | 1.133167 | CCAAGTCCCCAAAAAGTCCCT | 60.133 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
4887 | 5502 | 2.109304 | CCAAGTCCCCAAAAAGTCCCTA | 59.891 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4888 | 5503 | 3.154710 | CAAGTCCCCAAAAAGTCCCTAC | 58.845 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4889 | 5504 | 2.424793 | AGTCCCCAAAAAGTCCCTACA | 58.575 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
4890 | 5505 | 2.993863 | AGTCCCCAAAAAGTCCCTACAT | 59.006 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
4891 | 5506 | 3.089284 | GTCCCCAAAAAGTCCCTACATG | 58.911 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4892 | 5507 | 2.719705 | TCCCCAAAAAGTCCCTACATGT | 59.280 | 45.455 | 2.69 | 2.69 | 0.00 | 3.21 |
4893 | 5508 | 3.141272 | TCCCCAAAAAGTCCCTACATGTT | 59.859 | 43.478 | 2.30 | 0.00 | 0.00 | 2.71 |
4894 | 5509 | 3.901222 | CCCCAAAAAGTCCCTACATGTTT | 59.099 | 43.478 | 2.30 | 0.00 | 0.00 | 2.83 |
4895 | 5510 | 4.262420 | CCCCAAAAAGTCCCTACATGTTTG | 60.262 | 45.833 | 2.30 | 0.00 | 0.00 | 2.93 |
4896 | 5511 | 4.262420 | CCCAAAAAGTCCCTACATGTTTGG | 60.262 | 45.833 | 2.30 | 8.41 | 39.89 | 3.28 |
4897 | 5512 | 4.343814 | CCAAAAAGTCCCTACATGTTTGGT | 59.656 | 41.667 | 2.30 | 0.00 | 37.78 | 3.67 |
4898 | 5513 | 5.163353 | CCAAAAAGTCCCTACATGTTTGGTT | 60.163 | 40.000 | 2.30 | 0.00 | 37.78 | 3.67 |
4899 | 5514 | 5.784578 | AAAAGTCCCTACATGTTTGGTTC | 57.215 | 39.130 | 2.30 | 3.85 | 0.00 | 3.62 |
4900 | 5515 | 3.434940 | AGTCCCTACATGTTTGGTTCC | 57.565 | 47.619 | 2.30 | 0.00 | 0.00 | 3.62 |
4901 | 5516 | 2.986728 | AGTCCCTACATGTTTGGTTCCT | 59.013 | 45.455 | 2.30 | 1.09 | 0.00 | 3.36 |
4902 | 5517 | 3.081804 | GTCCCTACATGTTTGGTTCCTG | 58.918 | 50.000 | 2.30 | 0.00 | 0.00 | 3.86 |
4903 | 5518 | 2.041081 | TCCCTACATGTTTGGTTCCTGG | 59.959 | 50.000 | 2.30 | 0.00 | 0.00 | 4.45 |
4904 | 5519 | 2.446435 | CCTACATGTTTGGTTCCTGGG | 58.554 | 52.381 | 2.30 | 0.00 | 0.00 | 4.45 |
4905 | 5520 | 2.041081 | CCTACATGTTTGGTTCCTGGGA | 59.959 | 50.000 | 2.30 | 0.00 | 0.00 | 4.37 |
4906 | 5521 | 1.995376 | ACATGTTTGGTTCCTGGGAC | 58.005 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4907 | 5522 | 1.499007 | ACATGTTTGGTTCCTGGGACT | 59.501 | 47.619 | 4.84 | 0.00 | 0.00 | 3.85 |
4908 | 5523 | 2.091333 | ACATGTTTGGTTCCTGGGACTT | 60.091 | 45.455 | 4.84 | 0.00 | 0.00 | 3.01 |
4909 | 5524 | 3.139397 | ACATGTTTGGTTCCTGGGACTTA | 59.861 | 43.478 | 4.84 | 0.00 | 0.00 | 2.24 |
4910 | 5525 | 3.955524 | TGTTTGGTTCCTGGGACTTAA | 57.044 | 42.857 | 4.84 | 0.00 | 0.00 | 1.85 |
4911 | 5526 | 3.558033 | TGTTTGGTTCCTGGGACTTAAC | 58.442 | 45.455 | 4.84 | 9.92 | 0.00 | 2.01 |
4912 | 5527 | 3.053544 | TGTTTGGTTCCTGGGACTTAACA | 60.054 | 43.478 | 16.45 | 16.45 | 0.00 | 2.41 |
4913 | 5528 | 4.149598 | GTTTGGTTCCTGGGACTTAACAT | 58.850 | 43.478 | 4.84 | 0.00 | 0.00 | 2.71 |
4914 | 5529 | 3.433306 | TGGTTCCTGGGACTTAACATG | 57.567 | 47.619 | 4.84 | 0.00 | 0.00 | 3.21 |
4915 | 5530 | 2.041081 | TGGTTCCTGGGACTTAACATGG | 59.959 | 50.000 | 4.84 | 0.00 | 0.00 | 3.66 |
4916 | 5531 | 2.307686 | GGTTCCTGGGACTTAACATGGA | 59.692 | 50.000 | 4.84 | 0.00 | 0.00 | 3.41 |
4917 | 5532 | 3.344515 | GTTCCTGGGACTTAACATGGAC | 58.655 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4918 | 5533 | 2.915869 | TCCTGGGACTTAACATGGACT | 58.084 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
4919 | 5534 | 4.069312 | TCCTGGGACTTAACATGGACTA | 57.931 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
4920 | 5535 | 4.431378 | TCCTGGGACTTAACATGGACTAA | 58.569 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
4921 | 5536 | 4.847512 | TCCTGGGACTTAACATGGACTAAA | 59.152 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
4922 | 5537 | 5.311121 | TCCTGGGACTTAACATGGACTAAAA | 59.689 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
4923 | 5538 | 5.648092 | CCTGGGACTTAACATGGACTAAAAG | 59.352 | 44.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4924 | 5539 | 6.442541 | TGGGACTTAACATGGACTAAAAGA | 57.557 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
4925 | 5540 | 6.235664 | TGGGACTTAACATGGACTAAAAGAC | 58.764 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4926 | 5541 | 5.646793 | GGGACTTAACATGGACTAAAAGACC | 59.353 | 44.000 | 0.00 | 1.56 | 0.00 | 3.85 |
4927 | 5542 | 6.235664 | GGACTTAACATGGACTAAAAGACCA | 58.764 | 40.000 | 0.00 | 0.74 | 43.65 | 4.02 |
4929 | 5544 | 8.044908 | GGACTTAACATGGACTAAAAGACCATA | 58.955 | 37.037 | 9.96 | 0.00 | 46.31 | 2.74 |
4930 | 5545 | 9.614792 | GACTTAACATGGACTAAAAGACCATAT | 57.385 | 33.333 | 9.96 | 6.06 | 46.31 | 1.78 |
4931 | 5546 | 9.975218 | ACTTAACATGGACTAAAAGACCATATT | 57.025 | 29.630 | 9.96 | 8.42 | 46.31 | 1.28 |
4935 | 5550 | 9.747898 | AACATGGACTAAAAGACCATATTACAA | 57.252 | 29.630 | 9.96 | 0.00 | 46.31 | 2.41 |
4936 | 5551 | 9.174166 | ACATGGACTAAAAGACCATATTACAAC | 57.826 | 33.333 | 9.96 | 0.00 | 46.31 | 3.32 |
4937 | 5552 | 9.396022 | CATGGACTAAAAGACCATATTACAACT | 57.604 | 33.333 | 9.96 | 0.00 | 46.31 | 3.16 |
4947 | 5562 | 9.448587 | AAGACCATATTACAACTATAAGTCCCT | 57.551 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
4948 | 5563 | 9.091220 | AGACCATATTACAACTATAAGTCCCTC | 57.909 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
4949 | 5564 | 8.792830 | ACCATATTACAACTATAAGTCCCTCA | 57.207 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
4950 | 5565 | 9.393786 | ACCATATTACAACTATAAGTCCCTCAT | 57.606 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
4955 | 5570 | 8.603898 | TTACAACTATAAGTCCCTCATTGAGA | 57.396 | 34.615 | 15.36 | 0.00 | 0.00 | 3.27 |
4956 | 5571 | 7.118496 | ACAACTATAAGTCCCTCATTGAGAG | 57.882 | 40.000 | 15.36 | 1.59 | 44.31 | 3.20 |
4957 | 5572 | 6.670027 | ACAACTATAAGTCCCTCATTGAGAGT | 59.330 | 38.462 | 15.36 | 5.07 | 43.12 | 3.24 |
4958 | 5573 | 6.969993 | ACTATAAGTCCCTCATTGAGAGTC | 57.030 | 41.667 | 15.36 | 0.00 | 43.12 | 3.36 |
4959 | 5574 | 6.678547 | ACTATAAGTCCCTCATTGAGAGTCT | 58.321 | 40.000 | 15.36 | 2.18 | 43.12 | 3.24 |
4960 | 5575 | 7.129425 | ACTATAAGTCCCTCATTGAGAGTCTT | 58.871 | 38.462 | 15.36 | 12.94 | 43.12 | 3.01 |
4961 | 5576 | 8.282982 | ACTATAAGTCCCTCATTGAGAGTCTTA | 58.717 | 37.037 | 15.36 | 14.55 | 43.12 | 2.10 |
4962 | 5577 | 9.308000 | CTATAAGTCCCTCATTGAGAGTCTTAT | 57.692 | 37.037 | 21.75 | 21.75 | 43.12 | 1.73 |
4963 | 5578 | 6.882768 | AAGTCCCTCATTGAGAGTCTTATT | 57.117 | 37.500 | 15.36 | 0.00 | 43.12 | 1.40 |
4964 | 5579 | 6.882768 | AGTCCCTCATTGAGAGTCTTATTT | 57.117 | 37.500 | 15.36 | 0.00 | 43.12 | 1.40 |
4965 | 5580 | 6.883744 | AGTCCCTCATTGAGAGTCTTATTTC | 58.116 | 40.000 | 15.36 | 0.00 | 43.12 | 2.17 |
4966 | 5581 | 6.441924 | AGTCCCTCATTGAGAGTCTTATTTCA | 59.558 | 38.462 | 15.36 | 0.00 | 43.12 | 2.69 |
4967 | 5582 | 7.127032 | AGTCCCTCATTGAGAGTCTTATTTCAT | 59.873 | 37.037 | 15.36 | 0.00 | 43.12 | 2.57 |
4968 | 5583 | 8.424918 | GTCCCTCATTGAGAGTCTTATTTCATA | 58.575 | 37.037 | 15.36 | 0.00 | 43.12 | 2.15 |
4969 | 5584 | 8.992349 | TCCCTCATTGAGAGTCTTATTTCATAA | 58.008 | 33.333 | 15.36 | 0.00 | 43.12 | 1.90 |
4970 | 5585 | 9.270640 | CCCTCATTGAGAGTCTTATTTCATAAG | 57.729 | 37.037 | 15.36 | 0.00 | 43.12 | 1.73 |
4971 | 5586 | 9.829507 | CCTCATTGAGAGTCTTATTTCATAAGT | 57.170 | 33.333 | 15.36 | 0.00 | 43.12 | 2.24 |
4981 | 5596 | 8.897752 | AGTCTTATTTCATAAGTCTCAAATGCC | 58.102 | 33.333 | 3.93 | 0.00 | 42.21 | 4.40 |
4982 | 5597 | 8.131731 | GTCTTATTTCATAAGTCTCAAATGCCC | 58.868 | 37.037 | 3.93 | 0.00 | 42.21 | 5.36 |
4983 | 5598 | 7.833682 | TCTTATTTCATAAGTCTCAAATGCCCA | 59.166 | 33.333 | 3.93 | 0.00 | 42.21 | 5.36 |
4984 | 5599 | 5.643379 | TTTCATAAGTCTCAAATGCCCAC | 57.357 | 39.130 | 0.00 | 0.00 | 0.00 | 4.61 |
4985 | 5600 | 4.574674 | TCATAAGTCTCAAATGCCCACT | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
4986 | 5601 | 4.922206 | TCATAAGTCTCAAATGCCCACTT | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4987 | 5602 | 5.324409 | TCATAAGTCTCAAATGCCCACTTT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
4988 | 5603 | 6.480763 | TCATAAGTCTCAAATGCCCACTTTA | 58.519 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
4989 | 5604 | 6.945435 | TCATAAGTCTCAAATGCCCACTTTAA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
4990 | 5605 | 5.712152 | AAGTCTCAAATGCCCACTTTAAG | 57.288 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
4991 | 5606 | 4.729868 | AGTCTCAAATGCCCACTTTAAGT | 58.270 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
4992 | 5607 | 4.762251 | AGTCTCAAATGCCCACTTTAAGTC | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4993 | 5608 | 4.079253 | TCTCAAATGCCCACTTTAAGTCC | 58.921 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
4994 | 5609 | 3.161866 | TCAAATGCCCACTTTAAGTCCC | 58.838 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
4995 | 5610 | 3.165071 | CAAATGCCCACTTTAAGTCCCT | 58.835 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
4996 | 5611 | 4.043561 | TCAAATGCCCACTTTAAGTCCCTA | 59.956 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
4997 | 5612 | 3.646736 | ATGCCCACTTTAAGTCCCTAC | 57.353 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
4998 | 5613 | 2.340731 | TGCCCACTTTAAGTCCCTACA | 58.659 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
4999 | 5614 | 2.712087 | TGCCCACTTTAAGTCCCTACAA | 59.288 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
5000 | 5615 | 3.244770 | TGCCCACTTTAAGTCCCTACAAG | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
5001 | 5616 | 3.244805 | GCCCACTTTAAGTCCCTACAAGT | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
5002 | 5617 | 4.576879 | CCCACTTTAAGTCCCTACAAGTC | 58.423 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
5003 | 5618 | 4.565028 | CCCACTTTAAGTCCCTACAAGTCC | 60.565 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5004 | 5619 | 4.565028 | CCACTTTAAGTCCCTACAAGTCCC | 60.565 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5005 | 5620 | 4.286291 | CACTTTAAGTCCCTACAAGTCCCT | 59.714 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
5006 | 5621 | 4.531339 | ACTTTAAGTCCCTACAAGTCCCTC | 59.469 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
5007 | 5622 | 1.954035 | AAGTCCCTACAAGTCCCTCC | 58.046 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5008 | 5623 | 1.094269 | AGTCCCTACAAGTCCCTCCT | 58.906 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
82 | 83 | 2.057922 | AGTGGATCCCTGACTTGTTGT | 58.942 | 47.619 | 9.90 | 0.00 | 0.00 | 3.32 |
150 | 289 | 1.725164 | CGAGAAGCCGGTAAGTTGTTC | 59.275 | 52.381 | 1.90 | 0.00 | 0.00 | 3.18 |
351 | 490 | 6.688385 | CGAATTACCGTCGACAGTTATCTTAA | 59.312 | 38.462 | 17.16 | 0.59 | 41.02 | 1.85 |
387 | 526 | 5.305139 | GGCTTTTCGTTGCCTAATTTCTA | 57.695 | 39.130 | 0.00 | 0.00 | 45.26 | 2.10 |
434 | 574 | 3.020984 | GCATAATTGGTTCGAGGGGAAA | 58.979 | 45.455 | 0.00 | 0.00 | 36.14 | 3.13 |
440 | 580 | 1.003545 | CTGCGGCATAATTGGTTCGAG | 60.004 | 52.381 | 1.75 | 0.00 | 0.00 | 4.04 |
467 | 613 | 1.002087 | CTCCGATTTTAGATCCGGGGG | 59.998 | 57.143 | 0.00 | 0.00 | 42.03 | 5.40 |
535 | 681 | 6.696441 | TCTTCTCGAAACTCTAACCCTATC | 57.304 | 41.667 | 0.00 | 0.00 | 0.00 | 2.08 |
741 | 901 | 1.516386 | CGAGTCGGACCCATTGACG | 60.516 | 63.158 | 4.10 | 0.00 | 37.69 | 4.35 |
742 | 902 | 4.496670 | CGAGTCGGACCCATTGAC | 57.503 | 61.111 | 4.10 | 0.00 | 0.00 | 3.18 |
983 | 1143 | 2.678471 | CATTGGGAATGGCTGGTTTC | 57.322 | 50.000 | 0.00 | 0.00 | 35.23 | 2.78 |
1136 | 1296 | 1.474332 | AAAAGGCGAGGTGGTACGGA | 61.474 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1168 | 1329 | 4.157656 | CGTCCAGCCATTAAAATCCTCAAA | 59.842 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
1181 | 1342 | 1.512926 | GATTTATCGCGTCCAGCCAT | 58.487 | 50.000 | 5.77 | 0.00 | 44.76 | 4.40 |
1182 | 1343 | 0.531974 | GGATTTATCGCGTCCAGCCA | 60.532 | 55.000 | 5.77 | 0.00 | 44.76 | 4.75 |
1257 | 1418 | 2.033448 | GCATTCACGACCACCCCA | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 4.96 |
1305 | 1466 | 3.567585 | CCTCATAAGAGCTCTCATCGTCA | 59.432 | 47.826 | 18.55 | 0.00 | 40.68 | 4.35 |
1369 | 1530 | 0.035458 | AGGTTCAGTAGGTGCACAGC | 59.965 | 55.000 | 20.43 | 7.79 | 0.00 | 4.40 |
1370 | 1531 | 1.070758 | ACAGGTTCAGTAGGTGCACAG | 59.929 | 52.381 | 20.43 | 2.68 | 0.00 | 3.66 |
1378 | 1539 | 7.220683 | CACAAAATCAAAACACAGGTTCAGTAG | 59.779 | 37.037 | 0.00 | 0.00 | 35.82 | 2.57 |
1380 | 1541 | 5.868801 | CACAAAATCAAAACACAGGTTCAGT | 59.131 | 36.000 | 0.00 | 0.00 | 35.82 | 3.41 |
1449 | 1610 | 4.831107 | TGTATGCTAGCTTCATGTTGTCA | 58.169 | 39.130 | 17.23 | 0.00 | 0.00 | 3.58 |
1574 | 1735 | 5.594725 | TGCACCACAACAAAACTAATAAGGA | 59.405 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1612 | 1773 | 2.170397 | TCGAGCTGAAATCCCAATAGCA | 59.830 | 45.455 | 0.00 | 0.00 | 36.87 | 3.49 |
1631 | 1792 | 4.176271 | TCACAGTGTCATATGCTTTCTCG | 58.824 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
1640 | 1801 | 3.813724 | GCTGCATCATCACAGTGTCATAT | 59.186 | 43.478 | 0.00 | 0.00 | 36.26 | 1.78 |
1667 | 1828 | 3.013648 | TGACCCCCTTCTTCCTATACTGT | 59.986 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
1732 | 1893 | 8.632679 | TGAGTATCCCAATTATGAAAAATCAGC | 58.367 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
1753 | 1914 | 7.744087 | ATGCAAATCTTGTAACTTGTGAGTA | 57.256 | 32.000 | 0.00 | 0.00 | 34.21 | 2.59 |
1773 | 1934 | 7.994194 | TCTACATATGTAACAAATGCAATGCA | 58.006 | 30.769 | 11.44 | 11.44 | 44.86 | 3.96 |
1885 | 2048 | 4.725556 | ATACAATGCAGTTATAACCGCG | 57.274 | 40.909 | 16.88 | 0.00 | 35.12 | 6.46 |
1950 | 2134 | 8.840200 | ACATTAGTAGGAAAGGACTTAGATGA | 57.160 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
2136 | 2392 | 6.659242 | AGTGAACCCAGAAAAATAATGTCGAT | 59.341 | 34.615 | 0.00 | 0.00 | 0.00 | 3.59 |
2151 | 2407 | 6.146021 | GCATCACAAAAATTAAGTGAACCCAG | 59.854 | 38.462 | 10.38 | 2.92 | 44.47 | 4.45 |
2175 | 2432 | 5.119898 | TGAATTTGCCATTTTCATAACGTGC | 59.880 | 36.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2299 | 2556 | 0.321653 | AGGCTGAACTAAACAGGGCG | 60.322 | 55.000 | 0.00 | 0.00 | 36.09 | 6.13 |
2324 | 2581 | 9.692749 | TTGGTATCAAATTAAACGCATAAACAA | 57.307 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2394 | 2651 | 3.490348 | GCCTGGTGCATATATCCTTGTT | 58.510 | 45.455 | 0.00 | 0.00 | 40.77 | 2.83 |
2413 | 2671 | 6.143919 | GCTGTTTAGTTCAAATTACAAGTGCC | 59.856 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
2539 | 2797 | 9.466497 | AGGAATGTGTTAAGATCATACAATTGT | 57.534 | 29.630 | 16.68 | 16.68 | 0.00 | 2.71 |
2704 | 2963 | 6.674519 | GCACGCTCAAGCATTACAACTTATAA | 60.675 | 38.462 | 2.50 | 0.00 | 42.21 | 0.98 |
2705 | 2964 | 5.220586 | GCACGCTCAAGCATTACAACTTATA | 60.221 | 40.000 | 2.50 | 0.00 | 42.21 | 0.98 |
2745 | 3004 | 9.619316 | TGATAACAACACTAAATTAACATGCAC | 57.381 | 29.630 | 0.00 | 0.00 | 0.00 | 4.57 |
2907 | 3166 | 4.057406 | AGAGATTCAGAGAGGCATTTCG | 57.943 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
2911 | 3170 | 4.680172 | CGTTGAAGAGATTCAGAGAGGCAT | 60.680 | 45.833 | 0.00 | 0.00 | 31.87 | 4.40 |
2945 | 3204 | 4.442893 | CCAGGGAGACATACGAGCATTTAA | 60.443 | 45.833 | 0.00 | 0.00 | 0.00 | 1.52 |
2985 | 3244 | 8.700973 | ACCAACACCTTAGTTTTTGATATGTTT | 58.299 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3010 | 3269 | 5.048782 | TGTGCACACAAGATGAGGAAAATAC | 60.049 | 40.000 | 17.42 | 0.00 | 38.56 | 1.89 |
3032 | 3291 | 6.324819 | CCAAATAGATGCATTCGAACTTTGT | 58.675 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3041 | 3300 | 5.603596 | TCATTTGCCCAAATAGATGCATTC | 58.396 | 37.500 | 0.00 | 0.00 | 38.84 | 2.67 |
3289 | 3548 | 8.246430 | TGTGCTAATTATAGGCTAGTAAGTGT | 57.754 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
3332 | 3591 | 1.081242 | CCACGCAGACAACAATGGC | 60.081 | 57.895 | 0.00 | 0.00 | 33.34 | 4.40 |
3531 | 3790 | 2.188817 | ACCCAAGAAGAATCTAGCGGT | 58.811 | 47.619 | 0.00 | 0.00 | 33.77 | 5.68 |
3574 | 3833 | 5.216648 | GCAAATAAAAAGTACAAGCGGTCA | 58.783 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
3744 | 4003 | 5.149273 | GCATCTACACACACTTCACATTTG | 58.851 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
3774 | 4033 | 8.340443 | CACAGATCACAATGGTTCTACAATATG | 58.660 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
3790 | 4144 | 2.102925 | TGTGCTCAACTCACAGATCACA | 59.897 | 45.455 | 0.00 | 0.00 | 39.29 | 3.58 |
3843 | 4197 | 1.671979 | TCTAGCCAGCATGCATGTTC | 58.328 | 50.000 | 26.79 | 12.06 | 31.97 | 3.18 |
4105 | 4466 | 2.432444 | TGGCTTTTCCCTAATGTGACG | 58.568 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
4167 | 4528 | 6.434028 | CACCCAAAATTCTCTACCTCAAATGA | 59.566 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
4194 | 4555 | 4.268405 | CCACAATTGTTCAAACAGAAGCAC | 59.732 | 41.667 | 8.77 | 0.00 | 40.50 | 4.40 |
4218 | 4579 | 0.040958 | CGCCTTTTGCACAGTGAGTC | 60.041 | 55.000 | 4.15 | 0.00 | 41.33 | 3.36 |
4376 | 4738 | 6.050432 | TCAATTAATTTGGAATGGAGCATGC | 58.950 | 36.000 | 10.51 | 10.51 | 35.92 | 4.06 |
4515 | 4899 | 9.295825 | CCTCTGTCTCATAATATAAGACTCTGT | 57.704 | 37.037 | 5.27 | 0.00 | 40.07 | 3.41 |
4516 | 4900 | 8.739039 | CCCTCTGTCTCATAATATAAGACTCTG | 58.261 | 40.741 | 5.27 | 0.00 | 40.07 | 3.35 |
4517 | 4901 | 8.674173 | TCCCTCTGTCTCATAATATAAGACTCT | 58.326 | 37.037 | 5.27 | 0.00 | 40.07 | 3.24 |
4518 | 4902 | 8.871629 | TCCCTCTGTCTCATAATATAAGACTC | 57.128 | 38.462 | 5.27 | 0.00 | 40.07 | 3.36 |
4520 | 4904 | 8.644374 | ACTCCCTCTGTCTCATAATATAAGAC | 57.356 | 38.462 | 0.00 | 0.00 | 39.87 | 3.01 |
4521 | 4905 | 9.742144 | GTACTCCCTCTGTCTCATAATATAAGA | 57.258 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
4522 | 4906 | 8.962679 | GGTACTCCCTCTGTCTCATAATATAAG | 58.037 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
4523 | 4907 | 8.679725 | AGGTACTCCCTCTGTCTCATAATATAA | 58.320 | 37.037 | 0.00 | 0.00 | 40.71 | 0.98 |
4524 | 4908 | 8.110271 | CAGGTACTCCCTCTGTCTCATAATATA | 58.890 | 40.741 | 0.00 | 0.00 | 43.86 | 0.86 |
4525 | 4909 | 6.951198 | CAGGTACTCCCTCTGTCTCATAATAT | 59.049 | 42.308 | 0.00 | 0.00 | 43.86 | 1.28 |
4527 | 4911 | 5.144100 | CAGGTACTCCCTCTGTCTCATAAT | 58.856 | 45.833 | 0.00 | 0.00 | 43.86 | 1.28 |
4532 | 4916 | 1.107945 | GCAGGTACTCCCTCTGTCTC | 58.892 | 60.000 | 0.00 | 0.00 | 43.86 | 3.36 |
4533 | 4917 | 0.707616 | AGCAGGTACTCCCTCTGTCT | 59.292 | 55.000 | 0.00 | 0.00 | 43.86 | 3.41 |
4534 | 4918 | 1.205893 | CAAGCAGGTACTCCCTCTGTC | 59.794 | 57.143 | 0.00 | 0.00 | 43.86 | 3.51 |
4536 | 4920 | 1.066573 | CACAAGCAGGTACTCCCTCTG | 60.067 | 57.143 | 0.00 | 0.00 | 43.86 | 3.35 |
4537 | 4921 | 1.270907 | CACAAGCAGGTACTCCCTCT | 58.729 | 55.000 | 0.00 | 0.00 | 43.86 | 3.69 |
4558 | 4947 | 5.067936 | GCACATTTCTAGACCAGACTAGCTA | 59.932 | 44.000 | 0.00 | 0.00 | 39.50 | 3.32 |
4604 | 5219 | 2.036556 | ACGAATTTTGTGCAGCTTCG | 57.963 | 45.000 | 9.88 | 9.88 | 43.10 | 3.79 |
4669 | 5284 | 1.337728 | ACGACGCTGGACATTGATTGA | 60.338 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4672 | 5287 | 1.464608 | CAAACGACGCTGGACATTGAT | 59.535 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4685 | 5300 | 4.614946 | ACTGTTACTCCTACACAAACGAC | 58.385 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
4724 | 5339 | 6.200854 | CACCTTGGTTAAGAATGAACTTTTGC | 59.799 | 38.462 | 0.00 | 0.00 | 35.92 | 3.68 |
4813 | 5428 | 7.227910 | TCCAAAGACTTATGAACCAAACAGTAC | 59.772 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
4814 | 5429 | 7.227910 | GTCCAAAGACTTATGAACCAAACAGTA | 59.772 | 37.037 | 0.00 | 0.00 | 40.10 | 2.74 |
4815 | 5430 | 6.039382 | GTCCAAAGACTTATGAACCAAACAGT | 59.961 | 38.462 | 0.00 | 0.00 | 40.10 | 3.55 |
4816 | 5431 | 6.438763 | GTCCAAAGACTTATGAACCAAACAG | 58.561 | 40.000 | 0.00 | 0.00 | 40.10 | 3.16 |
4817 | 5432 | 6.385649 | GTCCAAAGACTTATGAACCAAACA | 57.614 | 37.500 | 0.00 | 0.00 | 40.10 | 2.83 |
4843 | 5458 | 7.757611 | TGGGACTTATAAGTTGGGACTAAAAA | 58.242 | 34.615 | 18.96 | 0.00 | 39.88 | 1.94 |
4844 | 5459 | 7.332433 | TGGGACTTATAAGTTGGGACTAAAA | 57.668 | 36.000 | 18.96 | 0.00 | 39.88 | 1.52 |
4845 | 5460 | 6.956102 | TGGGACTTATAAGTTGGGACTAAA | 57.044 | 37.500 | 18.96 | 0.00 | 39.88 | 1.85 |
4846 | 5461 | 6.502863 | ACTTGGGACTTATAAGTTGGGACTAA | 59.497 | 38.462 | 18.96 | 10.32 | 39.88 | 2.24 |
4847 | 5462 | 6.027482 | ACTTGGGACTTATAAGTTGGGACTA | 58.973 | 40.000 | 18.96 | 3.96 | 39.88 | 2.59 |
4848 | 5463 | 4.850386 | ACTTGGGACTTATAAGTTGGGACT | 59.150 | 41.667 | 18.96 | 0.00 | 39.88 | 3.85 |
4849 | 5464 | 5.175388 | ACTTGGGACTTATAAGTTGGGAC | 57.825 | 43.478 | 18.96 | 6.19 | 39.88 | 4.46 |
4850 | 5465 | 4.226620 | GGACTTGGGACTTATAAGTTGGGA | 59.773 | 45.833 | 18.96 | 6.15 | 39.88 | 4.37 |
4851 | 5466 | 4.524053 | GGACTTGGGACTTATAAGTTGGG | 58.476 | 47.826 | 18.96 | 10.37 | 39.88 | 4.12 |
4852 | 5467 | 4.524053 | GGGACTTGGGACTTATAAGTTGG | 58.476 | 47.826 | 18.96 | 10.07 | 39.88 | 3.77 |
4853 | 5468 | 4.018779 | TGGGGACTTGGGACTTATAAGTTG | 60.019 | 45.833 | 18.96 | 9.81 | 39.88 | 3.16 |
4854 | 5469 | 4.180723 | TGGGGACTTGGGACTTATAAGTT | 58.819 | 43.478 | 18.96 | 2.29 | 39.88 | 2.66 |
4855 | 5470 | 3.810623 | TGGGGACTTGGGACTTATAAGT | 58.189 | 45.455 | 18.05 | 18.05 | 43.16 | 2.24 |
4856 | 5471 | 4.855298 | TTGGGGACTTGGGACTTATAAG | 57.145 | 45.455 | 11.05 | 11.05 | 0.00 | 1.73 |
4857 | 5472 | 5.602291 | TTTTGGGGACTTGGGACTTATAA | 57.398 | 39.130 | 0.00 | 0.00 | 0.00 | 0.98 |
4858 | 5473 | 5.075344 | ACTTTTTGGGGACTTGGGACTTATA | 59.925 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
4859 | 5474 | 4.140782 | ACTTTTTGGGGACTTGGGACTTAT | 60.141 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
4860 | 5475 | 3.205733 | ACTTTTTGGGGACTTGGGACTTA | 59.794 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
4861 | 5476 | 2.023404 | ACTTTTTGGGGACTTGGGACTT | 60.023 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
4862 | 5477 | 1.573857 | ACTTTTTGGGGACTTGGGACT | 59.426 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
4863 | 5478 | 1.961394 | GACTTTTTGGGGACTTGGGAC | 59.039 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
4864 | 5479 | 1.133294 | GGACTTTTTGGGGACTTGGGA | 60.133 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
4865 | 5480 | 1.338107 | GGACTTTTTGGGGACTTGGG | 58.662 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
4866 | 5481 | 1.133167 | AGGGACTTTTTGGGGACTTGG | 60.133 | 52.381 | 0.00 | 0.00 | 27.25 | 3.61 |
4867 | 5482 | 2.381752 | AGGGACTTTTTGGGGACTTG | 57.618 | 50.000 | 0.00 | 0.00 | 27.25 | 3.16 |
4868 | 5483 | 2.787035 | TGTAGGGACTTTTTGGGGACTT | 59.213 | 45.455 | 0.00 | 0.00 | 41.75 | 3.01 |
4869 | 5484 | 2.424793 | TGTAGGGACTTTTTGGGGACT | 58.575 | 47.619 | 0.00 | 0.00 | 41.75 | 3.85 |
4870 | 5485 | 2.963599 | TGTAGGGACTTTTTGGGGAC | 57.036 | 50.000 | 0.00 | 0.00 | 41.75 | 4.46 |
4871 | 5486 | 2.719705 | ACATGTAGGGACTTTTTGGGGA | 59.280 | 45.455 | 0.00 | 0.00 | 41.75 | 4.81 |
4872 | 5487 | 3.169512 | ACATGTAGGGACTTTTTGGGG | 57.830 | 47.619 | 0.00 | 0.00 | 41.75 | 4.96 |
4873 | 5488 | 4.262420 | CCAAACATGTAGGGACTTTTTGGG | 60.262 | 45.833 | 9.55 | 0.00 | 41.75 | 4.12 |
4874 | 5489 | 4.343814 | ACCAAACATGTAGGGACTTTTTGG | 59.656 | 41.667 | 19.48 | 17.32 | 41.75 | 3.28 |
4875 | 5490 | 5.529581 | ACCAAACATGTAGGGACTTTTTG | 57.470 | 39.130 | 19.48 | 8.12 | 41.75 | 2.44 |
4876 | 5491 | 5.069914 | GGAACCAAACATGTAGGGACTTTTT | 59.930 | 40.000 | 19.48 | 5.69 | 41.75 | 1.94 |
4877 | 5492 | 4.587262 | GGAACCAAACATGTAGGGACTTTT | 59.413 | 41.667 | 19.48 | 6.31 | 41.75 | 2.27 |
4878 | 5493 | 4.141018 | AGGAACCAAACATGTAGGGACTTT | 60.141 | 41.667 | 19.48 | 6.62 | 41.75 | 2.66 |
4879 | 5494 | 3.397955 | AGGAACCAAACATGTAGGGACTT | 59.602 | 43.478 | 19.48 | 6.91 | 41.75 | 3.01 |
4880 | 5495 | 2.986728 | AGGAACCAAACATGTAGGGACT | 59.013 | 45.455 | 19.48 | 11.76 | 46.37 | 3.85 |
4881 | 5496 | 3.081804 | CAGGAACCAAACATGTAGGGAC | 58.918 | 50.000 | 19.48 | 12.61 | 0.00 | 4.46 |
4882 | 5497 | 2.041081 | CCAGGAACCAAACATGTAGGGA | 59.959 | 50.000 | 19.48 | 0.00 | 0.00 | 4.20 |
4883 | 5498 | 2.446435 | CCAGGAACCAAACATGTAGGG | 58.554 | 52.381 | 18.43 | 15.73 | 0.00 | 3.53 |
4884 | 5499 | 2.041081 | TCCCAGGAACCAAACATGTAGG | 59.959 | 50.000 | 14.04 | 14.04 | 0.00 | 3.18 |
4885 | 5500 | 3.081804 | GTCCCAGGAACCAAACATGTAG | 58.918 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4886 | 5501 | 2.714250 | AGTCCCAGGAACCAAACATGTA | 59.286 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
4887 | 5502 | 1.499007 | AGTCCCAGGAACCAAACATGT | 59.501 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
4888 | 5503 | 2.292828 | AGTCCCAGGAACCAAACATG | 57.707 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4889 | 5504 | 4.149598 | GTTAAGTCCCAGGAACCAAACAT | 58.850 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
4890 | 5505 | 3.053544 | TGTTAAGTCCCAGGAACCAAACA | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4891 | 5506 | 3.558033 | TGTTAAGTCCCAGGAACCAAAC | 58.442 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
4892 | 5507 | 3.955524 | TGTTAAGTCCCAGGAACCAAA | 57.044 | 42.857 | 0.00 | 0.00 | 0.00 | 3.28 |
4893 | 5508 | 3.499563 | CCATGTTAAGTCCCAGGAACCAA | 60.500 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
4894 | 5509 | 2.041081 | CCATGTTAAGTCCCAGGAACCA | 59.959 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4895 | 5510 | 2.307686 | TCCATGTTAAGTCCCAGGAACC | 59.692 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
4896 | 5511 | 3.009143 | AGTCCATGTTAAGTCCCAGGAAC | 59.991 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
4897 | 5512 | 3.256704 | AGTCCATGTTAAGTCCCAGGAA | 58.743 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
4898 | 5513 | 2.915869 | AGTCCATGTTAAGTCCCAGGA | 58.084 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
4899 | 5514 | 4.837093 | TTAGTCCATGTTAAGTCCCAGG | 57.163 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
4900 | 5515 | 6.371825 | GTCTTTTAGTCCATGTTAAGTCCCAG | 59.628 | 42.308 | 0.00 | 0.00 | 0.00 | 4.45 |
4901 | 5516 | 6.235664 | GTCTTTTAGTCCATGTTAAGTCCCA | 58.764 | 40.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4902 | 5517 | 5.646793 | GGTCTTTTAGTCCATGTTAAGTCCC | 59.353 | 44.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4903 | 5518 | 6.235664 | TGGTCTTTTAGTCCATGTTAAGTCC | 58.764 | 40.000 | 0.00 | 0.00 | 28.55 | 3.85 |
4904 | 5519 | 7.923414 | ATGGTCTTTTAGTCCATGTTAAGTC | 57.077 | 36.000 | 4.95 | 0.00 | 41.46 | 3.01 |
4905 | 5520 | 9.975218 | AATATGGTCTTTTAGTCCATGTTAAGT | 57.025 | 29.630 | 13.41 | 0.00 | 42.62 | 2.24 |
4909 | 5524 | 9.747898 | TTGTAATATGGTCTTTTAGTCCATGTT | 57.252 | 29.630 | 15.13 | 15.13 | 42.62 | 2.71 |
4910 | 5525 | 9.174166 | GTTGTAATATGGTCTTTTAGTCCATGT | 57.826 | 33.333 | 13.41 | 6.18 | 42.62 | 3.21 |
4911 | 5526 | 9.396022 | AGTTGTAATATGGTCTTTTAGTCCATG | 57.604 | 33.333 | 13.41 | 0.00 | 42.62 | 3.66 |
4921 | 5536 | 9.448587 | AGGGACTTATAGTTGTAATATGGTCTT | 57.551 | 33.333 | 0.00 | 0.00 | 27.25 | 3.01 |
4922 | 5537 | 9.091220 | GAGGGACTTATAGTTGTAATATGGTCT | 57.909 | 37.037 | 0.00 | 0.00 | 41.55 | 3.85 |
4923 | 5538 | 8.867097 | TGAGGGACTTATAGTTGTAATATGGTC | 58.133 | 37.037 | 0.00 | 0.00 | 41.55 | 4.02 |
4924 | 5539 | 8.792830 | TGAGGGACTTATAGTTGTAATATGGT | 57.207 | 34.615 | 0.00 | 0.00 | 41.55 | 3.55 |
4929 | 5544 | 9.213777 | TCTCAATGAGGGACTTATAGTTGTAAT | 57.786 | 33.333 | 10.71 | 0.00 | 41.55 | 1.89 |
4930 | 5545 | 8.603898 | TCTCAATGAGGGACTTATAGTTGTAA | 57.396 | 34.615 | 10.71 | 0.00 | 41.55 | 2.41 |
4931 | 5546 | 7.839705 | ACTCTCAATGAGGGACTTATAGTTGTA | 59.160 | 37.037 | 18.25 | 0.00 | 46.72 | 2.41 |
4932 | 5547 | 6.670027 | ACTCTCAATGAGGGACTTATAGTTGT | 59.330 | 38.462 | 18.25 | 0.00 | 46.72 | 3.32 |
4933 | 5548 | 7.069331 | AGACTCTCAATGAGGGACTTATAGTTG | 59.931 | 40.741 | 18.25 | 0.00 | 46.72 | 3.16 |
4934 | 5549 | 7.129425 | AGACTCTCAATGAGGGACTTATAGTT | 58.871 | 38.462 | 18.25 | 0.00 | 46.72 | 2.24 |
4935 | 5550 | 6.678547 | AGACTCTCAATGAGGGACTTATAGT | 58.321 | 40.000 | 18.25 | 6.90 | 46.72 | 2.12 |
4936 | 5551 | 7.595819 | AAGACTCTCAATGAGGGACTTATAG | 57.404 | 40.000 | 22.51 | 7.73 | 41.64 | 1.31 |
4939 | 5554 | 7.979786 | AATAAGACTCTCAATGAGGGACTTA | 57.020 | 36.000 | 27.68 | 27.68 | 45.57 | 2.24 |
4940 | 5555 | 6.882768 | AATAAGACTCTCAATGAGGGACTT | 57.117 | 37.500 | 25.71 | 25.71 | 44.42 | 3.01 |
4941 | 5556 | 6.441924 | TGAAATAAGACTCTCAATGAGGGACT | 59.558 | 38.462 | 18.25 | 13.46 | 46.72 | 3.85 |
4942 | 5557 | 6.644347 | TGAAATAAGACTCTCAATGAGGGAC | 58.356 | 40.000 | 18.25 | 11.06 | 46.72 | 4.46 |
4943 | 5558 | 6.874278 | TGAAATAAGACTCTCAATGAGGGA | 57.126 | 37.500 | 18.25 | 0.00 | 46.72 | 4.20 |
4959 | 5574 | 7.615365 | AGTGGGCATTTGAGACTTATGAAATAA | 59.385 | 33.333 | 0.00 | 0.00 | 36.20 | 1.40 |
4960 | 5575 | 7.118723 | AGTGGGCATTTGAGACTTATGAAATA | 58.881 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
4961 | 5576 | 5.954150 | AGTGGGCATTTGAGACTTATGAAAT | 59.046 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4962 | 5577 | 5.324409 | AGTGGGCATTTGAGACTTATGAAA | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
4963 | 5578 | 4.922206 | AGTGGGCATTTGAGACTTATGAA | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
4964 | 5579 | 4.574674 | AGTGGGCATTTGAGACTTATGA | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 2.15 |
4965 | 5580 | 5.649782 | AAAGTGGGCATTTGAGACTTATG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
4966 | 5581 | 6.948309 | ACTTAAAGTGGGCATTTGAGACTTAT | 59.052 | 34.615 | 7.52 | 0.00 | 30.26 | 1.73 |
4967 | 5582 | 6.303839 | ACTTAAAGTGGGCATTTGAGACTTA | 58.696 | 36.000 | 7.52 | 0.00 | 30.26 | 2.24 |
4968 | 5583 | 5.140454 | ACTTAAAGTGGGCATTTGAGACTT | 58.860 | 37.500 | 7.52 | 0.00 | 30.26 | 3.01 |
4969 | 5584 | 4.729868 | ACTTAAAGTGGGCATTTGAGACT | 58.270 | 39.130 | 7.52 | 0.00 | 30.26 | 3.24 |
4970 | 5585 | 4.082733 | GGACTTAAAGTGGGCATTTGAGAC | 60.083 | 45.833 | 7.52 | 2.89 | 30.26 | 3.36 |
4971 | 5586 | 4.079253 | GGACTTAAAGTGGGCATTTGAGA | 58.921 | 43.478 | 7.52 | 0.00 | 30.26 | 3.27 |
4972 | 5587 | 3.193479 | GGGACTTAAAGTGGGCATTTGAG | 59.807 | 47.826 | 0.00 | 0.00 | 31.53 | 3.02 |
4973 | 5588 | 3.161866 | GGGACTTAAAGTGGGCATTTGA | 58.838 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
4974 | 5589 | 3.165071 | AGGGACTTAAAGTGGGCATTTG | 58.835 | 45.455 | 0.00 | 0.00 | 27.25 | 2.32 |
4975 | 5590 | 3.542969 | AGGGACTTAAAGTGGGCATTT | 57.457 | 42.857 | 0.00 | 0.00 | 27.25 | 2.32 |
4976 | 5591 | 3.332485 | TGTAGGGACTTAAAGTGGGCATT | 59.668 | 43.478 | 0.00 | 0.00 | 41.75 | 3.56 |
4977 | 5592 | 2.916934 | TGTAGGGACTTAAAGTGGGCAT | 59.083 | 45.455 | 0.00 | 0.00 | 41.75 | 4.40 |
4978 | 5593 | 2.340731 | TGTAGGGACTTAAAGTGGGCA | 58.659 | 47.619 | 0.00 | 0.00 | 41.75 | 5.36 |
4979 | 5594 | 3.244805 | ACTTGTAGGGACTTAAAGTGGGC | 60.245 | 47.826 | 0.00 | 0.00 | 40.03 | 5.36 |
4980 | 5595 | 4.565028 | GGACTTGTAGGGACTTAAAGTGGG | 60.565 | 50.000 | 0.00 | 0.00 | 41.07 | 4.61 |
4981 | 5596 | 4.565028 | GGGACTTGTAGGGACTTAAAGTGG | 60.565 | 50.000 | 0.00 | 0.00 | 41.07 | 4.00 |
4982 | 5597 | 4.286291 | AGGGACTTGTAGGGACTTAAAGTG | 59.714 | 45.833 | 0.00 | 0.00 | 41.07 | 3.16 |
4983 | 5598 | 4.500452 | AGGGACTTGTAGGGACTTAAAGT | 58.500 | 43.478 | 0.00 | 0.00 | 42.79 | 2.66 |
4984 | 5599 | 4.081031 | GGAGGGACTTGTAGGGACTTAAAG | 60.081 | 50.000 | 0.00 | 0.00 | 41.55 | 1.85 |
4985 | 5600 | 3.842436 | GGAGGGACTTGTAGGGACTTAAA | 59.158 | 47.826 | 0.00 | 0.00 | 41.55 | 1.52 |
4986 | 5601 | 3.078612 | AGGAGGGACTTGTAGGGACTTAA | 59.921 | 47.826 | 0.00 | 0.00 | 41.55 | 1.85 |
4987 | 5602 | 2.658489 | AGGAGGGACTTGTAGGGACTTA | 59.342 | 50.000 | 0.00 | 0.00 | 41.55 | 2.24 |
4988 | 5603 | 1.437547 | AGGAGGGACTTGTAGGGACTT | 59.562 | 52.381 | 0.00 | 0.00 | 41.55 | 3.01 |
4989 | 5604 | 1.094269 | AGGAGGGACTTGTAGGGACT | 58.906 | 55.000 | 0.00 | 0.00 | 41.55 | 3.85 |
4990 | 5605 | 3.713867 | AGGAGGGACTTGTAGGGAC | 57.286 | 57.895 | 0.00 | 0.00 | 41.55 | 4.46 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.