Multiple sequence alignment - TraesCS7D01G308300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G308300 chr7D 100.000 5031 0 0 1 5031 390694218 390689188 0.000000e+00 9291.0
1 TraesCS7D01G308300 chr7D 92.800 250 13 4 1 247 390838331 390838084 1.720000e-94 357.0
2 TraesCS7D01G308300 chr7B 95.917 2302 75 7 630 2922 387164227 387161936 0.000000e+00 3712.0
3 TraesCS7D01G308300 chr7B 91.923 1758 63 33 3323 5031 387161491 387159764 0.000000e+00 2386.0
4 TraesCS7D01G308300 chr7B 94.921 315 10 4 2962 3274 387161805 387161495 5.850000e-134 488.0
5 TraesCS7D01G308300 chr7B 82.251 231 20 9 288 499 387195573 387195345 4.000000e-41 180.0
6 TraesCS7D01G308300 chr7B 97.778 45 1 0 504 548 618093679 618093723 1.500000e-10 78.7
7 TraesCS7D01G308300 chr7B 97.778 45 1 0 504 548 618097485 618097529 1.500000e-10 78.7
8 TraesCS7D01G308300 chr7B 97.727 44 1 0 504 547 618091493 618091536 5.400000e-10 76.8
9 TraesCS7D01G308300 chr7A 91.993 1811 70 28 3282 5031 442273001 442271205 0.000000e+00 2471.0
10 TraesCS7D01G308300 chr7A 94.266 1622 60 8 591 2202 442275571 442273973 0.000000e+00 2449.0
11 TraesCS7D01G308300 chr7A 91.100 618 28 6 2195 2812 442273596 442273006 0.000000e+00 811.0
12 TraesCS7D01G308300 chr7A 82.787 244 22 2 282 506 442278928 442278686 3.070000e-47 200.0
13 TraesCS7D01G308300 chr7A 91.765 85 7 0 309 393 730900600 730900684 8.850000e-23 119.0
14 TraesCS7D01G308300 chr7A 78.505 214 21 7 309 499 670169510 670169299 3.180000e-22 117.0
15 TraesCS7D01G308300 chr6A 91.603 786 43 11 2659 3435 498097133 498097904 0.000000e+00 1064.0
16 TraesCS7D01G308300 chr4D 78.799 1316 163 50 817 2113 27394973 27396191 0.000000e+00 778.0
17 TraesCS7D01G308300 chr4D 87.288 236 23 6 17 247 173215963 173215730 3.860000e-66 263.0
18 TraesCS7D01G308300 chr4D 78.440 218 19 8 309 500 374083819 374084034 3.180000e-22 117.0
19 TraesCS7D01G308300 chr4B 78.376 1318 171 48 813 2114 40074179 40075398 0.000000e+00 750.0
20 TraesCS7D01G308300 chr4A 82.008 717 76 23 1399 2114 575780993 575780329 1.220000e-155 560.0
21 TraesCS7D01G308300 chr3D 88.492 252 21 6 1 247 332739283 332739035 1.060000e-76 298.0
22 TraesCS7D01G308300 chr3D 87.302 252 25 6 1 247 332754052 332753803 1.070000e-71 281.0
23 TraesCS7D01G308300 chr3D 79.474 190 26 7 309 488 26640041 26639855 6.840000e-24 122.0
24 TraesCS7D01G308300 chr1D 88.211 246 24 5 1 244 177553358 177553600 6.370000e-74 289.0
25 TraesCS7D01G308300 chr1D 90.588 85 8 0 309 393 361881359 361881443 4.120000e-21 113.0
26 TraesCS7D01G308300 chr1D 82.222 90 13 3 401 488 184828477 184828389 1.940000e-09 75.0
27 TraesCS7D01G308300 chr6D 84.674 261 34 5 1 257 210290004 210290262 6.460000e-64 255.0
28 TraesCS7D01G308300 chr6D 89.535 86 9 0 308 393 156747724 156747809 5.330000e-20 110.0
29 TraesCS7D01G308300 chr3A 85.776 232 28 4 17 245 533586852 533587081 1.810000e-59 241.0
30 TraesCS7D01G308300 chr6B 84.127 252 34 4 1 247 399926508 399926258 6.510000e-59 239.0
31 TraesCS7D01G308300 chr6B 79.343 213 18 10 309 497 640868722 640868512 5.290000e-25 126.0
32 TraesCS7D01G308300 chr2A 84.064 251 30 8 1 244 335585339 335585586 3.030000e-57 233.0
33 TraesCS7D01G308300 chr5B 90.588 85 8 0 309 393 696223451 696223367 4.120000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G308300 chr7D 390689188 390694218 5030 True 9291.000000 9291 100.000000 1 5031 1 chr7D.!!$R1 5030
1 TraesCS7D01G308300 chr7B 387159764 387164227 4463 True 2195.333333 3712 94.253667 630 5031 3 chr7B.!!$R2 4401
2 TraesCS7D01G308300 chr7A 442271205 442278928 7723 True 1482.750000 2471 90.036500 282 5031 4 chr7A.!!$R2 4749
3 TraesCS7D01G308300 chr6A 498097133 498097904 771 False 1064.000000 1064 91.603000 2659 3435 1 chr6A.!!$F1 776
4 TraesCS7D01G308300 chr4D 27394973 27396191 1218 False 778.000000 778 78.799000 817 2113 1 chr4D.!!$F1 1296
5 TraesCS7D01G308300 chr4B 40074179 40075398 1219 False 750.000000 750 78.376000 813 2114 1 chr4B.!!$F1 1301
6 TraesCS7D01G308300 chr4A 575780329 575780993 664 True 560.000000 560 82.008000 1399 2114 1 chr4A.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.102844 TTTTCCCTCGTGTTCGTCGT 59.897 50.0 0.00 0.00 38.33 4.34 F
189 190 0.156035 CGTGTTCGTCGTGTTCTTCG 59.844 55.0 0.00 0.00 0.00 3.79 F
201 202 0.178301 GTTCTTCGTGGGATCCCCTC 59.822 60.0 28.58 19.12 45.70 4.30 F
207 208 0.179018 CGTGGGATCCCCTCCAAATC 60.179 60.0 28.58 7.19 46.98 2.17 F
210 211 0.179018 GGGATCCCCTCCAAATCGTG 60.179 60.0 21.42 0.00 46.98 4.35 F
1107 4253 0.037160 TGGGGATGATGCCGATGATG 59.963 55.0 0.00 0.00 0.00 3.07 F
2128 5289 0.034574 TTTGTGTGCACCACCTCAGT 60.035 50.0 15.69 0.00 43.85 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 4239 1.303888 GCCCCATCATCGGCATCAT 60.304 57.895 0.00 0.0 45.01 2.45 R
1094 4240 2.113774 GCCCCATCATCGGCATCA 59.886 61.111 0.00 0.0 45.01 3.07 R
1101 4247 2.114838 GCCTCCTGCCCCATCATC 59.885 66.667 0.00 0.0 0.00 2.92 R
1102 4248 2.369291 AGCCTCCTGCCCCATCAT 60.369 61.111 0.00 0.0 42.71 2.45 R
2128 5289 2.760634 TGCGAAACTCTGATAAGGCA 57.239 45.000 0.00 0.0 0.00 4.75 R
2605 6153 0.592637 CTTGAAACTGGCGTGCATGA 59.407 50.000 10.93 0.0 0.00 3.07 R
4045 7732 0.478072 TGCACTTGGATGGTTGTCCT 59.522 50.000 0.00 0.0 39.12 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.161295 TCCCTCGCGGATGCAAGG 62.161 66.667 6.13 3.93 45.43 3.61
23 24 4.845580 CTCGCGGATGCAAGGCCT 62.846 66.667 6.13 0.00 42.97 5.19
24 25 4.838152 TCGCGGATGCAAGGCCTC 62.838 66.667 5.23 0.00 42.97 4.70
26 27 4.496336 GCGGATGCAAGGCCTCCT 62.496 66.667 5.23 0.00 40.39 3.69
27 28 2.203126 CGGATGCAAGGCCTCCTC 60.203 66.667 5.23 0.00 40.39 3.71
28 29 3.001514 GGATGCAAGGCCTCCTCA 58.998 61.111 5.23 4.66 39.64 3.86
29 30 1.535685 GGATGCAAGGCCTCCTCAT 59.464 57.895 5.23 10.04 39.64 2.90
30 31 0.822532 GGATGCAAGGCCTCCTCATG 60.823 60.000 5.23 0.00 39.64 3.07
31 32 0.822532 GATGCAAGGCCTCCTCATGG 60.823 60.000 5.23 0.00 30.89 3.66
32 33 1.284111 ATGCAAGGCCTCCTCATGGA 61.284 55.000 5.23 0.61 40.69 3.41
45 46 4.871822 TCCTCATGGAGATGAACTAGTCA 58.128 43.478 0.00 0.00 38.17 3.41
46 47 4.646945 TCCTCATGGAGATGAACTAGTCAC 59.353 45.833 0.00 0.00 38.17 3.67
47 48 4.202202 CCTCATGGAGATGAACTAGTCACC 60.202 50.000 0.00 0.00 38.17 4.02
48 49 3.381590 TCATGGAGATGAACTAGTCACCG 59.618 47.826 0.00 0.00 39.72 4.94
49 50 2.803956 TGGAGATGAACTAGTCACCGT 58.196 47.619 0.00 0.00 39.72 4.83
50 51 3.162666 TGGAGATGAACTAGTCACCGTT 58.837 45.455 0.00 0.00 39.72 4.44
51 52 3.576982 TGGAGATGAACTAGTCACCGTTT 59.423 43.478 0.00 0.00 39.72 3.60
52 53 3.927142 GGAGATGAACTAGTCACCGTTTG 59.073 47.826 0.00 0.00 39.72 2.93
53 54 4.557205 GAGATGAACTAGTCACCGTTTGT 58.443 43.478 0.00 0.00 39.72 2.83
54 55 5.336213 GGAGATGAACTAGTCACCGTTTGTA 60.336 44.000 0.00 0.00 39.72 2.41
55 56 6.282199 AGATGAACTAGTCACCGTTTGTAT 57.718 37.500 0.00 0.00 39.72 2.29
56 57 6.331061 AGATGAACTAGTCACCGTTTGTATC 58.669 40.000 0.00 0.00 39.72 2.24
57 58 4.478699 TGAACTAGTCACCGTTTGTATCG 58.521 43.478 0.00 0.00 0.00 2.92
58 59 4.022935 TGAACTAGTCACCGTTTGTATCGT 60.023 41.667 0.00 0.00 0.00 3.73
59 60 4.088823 ACTAGTCACCGTTTGTATCGTC 57.911 45.455 0.00 0.00 0.00 4.20
60 61 2.358939 AGTCACCGTTTGTATCGTCC 57.641 50.000 0.00 0.00 0.00 4.79
61 62 0.986992 GTCACCGTTTGTATCGTCCG 59.013 55.000 0.00 0.00 0.00 4.79
62 63 0.597568 TCACCGTTTGTATCGTCCGT 59.402 50.000 0.00 0.00 0.00 4.69
63 64 1.000385 TCACCGTTTGTATCGTCCGTT 60.000 47.619 0.00 0.00 0.00 4.44
64 65 1.125384 CACCGTTTGTATCGTCCGTTG 59.875 52.381 0.00 0.00 0.00 4.10
65 66 1.269726 ACCGTTTGTATCGTCCGTTGT 60.270 47.619 0.00 0.00 0.00 3.32
66 67 1.794116 CCGTTTGTATCGTCCGTTGTT 59.206 47.619 0.00 0.00 0.00 2.83
67 68 2.410517 CCGTTTGTATCGTCCGTTGTTG 60.411 50.000 0.00 0.00 0.00 3.33
68 69 2.410517 CGTTTGTATCGTCCGTTGTTGG 60.411 50.000 0.00 0.00 0.00 3.77
69 70 2.801679 GTTTGTATCGTCCGTTGTTGGA 59.198 45.455 0.00 0.00 35.04 3.53
77 78 2.649531 TCCGTTGTTGGACTTTGGAT 57.350 45.000 0.00 0.00 31.53 3.41
78 79 2.500229 TCCGTTGTTGGACTTTGGATC 58.500 47.619 0.00 0.00 31.53 3.36
79 80 2.158740 TCCGTTGTTGGACTTTGGATCA 60.159 45.455 0.00 0.00 31.53 2.92
80 81 2.819608 CCGTTGTTGGACTTTGGATCAT 59.180 45.455 0.00 0.00 0.00 2.45
81 82 3.366273 CCGTTGTTGGACTTTGGATCATG 60.366 47.826 0.00 0.00 0.00 3.07
82 83 3.253188 CGTTGTTGGACTTTGGATCATGT 59.747 43.478 0.00 0.00 0.00 3.21
83 84 4.454161 CGTTGTTGGACTTTGGATCATGTA 59.546 41.667 0.00 0.00 0.00 2.29
84 85 5.123820 CGTTGTTGGACTTTGGATCATGTAT 59.876 40.000 0.00 0.00 0.00 2.29
85 86 6.555315 GTTGTTGGACTTTGGATCATGTATC 58.445 40.000 0.00 0.00 0.00 2.24
86 87 6.065976 TGTTGGACTTTGGATCATGTATCT 57.934 37.500 0.00 0.00 34.75 1.98
87 88 6.115446 TGTTGGACTTTGGATCATGTATCTC 58.885 40.000 0.00 0.00 34.75 2.75
88 89 6.070021 TGTTGGACTTTGGATCATGTATCTCT 60.070 38.462 0.00 0.00 34.75 3.10
89 90 7.125659 TGTTGGACTTTGGATCATGTATCTCTA 59.874 37.037 0.00 0.00 34.75 2.43
90 91 7.862274 TGGACTTTGGATCATGTATCTCTAT 57.138 36.000 0.00 0.00 34.75 1.98
91 92 7.674120 TGGACTTTGGATCATGTATCTCTATG 58.326 38.462 0.00 0.00 34.75 2.23
92 93 7.290948 TGGACTTTGGATCATGTATCTCTATGT 59.709 37.037 0.00 0.00 34.75 2.29
93 94 7.601886 GGACTTTGGATCATGTATCTCTATGTG 59.398 40.741 0.00 0.00 34.75 3.21
94 95 8.027524 ACTTTGGATCATGTATCTCTATGTGT 57.972 34.615 0.00 0.00 34.75 3.72
95 96 9.147732 ACTTTGGATCATGTATCTCTATGTGTA 57.852 33.333 0.00 0.00 34.75 2.90
99 100 8.462016 TGGATCATGTATCTCTATGTGTATTCG 58.538 37.037 0.00 0.00 34.75 3.34
100 101 7.918033 GGATCATGTATCTCTATGTGTATTCGG 59.082 40.741 0.00 0.00 34.75 4.30
101 102 7.996098 TCATGTATCTCTATGTGTATTCGGA 57.004 36.000 0.00 0.00 0.00 4.55
102 103 8.581253 TCATGTATCTCTATGTGTATTCGGAT 57.419 34.615 0.00 0.00 0.00 4.18
103 104 8.678199 TCATGTATCTCTATGTGTATTCGGATC 58.322 37.037 0.00 0.00 0.00 3.36
104 105 8.681806 CATGTATCTCTATGTGTATTCGGATCT 58.318 37.037 0.00 0.00 0.00 2.75
105 106 9.907229 ATGTATCTCTATGTGTATTCGGATCTA 57.093 33.333 0.00 0.00 0.00 1.98
106 107 9.384764 TGTATCTCTATGTGTATTCGGATCTAG 57.615 37.037 0.00 0.00 0.00 2.43
107 108 6.745159 TCTCTATGTGTATTCGGATCTAGC 57.255 41.667 0.00 0.00 0.00 3.42
108 109 6.238648 TCTCTATGTGTATTCGGATCTAGCA 58.761 40.000 0.00 0.00 0.00 3.49
109 110 6.149640 TCTCTATGTGTATTCGGATCTAGCAC 59.850 42.308 0.00 0.00 0.00 4.40
110 111 4.937201 ATGTGTATTCGGATCTAGCACA 57.063 40.909 0.00 0.00 39.25 4.57
111 112 4.937201 TGTGTATTCGGATCTAGCACAT 57.063 40.909 0.00 0.00 31.57 3.21
112 113 4.620982 TGTGTATTCGGATCTAGCACATG 58.379 43.478 0.00 0.00 31.57 3.21
113 114 4.099419 TGTGTATTCGGATCTAGCACATGT 59.901 41.667 0.00 0.00 31.57 3.21
114 115 4.445718 GTGTATTCGGATCTAGCACATGTG 59.554 45.833 21.83 21.83 0.00 3.21
115 116 3.827008 ATTCGGATCTAGCACATGTGT 57.173 42.857 26.01 15.36 0.00 3.72
131 132 6.638096 ACATGTGTGATCATTTCTTGTTGA 57.362 33.333 0.00 0.00 0.00 3.18
132 133 7.223260 ACATGTGTGATCATTTCTTGTTGAT 57.777 32.000 0.00 0.00 35.33 2.57
133 134 7.663827 ACATGTGTGATCATTTCTTGTTGATT 58.336 30.769 0.00 0.00 32.84 2.57
134 135 8.145767 ACATGTGTGATCATTTCTTGTTGATTT 58.854 29.630 0.00 0.00 32.84 2.17
135 136 7.933728 TGTGTGATCATTTCTTGTTGATTTG 57.066 32.000 0.00 0.00 32.84 2.32
136 137 7.714703 TGTGTGATCATTTCTTGTTGATTTGA 58.285 30.769 0.00 0.00 32.84 2.69
137 138 7.863877 TGTGTGATCATTTCTTGTTGATTTGAG 59.136 33.333 0.00 0.00 32.84 3.02
138 139 7.864379 GTGTGATCATTTCTTGTTGATTTGAGT 59.136 33.333 0.00 0.00 32.84 3.41
139 140 7.863877 TGTGATCATTTCTTGTTGATTTGAGTG 59.136 33.333 0.00 0.00 32.84 3.51
140 141 7.864379 GTGATCATTTCTTGTTGATTTGAGTGT 59.136 33.333 0.00 0.00 32.84 3.55
141 142 8.415553 TGATCATTTCTTGTTGATTTGAGTGTT 58.584 29.630 0.00 0.00 32.84 3.32
142 143 9.252962 GATCATTTCTTGTTGATTTGAGTGTTT 57.747 29.630 0.00 0.00 32.84 2.83
143 144 8.633075 TCATTTCTTGTTGATTTGAGTGTTTC 57.367 30.769 0.00 0.00 0.00 2.78
144 145 7.706179 TCATTTCTTGTTGATTTGAGTGTTTCC 59.294 33.333 0.00 0.00 0.00 3.13
145 146 6.773976 TTCTTGTTGATTTGAGTGTTTCCT 57.226 33.333 0.00 0.00 0.00 3.36
146 147 6.377327 TCTTGTTGATTTGAGTGTTTCCTC 57.623 37.500 0.00 0.00 0.00 3.71
147 148 6.122277 TCTTGTTGATTTGAGTGTTTCCTCT 58.878 36.000 0.00 0.00 32.50 3.69
148 149 6.260936 TCTTGTTGATTTGAGTGTTTCCTCTC 59.739 38.462 0.00 0.00 32.50 3.20
149 150 5.436175 TGTTGATTTGAGTGTTTCCTCTCA 58.564 37.500 0.00 0.00 38.94 3.27
150 151 5.885352 TGTTGATTTGAGTGTTTCCTCTCAA 59.115 36.000 3.91 3.91 44.93 3.02
151 152 6.547141 TGTTGATTTGAGTGTTTCCTCTCAAT 59.453 34.615 8.13 0.86 45.52 2.57
152 153 6.808008 TGATTTGAGTGTTTCCTCTCAATC 57.192 37.500 8.13 8.48 45.52 2.67
153 154 6.537355 TGATTTGAGTGTTTCCTCTCAATCT 58.463 36.000 8.13 0.94 45.52 2.40
154 155 6.652481 TGATTTGAGTGTTTCCTCTCAATCTC 59.348 38.462 8.13 8.75 45.52 2.75
155 156 4.543590 TGAGTGTTTCCTCTCAATCTCC 57.456 45.455 0.00 0.00 38.05 3.71
156 157 3.261897 TGAGTGTTTCCTCTCAATCTCCC 59.738 47.826 0.00 0.00 38.05 4.30
157 158 3.517500 GAGTGTTTCCTCTCAATCTCCCT 59.482 47.826 0.00 0.00 32.63 4.20
158 159 3.517500 AGTGTTTCCTCTCAATCTCCCTC 59.482 47.826 0.00 0.00 0.00 4.30
159 160 3.261897 GTGTTTCCTCTCAATCTCCCTCA 59.738 47.826 0.00 0.00 0.00 3.86
160 161 4.080638 GTGTTTCCTCTCAATCTCCCTCAT 60.081 45.833 0.00 0.00 0.00 2.90
161 162 4.537688 TGTTTCCTCTCAATCTCCCTCATT 59.462 41.667 0.00 0.00 0.00 2.57
162 163 5.014544 TGTTTCCTCTCAATCTCCCTCATTT 59.985 40.000 0.00 0.00 0.00 2.32
163 164 5.786121 TTCCTCTCAATCTCCCTCATTTT 57.214 39.130 0.00 0.00 0.00 1.82
164 165 5.786121 TCCTCTCAATCTCCCTCATTTTT 57.214 39.130 0.00 0.00 0.00 1.94
180 181 1.210870 TTTTTCCCTCGTGTTCGTCG 58.789 50.000 0.00 0.00 38.33 5.12
181 182 0.102844 TTTTCCCTCGTGTTCGTCGT 59.897 50.000 0.00 0.00 38.33 4.34
182 183 0.595567 TTTCCCTCGTGTTCGTCGTG 60.596 55.000 0.00 0.00 38.33 4.35
183 184 1.727511 TTCCCTCGTGTTCGTCGTGT 61.728 55.000 0.00 0.00 38.33 4.49
184 185 1.299620 CCCTCGTGTTCGTCGTGTT 60.300 57.895 0.00 0.00 38.33 3.32
185 186 1.273455 CCCTCGTGTTCGTCGTGTTC 61.273 60.000 0.00 0.00 38.33 3.18
186 187 0.317603 CCTCGTGTTCGTCGTGTTCT 60.318 55.000 0.00 0.00 38.33 3.01
187 188 1.474017 CTCGTGTTCGTCGTGTTCTT 58.526 50.000 0.00 0.00 38.33 2.52
188 189 1.447201 CTCGTGTTCGTCGTGTTCTTC 59.553 52.381 0.00 0.00 38.33 2.87
189 190 0.156035 CGTGTTCGTCGTGTTCTTCG 59.844 55.000 0.00 0.00 0.00 3.79
190 191 1.194495 GTGTTCGTCGTGTTCTTCGT 58.806 50.000 0.00 0.00 0.00 3.85
191 192 1.072348 GTGTTCGTCGTGTTCTTCGTG 60.072 52.381 0.00 0.00 0.00 4.35
192 193 0.501435 GTTCGTCGTGTTCTTCGTGG 59.499 55.000 0.00 0.00 0.00 4.94
193 194 0.595567 TTCGTCGTGTTCTTCGTGGG 60.596 55.000 0.00 0.00 0.00 4.61
194 195 1.008194 CGTCGTGTTCTTCGTGGGA 60.008 57.895 0.00 0.00 0.00 4.37
195 196 0.388134 CGTCGTGTTCTTCGTGGGAT 60.388 55.000 0.00 0.00 0.00 3.85
196 197 1.347320 GTCGTGTTCTTCGTGGGATC 58.653 55.000 0.00 0.00 0.00 3.36
197 198 0.245539 TCGTGTTCTTCGTGGGATCC 59.754 55.000 1.92 1.92 0.00 3.36
198 199 0.739813 CGTGTTCTTCGTGGGATCCC 60.740 60.000 25.22 25.22 0.00 3.85
199 200 0.392595 GTGTTCTTCGTGGGATCCCC 60.393 60.000 28.58 17.75 45.71 4.81
200 201 0.546747 TGTTCTTCGTGGGATCCCCT 60.547 55.000 28.58 0.00 45.70 4.79
201 202 0.178301 GTTCTTCGTGGGATCCCCTC 59.822 60.000 28.58 19.12 45.70 4.30
202 203 0.981277 TTCTTCGTGGGATCCCCTCC 60.981 60.000 28.58 14.62 45.70 4.30
203 204 1.689233 CTTCGTGGGATCCCCTCCA 60.689 63.158 28.58 6.36 46.98 3.86
204 205 1.229690 TTCGTGGGATCCCCTCCAA 60.230 57.895 28.58 13.01 46.98 3.53
205 206 0.842905 TTCGTGGGATCCCCTCCAAA 60.843 55.000 28.58 12.12 46.98 3.28
206 207 0.623324 TCGTGGGATCCCCTCCAAAT 60.623 55.000 28.58 0.00 46.98 2.32
207 208 0.179018 CGTGGGATCCCCTCCAAATC 60.179 60.000 28.58 7.19 46.98 2.17
208 209 0.179018 GTGGGATCCCCTCCAAATCG 60.179 60.000 28.58 0.00 46.98 3.34
209 210 0.623324 TGGGATCCCCTCCAAATCGT 60.623 55.000 28.58 0.00 46.98 3.73
210 211 0.179018 GGGATCCCCTCCAAATCGTG 60.179 60.000 21.42 0.00 46.98 4.35
211 212 0.837272 GGATCCCCTCCAAATCGTGA 59.163 55.000 0.00 0.00 44.26 4.35
212 213 1.211949 GGATCCCCTCCAAATCGTGAA 59.788 52.381 0.00 0.00 44.26 3.18
213 214 2.356741 GGATCCCCTCCAAATCGTGAAA 60.357 50.000 0.00 0.00 44.26 2.69
214 215 2.489938 TCCCCTCCAAATCGTGAAAG 57.510 50.000 0.00 0.00 0.00 2.62
215 216 1.982226 TCCCCTCCAAATCGTGAAAGA 59.018 47.619 0.00 0.00 0.00 2.52
216 217 2.576191 TCCCCTCCAAATCGTGAAAGAT 59.424 45.455 0.00 0.00 0.00 2.40
217 218 2.945668 CCCCTCCAAATCGTGAAAGATC 59.054 50.000 0.00 0.00 0.00 2.75
218 219 2.609459 CCCTCCAAATCGTGAAAGATCG 59.391 50.000 0.00 0.00 0.00 3.69
219 220 2.609459 CCTCCAAATCGTGAAAGATCGG 59.391 50.000 0.00 0.00 0.00 4.18
220 221 3.521560 CTCCAAATCGTGAAAGATCGGA 58.478 45.455 0.00 0.00 0.00 4.55
221 222 3.259064 TCCAAATCGTGAAAGATCGGAC 58.741 45.455 0.00 0.00 0.00 4.79
222 223 2.351726 CCAAATCGTGAAAGATCGGACC 59.648 50.000 0.00 0.00 0.00 4.46
223 224 3.262420 CAAATCGTGAAAGATCGGACCT 58.738 45.455 0.00 0.00 0.00 3.85
224 225 4.430007 CAAATCGTGAAAGATCGGACCTA 58.570 43.478 0.00 0.00 0.00 3.08
225 226 3.992260 ATCGTGAAAGATCGGACCTAG 57.008 47.619 0.00 0.00 0.00 3.02
226 227 2.022195 TCGTGAAAGATCGGACCTAGG 58.978 52.381 7.41 7.41 0.00 3.02
227 228 1.067212 CGTGAAAGATCGGACCTAGGG 59.933 57.143 14.81 0.00 0.00 3.53
228 229 2.108970 GTGAAAGATCGGACCTAGGGT 58.891 52.381 14.81 0.00 39.44 4.34
229 230 2.500504 GTGAAAGATCGGACCTAGGGTT 59.499 50.000 14.81 0.00 35.25 4.11
230 231 3.055312 GTGAAAGATCGGACCTAGGGTTT 60.055 47.826 14.81 0.95 35.25 3.27
231 232 3.197116 TGAAAGATCGGACCTAGGGTTTC 59.803 47.826 14.81 10.11 35.25 2.78
232 233 1.790818 AGATCGGACCTAGGGTTTCC 58.209 55.000 14.81 10.29 35.25 3.13
233 234 1.007963 AGATCGGACCTAGGGTTTCCA 59.992 52.381 14.81 2.99 35.25 3.53
234 235 1.138464 GATCGGACCTAGGGTTTCCAC 59.862 57.143 14.81 2.40 35.25 4.02
235 236 0.906282 TCGGACCTAGGGTTTCCACC 60.906 60.000 14.81 3.94 43.37 4.61
246 247 3.434940 GGTTTCCACCCTACATCACTT 57.565 47.619 0.00 0.00 37.03 3.16
247 248 3.344515 GGTTTCCACCCTACATCACTTC 58.655 50.000 0.00 0.00 37.03 3.01
248 249 3.009143 GGTTTCCACCCTACATCACTTCT 59.991 47.826 0.00 0.00 37.03 2.85
249 250 4.506802 GGTTTCCACCCTACATCACTTCTT 60.507 45.833 0.00 0.00 37.03 2.52
250 251 3.981071 TCCACCCTACATCACTTCTTG 57.019 47.619 0.00 0.00 0.00 3.02
251 252 3.248024 TCCACCCTACATCACTTCTTGT 58.752 45.455 0.00 0.00 0.00 3.16
252 253 3.260884 TCCACCCTACATCACTTCTTGTC 59.739 47.826 0.00 0.00 0.00 3.18
253 254 3.600388 CACCCTACATCACTTCTTGTCC 58.400 50.000 0.00 0.00 0.00 4.02
254 255 3.261897 CACCCTACATCACTTCTTGTCCT 59.738 47.826 0.00 0.00 0.00 3.85
255 256 3.515901 ACCCTACATCACTTCTTGTCCTC 59.484 47.826 0.00 0.00 0.00 3.71
256 257 3.772025 CCCTACATCACTTCTTGTCCTCT 59.228 47.826 0.00 0.00 0.00 3.69
257 258 4.956700 CCCTACATCACTTCTTGTCCTCTA 59.043 45.833 0.00 0.00 0.00 2.43
258 259 5.422331 CCCTACATCACTTCTTGTCCTCTAA 59.578 44.000 0.00 0.00 0.00 2.10
259 260 6.406400 CCCTACATCACTTCTTGTCCTCTAAG 60.406 46.154 0.00 0.00 0.00 2.18
260 261 6.153680 CCTACATCACTTCTTGTCCTCTAAGT 59.846 42.308 0.00 0.00 32.52 2.24
261 262 6.031751 ACATCACTTCTTGTCCTCTAAGTC 57.968 41.667 0.00 0.00 29.93 3.01
262 263 5.777732 ACATCACTTCTTGTCCTCTAAGTCT 59.222 40.000 0.00 0.00 29.93 3.24
263 264 6.268847 ACATCACTTCTTGTCCTCTAAGTCTT 59.731 38.462 0.00 0.00 29.93 3.01
264 265 6.090483 TCACTTCTTGTCCTCTAAGTCTTG 57.910 41.667 0.00 0.00 29.93 3.02
265 266 5.598830 TCACTTCTTGTCCTCTAAGTCTTGT 59.401 40.000 0.00 0.00 29.93 3.16
266 267 6.776116 TCACTTCTTGTCCTCTAAGTCTTGTA 59.224 38.462 0.00 0.00 29.93 2.41
267 268 7.451877 TCACTTCTTGTCCTCTAAGTCTTGTAT 59.548 37.037 0.00 0.00 29.93 2.29
268 269 8.091449 CACTTCTTGTCCTCTAAGTCTTGTATT 58.909 37.037 0.00 0.00 29.93 1.89
269 270 8.652290 ACTTCTTGTCCTCTAAGTCTTGTATTT 58.348 33.333 0.00 0.00 0.00 1.40
270 271 9.495572 CTTCTTGTCCTCTAAGTCTTGTATTTT 57.504 33.333 0.00 0.00 0.00 1.82
271 272 9.847224 TTCTTGTCCTCTAAGTCTTGTATTTTT 57.153 29.630 0.00 0.00 0.00 1.94
355 356 7.044181 TGCAAGTCAACCATTTAAATGTTTGA 58.956 30.769 27.60 27.60 42.89 2.69
401 421 5.149273 CAACATCTGCAATACACACTTGTC 58.851 41.667 0.00 0.00 37.15 3.18
403 423 5.005740 ACATCTGCAATACACACTTGTCAT 58.994 37.500 0.00 0.00 37.15 3.06
404 424 5.106436 ACATCTGCAATACACACTTGTCATG 60.106 40.000 0.00 0.00 37.15 3.07
411 431 6.492254 CAATACACACTTGTCATGATGGATG 58.508 40.000 0.00 0.00 37.15 3.51
413 433 4.259356 ACACACTTGTCATGATGGATGAG 58.741 43.478 0.00 0.00 42.00 2.90
422 442 9.886132 CTTGTCATGATGGATGAGATGATATAA 57.114 33.333 0.00 0.00 42.00 0.98
532 552 8.874744 TTGCAAATTTTTGTAGGTAGTTTACC 57.125 30.769 0.00 0.00 43.31 2.85
533 553 8.008513 TGCAAATTTTTGTAGGTAGTTTACCA 57.991 30.769 7.92 0.00 44.31 3.25
534 554 8.475639 TGCAAATTTTTGTAGGTAGTTTACCAA 58.524 29.630 7.92 0.00 44.31 3.67
535 555 8.974408 GCAAATTTTTGTAGGTAGTTTACCAAG 58.026 33.333 7.92 0.00 44.31 3.61
536 556 8.974408 CAAATTTTTGTAGGTAGTTTACCAAGC 58.026 33.333 7.92 0.00 40.97 4.01
543 563 3.927552 GTAGTTTACCAAGCTGATCGC 57.072 47.619 0.00 1.92 39.57 4.58
600 3714 9.530633 GAAACGGAGAGAGTACAATAATACATT 57.469 33.333 0.00 0.00 0.00 2.71
603 3717 8.136165 ACGGAGAGAGTACAATAATACATTCAC 58.864 37.037 0.00 0.00 0.00 3.18
605 3719 8.643324 GGAGAGAGTACAATAATACATTCACCT 58.357 37.037 0.00 0.00 0.00 4.00
607 3721 8.353684 AGAGAGTACAATAATACATTCACCTCG 58.646 37.037 0.00 0.00 0.00 4.63
609 3723 8.136165 AGAGTACAATAATACATTCACCTCGTC 58.864 37.037 0.00 0.00 0.00 4.20
611 3725 8.421784 AGTACAATAATACATTCACCTCGTCAT 58.578 33.333 0.00 0.00 0.00 3.06
621 3736 2.168521 TCACCTCGTCATCCAATCCTTC 59.831 50.000 0.00 0.00 0.00 3.46
625 3740 3.492309 CCTCGTCATCCAATCCTTCTCTG 60.492 52.174 0.00 0.00 0.00 3.35
644 3759 0.955428 GTTCCTTGACGGCTGATGCA 60.955 55.000 0.00 0.00 41.91 3.96
664 3779 3.860641 CATATGTTTTTGTTCCCTGGGC 58.139 45.455 8.22 0.00 0.00 5.36
671 3786 4.748144 GTTCCCTGGGCTGGCCAG 62.748 72.222 35.95 35.95 37.98 4.85
781 3897 3.806949 TTTTAGAGGAGTGGGCATTGT 57.193 42.857 0.00 0.00 0.00 2.71
791 3907 2.566724 AGTGGGCATTGTGGTAATTTGG 59.433 45.455 0.00 0.00 0.00 3.28
808 3924 0.468648 TGGCGTATCTCTCTCCTCGA 59.531 55.000 0.00 0.00 0.00 4.04
811 3927 2.147958 GCGTATCTCTCTCCTCGATGT 58.852 52.381 0.00 0.00 0.00 3.06
856 3973 1.686325 ATACCCCACGATTCGCTGCT 61.686 55.000 5.86 0.00 0.00 4.24
949 4077 3.414193 CATGCCAGCTCCTCCCCA 61.414 66.667 0.00 0.00 0.00 4.96
950 4078 3.415087 ATGCCAGCTCCTCCCCAC 61.415 66.667 0.00 0.00 0.00 4.61
951 4079 3.958629 ATGCCAGCTCCTCCCCACT 62.959 63.158 0.00 0.00 0.00 4.00
970 4098 1.199097 CTCCATTACCGCACCAAACAC 59.801 52.381 0.00 0.00 0.00 3.32
977 4105 1.821759 CGCACCAAACACCCTCACA 60.822 57.895 0.00 0.00 0.00 3.58
978 4106 1.380403 CGCACCAAACACCCTCACAA 61.380 55.000 0.00 0.00 0.00 3.33
991 4119 3.794242 CACAACGCGCCGCCATTA 61.794 61.111 5.73 0.00 0.00 1.90
1097 4243 4.335647 GCCGGCGATGGGGATGAT 62.336 66.667 12.58 0.00 0.00 2.45
1098 4244 2.359107 CCGGCGATGGGGATGATG 60.359 66.667 9.30 0.00 0.00 3.07
1099 4245 3.052082 CGGCGATGGGGATGATGC 61.052 66.667 0.00 0.00 0.00 3.91
1100 4246 2.674380 GGCGATGGGGATGATGCC 60.674 66.667 0.00 0.00 35.04 4.40
1101 4247 3.052082 GCGATGGGGATGATGCCG 61.052 66.667 0.00 0.00 0.00 5.69
1102 4248 2.743060 CGATGGGGATGATGCCGA 59.257 61.111 0.00 0.00 0.00 5.54
1103 4249 1.297689 CGATGGGGATGATGCCGAT 59.702 57.895 0.00 0.00 0.00 4.18
1104 4250 1.022982 CGATGGGGATGATGCCGATG 61.023 60.000 5.02 0.00 0.00 3.84
1105 4251 0.325933 GATGGGGATGATGCCGATGA 59.674 55.000 5.02 0.00 0.00 2.92
1106 4252 0.997363 ATGGGGATGATGCCGATGAT 59.003 50.000 0.00 0.00 0.00 2.45
1107 4253 0.037160 TGGGGATGATGCCGATGATG 59.963 55.000 0.00 0.00 0.00 3.07
1108 4254 0.679002 GGGGATGATGCCGATGATGG 60.679 60.000 0.00 0.00 0.00 3.51
1109 4255 0.679002 GGGATGATGCCGATGATGGG 60.679 60.000 0.00 0.00 0.00 4.00
1110 4256 0.679002 GGATGATGCCGATGATGGGG 60.679 60.000 0.00 0.00 0.00 4.96
1336 4488 0.250513 GATGTTCCCGCTCCTCAACT 59.749 55.000 0.00 0.00 0.00 3.16
1377 4535 0.826672 ACGTCTCTGGGTTCGACCTT 60.827 55.000 4.41 0.00 38.64 3.50
1698 4856 3.634202 CTGGAGATCTTCCCGCCA 58.366 61.111 0.00 0.00 46.19 5.69
2128 5289 0.034574 TTTGTGTGCACCACCTCAGT 60.035 50.000 15.69 0.00 43.85 3.41
2281 5829 7.253422 ACCAGATCTTCAATTTAATTTCAGCG 58.747 34.615 0.00 0.00 0.00 5.18
2502 6050 9.065798 TCATGTTCAGTTTTCACTCAATTATCA 57.934 29.630 0.00 0.00 0.00 2.15
2605 6153 2.368548 TGTGTAGAGTTGTGGATGCACT 59.631 45.455 18.75 0.00 0.00 4.40
2606 6154 2.996621 GTGTAGAGTTGTGGATGCACTC 59.003 50.000 18.75 11.28 0.00 3.51
2607 6155 2.632512 TGTAGAGTTGTGGATGCACTCA 59.367 45.455 18.75 2.27 0.00 3.41
2608 6156 3.261643 TGTAGAGTTGTGGATGCACTCAT 59.738 43.478 18.75 3.77 35.17 2.90
2609 6157 2.708051 AGAGTTGTGGATGCACTCATG 58.292 47.619 18.75 0.00 31.96 3.07
2686 6234 3.495100 CCTTGGTCTGTCTAGCTTTGTGT 60.495 47.826 0.00 0.00 0.00 3.72
2691 6239 6.296026 TGGTCTGTCTAGCTTTGTGTTTTAT 58.704 36.000 0.00 0.00 0.00 1.40
2805 6353 7.760340 GGCTACTGAATTTATATTCCTAGGACG 59.240 40.741 12.22 0.00 39.56 4.79
3227 6895 7.035840 GAGCATGAATGATCTGTTATGGTTT 57.964 36.000 0.00 0.00 39.92 3.27
3273 6942 3.580458 AGCATGAGTGGTACTTCTTGTCT 59.420 43.478 0.00 0.00 33.52 3.41
3274 6943 3.929610 GCATGAGTGGTACTTCTTGTCTC 59.070 47.826 0.00 0.00 0.00 3.36
3275 6944 4.561530 GCATGAGTGGTACTTCTTGTCTCA 60.562 45.833 0.00 0.00 35.47 3.27
3276 6945 4.585955 TGAGTGGTACTTCTTGTCTCAC 57.414 45.455 0.00 0.00 34.30 3.51
3277 6946 4.215908 TGAGTGGTACTTCTTGTCTCACT 58.784 43.478 0.00 0.00 41.38 3.41
3278 6947 5.382616 TGAGTGGTACTTCTTGTCTCACTA 58.617 41.667 0.00 0.00 39.97 2.74
3279 6948 6.010850 TGAGTGGTACTTCTTGTCTCACTAT 58.989 40.000 0.00 0.00 39.97 2.12
3280 6949 6.071896 TGAGTGGTACTTCTTGTCTCACTATG 60.072 42.308 0.00 0.00 39.97 2.23
3297 6966 6.051074 TCACTATGTGCATAGAATTCACCAG 58.949 40.000 21.81 0.74 42.55 4.00
3512 7181 0.037303 ACCCTCTGACTCCGACGTTA 59.963 55.000 0.00 0.00 0.00 3.18
3622 7292 6.287589 TCTCTTAGACCTCTGAATTTCACC 57.712 41.667 0.00 0.00 0.00 4.02
3758 7428 3.570212 AGGCCCGGTCTTGTGCTT 61.570 61.111 0.00 0.00 0.00 3.91
3866 7536 0.466922 AGGCTGAGGTATGGCATTGC 60.467 55.000 4.78 0.00 0.00 3.56
3868 7538 0.383231 GCTGAGGTATGGCATTGCAC 59.617 55.000 4.78 0.00 0.00 4.57
3873 7543 1.005805 AGGTATGGCATTGCACTCCAA 59.994 47.619 4.78 0.00 37.94 3.53
3885 7555 1.538204 GCACTCCAAGTCTGTCGTCAA 60.538 52.381 0.00 0.00 0.00 3.18
3886 7556 2.398498 CACTCCAAGTCTGTCGTCAAG 58.602 52.381 0.00 0.00 0.00 3.02
3890 7560 3.869065 TCCAAGTCTGTCGTCAAGTTTT 58.131 40.909 0.00 0.00 0.00 2.43
3904 7574 7.272515 GTCGTCAAGTTTTCAGAAACAATGAAA 59.727 33.333 0.00 0.00 46.01 2.69
4006 7686 0.326264 AGGCGGTTCTCTTGCAATCT 59.674 50.000 0.00 0.00 0.00 2.40
4009 7689 0.449388 CGGTTCTCTTGCAATCTGCC 59.551 55.000 0.00 0.00 44.23 4.85
4012 7692 0.324614 TTCTCTTGCAATCTGCCGGA 59.675 50.000 5.05 0.00 44.23 5.14
4038 7725 1.528542 CCGCGATGTAGGAGGGAGA 60.529 63.158 8.23 0.00 0.00 3.71
4044 7731 1.783979 GATGTAGGAGGGAGAGAGGGA 59.216 57.143 0.00 0.00 0.00 4.20
4045 7732 1.695065 TGTAGGAGGGAGAGAGGGAA 58.305 55.000 0.00 0.00 0.00 3.97
4046 7733 1.571457 TGTAGGAGGGAGAGAGGGAAG 59.429 57.143 0.00 0.00 0.00 3.46
4047 7734 1.133294 GTAGGAGGGAGAGAGGGAAGG 60.133 61.905 0.00 0.00 0.00 3.46
4048 7735 0.556380 AGGAGGGAGAGAGGGAAGGA 60.556 60.000 0.00 0.00 0.00 3.36
4051 7738 0.793617 AGGGAGAGAGGGAAGGACAA 59.206 55.000 0.00 0.00 0.00 3.18
4055 7742 2.192263 GAGAGAGGGAAGGACAACCAT 58.808 52.381 0.00 0.00 38.94 3.55
4084 7777 6.437162 AGTGCAGAGGATAGATCTAAGGAATC 59.563 42.308 6.52 0.00 0.00 2.52
4127 7837 4.995487 GGTGTTTTACCTTGAGTAGTCTGG 59.005 45.833 0.00 4.14 46.51 3.86
4132 7842 3.261818 ACCTTGAGTAGTCTGGAACCT 57.738 47.619 14.32 0.00 0.00 3.50
4344 8063 1.464189 GCGATGTTTTTCTGGCGTCTC 60.464 52.381 0.00 0.00 0.00 3.36
4347 8066 0.944386 TGTTTTTCTGGCGTCTCTGC 59.056 50.000 0.00 0.00 0.00 4.26
4430 8149 2.425143 AGCACAGAGAGAGAGAGAGG 57.575 55.000 0.00 0.00 0.00 3.69
4431 8150 1.064463 AGCACAGAGAGAGAGAGAGGG 60.064 57.143 0.00 0.00 0.00 4.30
4432 8151 1.064758 GCACAGAGAGAGAGAGAGGGA 60.065 57.143 0.00 0.00 0.00 4.20
4433 8152 2.923121 CACAGAGAGAGAGAGAGGGAG 58.077 57.143 0.00 0.00 0.00 4.30
4541 8260 4.237724 GTTTCCAATCAAAGCTTGCTACC 58.762 43.478 0.00 0.00 0.00 3.18
4542 8261 3.153369 TCCAATCAAAGCTTGCTACCA 57.847 42.857 0.00 0.00 0.00 3.25
4543 8262 3.084039 TCCAATCAAAGCTTGCTACCAG 58.916 45.455 0.00 0.00 0.00 4.00
4623 8352 2.354510 CCGCGCCAATTAATTTCTGAGA 59.645 45.455 0.00 0.00 0.00 3.27
4744 8473 4.511826 CCTTGACCTTCTGTGTAACTCAAC 59.488 45.833 0.00 0.00 38.04 3.18
4746 8475 3.057734 GACCTTCTGTGTAACTCAACCG 58.942 50.000 0.00 0.00 38.04 4.44
4747 8476 2.696707 ACCTTCTGTGTAACTCAACCGA 59.303 45.455 0.00 0.00 38.04 4.69
4751 8480 5.238650 CCTTCTGTGTAACTCAACCGAAAAT 59.761 40.000 0.00 0.00 38.04 1.82
4792 8528 5.518848 TGTCACTCGTTACTTGTTCCTTA 57.481 39.130 0.00 0.00 0.00 2.69
4853 8589 5.333513 CGATCCAACACTACTCAAGACTAC 58.666 45.833 0.00 0.00 0.00 2.73
4868 8604 3.532102 AGACTACAACCCTCCAAAGGAT 58.468 45.455 0.00 0.00 46.67 3.24
4869 8605 4.695606 AGACTACAACCCTCCAAAGGATA 58.304 43.478 0.00 0.00 46.67 2.59
4870 8606 5.289510 AGACTACAACCCTCCAAAGGATAT 58.710 41.667 0.00 0.00 46.67 1.63
4871 8607 6.449956 AGACTACAACCCTCCAAAGGATATA 58.550 40.000 0.00 0.00 46.67 0.86
4872 8608 7.082972 AGACTACAACCCTCCAAAGGATATAT 58.917 38.462 0.00 0.00 46.67 0.86
4873 8609 8.239478 AGACTACAACCCTCCAAAGGATATATA 58.761 37.037 0.00 0.00 46.67 0.86
4874 8610 8.808240 ACTACAACCCTCCAAAGGATATATAA 57.192 34.615 0.00 0.00 46.67 0.98
4875 8611 8.657712 ACTACAACCCTCCAAAGGATATATAAC 58.342 37.037 0.00 0.00 46.67 1.89
4876 8612 6.849151 ACAACCCTCCAAAGGATATATAACC 58.151 40.000 0.75 0.75 46.67 2.85
4877 8613 6.183361 ACAACCCTCCAAAGGATATATAACCC 60.183 42.308 5.46 1.46 46.67 4.11
4878 8614 4.856182 ACCCTCCAAAGGATATATAACCCC 59.144 45.833 5.46 0.00 46.67 4.95
4879 8615 4.229812 CCCTCCAAAGGATATATAACCCCC 59.770 50.000 5.46 0.00 46.67 5.40
4963 8703 6.382869 AAACTGTTCTCTTCATGTTCCAAG 57.617 37.500 0.00 0.00 0.00 3.61
4979 8719 1.028905 CAAGACGCCAAAAAGTCCCA 58.971 50.000 0.00 0.00 38.08 4.37
5021 8762 2.035961 GAGCAGATATTGAGCACCCGTA 59.964 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.838152 GAGGCCTTGCATCCGCGA 62.838 66.667 6.77 0.00 42.97 5.87
12 13 0.822532 CCATGAGGAGGCCTTGCATC 60.823 60.000 6.77 2.26 38.72 3.91
13 14 1.229359 CCATGAGGAGGCCTTGCAT 59.771 57.895 6.77 8.48 36.89 3.96
14 15 1.924939 TCCATGAGGAGGCCTTGCA 60.925 57.895 6.77 6.11 39.61 4.08
15 16 3.001514 TCCATGAGGAGGCCTTGC 58.998 61.111 6.77 0.00 39.61 4.01
23 24 4.646945 GTGACTAGTTCATCTCCATGAGGA 59.353 45.833 0.00 0.00 40.28 3.71
24 25 4.202202 GGTGACTAGTTCATCTCCATGAGG 60.202 50.000 0.00 0.00 40.28 3.86
25 26 4.498850 CGGTGACTAGTTCATCTCCATGAG 60.499 50.000 0.00 0.00 40.28 2.90
26 27 3.381590 CGGTGACTAGTTCATCTCCATGA 59.618 47.826 0.00 0.00 36.32 3.07
27 28 3.131223 ACGGTGACTAGTTCATCTCCATG 59.869 47.826 0.00 0.00 36.32 3.66
28 29 3.366396 ACGGTGACTAGTTCATCTCCAT 58.634 45.455 0.00 0.00 36.32 3.41
29 30 2.803956 ACGGTGACTAGTTCATCTCCA 58.196 47.619 0.00 0.00 36.32 3.86
30 31 3.870633 AACGGTGACTAGTTCATCTCC 57.129 47.619 0.00 0.00 36.32 3.71
31 32 4.557205 ACAAACGGTGACTAGTTCATCTC 58.443 43.478 0.00 0.00 36.32 2.75
32 33 4.602340 ACAAACGGTGACTAGTTCATCT 57.398 40.909 0.00 0.00 36.32 2.90
33 34 5.229469 CGATACAAACGGTGACTAGTTCATC 59.771 44.000 0.00 0.00 36.32 2.92
34 35 5.100259 CGATACAAACGGTGACTAGTTCAT 58.900 41.667 0.00 0.00 36.32 2.57
35 36 4.022935 ACGATACAAACGGTGACTAGTTCA 60.023 41.667 0.00 0.00 34.93 3.18
36 37 4.479619 ACGATACAAACGGTGACTAGTTC 58.520 43.478 0.00 0.00 34.93 3.01
37 38 4.479619 GACGATACAAACGGTGACTAGTT 58.520 43.478 0.00 0.00 34.93 2.24
38 39 3.119708 GGACGATACAAACGGTGACTAGT 60.120 47.826 0.00 0.00 34.93 2.57
39 40 3.432782 GGACGATACAAACGGTGACTAG 58.567 50.000 0.00 0.00 34.93 2.57
40 41 2.159531 CGGACGATACAAACGGTGACTA 60.160 50.000 0.00 0.00 34.93 2.59
41 42 1.401931 CGGACGATACAAACGGTGACT 60.402 52.381 0.00 0.00 34.93 3.41
42 43 0.986992 CGGACGATACAAACGGTGAC 59.013 55.000 0.00 0.00 34.93 3.67
43 44 0.597568 ACGGACGATACAAACGGTGA 59.402 50.000 0.00 0.00 34.93 4.02
44 45 1.125384 CAACGGACGATACAAACGGTG 59.875 52.381 0.00 0.00 35.86 4.94
45 46 1.269726 ACAACGGACGATACAAACGGT 60.270 47.619 0.00 0.00 34.93 4.83
46 47 1.421382 ACAACGGACGATACAAACGG 58.579 50.000 0.00 0.00 34.93 4.44
47 48 2.410517 CCAACAACGGACGATACAAACG 60.411 50.000 0.00 0.00 0.00 3.60
48 49 2.801679 TCCAACAACGGACGATACAAAC 59.198 45.455 0.00 0.00 0.00 2.93
49 50 2.801679 GTCCAACAACGGACGATACAAA 59.198 45.455 0.00 0.00 45.77 2.83
50 51 2.406130 GTCCAACAACGGACGATACAA 58.594 47.619 0.00 0.00 45.77 2.41
51 52 2.068837 GTCCAACAACGGACGATACA 57.931 50.000 0.00 0.00 45.77 2.29
58 59 2.158740 TGATCCAAAGTCCAACAACGGA 60.159 45.455 0.00 0.00 0.00 4.69
59 60 2.226330 TGATCCAAAGTCCAACAACGG 58.774 47.619 0.00 0.00 0.00 4.44
60 61 3.253188 ACATGATCCAAAGTCCAACAACG 59.747 43.478 0.00 0.00 0.00 4.10
61 62 4.853924 ACATGATCCAAAGTCCAACAAC 57.146 40.909 0.00 0.00 0.00 3.32
62 63 6.484288 AGATACATGATCCAAAGTCCAACAA 58.516 36.000 0.00 0.00 34.80 2.83
63 64 6.065976 AGATACATGATCCAAAGTCCAACA 57.934 37.500 0.00 0.00 34.80 3.33
64 65 6.352516 AGAGATACATGATCCAAAGTCCAAC 58.647 40.000 0.00 0.00 34.80 3.77
65 66 6.566079 AGAGATACATGATCCAAAGTCCAA 57.434 37.500 0.00 0.00 34.80 3.53
66 67 7.290948 ACATAGAGATACATGATCCAAAGTCCA 59.709 37.037 0.00 0.00 34.80 4.02
67 68 7.601886 CACATAGAGATACATGATCCAAAGTCC 59.398 40.741 0.00 0.00 34.80 3.85
68 69 8.147058 ACACATAGAGATACATGATCCAAAGTC 58.853 37.037 0.00 0.00 34.80 3.01
69 70 8.027524 ACACATAGAGATACATGATCCAAAGT 57.972 34.615 0.00 0.00 34.80 2.66
73 74 8.462016 CGAATACACATAGAGATACATGATCCA 58.538 37.037 0.00 0.00 34.80 3.41
74 75 7.918033 CCGAATACACATAGAGATACATGATCC 59.082 40.741 0.00 0.00 34.80 3.36
75 76 8.678199 TCCGAATACACATAGAGATACATGATC 58.322 37.037 0.00 0.00 34.40 2.92
76 77 8.581253 TCCGAATACACATAGAGATACATGAT 57.419 34.615 0.00 0.00 0.00 2.45
77 78 7.996098 TCCGAATACACATAGAGATACATGA 57.004 36.000 0.00 0.00 0.00 3.07
78 79 8.681806 AGATCCGAATACACATAGAGATACATG 58.318 37.037 0.00 0.00 0.00 3.21
79 80 8.815565 AGATCCGAATACACATAGAGATACAT 57.184 34.615 0.00 0.00 0.00 2.29
80 81 9.384764 CTAGATCCGAATACACATAGAGATACA 57.615 37.037 0.00 0.00 0.00 2.29
81 82 8.339714 GCTAGATCCGAATACACATAGAGATAC 58.660 40.741 0.00 0.00 0.00 2.24
82 83 8.047310 TGCTAGATCCGAATACACATAGAGATA 58.953 37.037 0.00 0.00 0.00 1.98
83 84 6.887002 TGCTAGATCCGAATACACATAGAGAT 59.113 38.462 0.00 0.00 0.00 2.75
84 85 6.149640 GTGCTAGATCCGAATACACATAGAGA 59.850 42.308 0.00 0.00 0.00 3.10
85 86 6.072452 TGTGCTAGATCCGAATACACATAGAG 60.072 42.308 0.00 0.00 32.06 2.43
86 87 5.768164 TGTGCTAGATCCGAATACACATAGA 59.232 40.000 0.00 0.00 32.06 1.98
87 88 6.013842 TGTGCTAGATCCGAATACACATAG 57.986 41.667 0.00 0.00 32.06 2.23
88 89 6.015434 ACATGTGCTAGATCCGAATACACATA 60.015 38.462 0.00 0.00 43.36 2.29
89 90 4.937201 TGTGCTAGATCCGAATACACAT 57.063 40.909 0.00 0.00 32.06 3.21
90 91 4.099419 ACATGTGCTAGATCCGAATACACA 59.901 41.667 0.00 0.00 40.45 3.72
91 92 4.445718 CACATGTGCTAGATCCGAATACAC 59.554 45.833 13.94 0.00 0.00 2.90
92 93 4.099419 ACACATGTGCTAGATCCGAATACA 59.901 41.667 25.68 0.00 0.00 2.29
93 94 4.445718 CACACATGTGCTAGATCCGAATAC 59.554 45.833 25.68 0.00 39.39 1.89
94 95 4.340950 TCACACATGTGCTAGATCCGAATA 59.659 41.667 25.68 0.00 45.25 1.75
95 96 3.132824 TCACACATGTGCTAGATCCGAAT 59.867 43.478 25.68 0.00 45.25 3.34
96 97 2.495669 TCACACATGTGCTAGATCCGAA 59.504 45.455 25.68 0.00 45.25 4.30
97 98 2.099405 TCACACATGTGCTAGATCCGA 58.901 47.619 25.68 6.72 45.25 4.55
98 99 2.584492 TCACACATGTGCTAGATCCG 57.416 50.000 25.68 4.54 45.25 4.18
99 100 4.063998 TGATCACACATGTGCTAGATCC 57.936 45.455 31.92 22.38 45.25 3.36
100 101 6.482641 AGAAATGATCACACATGTGCTAGATC 59.517 38.462 30.32 30.32 45.25 2.75
101 102 6.354938 AGAAATGATCACACATGTGCTAGAT 58.645 36.000 25.68 23.39 45.25 1.98
102 103 5.737860 AGAAATGATCACACATGTGCTAGA 58.262 37.500 25.68 20.00 45.25 2.43
103 104 6.128090 ACAAGAAATGATCACACATGTGCTAG 60.128 38.462 25.68 15.48 45.25 3.42
104 105 5.706833 ACAAGAAATGATCACACATGTGCTA 59.293 36.000 25.68 14.15 45.25 3.49
105 106 4.521639 ACAAGAAATGATCACACATGTGCT 59.478 37.500 25.68 10.71 45.25 4.40
106 107 4.801891 ACAAGAAATGATCACACATGTGC 58.198 39.130 25.68 9.88 45.25 4.57
107 108 6.440436 TCAACAAGAAATGATCACACATGTG 58.560 36.000 24.25 24.25 46.91 3.21
108 109 6.638096 TCAACAAGAAATGATCACACATGT 57.362 33.333 0.00 0.00 0.00 3.21
109 110 8.432359 CAAATCAACAAGAAATGATCACACATG 58.568 33.333 0.00 0.00 35.29 3.21
110 111 8.361889 TCAAATCAACAAGAAATGATCACACAT 58.638 29.630 0.00 0.00 35.29 3.21
111 112 7.714703 TCAAATCAACAAGAAATGATCACACA 58.285 30.769 0.00 0.00 35.29 3.72
112 113 7.864379 ACTCAAATCAACAAGAAATGATCACAC 59.136 33.333 0.00 0.00 35.29 3.82
113 114 7.863877 CACTCAAATCAACAAGAAATGATCACA 59.136 33.333 0.00 0.00 35.29 3.58
114 115 7.864379 ACACTCAAATCAACAAGAAATGATCAC 59.136 33.333 0.00 0.00 35.29 3.06
115 116 7.944061 ACACTCAAATCAACAAGAAATGATCA 58.056 30.769 0.00 0.00 35.29 2.92
116 117 8.807667 AACACTCAAATCAACAAGAAATGATC 57.192 30.769 0.00 0.00 35.29 2.92
117 118 9.252962 GAAACACTCAAATCAACAAGAAATGAT 57.747 29.630 0.00 0.00 37.88 2.45
118 119 7.706179 GGAAACACTCAAATCAACAAGAAATGA 59.294 33.333 0.00 0.00 0.00 2.57
119 120 7.707893 AGGAAACACTCAAATCAACAAGAAATG 59.292 33.333 0.00 0.00 0.00 2.32
120 121 7.785033 AGGAAACACTCAAATCAACAAGAAAT 58.215 30.769 0.00 0.00 0.00 2.17
121 122 7.122650 AGAGGAAACACTCAAATCAACAAGAAA 59.877 33.333 0.00 0.00 39.97 2.52
122 123 6.603201 AGAGGAAACACTCAAATCAACAAGAA 59.397 34.615 0.00 0.00 39.97 2.52
123 124 6.122277 AGAGGAAACACTCAAATCAACAAGA 58.878 36.000 0.00 0.00 39.97 3.02
124 125 6.382869 AGAGGAAACACTCAAATCAACAAG 57.617 37.500 0.00 0.00 39.97 3.16
125 126 6.377327 GAGAGGAAACACTCAAATCAACAA 57.623 37.500 0.00 0.00 46.03 2.83
135 136 3.517500 AGGGAGATTGAGAGGAAACACTC 59.482 47.826 0.00 0.00 46.81 3.51
136 137 3.517500 GAGGGAGATTGAGAGGAAACACT 59.482 47.826 0.00 0.00 0.00 3.55
137 138 3.261897 TGAGGGAGATTGAGAGGAAACAC 59.738 47.826 0.00 0.00 0.00 3.32
138 139 3.520696 TGAGGGAGATTGAGAGGAAACA 58.479 45.455 0.00 0.00 0.00 2.83
139 140 4.769345 ATGAGGGAGATTGAGAGGAAAC 57.231 45.455 0.00 0.00 0.00 2.78
140 141 5.786121 AAATGAGGGAGATTGAGAGGAAA 57.214 39.130 0.00 0.00 0.00 3.13
141 142 5.786121 AAAATGAGGGAGATTGAGAGGAA 57.214 39.130 0.00 0.00 0.00 3.36
142 143 5.786121 AAAAATGAGGGAGATTGAGAGGA 57.214 39.130 0.00 0.00 0.00 3.71
161 162 1.210870 CGACGAACACGAGGGAAAAA 58.789 50.000 0.00 0.00 0.00 1.94
162 163 0.102844 ACGACGAACACGAGGGAAAA 59.897 50.000 0.00 0.00 34.70 2.29
163 164 0.595567 CACGACGAACACGAGGGAAA 60.596 55.000 0.00 0.00 34.70 3.13
164 165 1.008194 CACGACGAACACGAGGGAA 60.008 57.895 0.00 0.00 34.70 3.97
165 166 1.727511 AACACGACGAACACGAGGGA 61.728 55.000 0.00 0.00 34.70 4.20
166 167 1.273455 GAACACGACGAACACGAGGG 61.273 60.000 0.00 0.00 34.70 4.30
167 168 0.317603 AGAACACGACGAACACGAGG 60.318 55.000 0.00 0.00 34.70 4.63
168 169 1.447201 GAAGAACACGACGAACACGAG 59.553 52.381 0.00 0.00 34.70 4.18
169 170 1.469917 GAAGAACACGACGAACACGA 58.530 50.000 0.00 0.00 34.70 4.35
170 171 0.156035 CGAAGAACACGACGAACACG 59.844 55.000 0.00 0.00 0.00 4.49
171 172 1.072348 CACGAAGAACACGACGAACAC 60.072 52.381 0.00 0.00 34.70 3.32
172 173 1.193644 CACGAAGAACACGACGAACA 58.806 50.000 0.00 0.00 34.70 3.18
173 174 0.501435 CCACGAAGAACACGACGAAC 59.499 55.000 0.00 0.00 34.70 3.95
174 175 0.595567 CCCACGAAGAACACGACGAA 60.596 55.000 0.00 0.00 34.70 3.85
175 176 1.008194 CCCACGAAGAACACGACGA 60.008 57.895 0.00 0.00 34.70 4.20
176 177 0.388134 ATCCCACGAAGAACACGACG 60.388 55.000 0.00 0.00 34.70 5.12
177 178 1.347320 GATCCCACGAAGAACACGAC 58.653 55.000 0.00 0.00 34.70 4.34
178 179 0.245539 GGATCCCACGAAGAACACGA 59.754 55.000 0.00 0.00 34.70 4.35
179 180 0.739813 GGGATCCCACGAAGAACACG 60.740 60.000 26.95 0.00 35.81 4.49
180 181 0.392595 GGGGATCCCACGAAGAACAC 60.393 60.000 32.07 6.86 44.65 3.32
181 182 1.988015 GGGGATCCCACGAAGAACA 59.012 57.895 32.07 0.00 44.65 3.18
182 183 4.957164 GGGGATCCCACGAAGAAC 57.043 61.111 32.07 8.42 44.65 3.01
193 194 2.710096 TTCACGATTTGGAGGGGATC 57.290 50.000 0.00 0.00 0.00 3.36
194 195 2.576191 TCTTTCACGATTTGGAGGGGAT 59.424 45.455 0.00 0.00 0.00 3.85
195 196 1.982226 TCTTTCACGATTTGGAGGGGA 59.018 47.619 0.00 0.00 0.00 4.81
196 197 2.489938 TCTTTCACGATTTGGAGGGG 57.510 50.000 0.00 0.00 0.00 4.79
197 198 2.609459 CGATCTTTCACGATTTGGAGGG 59.391 50.000 0.00 0.00 0.00 4.30
198 199 2.609459 CCGATCTTTCACGATTTGGAGG 59.391 50.000 0.00 0.00 0.00 4.30
199 200 3.307242 GTCCGATCTTTCACGATTTGGAG 59.693 47.826 0.00 0.00 32.42 3.86
200 201 3.259064 GTCCGATCTTTCACGATTTGGA 58.741 45.455 0.00 0.00 0.00 3.53
201 202 2.351726 GGTCCGATCTTTCACGATTTGG 59.648 50.000 0.00 0.00 0.00 3.28
202 203 3.262420 AGGTCCGATCTTTCACGATTTG 58.738 45.455 0.00 0.00 0.00 2.32
203 204 3.611766 AGGTCCGATCTTTCACGATTT 57.388 42.857 0.00 0.00 0.00 2.17
204 205 3.068307 CCTAGGTCCGATCTTTCACGATT 59.932 47.826 0.00 0.00 0.00 3.34
205 206 2.623889 CCTAGGTCCGATCTTTCACGAT 59.376 50.000 0.00 0.00 0.00 3.73
206 207 2.022195 CCTAGGTCCGATCTTTCACGA 58.978 52.381 0.00 0.00 0.00 4.35
207 208 1.067212 CCCTAGGTCCGATCTTTCACG 59.933 57.143 8.29 0.00 0.00 4.35
208 209 2.108970 ACCCTAGGTCCGATCTTTCAC 58.891 52.381 8.29 0.00 0.00 3.18
209 210 2.544844 ACCCTAGGTCCGATCTTTCA 57.455 50.000 8.29 0.00 0.00 2.69
210 211 3.431905 GGAAACCCTAGGTCCGATCTTTC 60.432 52.174 8.29 3.17 33.12 2.62
211 212 2.504585 GGAAACCCTAGGTCCGATCTTT 59.495 50.000 8.29 0.00 33.12 2.52
212 213 2.117051 GGAAACCCTAGGTCCGATCTT 58.883 52.381 8.29 0.00 33.12 2.40
213 214 1.007963 TGGAAACCCTAGGTCCGATCT 59.992 52.381 8.29 0.00 33.12 2.75
214 215 1.138464 GTGGAAACCCTAGGTCCGATC 59.862 57.143 8.29 0.00 33.12 3.69
215 216 1.201424 GTGGAAACCCTAGGTCCGAT 58.799 55.000 8.29 0.00 33.12 4.18
216 217 0.906282 GGTGGAAACCCTAGGTCCGA 60.906 60.000 8.29 0.00 33.12 4.55
217 218 1.600638 GGTGGAAACCCTAGGTCCG 59.399 63.158 8.29 0.00 33.12 4.79
218 219 1.996900 GGGTGGAAACCCTAGGTCC 59.003 63.158 8.29 9.00 46.39 4.46
226 227 3.009143 AGAAGTGATGTAGGGTGGAAACC 59.991 47.826 0.00 0.00 0.00 3.27
227 228 4.287766 AGAAGTGATGTAGGGTGGAAAC 57.712 45.455 0.00 0.00 0.00 2.78
228 229 4.104102 ACAAGAAGTGATGTAGGGTGGAAA 59.896 41.667 0.00 0.00 0.00 3.13
229 230 3.650942 ACAAGAAGTGATGTAGGGTGGAA 59.349 43.478 0.00 0.00 0.00 3.53
230 231 3.248024 ACAAGAAGTGATGTAGGGTGGA 58.752 45.455 0.00 0.00 0.00 4.02
231 232 3.600388 GACAAGAAGTGATGTAGGGTGG 58.400 50.000 0.00 0.00 0.00 4.61
232 233 3.261897 AGGACAAGAAGTGATGTAGGGTG 59.738 47.826 0.00 0.00 0.00 4.61
233 234 3.515901 GAGGACAAGAAGTGATGTAGGGT 59.484 47.826 0.00 0.00 0.00 4.34
234 235 3.772025 AGAGGACAAGAAGTGATGTAGGG 59.228 47.826 0.00 0.00 0.00 3.53
235 236 6.153680 ACTTAGAGGACAAGAAGTGATGTAGG 59.846 42.308 0.00 0.00 31.05 3.18
236 237 7.122055 AGACTTAGAGGACAAGAAGTGATGTAG 59.878 40.741 0.00 0.00 32.37 2.74
237 238 6.948886 AGACTTAGAGGACAAGAAGTGATGTA 59.051 38.462 0.00 0.00 32.37 2.29
238 239 5.777732 AGACTTAGAGGACAAGAAGTGATGT 59.222 40.000 0.00 0.00 32.37 3.06
239 240 6.279513 AGACTTAGAGGACAAGAAGTGATG 57.720 41.667 0.00 0.00 32.37 3.07
240 241 6.268847 ACAAGACTTAGAGGACAAGAAGTGAT 59.731 38.462 0.00 0.00 32.37 3.06
241 242 5.598830 ACAAGACTTAGAGGACAAGAAGTGA 59.401 40.000 0.00 0.00 32.37 3.41
242 243 5.848406 ACAAGACTTAGAGGACAAGAAGTG 58.152 41.667 0.00 0.00 32.37 3.16
243 244 7.784470 ATACAAGACTTAGAGGACAAGAAGT 57.216 36.000 0.00 0.00 34.88 3.01
244 245 9.495572 AAAATACAAGACTTAGAGGACAAGAAG 57.504 33.333 0.00 0.00 0.00 2.85
245 246 9.847224 AAAAATACAAGACTTAGAGGACAAGAA 57.153 29.630 0.00 0.00 0.00 2.52
269 270 1.770294 AGACTTGGTTCCCGCAAAAA 58.230 45.000 0.00 0.00 0.00 1.94
270 271 1.770294 AAGACTTGGTTCCCGCAAAA 58.230 45.000 0.00 0.00 0.00 2.44
271 272 2.642154 TAAGACTTGGTTCCCGCAAA 57.358 45.000 0.00 0.00 0.00 3.68
272 273 2.871096 ATAAGACTTGGTTCCCGCAA 57.129 45.000 0.00 0.00 0.00 4.85
273 274 2.835764 AGTATAAGACTTGGTTCCCGCA 59.164 45.455 0.00 0.00 33.13 5.69
274 275 3.538634 AGTATAAGACTTGGTTCCCGC 57.461 47.619 0.00 0.00 33.13 6.13
327 328 6.757237 ACATTTAAATGGTTGACTTGCATGA 58.243 32.000 27.43 0.00 40.70 3.07
375 376 7.462204 ACAAGTGTGTATTGCAGATGTTGCTA 61.462 38.462 0.55 0.00 44.51 3.49
377 378 4.557296 ACAAGTGTGTATTGCAGATGTTGC 60.557 41.667 0.00 0.00 44.48 4.17
395 415 5.625568 TCATCTCATCCATCATGACAAGT 57.374 39.130 0.00 0.00 36.51 3.16
459 479 2.106566 ACAAGTGCATGTTTGACCCAA 58.893 42.857 13.37 0.00 0.00 4.12
506 526 9.483916 GGTAAACTACCTACAAAAATTTGCAAT 57.516 29.630 0.00 0.00 45.52 3.56
507 527 8.874744 GGTAAACTACCTACAAAAATTTGCAA 57.125 30.769 5.82 0.00 45.52 4.08
518 538 8.775891 GCGATCAGCTTGGTAAACTACCTACA 62.776 46.154 4.56 0.00 45.42 2.74
519 539 6.468109 GCGATCAGCTTGGTAAACTACCTAC 61.468 48.000 4.56 0.00 45.42 3.18
520 540 4.441079 GCGATCAGCTTGGTAAACTACCTA 60.441 45.833 4.56 0.00 45.42 3.08
521 541 3.679083 GCGATCAGCTTGGTAAACTACCT 60.679 47.826 4.56 0.00 45.42 3.08
522 542 2.608090 GCGATCAGCTTGGTAAACTACC 59.392 50.000 0.00 0.00 45.42 3.18
523 543 3.927552 GCGATCAGCTTGGTAAACTAC 57.072 47.619 0.00 0.00 44.04 2.73
589 609 6.705825 TGGATGACGAGGTGAATGTATTATTG 59.294 38.462 0.00 0.00 0.00 1.90
600 3714 1.866015 AGGATTGGATGACGAGGTGA 58.134 50.000 0.00 0.00 0.00 4.02
603 3717 2.697751 AGAGAAGGATTGGATGACGAGG 59.302 50.000 0.00 0.00 0.00 4.63
605 3719 3.099905 ACAGAGAAGGATTGGATGACGA 58.900 45.455 0.00 0.00 0.00 4.20
607 3721 4.080638 AGGAACAGAGAAGGATTGGATGAC 60.081 45.833 0.00 0.00 0.00 3.06
609 3723 4.500499 AGGAACAGAGAAGGATTGGATG 57.500 45.455 0.00 0.00 0.00 3.51
611 3725 3.909995 TCAAGGAACAGAGAAGGATTGGA 59.090 43.478 0.00 0.00 0.00 3.53
621 3736 0.318441 TCAGCCGTCAAGGAACAGAG 59.682 55.000 0.00 0.00 45.00 3.35
625 3740 0.955428 TGCATCAGCCGTCAAGGAAC 60.955 55.000 0.00 0.00 45.00 3.62
644 3759 3.515104 CAGCCCAGGGAACAAAAACATAT 59.485 43.478 10.89 0.00 0.00 1.78
781 3897 4.202223 GGAGAGAGATACGCCAAATTACCA 60.202 45.833 0.00 0.00 0.00 3.25
791 3907 2.147958 ACATCGAGGAGAGAGATACGC 58.852 52.381 3.06 0.00 0.00 4.42
808 3924 2.664402 AGGAAACAACTGCTGGACAT 57.336 45.000 0.00 0.00 0.00 3.06
811 3927 1.214175 TGGAAGGAAACAACTGCTGGA 59.786 47.619 0.00 0.00 0.00 3.86
856 3973 5.013547 CAGGGAGTCTCAGTTCTCTTTCTA 58.986 45.833 1.47 0.00 0.00 2.10
949 4077 1.202830 TGTTTGGTGCGGTAATGGAGT 60.203 47.619 0.00 0.00 0.00 3.85
950 4078 1.199097 GTGTTTGGTGCGGTAATGGAG 59.801 52.381 0.00 0.00 0.00 3.86
951 4079 1.240256 GTGTTTGGTGCGGTAATGGA 58.760 50.000 0.00 0.00 0.00 3.41
991 4119 4.969196 CGATAGCATGGCCGCGGT 62.969 66.667 28.70 8.14 36.85 5.68
1093 4239 1.303888 GCCCCATCATCGGCATCAT 60.304 57.895 0.00 0.00 45.01 2.45
1094 4240 2.113774 GCCCCATCATCGGCATCA 59.886 61.111 0.00 0.00 45.01 3.07
1098 4244 3.839353 CTCCTGCCCCATCATCGGC 62.839 68.421 0.00 0.00 45.92 5.54
1099 4245 2.429058 CTCCTGCCCCATCATCGG 59.571 66.667 0.00 0.00 0.00 4.18
1100 4246 2.429058 CCTCCTGCCCCATCATCG 59.571 66.667 0.00 0.00 0.00 3.84
1101 4247 2.114838 GCCTCCTGCCCCATCATC 59.885 66.667 0.00 0.00 0.00 2.92
1102 4248 2.369291 AGCCTCCTGCCCCATCAT 60.369 61.111 0.00 0.00 42.71 2.45
1103 4249 3.414193 CAGCCTCCTGCCCCATCA 61.414 66.667 0.00 0.00 42.71 3.07
1104 4250 4.201122 CCAGCCTCCTGCCCCATC 62.201 72.222 0.00 0.00 42.71 3.51
2128 5289 2.760634 TGCGAAACTCTGATAAGGCA 57.239 45.000 0.00 0.00 0.00 4.75
2281 5829 9.221775 CGCAAAATAACATCTAAGGTAACATTC 57.778 33.333 0.00 0.00 41.41 2.67
2375 5923 8.829373 AATTCCTCAGGCAATCTAAACTAAAT 57.171 30.769 0.00 0.00 0.00 1.40
2438 5986 7.652105 CAGAGATTGGCAATAAGATGGAAAATG 59.348 37.037 13.65 0.00 0.00 2.32
2458 6006 1.113788 GAGGCAGCAGAGACAGAGAT 58.886 55.000 0.00 0.00 0.00 2.75
2550 6098 3.932545 AAAATGCGCAATAACTGACCA 57.067 38.095 17.11 0.00 0.00 4.02
2605 6153 0.592637 CTTGAAACTGGCGTGCATGA 59.407 50.000 10.93 0.00 0.00 3.07
2606 6154 0.592637 TCTTGAAACTGGCGTGCATG 59.407 50.000 0.09 0.09 0.00 4.06
2607 6155 1.317613 TTCTTGAAACTGGCGTGCAT 58.682 45.000 0.00 0.00 0.00 3.96
2608 6156 1.001487 CATTCTTGAAACTGGCGTGCA 60.001 47.619 0.00 0.00 0.00 4.57
2609 6157 1.001378 ACATTCTTGAAACTGGCGTGC 60.001 47.619 0.00 0.00 0.00 5.34
2610 6158 2.033299 ACACATTCTTGAAACTGGCGTG 59.967 45.455 0.00 0.00 0.00 5.34
2686 6234 4.448210 GGACTGCGGATACTGGAATAAAA 58.552 43.478 0.00 0.00 0.00 1.52
2691 6239 0.616395 TGGGACTGCGGATACTGGAA 60.616 55.000 0.00 0.00 0.00 3.53
2949 6608 6.222038 TGTCTACAACCTCTGATAATGGAC 57.778 41.667 0.00 0.00 0.00 4.02
2952 6611 8.715998 GCAATATGTCTACAACCTCTGATAATG 58.284 37.037 0.00 0.00 0.00 1.90
2958 6617 6.741992 TTTGCAATATGTCTACAACCTCTG 57.258 37.500 0.00 0.00 0.00 3.35
3227 6895 5.943416 TCAAGGTGAACTCTGTTCAGAAAAA 59.057 36.000 12.64 0.00 0.00 1.94
3273 6942 5.988287 TGGTGAATTCTATGCACATAGTGA 58.012 37.500 15.44 7.85 41.12 3.41
3274 6943 5.277683 GCTGGTGAATTCTATGCACATAGTG 60.278 44.000 15.44 0.00 41.12 2.74
3275 6944 4.818546 GCTGGTGAATTCTATGCACATAGT 59.181 41.667 15.44 0.00 41.12 2.12
3276 6945 5.061853 AGCTGGTGAATTCTATGCACATAG 58.938 41.667 10.79 10.79 41.58 2.23
3277 6946 5.039920 AGCTGGTGAATTCTATGCACATA 57.960 39.130 7.05 0.00 34.33 2.29
3278 6947 3.894759 AGCTGGTGAATTCTATGCACAT 58.105 40.909 7.05 0.00 34.33 3.21
3279 6948 3.354948 AGCTGGTGAATTCTATGCACA 57.645 42.857 7.05 0.00 34.33 4.57
3280 6949 5.059161 TGATAGCTGGTGAATTCTATGCAC 58.941 41.667 7.05 0.00 0.00 4.57
3297 6966 5.177326 CCAGGCATAGAGAGAAATGATAGC 58.823 45.833 0.00 0.00 0.00 2.97
3479 7148 1.774217 AGGGTGGAAGCTTGTGGGA 60.774 57.895 2.10 0.00 0.00 4.37
3622 7292 3.754965 TGTCAAGGTCTGAATTTCCTGG 58.245 45.455 0.00 0.00 35.22 4.45
3866 7536 2.223829 ACTTGACGACAGACTTGGAGTG 60.224 50.000 0.00 0.00 0.00 3.51
3868 7538 2.802787 ACTTGACGACAGACTTGGAG 57.197 50.000 0.00 0.00 0.00 3.86
3873 7543 4.386867 TCTGAAAACTTGACGACAGACT 57.613 40.909 0.00 0.00 31.02 3.24
3915 7585 8.787852 GCCAAGAAGAAGAAGAAGAAGAAATAA 58.212 33.333 0.00 0.00 0.00 1.40
3916 7586 7.939039 TGCCAAGAAGAAGAAGAAGAAGAAATA 59.061 33.333 0.00 0.00 0.00 1.40
3917 7587 6.774656 TGCCAAGAAGAAGAAGAAGAAGAAAT 59.225 34.615 0.00 0.00 0.00 2.17
3919 7589 5.684704 TGCCAAGAAGAAGAAGAAGAAGAA 58.315 37.500 0.00 0.00 0.00 2.52
3924 7594 4.142643 GCTGATGCCAAGAAGAAGAAGAAG 60.143 45.833 0.00 0.00 0.00 2.85
3925 7595 3.755378 GCTGATGCCAAGAAGAAGAAGAA 59.245 43.478 0.00 0.00 0.00 2.52
4038 7725 1.290134 GGATGGTTGTCCTTCCCTCT 58.710 55.000 7.65 0.00 46.35 3.69
4044 7731 1.133513 TGCACTTGGATGGTTGTCCTT 60.134 47.619 0.00 0.00 39.12 3.36
4045 7732 0.478072 TGCACTTGGATGGTTGTCCT 59.522 50.000 0.00 0.00 39.12 3.85
4046 7733 0.883833 CTGCACTTGGATGGTTGTCC 59.116 55.000 0.00 0.00 38.81 4.02
4047 7734 1.808945 CTCTGCACTTGGATGGTTGTC 59.191 52.381 0.00 0.00 0.00 3.18
4048 7735 1.546323 CCTCTGCACTTGGATGGTTGT 60.546 52.381 0.00 0.00 0.00 3.32
4051 7738 1.293062 ATCCTCTGCACTTGGATGGT 58.707 50.000 8.95 0.00 38.96 3.55
4055 7742 3.921104 AGATCTATCCTCTGCACTTGGA 58.079 45.455 0.00 0.77 0.00 3.53
4084 7777 5.007332 ACACCGCTACTTGTTGTAAAAAGAG 59.993 40.000 1.69 0.00 0.00 2.85
4127 7837 4.394920 TCGCAGATAAATTGGTTGAGGTTC 59.605 41.667 0.00 0.00 0.00 3.62
4132 7842 4.832248 AGACTCGCAGATAAATTGGTTGA 58.168 39.130 0.00 0.00 33.89 3.18
4344 8063 3.289834 AAGCCACAGCAACCGCAG 61.290 61.111 0.00 0.00 43.56 5.18
4347 8066 1.526575 AATCCAAGCCACAGCAACCG 61.527 55.000 0.00 0.00 43.56 4.44
4430 8149 0.319297 CACTTTTGCCTGCTTGCTCC 60.319 55.000 0.00 0.00 0.00 4.70
4431 8150 0.319297 CCACTTTTGCCTGCTTGCTC 60.319 55.000 0.00 0.00 0.00 4.26
4432 8151 1.044790 ACCACTTTTGCCTGCTTGCT 61.045 50.000 0.00 0.00 0.00 3.91
4433 8152 0.598419 GACCACTTTTGCCTGCTTGC 60.598 55.000 0.00 0.00 0.00 4.01
4541 8260 3.586892 GTCCTCTTTTCTTACCGGACTG 58.413 50.000 9.46 0.00 38.26 3.51
4542 8261 2.566279 GGTCCTCTTTTCTTACCGGACT 59.434 50.000 9.46 0.00 40.48 3.85
4543 8262 2.301009 TGGTCCTCTTTTCTTACCGGAC 59.699 50.000 9.46 0.00 40.04 4.79
4744 8473 4.259690 GGAATCGTCGAGTAACATTTTCGG 60.260 45.833 0.00 0.00 35.21 4.30
4746 8475 5.773239 TGGAATCGTCGAGTAACATTTTC 57.227 39.130 0.00 0.00 0.00 2.29
4747 8476 6.148811 ACATTGGAATCGTCGAGTAACATTTT 59.851 34.615 0.00 0.00 0.00 1.82
4751 8480 4.171005 GACATTGGAATCGTCGAGTAACA 58.829 43.478 0.00 0.00 0.00 2.41
4792 8528 4.479993 GAGCCAGGCCAGCGTGAT 62.480 66.667 8.22 2.20 34.13 3.06
4853 8589 6.246163 GGGTTATATATCCTTTGGAGGGTTG 58.754 44.000 9.27 0.00 43.72 3.77
4876 8612 4.940012 AGTAATATATAGGGGGAGGGGG 57.060 50.000 0.00 0.00 0.00 5.40
4877 8613 5.861730 TGAAGTAATATATAGGGGGAGGGG 58.138 45.833 0.00 0.00 0.00 4.79
4878 8614 5.367060 GCTGAAGTAATATATAGGGGGAGGG 59.633 48.000 0.00 0.00 0.00 4.30
4879 8615 6.206042 AGCTGAAGTAATATATAGGGGGAGG 58.794 44.000 0.00 0.00 0.00 4.30
4880 8616 6.897966 TGAGCTGAAGTAATATATAGGGGGAG 59.102 42.308 0.00 0.00 0.00 4.30
4881 8617 6.668283 GTGAGCTGAAGTAATATATAGGGGGA 59.332 42.308 0.00 0.00 0.00 4.81
4937 8677 7.439157 TGGAACATGAAGAGAACAGTTTATG 57.561 36.000 0.00 0.00 0.00 1.90
4939 8679 7.226720 GTCTTGGAACATGAAGAGAACAGTTTA 59.773 37.037 0.00 0.00 44.07 2.01
4946 8686 3.067106 GCGTCTTGGAACATGAAGAGAA 58.933 45.455 0.00 0.00 44.07 2.87
4963 8703 0.958822 ATGTGGGACTTTTTGGCGTC 59.041 50.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.