Multiple sequence alignment - TraesCS7D01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G307900 chr7D 100.000 3101 0 0 1 3101 390158246 390155146 0.000000e+00 5727
1 TraesCS7D01G307900 chr7D 95.105 143 7 0 241 383 577916017 577916159 3.110000e-55 226
2 TraesCS7D01G307900 chr7D 94.737 76 4 0 3026 3101 197921877 197921952 5.430000e-23 119
3 TraesCS7D01G307900 chr7D 93.421 76 5 0 3026 3101 197923800 197923875 2.530000e-21 113
4 TraesCS7D01G307900 chr7A 94.575 2636 91 14 418 3026 441198591 441195981 0.000000e+00 4028
5 TraesCS7D01G307900 chr7B 97.740 2124 42 3 903 3026 385620974 385618857 0.000000e+00 3651
6 TraesCS7D01G307900 chr7B 97.526 485 6 4 426 906 385621495 385621013 0.000000e+00 824
7 TraesCS7D01G307900 chr6D 94.142 239 9 2 1 239 89714229 89713996 2.940000e-95 359
8 TraesCS7D01G307900 chr6D 94.161 137 8 0 244 380 364107545 364107409 3.130000e-50 209
9 TraesCS7D01G307900 chr5D 88.841 233 18 3 14 238 309875839 309875607 2.350000e-71 279
10 TraesCS7D01G307900 chr5D 93.567 171 11 0 68 238 309799122 309798952 3.970000e-64 255
11 TraesCS7D01G307900 chr5D 93.836 146 9 0 241 386 528960835 528960980 1.450000e-53 220
12 TraesCS7D01G307900 chr2B 86.580 231 22 4 2 231 746078979 746079201 2.390000e-61 246
13 TraesCS7D01G307900 chr2B 89.815 108 11 0 124 231 746106551 746106444 4.170000e-29 139
14 TraesCS7D01G307900 chr2A 91.195 159 14 0 65 223 765045026 765045184 1.870000e-52 217
15 TraesCS7D01G307900 chr2A 89.241 158 11 4 226 380 194343086 194343240 3.160000e-45 193
16 TraesCS7D01G307900 chr2A 81.780 236 26 13 2 234 398570265 398570044 6.830000e-42 182
17 TraesCS7D01G307900 chr2A 80.342 234 17 11 2 234 398760558 398760763 1.930000e-32 150
18 TraesCS7D01G307900 chr2A 96.053 76 3 0 3026 3101 362446702 362446627 1.170000e-24 124
19 TraesCS7D01G307900 chr4D 93.103 145 10 0 241 385 150431612 150431756 2.420000e-51 213
20 TraesCS7D01G307900 chr6A 90.244 164 11 3 226 385 8588318 8588156 3.130000e-50 209
21 TraesCS7D01G307900 chr6A 97.183 71 2 0 3031 3101 81120365 81120295 1.510000e-23 121
22 TraesCS7D01G307900 chr1B 94.118 136 8 0 246 381 136582985 136583120 1.130000e-49 207
23 TraesCS7D01G307900 chr2D 93.478 138 8 1 244 381 159703941 159703805 1.460000e-48 204
24 TraesCS7D01G307900 chr2D 89.441 161 13 2 226 383 569258701 569258542 1.890000e-47 200
25 TraesCS7D01G307900 chr2D 87.425 167 19 2 65 231 611216932 611216768 1.140000e-44 191
26 TraesCS7D01G307900 chr2D 91.765 85 5 1 3017 3101 239984072 239983990 1.950000e-22 117
27 TraesCS7D01G307900 chr2D 93.421 76 5 0 3026 3101 239982180 239982105 2.530000e-21 113
28 TraesCS7D01G307900 chrUn 96.053 76 3 0 3026 3101 268923935 268924010 1.170000e-24 124
29 TraesCS7D01G307900 chrUn 94.737 76 4 0 3026 3101 268922053 268922128 5.430000e-23 119
30 TraesCS7D01G307900 chr1D 93.506 77 5 0 3025 3101 212523276 212523352 7.030000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G307900 chr7D 390155146 390158246 3100 True 5727.0 5727 100.000 1 3101 1 chr7D.!!$R1 3100
1 TraesCS7D01G307900 chr7A 441195981 441198591 2610 True 4028.0 4028 94.575 418 3026 1 chr7A.!!$R1 2608
2 TraesCS7D01G307900 chr7B 385618857 385621495 2638 True 2237.5 3651 97.633 426 3026 2 chr7B.!!$R1 2600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 454 0.037046 ATTCCGTACCGTGTTGGACC 60.037 55.000 0.0 0.0 42.00 4.46 F
557 558 3.122971 GCCAGGTCCGTTTACGCC 61.123 66.667 0.0 0.0 38.18 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1718 0.035439 TTCTCCTTCATGGGTTCGCC 60.035 55.000 0.00 0.00 36.2 5.54 R
2387 2443 3.460103 ACCAAATCAAAACAAGCTGCAG 58.540 40.909 10.11 10.11 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.533625 TTTCCAAGAGTCAATGGCCG 58.466 50.000 9.53 0.00 36.62 6.13
56 57 0.322456 TTCCAAGAGTCAATGGCCGG 60.322 55.000 0.00 0.00 36.62 6.13
57 58 1.002134 CCAAGAGTCAATGGCCGGT 60.002 57.895 1.90 0.00 0.00 5.28
58 59 0.609131 CCAAGAGTCAATGGCCGGTT 60.609 55.000 1.90 0.00 0.00 4.44
59 60 0.523072 CAAGAGTCAATGGCCGGTTG 59.477 55.000 13.06 13.06 0.00 3.77
60 61 0.400213 AAGAGTCAATGGCCGGTTGA 59.600 50.000 16.81 16.81 33.46 3.18
62 63 3.274067 GTCAATGGCCGGTTGACC 58.726 61.111 29.67 18.26 46.03 4.02
74 75 4.742274 TTGACCGGTCAACTGTCG 57.258 55.556 39.59 0.00 43.90 4.35
75 76 2.117257 TTGACCGGTCAACTGTCGA 58.883 52.632 39.59 21.05 43.90 4.20
76 77 0.249155 TTGACCGGTCAACTGTCGAC 60.249 55.000 39.59 9.11 43.90 4.20
81 82 3.031660 GGTCAACTGTCGACCGATC 57.968 57.895 14.12 0.96 43.36 3.69
82 83 0.242825 GGTCAACTGTCGACCGATCA 59.757 55.000 14.12 0.00 43.36 2.92
83 84 1.336517 GGTCAACTGTCGACCGATCAA 60.337 52.381 14.12 0.00 43.36 2.57
84 85 1.719780 GTCAACTGTCGACCGATCAAC 59.280 52.381 14.12 0.78 0.00 3.18
85 86 1.068474 CAACTGTCGACCGATCAACC 58.932 55.000 14.12 0.00 0.00 3.77
86 87 0.388134 AACTGTCGACCGATCAACCG 60.388 55.000 14.12 0.00 0.00 4.44
87 88 2.126228 TGTCGACCGATCAACCGC 60.126 61.111 14.12 0.00 0.00 5.68
88 89 3.245315 GTCGACCGATCAACCGCG 61.245 66.667 3.51 0.00 0.00 6.46
89 90 3.433453 TCGACCGATCAACCGCGA 61.433 61.111 8.23 0.00 0.00 5.87
90 91 2.278596 CGACCGATCAACCGCGAT 60.279 61.111 8.23 0.00 0.00 4.58
91 92 2.293627 CGACCGATCAACCGCGATC 61.294 63.158 8.23 0.63 38.76 3.69
95 96 3.212538 GATCAACCGCGATCGACG 58.787 61.111 21.57 20.66 45.66 5.12
102 103 2.987593 CGCGATCGACGGAACAAG 59.012 61.111 21.57 0.00 42.83 3.16
103 104 2.505498 CGCGATCGACGGAACAAGG 61.505 63.158 21.57 0.00 42.83 3.61
104 105 2.799540 GCGATCGACGGAACAAGGC 61.800 63.158 21.57 0.00 42.83 4.35
105 106 1.445410 CGATCGACGGAACAAGGCA 60.445 57.895 10.26 0.00 38.46 4.75
106 107 1.011968 CGATCGACGGAACAAGGCAA 61.012 55.000 10.26 0.00 38.46 4.52
107 108 1.369625 GATCGACGGAACAAGGCAAT 58.630 50.000 0.00 0.00 0.00 3.56
108 109 1.327764 GATCGACGGAACAAGGCAATC 59.672 52.381 0.00 0.00 0.00 2.67
109 110 0.320374 TCGACGGAACAAGGCAATCT 59.680 50.000 0.00 0.00 0.00 2.40
110 111 0.443869 CGACGGAACAAGGCAATCTG 59.556 55.000 0.00 0.00 0.00 2.90
111 112 1.523758 GACGGAACAAGGCAATCTGT 58.476 50.000 0.00 0.00 35.45 3.41
112 113 1.197721 GACGGAACAAGGCAATCTGTG 59.802 52.381 0.00 0.00 32.98 3.66
133 134 4.778415 GAGCAGCGAACGAGGCGA 62.778 66.667 0.00 0.00 35.00 5.54
134 135 4.135153 AGCAGCGAACGAGGCGAT 62.135 61.111 0.00 0.00 35.00 4.58
135 136 3.621394 GCAGCGAACGAGGCGATC 61.621 66.667 0.00 0.00 35.00 3.69
136 137 2.103143 CAGCGAACGAGGCGATCT 59.897 61.111 0.00 0.00 35.00 2.75
137 138 1.355563 CAGCGAACGAGGCGATCTA 59.644 57.895 0.00 0.00 35.00 1.98
138 139 0.930742 CAGCGAACGAGGCGATCTAC 60.931 60.000 0.00 0.00 35.00 2.59
139 140 1.657794 GCGAACGAGGCGATCTACC 60.658 63.158 0.00 0.00 0.00 3.18
140 141 1.008767 CGAACGAGGCGATCTACCC 60.009 63.158 0.00 0.00 0.00 3.69
141 142 1.008767 GAACGAGGCGATCTACCCG 60.009 63.158 0.00 9.43 0.00 5.28
142 143 2.403671 GAACGAGGCGATCTACCCGG 62.404 65.000 0.00 0.00 0.00 5.73
143 144 3.671411 CGAGGCGATCTACCCGGG 61.671 72.222 22.25 22.25 0.00 5.73
144 145 2.203451 GAGGCGATCTACCCGGGA 60.203 66.667 32.02 10.31 0.00 5.14
145 146 2.203509 AGGCGATCTACCCGGGAG 60.204 66.667 32.02 20.25 0.00 4.30
146 147 2.203451 GGCGATCTACCCGGGAGA 60.203 66.667 32.02 24.91 0.00 3.71
147 148 1.606889 GGCGATCTACCCGGGAGAT 60.607 63.158 32.02 28.29 36.33 2.75
148 149 1.587054 GCGATCTACCCGGGAGATG 59.413 63.158 32.02 21.98 33.71 2.90
149 150 1.587054 CGATCTACCCGGGAGATGC 59.413 63.158 32.02 20.02 33.71 3.91
150 151 1.587054 GATCTACCCGGGAGATGCG 59.413 63.158 32.02 8.29 33.71 4.73
151 152 0.894184 GATCTACCCGGGAGATGCGA 60.894 60.000 32.02 13.64 33.71 5.10
152 153 0.469331 ATCTACCCGGGAGATGCGAA 60.469 55.000 32.02 3.36 32.30 4.70
153 154 1.067582 CTACCCGGGAGATGCGAAC 59.932 63.158 32.02 0.00 0.00 3.95
154 155 2.679132 CTACCCGGGAGATGCGAACG 62.679 65.000 32.02 0.00 0.00 3.95
155 156 3.833645 CCCGGGAGATGCGAACGA 61.834 66.667 18.48 0.00 0.00 3.85
156 157 2.278857 CCGGGAGATGCGAACGAG 60.279 66.667 0.00 0.00 0.00 4.18
157 158 2.278857 CGGGAGATGCGAACGAGG 60.279 66.667 0.00 0.00 0.00 4.63
158 159 2.586357 GGGAGATGCGAACGAGGC 60.586 66.667 0.00 0.00 0.00 4.70
159 160 2.956964 GGAGATGCGAACGAGGCG 60.957 66.667 0.00 0.00 0.00 5.52
160 161 2.102357 GAGATGCGAACGAGGCGA 59.898 61.111 0.00 0.00 0.00 5.54
161 162 2.202623 AGATGCGAACGAGGCGAC 60.203 61.111 0.00 0.00 0.00 5.19
163 164 1.805945 GATGCGAACGAGGCGACTT 60.806 57.895 0.00 0.00 44.43 3.01
165 166 3.479269 GCGAACGAGGCGACTTGG 61.479 66.667 11.12 0.00 46.96 3.61
166 167 2.809601 CGAACGAGGCGACTTGGG 60.810 66.667 11.12 0.00 46.96 4.12
167 168 3.119096 GAACGAGGCGACTTGGGC 61.119 66.667 11.12 0.00 46.96 5.36
189 190 4.124351 CCAGTTCGAGGGCGCGTA 62.124 66.667 8.43 0.00 37.46 4.42
190 191 2.579787 CAGTTCGAGGGCGCGTAG 60.580 66.667 8.43 0.00 37.46 3.51
191 192 3.823330 AGTTCGAGGGCGCGTAGG 61.823 66.667 8.43 0.00 37.46 3.18
203 204 2.412112 CGTAGGCGCCAGTACCTC 59.588 66.667 31.54 9.13 37.50 3.85
204 205 2.412323 CGTAGGCGCCAGTACCTCA 61.412 63.158 31.54 0.00 37.50 3.86
205 206 1.895238 GTAGGCGCCAGTACCTCAA 59.105 57.895 31.54 0.00 37.50 3.02
206 207 0.248289 GTAGGCGCCAGTACCTCAAA 59.752 55.000 31.54 0.00 37.50 2.69
207 208 0.248289 TAGGCGCCAGTACCTCAAAC 59.752 55.000 31.54 0.00 37.50 2.93
208 209 2.388232 GGCGCCAGTACCTCAAACG 61.388 63.158 24.80 0.00 0.00 3.60
209 210 2.388232 GCGCCAGTACCTCAAACGG 61.388 63.158 0.00 0.00 0.00 4.44
210 211 1.740296 CGCCAGTACCTCAAACGGG 60.740 63.158 0.00 0.00 35.55 5.28
211 212 4.296265 CCAGTACCTCAAACGGGC 57.704 61.111 0.00 0.00 0.00 6.13
212 213 1.740296 CCAGTACCTCAAACGGGCG 60.740 63.158 0.00 0.00 0.00 6.13
213 214 2.047560 AGTACCTCAAACGGGCGC 60.048 61.111 0.00 0.00 0.00 6.53
214 215 2.047560 GTACCTCAAACGGGCGCT 60.048 61.111 7.64 0.00 0.00 5.92
215 216 2.047655 TACCTCAAACGGGCGCTG 60.048 61.111 7.64 2.40 0.00 5.18
216 217 2.575893 TACCTCAAACGGGCGCTGA 61.576 57.895 7.64 0.93 0.00 4.26
217 218 2.102109 TACCTCAAACGGGCGCTGAA 62.102 55.000 7.64 0.00 0.00 3.02
218 219 2.680913 CCTCAAACGGGCGCTGAAG 61.681 63.158 7.64 0.00 0.00 3.02
219 220 2.668212 TCAAACGGGCGCTGAAGG 60.668 61.111 7.64 0.00 0.00 3.46
220 221 4.404654 CAAACGGGCGCTGAAGGC 62.405 66.667 7.64 0.00 37.64 4.35
229 230 3.502572 GCTGAAGGCGCCCTTTAG 58.497 61.111 26.15 21.68 44.82 1.85
230 231 2.115291 GCTGAAGGCGCCCTTTAGG 61.115 63.158 26.15 10.10 44.82 2.69
231 232 1.602237 CTGAAGGCGCCCTTTAGGA 59.398 57.895 26.15 0.00 44.82 2.94
232 233 0.462759 CTGAAGGCGCCCTTTAGGAG 60.463 60.000 26.15 5.79 44.82 3.69
252 253 4.697756 CTCCGCGGGGCTCACAAA 62.698 66.667 27.83 0.26 0.00 2.83
255 256 2.978010 CGCGGGGCTCACAAACTT 60.978 61.111 0.00 0.00 0.00 2.66
256 257 2.644992 GCGGGGCTCACAAACTTG 59.355 61.111 0.00 0.00 0.00 3.16
257 258 2.644992 CGGGGCTCACAAACTTGC 59.355 61.111 0.00 0.00 0.00 4.01
258 259 2.192861 CGGGGCTCACAAACTTGCA 61.193 57.895 0.00 0.00 0.00 4.08
259 260 1.733402 CGGGGCTCACAAACTTGCAA 61.733 55.000 0.00 0.00 0.00 4.08
260 261 0.463620 GGGGCTCACAAACTTGCAAA 59.536 50.000 0.00 0.00 0.00 3.68
280 281 5.821204 CAAAGTATGCTTTATCTTTCGGGG 58.179 41.667 8.56 0.00 42.54 5.73
281 282 4.772886 AGTATGCTTTATCTTTCGGGGT 57.227 40.909 0.00 0.00 0.00 4.95
282 283 5.112129 AGTATGCTTTATCTTTCGGGGTT 57.888 39.130 0.00 0.00 0.00 4.11
283 284 4.881850 AGTATGCTTTATCTTTCGGGGTTG 59.118 41.667 0.00 0.00 0.00 3.77
284 285 2.442413 TGCTTTATCTTTCGGGGTTGG 58.558 47.619 0.00 0.00 0.00 3.77
285 286 1.134367 GCTTTATCTTTCGGGGTTGGC 59.866 52.381 0.00 0.00 0.00 4.52
286 287 1.749063 CTTTATCTTTCGGGGTTGGCC 59.251 52.381 0.00 0.00 0.00 5.36
287 288 0.393267 TTATCTTTCGGGGTTGGCCG 60.393 55.000 0.00 0.00 34.97 6.13
288 289 1.555477 TATCTTTCGGGGTTGGCCGT 61.555 55.000 0.00 0.00 34.97 5.68
289 290 2.814913 ATCTTTCGGGGTTGGCCGTC 62.815 60.000 0.00 0.00 34.97 4.79
290 291 3.835790 CTTTCGGGGTTGGCCGTCA 62.836 63.158 0.00 0.00 34.97 4.35
291 292 3.198953 TTTCGGGGTTGGCCGTCAT 62.199 57.895 0.00 0.00 34.97 3.06
292 293 3.910914 TTCGGGGTTGGCCGTCATG 62.911 63.158 0.00 0.00 34.97 3.07
293 294 4.715523 CGGGGTTGGCCGTCATGT 62.716 66.667 0.00 0.00 34.97 3.21
294 295 2.282887 GGGGTTGGCCGTCATGTT 60.283 61.111 0.00 0.00 34.97 2.71
295 296 1.906333 GGGGTTGGCCGTCATGTTT 60.906 57.895 0.00 0.00 34.97 2.83
296 297 1.288752 GGGTTGGCCGTCATGTTTG 59.711 57.895 0.00 0.00 34.97 2.93
297 298 1.175983 GGGTTGGCCGTCATGTTTGA 61.176 55.000 0.00 0.00 34.97 2.69
298 299 0.887933 GGTTGGCCGTCATGTTTGAT 59.112 50.000 0.00 0.00 33.56 2.57
299 300 1.272212 GGTTGGCCGTCATGTTTGATT 59.728 47.619 0.00 0.00 33.56 2.57
300 301 2.490115 GGTTGGCCGTCATGTTTGATTA 59.510 45.455 0.00 0.00 33.56 1.75
301 302 3.427503 GGTTGGCCGTCATGTTTGATTAG 60.428 47.826 0.00 0.00 33.56 1.73
302 303 2.364632 TGGCCGTCATGTTTGATTAGG 58.635 47.619 0.00 0.00 33.56 2.69
303 304 1.065551 GGCCGTCATGTTTGATTAGGC 59.934 52.381 0.00 9.89 43.25 3.93
304 305 1.065551 GCCGTCATGTTTGATTAGGCC 59.934 52.381 0.00 0.00 40.67 5.19
305 306 2.364632 CCGTCATGTTTGATTAGGCCA 58.635 47.619 5.01 0.00 33.56 5.36
306 307 2.752354 CCGTCATGTTTGATTAGGCCAA 59.248 45.455 5.01 0.00 33.56 4.52
307 308 3.427503 CCGTCATGTTTGATTAGGCCAAC 60.428 47.826 5.01 0.00 33.56 3.77
308 309 3.427503 CGTCATGTTTGATTAGGCCAACC 60.428 47.826 5.01 0.00 33.56 3.77
309 310 3.096092 TCATGTTTGATTAGGCCAACCC 58.904 45.455 5.01 0.00 36.11 4.11
310 311 2.685106 TGTTTGATTAGGCCAACCCA 57.315 45.000 5.01 0.00 36.11 4.51
311 312 2.964209 TGTTTGATTAGGCCAACCCAA 58.036 42.857 5.01 0.48 36.11 4.12
312 313 2.630580 TGTTTGATTAGGCCAACCCAAC 59.369 45.455 5.01 0.86 36.11 3.77
313 314 1.540267 TTGATTAGGCCAACCCAACG 58.460 50.000 5.01 0.00 36.11 4.10
314 315 0.693622 TGATTAGGCCAACCCAACGA 59.306 50.000 5.01 0.00 36.11 3.85
315 316 1.283613 TGATTAGGCCAACCCAACGAT 59.716 47.619 5.01 0.00 36.11 3.73
316 317 1.947456 GATTAGGCCAACCCAACGATC 59.053 52.381 5.01 0.00 36.11 3.69
317 318 0.988832 TTAGGCCAACCCAACGATCT 59.011 50.000 5.01 0.00 36.11 2.75
318 319 0.988832 TAGGCCAACCCAACGATCTT 59.011 50.000 5.01 0.00 36.11 2.40
319 320 0.609131 AGGCCAACCCAACGATCTTG 60.609 55.000 5.01 0.00 36.11 3.02
320 321 0.608035 GGCCAACCCAACGATCTTGA 60.608 55.000 0.00 0.00 0.00 3.02
321 322 1.463674 GCCAACCCAACGATCTTGAT 58.536 50.000 0.00 0.00 0.00 2.57
322 323 1.818674 GCCAACCCAACGATCTTGATT 59.181 47.619 0.00 0.15 0.00 2.57
323 324 2.231235 GCCAACCCAACGATCTTGATTT 59.769 45.455 0.00 0.00 0.00 2.17
324 325 3.673323 GCCAACCCAACGATCTTGATTTC 60.673 47.826 0.00 0.00 0.00 2.17
325 326 3.426159 CCAACCCAACGATCTTGATTTCG 60.426 47.826 0.00 0.00 41.04 3.46
331 332 2.893637 ACGATCTTGATTTCGTCCCTG 58.106 47.619 0.00 0.00 44.72 4.45
332 333 2.233922 ACGATCTTGATTTCGTCCCTGT 59.766 45.455 0.00 0.00 44.72 4.00
333 334 3.446161 ACGATCTTGATTTCGTCCCTGTA 59.554 43.478 0.00 0.00 44.72 2.74
334 335 4.081862 ACGATCTTGATTTCGTCCCTGTAA 60.082 41.667 0.00 0.00 44.72 2.41
335 336 4.868171 CGATCTTGATTTCGTCCCTGTAAA 59.132 41.667 0.00 0.00 0.00 2.01
336 337 5.220416 CGATCTTGATTTCGTCCCTGTAAAC 60.220 44.000 0.00 0.00 0.00 2.01
337 338 4.963373 TCTTGATTTCGTCCCTGTAAACA 58.037 39.130 0.00 0.00 0.00 2.83
338 339 5.556915 TCTTGATTTCGTCCCTGTAAACAT 58.443 37.500 0.00 0.00 0.00 2.71
339 340 6.001460 TCTTGATTTCGTCCCTGTAAACATT 58.999 36.000 0.00 0.00 0.00 2.71
340 341 5.621197 TGATTTCGTCCCTGTAAACATTG 57.379 39.130 0.00 0.00 0.00 2.82
341 342 5.067273 TGATTTCGTCCCTGTAAACATTGT 58.933 37.500 0.00 0.00 0.00 2.71
342 343 4.822036 TTTCGTCCCTGTAAACATTGTG 57.178 40.909 0.00 0.00 0.00 3.33
343 344 3.755112 TCGTCCCTGTAAACATTGTGA 57.245 42.857 0.00 0.00 0.00 3.58
344 345 3.395639 TCGTCCCTGTAAACATTGTGAC 58.604 45.455 0.00 0.00 0.00 3.67
345 346 2.156891 CGTCCCTGTAAACATTGTGACG 59.843 50.000 8.54 8.54 38.42 4.35
346 347 3.395639 GTCCCTGTAAACATTGTGACGA 58.604 45.455 0.00 0.00 0.00 4.20
347 348 3.185797 GTCCCTGTAAACATTGTGACGAC 59.814 47.826 0.00 0.00 0.00 4.34
348 349 3.135225 CCCTGTAAACATTGTGACGACA 58.865 45.455 0.00 0.00 0.00 4.35
349 350 3.751175 CCCTGTAAACATTGTGACGACAT 59.249 43.478 0.00 0.00 30.13 3.06
350 351 4.932799 CCCTGTAAACATTGTGACGACATA 59.067 41.667 0.00 0.00 30.13 2.29
351 352 5.410132 CCCTGTAAACATTGTGACGACATAA 59.590 40.000 0.00 0.00 30.13 1.90
352 353 6.093495 CCCTGTAAACATTGTGACGACATAAT 59.907 38.462 4.20 4.20 38.12 1.28
353 354 7.279090 CCCTGTAAACATTGTGACGACATAATA 59.721 37.037 9.23 0.00 36.08 0.98
354 355 8.661257 CCTGTAAACATTGTGACGACATAATAA 58.339 33.333 9.23 0.00 36.08 1.40
357 358 8.995906 GTAAACATTGTGACGACATAATAAAGC 58.004 33.333 9.23 0.00 36.08 3.51
358 359 6.985188 ACATTGTGACGACATAATAAAGCT 57.015 33.333 9.23 0.00 36.08 3.74
359 360 7.377766 ACATTGTGACGACATAATAAAGCTT 57.622 32.000 9.23 0.00 36.08 3.74
360 361 7.816640 ACATTGTGACGACATAATAAAGCTTT 58.183 30.769 17.30 17.30 36.08 3.51
361 362 7.750458 ACATTGTGACGACATAATAAAGCTTTG 59.250 33.333 22.02 7.76 36.08 2.77
362 363 5.627172 TGTGACGACATAATAAAGCTTTGC 58.373 37.500 22.02 1.37 0.00 3.68
363 364 5.180304 TGTGACGACATAATAAAGCTTTGCA 59.820 36.000 22.02 2.70 0.00 4.08
364 365 5.734498 GTGACGACATAATAAAGCTTTGCAG 59.266 40.000 22.02 9.25 0.00 4.41
365 366 5.411361 TGACGACATAATAAAGCTTTGCAGT 59.589 36.000 22.02 12.19 0.00 4.40
366 367 6.072728 TGACGACATAATAAAGCTTTGCAGTT 60.073 34.615 22.02 12.67 0.00 3.16
367 368 6.677913 ACGACATAATAAAGCTTTGCAGTTT 58.322 32.000 22.02 9.51 0.00 2.66
368 369 6.582295 ACGACATAATAAAGCTTTGCAGTTTG 59.418 34.615 22.02 9.65 0.00 2.93
369 370 6.582295 CGACATAATAAAGCTTTGCAGTTTGT 59.418 34.615 22.02 12.62 0.00 2.83
370 371 7.201266 CGACATAATAAAGCTTTGCAGTTTGTC 60.201 37.037 22.02 18.51 0.00 3.18
371 372 7.661040 ACATAATAAAGCTTTGCAGTTTGTCT 58.339 30.769 22.02 0.00 0.00 3.41
372 373 7.809806 ACATAATAAAGCTTTGCAGTTTGTCTC 59.190 33.333 22.02 0.00 0.00 3.36
373 374 5.772825 ATAAAGCTTTGCAGTTTGTCTCA 57.227 34.783 22.02 0.00 0.00 3.27
374 375 4.454728 AAAGCTTTGCAGTTTGTCTCAA 57.545 36.364 11.80 0.00 0.00 3.02
375 376 4.454728 AAGCTTTGCAGTTTGTCTCAAA 57.545 36.364 0.00 0.00 0.00 2.69
376 377 4.454728 AGCTTTGCAGTTTGTCTCAAAA 57.545 36.364 0.00 0.00 0.00 2.44
377 378 4.819769 AGCTTTGCAGTTTGTCTCAAAAA 58.180 34.783 0.00 0.00 0.00 1.94
409 410 2.175236 CGCAGGGAAAGCTTCTTCC 58.825 57.895 8.47 8.47 43.69 3.46
415 416 0.820226 GGAAAGCTTCTTCCCCATGC 59.180 55.000 0.00 0.00 39.26 4.06
416 417 1.549203 GAAAGCTTCTTCCCCATGCA 58.451 50.000 0.00 0.00 0.00 3.96
453 454 0.037046 ATTCCGTACCGTGTTGGACC 60.037 55.000 0.00 0.00 42.00 4.46
557 558 3.122971 GCCAGGTCCGTTTACGCC 61.123 66.667 0.00 0.00 38.18 5.68
915 966 6.399743 TCGATCTATCTAGTACGATTGAGCT 58.600 40.000 0.00 0.00 32.18 4.09
1467 1522 5.179929 TGTGATTGAATGTGTCATCACTGTC 59.820 40.000 11.36 0.00 44.14 3.51
1663 1718 0.319555 TGTCTTCCGGAAGCAGTTCG 60.320 55.000 34.93 14.56 38.28 3.95
2128 2183 5.819901 AGATCCAAAAGCTACAATGCTAGAC 59.180 40.000 0.00 0.00 43.24 2.59
2256 2312 6.002082 TCCCTGGTAACTCTTTAGCTTTTTC 58.998 40.000 0.00 0.00 36.75 2.29
2257 2313 5.106673 CCCTGGTAACTCTTTAGCTTTTTCG 60.107 44.000 0.00 0.00 36.75 3.46
2387 2443 5.277202 CCGAATGATGTGTGATCTGTTGATC 60.277 44.000 0.00 0.00 46.89 2.92
2493 2549 4.999950 CAGCTTACCACTGTTGATCTCTTT 59.000 41.667 0.00 0.00 0.00 2.52
2494 2550 5.471456 CAGCTTACCACTGTTGATCTCTTTT 59.529 40.000 0.00 0.00 0.00 2.27
2579 2635 5.618056 TCAATGAATGTTGACTTCTGCTC 57.382 39.130 0.00 0.00 33.41 4.26
2596 2652 5.651530 TCTGCTCTTTTAGTTGATACTCCG 58.348 41.667 0.00 0.00 35.78 4.63
2684 2761 2.954318 GGGTGCTAACTGTACTATCCGA 59.046 50.000 0.00 0.00 0.00 4.55
2696 2773 6.661377 ACTGTACTATCCGAAGATATGCATCT 59.339 38.462 0.19 0.00 43.67 2.90
3006 3084 1.457643 CCGGTGGGCTGAGGATCTA 60.458 63.158 0.00 0.00 34.92 1.98
3026 3104 6.085555 TCTAGTTACTCAGTTGTTCTGGTG 57.914 41.667 0.00 0.00 43.76 4.17
3027 3105 5.831525 TCTAGTTACTCAGTTGTTCTGGTGA 59.168 40.000 0.00 0.00 43.76 4.02
3028 3106 5.552870 AGTTACTCAGTTGTTCTGGTGAT 57.447 39.130 0.00 0.00 43.76 3.06
3029 3107 5.542779 AGTTACTCAGTTGTTCTGGTGATC 58.457 41.667 0.00 0.00 43.76 2.92
3030 3108 3.032017 ACTCAGTTGTTCTGGTGATCG 57.968 47.619 0.00 0.00 43.76 3.69
3031 3109 2.289072 ACTCAGTTGTTCTGGTGATCGG 60.289 50.000 0.00 0.00 43.76 4.18
3032 3110 1.967779 TCAGTTGTTCTGGTGATCGGA 59.032 47.619 0.00 0.00 43.76 4.55
3033 3111 2.029020 TCAGTTGTTCTGGTGATCGGAG 60.029 50.000 0.00 0.00 43.76 4.63
3034 3112 1.079503 GTTGTTCTGGTGATCGGAGC 58.920 55.000 0.00 0.00 33.26 4.70
3035 3113 0.976641 TTGTTCTGGTGATCGGAGCT 59.023 50.000 0.00 0.00 33.73 4.09
3036 3114 0.247460 TGTTCTGGTGATCGGAGCTG 59.753 55.000 0.00 0.00 33.73 4.24
3037 3115 0.460987 GTTCTGGTGATCGGAGCTGG 60.461 60.000 0.00 0.00 31.44 4.85
3038 3116 1.617018 TTCTGGTGATCGGAGCTGGG 61.617 60.000 0.00 0.00 31.44 4.45
3039 3117 2.284625 TGGTGATCGGAGCTGGGT 60.285 61.111 0.00 0.00 0.00 4.51
3040 3118 1.903877 CTGGTGATCGGAGCTGGGTT 61.904 60.000 0.00 0.00 0.00 4.11
3041 3119 1.153349 GGTGATCGGAGCTGGGTTC 60.153 63.158 0.00 0.00 0.00 3.62
3042 3120 1.617947 GGTGATCGGAGCTGGGTTCT 61.618 60.000 0.00 0.00 0.00 3.01
3043 3121 0.250513 GTGATCGGAGCTGGGTTCTT 59.749 55.000 0.00 0.00 0.00 2.52
3044 3122 1.480954 GTGATCGGAGCTGGGTTCTTA 59.519 52.381 0.00 0.00 0.00 2.10
3045 3123 1.480954 TGATCGGAGCTGGGTTCTTAC 59.519 52.381 0.00 0.00 0.00 2.34
3046 3124 0.831307 ATCGGAGCTGGGTTCTTACC 59.169 55.000 0.00 0.00 44.22 2.85
3047 3125 1.153628 CGGAGCTGGGTTCTTACCG 60.154 63.158 0.00 0.00 46.04 4.02
3048 3126 1.221021 GGAGCTGGGTTCTTACCGG 59.779 63.158 0.00 0.00 46.04 5.28
3049 3127 1.221021 GAGCTGGGTTCTTACCGGG 59.779 63.158 6.32 0.00 46.04 5.73
3050 3128 1.538135 AGCTGGGTTCTTACCGGGT 60.538 57.895 6.32 4.46 46.04 5.28
3051 3129 1.078637 GCTGGGTTCTTACCGGGTC 60.079 63.158 6.32 0.00 46.04 4.46
3052 3130 1.551019 GCTGGGTTCTTACCGGGTCT 61.551 60.000 6.32 0.00 46.04 3.85
3053 3131 1.856629 CTGGGTTCTTACCGGGTCTA 58.143 55.000 6.32 0.00 46.04 2.59
3054 3132 2.181975 CTGGGTTCTTACCGGGTCTAA 58.818 52.381 6.32 0.00 46.04 2.10
3055 3133 1.901833 TGGGTTCTTACCGGGTCTAAC 59.098 52.381 6.32 6.80 46.04 2.34
3056 3134 2.182827 GGGTTCTTACCGGGTCTAACT 58.817 52.381 6.32 0.00 46.04 2.24
3057 3135 2.167281 GGGTTCTTACCGGGTCTAACTC 59.833 54.545 6.32 3.04 46.04 3.01
3058 3136 2.159324 GGTTCTTACCGGGTCTAACTCG 60.159 54.545 6.32 0.00 42.83 4.18
3059 3137 2.489722 GTTCTTACCGGGTCTAACTCGT 59.510 50.000 6.32 0.00 41.30 4.18
3060 3138 3.627395 TCTTACCGGGTCTAACTCGTA 57.373 47.619 6.32 0.00 41.30 3.43
3061 3139 3.535561 TCTTACCGGGTCTAACTCGTAG 58.464 50.000 6.32 0.00 41.30 3.51
3062 3140 2.332063 TACCGGGTCTAACTCGTAGG 57.668 55.000 6.32 0.00 41.30 3.18
3063 3141 0.329596 ACCGGGTCTAACTCGTAGGT 59.670 55.000 6.32 0.00 41.30 3.08
3064 3142 1.272147 ACCGGGTCTAACTCGTAGGTT 60.272 52.381 6.32 0.00 41.30 3.50
3065 3143 1.133790 CCGGGTCTAACTCGTAGGTTG 59.866 57.143 0.00 0.00 41.30 3.77
3066 3144 1.815003 CGGGTCTAACTCGTAGGTTGT 59.185 52.381 0.00 0.00 37.30 3.32
3067 3145 3.009723 CGGGTCTAACTCGTAGGTTGTA 58.990 50.000 0.00 0.00 37.30 2.41
3068 3146 3.064545 CGGGTCTAACTCGTAGGTTGTAG 59.935 52.174 0.00 0.00 37.30 2.74
3069 3147 3.379688 GGGTCTAACTCGTAGGTTGTAGG 59.620 52.174 0.00 0.00 0.00 3.18
3070 3148 3.379688 GGTCTAACTCGTAGGTTGTAGGG 59.620 52.174 0.00 0.00 0.00 3.53
3071 3149 3.379688 GTCTAACTCGTAGGTTGTAGGGG 59.620 52.174 0.00 0.00 0.00 4.79
3072 3150 2.315720 AACTCGTAGGTTGTAGGGGT 57.684 50.000 0.00 0.00 0.00 4.95
3073 3151 1.553706 ACTCGTAGGTTGTAGGGGTG 58.446 55.000 0.00 0.00 0.00 4.61
3074 3152 0.822164 CTCGTAGGTTGTAGGGGTGG 59.178 60.000 0.00 0.00 0.00 4.61
3075 3153 0.409092 TCGTAGGTTGTAGGGGTGGA 59.591 55.000 0.00 0.00 0.00 4.02
3076 3154 1.203162 TCGTAGGTTGTAGGGGTGGAA 60.203 52.381 0.00 0.00 0.00 3.53
3077 3155 1.206371 CGTAGGTTGTAGGGGTGGAAG 59.794 57.143 0.00 0.00 0.00 3.46
3078 3156 1.558294 GTAGGTTGTAGGGGTGGAAGG 59.442 57.143 0.00 0.00 0.00 3.46
3079 3157 0.845102 AGGTTGTAGGGGTGGAAGGG 60.845 60.000 0.00 0.00 0.00 3.95
3080 3158 1.689412 GTTGTAGGGGTGGAAGGGG 59.311 63.158 0.00 0.00 0.00 4.79
3081 3159 1.542881 TTGTAGGGGTGGAAGGGGG 60.543 63.158 0.00 0.00 0.00 5.40
3082 3160 3.417779 GTAGGGGTGGAAGGGGGC 61.418 72.222 0.00 0.00 0.00 5.80
3083 3161 3.633145 TAGGGGTGGAAGGGGGCT 61.633 66.667 0.00 0.00 0.00 5.19
3084 3162 3.217030 TAGGGGTGGAAGGGGGCTT 62.217 63.158 0.00 0.00 0.00 4.35
3085 3163 4.382541 GGGGTGGAAGGGGGCTTG 62.383 72.222 0.00 0.00 0.00 4.01
3086 3164 4.382541 GGGTGGAAGGGGGCTTGG 62.383 72.222 0.00 0.00 0.00 3.61
3096 3174 4.344865 GGGCTTGGCGTGGAGGAA 62.345 66.667 0.00 0.00 0.00 3.36
3097 3175 2.747855 GGCTTGGCGTGGAGGAAG 60.748 66.667 0.00 0.00 0.00 3.46
3098 3176 2.747855 GCTTGGCGTGGAGGAAGG 60.748 66.667 0.00 0.00 0.00 3.46
3099 3177 2.747855 CTTGGCGTGGAGGAAGGC 60.748 66.667 0.00 0.00 0.00 4.35
3100 3178 4.697756 TTGGCGTGGAGGAAGGCG 62.698 66.667 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.295909 CGGCCATTGACTCTTGGAAAAA 59.704 45.455 2.24 0.00 34.81 1.94
35 36 1.885887 CGGCCATTGACTCTTGGAAAA 59.114 47.619 2.24 0.00 34.81 2.29
36 37 1.533625 CGGCCATTGACTCTTGGAAA 58.466 50.000 2.24 0.00 34.81 3.13
37 38 0.322456 CCGGCCATTGACTCTTGGAA 60.322 55.000 2.24 0.00 34.81 3.53
38 39 1.299648 CCGGCCATTGACTCTTGGA 59.700 57.895 2.24 0.00 34.81 3.53
39 40 0.609131 AACCGGCCATTGACTCTTGG 60.609 55.000 0.00 0.00 36.03 3.61
40 41 0.523072 CAACCGGCCATTGACTCTTG 59.477 55.000 10.63 0.00 0.00 3.02
41 42 0.400213 TCAACCGGCCATTGACTCTT 59.600 50.000 14.08 0.00 31.11 2.85
42 43 2.066340 TCAACCGGCCATTGACTCT 58.934 52.632 14.08 0.00 31.11 3.24
43 44 4.713946 TCAACCGGCCATTGACTC 57.286 55.556 14.08 0.00 31.11 3.36
57 58 0.249155 GTCGACAGTTGACCGGTCAA 60.249 55.000 39.59 39.59 46.27 3.18
58 59 1.361271 GTCGACAGTTGACCGGTCA 59.639 57.895 33.23 33.23 37.91 4.02
59 60 1.372623 GGTCGACAGTTGACCGGTC 60.373 63.158 28.17 28.17 45.82 4.79
60 61 2.732658 GGTCGACAGTTGACCGGT 59.267 61.111 22.27 6.92 45.82 5.28
64 65 1.719780 GTTGATCGGTCGACAGTTGAC 59.280 52.381 18.91 12.15 38.43 3.18
65 66 1.336517 GGTTGATCGGTCGACAGTTGA 60.337 52.381 18.91 9.55 40.03 3.18
66 67 1.068474 GGTTGATCGGTCGACAGTTG 58.932 55.000 18.91 3.93 40.03 3.16
67 68 0.388134 CGGTTGATCGGTCGACAGTT 60.388 55.000 18.91 8.57 40.03 3.16
68 69 1.211969 CGGTTGATCGGTCGACAGT 59.788 57.895 18.91 4.19 40.03 3.55
69 70 2.158959 GCGGTTGATCGGTCGACAG 61.159 63.158 18.91 14.59 40.03 3.51
70 71 2.126228 GCGGTTGATCGGTCGACA 60.126 61.111 18.91 0.00 40.03 4.35
71 72 2.931713 ATCGCGGTTGATCGGTCGAC 62.932 60.000 7.13 7.13 37.92 4.20
72 73 2.657484 GATCGCGGTTGATCGGTCGA 62.657 60.000 6.13 0.00 35.80 4.20
73 74 2.278596 ATCGCGGTTGATCGGTCG 60.279 61.111 6.13 0.00 0.00 4.79
74 75 3.614143 GATCGCGGTTGATCGGTC 58.386 61.111 6.13 0.00 35.80 4.79
78 79 2.293627 CCGTCGATCGCGGTTGATC 61.294 63.158 30.13 3.88 43.84 2.92
79 80 2.278596 CCGTCGATCGCGGTTGAT 60.279 61.111 30.13 0.00 43.84 2.57
85 86 2.505498 CCTTGTTCCGTCGATCGCG 61.505 63.158 20.10 20.10 38.35 5.87
86 87 2.799540 GCCTTGTTCCGTCGATCGC 61.800 63.158 11.09 4.79 38.35 4.58
87 88 1.011968 TTGCCTTGTTCCGTCGATCG 61.012 55.000 9.36 9.36 39.52 3.69
88 89 1.327764 GATTGCCTTGTTCCGTCGATC 59.672 52.381 0.00 0.00 0.00 3.69
89 90 1.066143 AGATTGCCTTGTTCCGTCGAT 60.066 47.619 0.00 0.00 0.00 3.59
90 91 0.320374 AGATTGCCTTGTTCCGTCGA 59.680 50.000 0.00 0.00 0.00 4.20
91 92 0.443869 CAGATTGCCTTGTTCCGTCG 59.556 55.000 0.00 0.00 0.00 5.12
92 93 1.197721 CACAGATTGCCTTGTTCCGTC 59.802 52.381 0.00 0.00 0.00 4.79
93 94 1.238439 CACAGATTGCCTTGTTCCGT 58.762 50.000 0.00 0.00 0.00 4.69
94 95 0.109597 GCACAGATTGCCTTGTTCCG 60.110 55.000 0.00 0.00 46.63 4.30
95 96 3.800628 GCACAGATTGCCTTGTTCC 57.199 52.632 0.00 0.00 46.63 3.62
104 105 2.398429 CTGCTCGCGCACAGATTG 59.602 61.111 19.60 0.00 42.25 2.67
105 106 3.494336 GCTGCTCGCGCACAGATT 61.494 61.111 25.97 0.00 42.25 2.40
116 117 4.778415 TCGCCTCGTTCGCTGCTC 62.778 66.667 0.00 0.00 0.00 4.26
117 118 4.135153 ATCGCCTCGTTCGCTGCT 62.135 61.111 0.00 0.00 0.00 4.24
118 119 2.663630 TAGATCGCCTCGTTCGCTGC 62.664 60.000 0.00 0.00 31.85 5.25
119 120 0.930742 GTAGATCGCCTCGTTCGCTG 60.931 60.000 0.00 0.00 31.85 5.18
120 121 1.355916 GTAGATCGCCTCGTTCGCT 59.644 57.895 0.00 0.00 31.85 4.93
121 122 1.657794 GGTAGATCGCCTCGTTCGC 60.658 63.158 2.63 0.00 31.85 4.70
122 123 1.008767 GGGTAGATCGCCTCGTTCG 60.009 63.158 8.83 0.00 31.85 3.95
123 124 1.008767 CGGGTAGATCGCCTCGTTC 60.009 63.158 8.83 0.00 0.00 3.95
124 125 2.487532 CCGGGTAGATCGCCTCGTT 61.488 63.158 0.00 0.00 0.00 3.85
125 126 2.905880 CCGGGTAGATCGCCTCGT 60.906 66.667 0.00 0.00 0.00 4.18
126 127 3.671411 CCCGGGTAGATCGCCTCG 61.671 72.222 14.18 4.91 0.00 4.63
127 128 2.203451 TCCCGGGTAGATCGCCTC 60.203 66.667 22.86 0.00 0.00 4.70
128 129 2.082836 ATCTCCCGGGTAGATCGCCT 62.083 60.000 22.86 3.90 0.00 5.52
129 130 1.606889 ATCTCCCGGGTAGATCGCC 60.607 63.158 22.86 1.32 0.00 5.54
130 131 1.587054 CATCTCCCGGGTAGATCGC 59.413 63.158 24.38 0.00 31.22 4.58
131 132 1.587054 GCATCTCCCGGGTAGATCG 59.413 63.158 24.38 20.58 31.22 3.69
132 133 0.894184 TCGCATCTCCCGGGTAGATC 60.894 60.000 24.38 18.97 31.22 2.75
133 134 0.469331 TTCGCATCTCCCGGGTAGAT 60.469 55.000 22.86 22.66 33.94 1.98
134 135 1.076559 TTCGCATCTCCCGGGTAGA 60.077 57.895 22.86 21.43 0.00 2.59
135 136 1.067582 GTTCGCATCTCCCGGGTAG 59.932 63.158 22.86 16.64 0.00 3.18
136 137 2.777972 CGTTCGCATCTCCCGGGTA 61.778 63.158 22.86 10.93 0.00 3.69
137 138 4.143333 CGTTCGCATCTCCCGGGT 62.143 66.667 22.86 0.00 0.00 5.28
138 139 3.774959 CTCGTTCGCATCTCCCGGG 62.775 68.421 16.85 16.85 0.00 5.73
139 140 2.278857 CTCGTTCGCATCTCCCGG 60.279 66.667 0.00 0.00 0.00 5.73
140 141 2.278857 CCTCGTTCGCATCTCCCG 60.279 66.667 0.00 0.00 0.00 5.14
141 142 2.586357 GCCTCGTTCGCATCTCCC 60.586 66.667 0.00 0.00 0.00 4.30
142 143 2.956964 CGCCTCGTTCGCATCTCC 60.957 66.667 0.00 0.00 0.00 3.71
143 144 2.102357 TCGCCTCGTTCGCATCTC 59.898 61.111 0.00 0.00 0.00 2.75
144 145 2.202623 GTCGCCTCGTTCGCATCT 60.203 61.111 0.00 0.00 0.00 2.90
145 146 1.805945 AAGTCGCCTCGTTCGCATC 60.806 57.895 0.00 0.00 0.00 3.91
146 147 2.094659 CAAGTCGCCTCGTTCGCAT 61.095 57.895 0.00 0.00 0.00 4.73
147 148 2.733218 CAAGTCGCCTCGTTCGCA 60.733 61.111 0.00 0.00 0.00 5.10
148 149 3.479269 CCAAGTCGCCTCGTTCGC 61.479 66.667 0.00 0.00 0.00 4.70
149 150 2.809601 CCCAAGTCGCCTCGTTCG 60.810 66.667 0.00 0.00 0.00 3.95
150 151 3.119096 GCCCAAGTCGCCTCGTTC 61.119 66.667 0.00 0.00 0.00 3.95
151 152 4.699522 GGCCCAAGTCGCCTCGTT 62.700 66.667 0.00 0.00 43.48 3.85
172 173 4.124351 TACGCGCCCTCGAACTGG 62.124 66.667 5.73 0.00 38.10 4.00
173 174 2.579787 CTACGCGCCCTCGAACTG 60.580 66.667 5.73 0.00 38.10 3.16
174 175 3.823330 CCTACGCGCCCTCGAACT 61.823 66.667 5.73 0.00 38.10 3.01
186 187 1.940883 TTGAGGTACTGGCGCCTACG 61.941 60.000 29.70 18.09 41.55 3.51
187 188 0.248289 TTTGAGGTACTGGCGCCTAC 59.752 55.000 29.70 21.82 41.55 3.18
188 189 0.248289 GTTTGAGGTACTGGCGCCTA 59.752 55.000 29.70 10.06 41.55 3.93
189 190 1.003718 GTTTGAGGTACTGGCGCCT 60.004 57.895 29.70 11.31 41.55 5.52
190 191 2.388232 CGTTTGAGGTACTGGCGCC 61.388 63.158 22.73 22.73 41.55 6.53
191 192 2.388232 CCGTTTGAGGTACTGGCGC 61.388 63.158 0.00 0.00 41.55 6.53
192 193 1.740296 CCCGTTTGAGGTACTGGCG 60.740 63.158 0.00 0.00 41.55 5.69
193 194 2.038837 GCCCGTTTGAGGTACTGGC 61.039 63.158 0.00 0.00 41.55 4.85
194 195 1.740296 CGCCCGTTTGAGGTACTGG 60.740 63.158 0.00 0.00 41.55 4.00
195 196 2.388232 GCGCCCGTTTGAGGTACTG 61.388 63.158 0.00 0.00 41.55 2.74
197 198 2.047560 AGCGCCCGTTTGAGGTAC 60.048 61.111 2.29 0.00 0.00 3.34
198 199 2.047655 CAGCGCCCGTTTGAGGTA 60.048 61.111 2.29 0.00 0.00 3.08
199 200 3.469863 TTCAGCGCCCGTTTGAGGT 62.470 57.895 2.29 0.00 0.00 3.85
200 201 2.668212 TTCAGCGCCCGTTTGAGG 60.668 61.111 2.29 0.00 0.00 3.86
201 202 2.680913 CCTTCAGCGCCCGTTTGAG 61.681 63.158 2.29 0.00 0.00 3.02
202 203 2.668212 CCTTCAGCGCCCGTTTGA 60.668 61.111 2.29 0.00 0.00 2.69
203 204 4.404654 GCCTTCAGCGCCCGTTTG 62.405 66.667 2.29 0.00 0.00 2.93
212 213 2.115291 CCTAAAGGGCGCCTTCAGC 61.115 63.158 28.56 9.28 43.92 4.26
213 214 0.462759 CTCCTAAAGGGCGCCTTCAG 60.463 60.000 28.56 18.85 43.92 3.02
214 215 1.602237 CTCCTAAAGGGCGCCTTCA 59.398 57.895 28.56 9.65 43.92 3.02
215 216 1.820056 GCTCCTAAAGGGCGCCTTC 60.820 63.158 28.56 11.04 43.92 3.46
217 218 2.689034 AGCTCCTAAAGGGCGCCT 60.689 61.111 28.56 9.55 36.77 5.52
218 219 2.203084 GAGCTCCTAAAGGGCGCC 60.203 66.667 21.18 21.18 36.77 6.53
219 220 1.227409 GAGAGCTCCTAAAGGGCGC 60.227 63.158 10.93 0.00 36.77 6.53
220 221 1.443828 GGAGAGCTCCTAAAGGGCG 59.556 63.158 10.93 0.00 46.16 6.13
235 236 4.697756 TTTGTGAGCCCCGCGGAG 62.698 66.667 30.73 16.89 0.00 4.63
238 239 2.978010 AAGTTTGTGAGCCCCGCG 60.978 61.111 0.00 0.00 0.00 6.46
239 240 2.644992 CAAGTTTGTGAGCCCCGC 59.355 61.111 0.00 0.00 0.00 6.13
240 241 1.733402 TTGCAAGTTTGTGAGCCCCG 61.733 55.000 0.00 0.00 0.00 5.73
241 242 0.463620 TTTGCAAGTTTGTGAGCCCC 59.536 50.000 0.00 0.00 0.00 5.80
242 243 1.136891 ACTTTGCAAGTTTGTGAGCCC 59.863 47.619 0.00 0.00 39.04 5.19
243 244 2.584492 ACTTTGCAAGTTTGTGAGCC 57.416 45.000 0.00 0.00 39.04 4.70
257 258 5.357032 ACCCCGAAAGATAAAGCATACTTTG 59.643 40.000 0.89 0.00 45.72 2.77
259 260 5.112129 ACCCCGAAAGATAAAGCATACTT 57.888 39.130 0.00 0.00 37.90 2.24
260 261 4.772886 ACCCCGAAAGATAAAGCATACT 57.227 40.909 0.00 0.00 0.00 2.12
261 262 4.036380 CCAACCCCGAAAGATAAAGCATAC 59.964 45.833 0.00 0.00 0.00 2.39
262 263 4.204012 CCAACCCCGAAAGATAAAGCATA 58.796 43.478 0.00 0.00 0.00 3.14
263 264 3.023832 CCAACCCCGAAAGATAAAGCAT 58.976 45.455 0.00 0.00 0.00 3.79
264 265 2.442413 CCAACCCCGAAAGATAAAGCA 58.558 47.619 0.00 0.00 0.00 3.91
265 266 1.134367 GCCAACCCCGAAAGATAAAGC 59.866 52.381 0.00 0.00 0.00 3.51
266 267 1.749063 GGCCAACCCCGAAAGATAAAG 59.251 52.381 0.00 0.00 0.00 1.85
267 268 1.842052 GGCCAACCCCGAAAGATAAA 58.158 50.000 0.00 0.00 0.00 1.40
268 269 3.581163 GGCCAACCCCGAAAGATAA 57.419 52.632 0.00 0.00 0.00 1.75
277 278 1.906333 AAACATGACGGCCAACCCC 60.906 57.895 2.24 0.00 0.00 4.95
278 279 1.175983 TCAAACATGACGGCCAACCC 61.176 55.000 2.24 0.00 0.00 4.11
279 280 0.887933 ATCAAACATGACGGCCAACC 59.112 50.000 2.24 0.00 0.00 3.77
280 281 2.723124 AATCAAACATGACGGCCAAC 57.277 45.000 2.24 0.00 0.00 3.77
281 282 2.752354 CCTAATCAAACATGACGGCCAA 59.248 45.455 2.24 0.00 0.00 4.52
282 283 2.364632 CCTAATCAAACATGACGGCCA 58.635 47.619 2.24 0.00 0.00 5.36
283 284 1.065551 GCCTAATCAAACATGACGGCC 59.934 52.381 0.00 0.00 0.00 6.13
284 285 1.065551 GGCCTAATCAAACATGACGGC 59.934 52.381 0.00 0.00 35.63 5.68
285 286 2.364632 TGGCCTAATCAAACATGACGG 58.635 47.619 3.32 0.00 0.00 4.79
286 287 3.427503 GGTTGGCCTAATCAAACATGACG 60.428 47.826 3.32 0.00 32.49 4.35
287 288 3.119137 GGGTTGGCCTAATCAAACATGAC 60.119 47.826 3.32 0.00 33.78 3.06
288 289 3.096092 GGGTTGGCCTAATCAAACATGA 58.904 45.455 3.32 0.00 33.78 3.07
289 290 2.830923 TGGGTTGGCCTAATCAAACATG 59.169 45.455 3.32 0.00 33.78 3.21
290 291 3.182887 TGGGTTGGCCTAATCAAACAT 57.817 42.857 3.32 0.00 33.78 2.71
291 292 2.630580 GTTGGGTTGGCCTAATCAAACA 59.369 45.455 3.32 0.00 37.57 2.83
292 293 2.352323 CGTTGGGTTGGCCTAATCAAAC 60.352 50.000 3.32 6.35 37.57 2.93
293 294 1.889829 CGTTGGGTTGGCCTAATCAAA 59.110 47.619 3.32 0.00 37.57 2.69
294 295 1.074084 TCGTTGGGTTGGCCTAATCAA 59.926 47.619 3.32 1.64 37.57 2.57
295 296 0.693622 TCGTTGGGTTGGCCTAATCA 59.306 50.000 3.32 0.00 37.57 2.57
296 297 1.947456 GATCGTTGGGTTGGCCTAATC 59.053 52.381 3.32 0.00 37.57 1.75
297 298 1.564348 AGATCGTTGGGTTGGCCTAAT 59.436 47.619 3.32 0.00 37.57 1.73
298 299 0.988832 AGATCGTTGGGTTGGCCTAA 59.011 50.000 3.32 0.00 32.51 2.69
299 300 0.988832 AAGATCGTTGGGTTGGCCTA 59.011 50.000 3.32 0.00 34.45 3.93
300 301 0.609131 CAAGATCGTTGGGTTGGCCT 60.609 55.000 3.32 0.00 34.45 5.19
301 302 0.608035 TCAAGATCGTTGGGTTGGCC 60.608 55.000 0.00 0.00 0.00 5.36
302 303 1.463674 ATCAAGATCGTTGGGTTGGC 58.536 50.000 5.45 0.00 0.00 4.52
303 304 3.426159 CGAAATCAAGATCGTTGGGTTGG 60.426 47.826 5.45 0.36 34.48 3.77
304 305 3.747193 CGAAATCAAGATCGTTGGGTTG 58.253 45.455 5.45 0.00 34.48 3.77
312 313 2.893637 ACAGGGACGAAATCAAGATCG 58.106 47.619 0.00 0.00 44.33 3.69
313 314 5.642063 TGTTTACAGGGACGAAATCAAGATC 59.358 40.000 0.00 0.00 0.00 2.75
314 315 5.556915 TGTTTACAGGGACGAAATCAAGAT 58.443 37.500 0.00 0.00 0.00 2.40
315 316 4.963373 TGTTTACAGGGACGAAATCAAGA 58.037 39.130 0.00 0.00 0.00 3.02
316 317 5.880054 ATGTTTACAGGGACGAAATCAAG 57.120 39.130 0.00 0.00 0.00 3.02
317 318 5.533154 ACAATGTTTACAGGGACGAAATCAA 59.467 36.000 0.00 0.00 0.00 2.57
318 319 5.049060 CACAATGTTTACAGGGACGAAATCA 60.049 40.000 0.00 0.00 0.00 2.57
319 320 5.180492 TCACAATGTTTACAGGGACGAAATC 59.820 40.000 0.00 0.00 0.00 2.17
320 321 5.048991 GTCACAATGTTTACAGGGACGAAAT 60.049 40.000 0.00 0.00 0.00 2.17
321 322 4.273969 GTCACAATGTTTACAGGGACGAAA 59.726 41.667 0.00 0.00 0.00 3.46
322 323 3.810941 GTCACAATGTTTACAGGGACGAA 59.189 43.478 0.00 0.00 0.00 3.85
323 324 3.395639 GTCACAATGTTTACAGGGACGA 58.604 45.455 0.00 0.00 0.00 4.20
324 325 2.156891 CGTCACAATGTTTACAGGGACG 59.843 50.000 11.00 11.00 40.45 4.79
325 326 3.185797 GTCGTCACAATGTTTACAGGGAC 59.814 47.826 0.00 0.00 0.00 4.46
326 327 3.181464 TGTCGTCACAATGTTTACAGGGA 60.181 43.478 0.00 0.00 0.00 4.20
327 328 3.135225 TGTCGTCACAATGTTTACAGGG 58.865 45.455 0.00 0.00 0.00 4.45
328 329 6.474819 TTATGTCGTCACAATGTTTACAGG 57.525 37.500 0.00 0.00 35.64 4.00
331 332 8.995906 GCTTTATTATGTCGTCACAATGTTTAC 58.004 33.333 0.00 0.00 35.64 2.01
332 333 8.941977 AGCTTTATTATGTCGTCACAATGTTTA 58.058 29.630 0.00 0.00 35.64 2.01
333 334 7.816640 AGCTTTATTATGTCGTCACAATGTTT 58.183 30.769 0.00 0.00 35.64 2.83
334 335 7.377766 AGCTTTATTATGTCGTCACAATGTT 57.622 32.000 0.00 0.00 35.64 2.71
335 336 6.985188 AGCTTTATTATGTCGTCACAATGT 57.015 33.333 0.00 0.00 35.64 2.71
336 337 7.253420 GCAAAGCTTTATTATGTCGTCACAATG 60.253 37.037 12.25 0.00 35.64 2.82
337 338 6.747280 GCAAAGCTTTATTATGTCGTCACAAT 59.253 34.615 12.25 0.00 35.64 2.71
338 339 6.083630 GCAAAGCTTTATTATGTCGTCACAA 58.916 36.000 12.25 0.00 35.64 3.33
339 340 5.180304 TGCAAAGCTTTATTATGTCGTCACA 59.820 36.000 12.25 0.00 36.78 3.58
340 341 5.627172 TGCAAAGCTTTATTATGTCGTCAC 58.373 37.500 12.25 0.00 0.00 3.67
341 342 5.411361 ACTGCAAAGCTTTATTATGTCGTCA 59.589 36.000 12.25 0.00 0.00 4.35
342 343 5.869350 ACTGCAAAGCTTTATTATGTCGTC 58.131 37.500 12.25 0.00 0.00 4.20
343 344 5.880054 ACTGCAAAGCTTTATTATGTCGT 57.120 34.783 12.25 0.00 0.00 4.34
344 345 6.582295 ACAAACTGCAAAGCTTTATTATGTCG 59.418 34.615 12.25 0.00 0.00 4.35
345 346 7.809806 AGACAAACTGCAAAGCTTTATTATGTC 59.190 33.333 21.79 21.79 33.11 3.06
346 347 7.661040 AGACAAACTGCAAAGCTTTATTATGT 58.339 30.769 12.25 11.95 0.00 2.29
347 348 7.809331 TGAGACAAACTGCAAAGCTTTATTATG 59.191 33.333 12.25 8.98 0.00 1.90
348 349 7.885297 TGAGACAAACTGCAAAGCTTTATTAT 58.115 30.769 12.25 0.00 0.00 1.28
349 350 7.270757 TGAGACAAACTGCAAAGCTTTATTA 57.729 32.000 12.25 0.25 0.00 0.98
350 351 6.147864 TGAGACAAACTGCAAAGCTTTATT 57.852 33.333 12.25 1.51 0.00 1.40
351 352 5.772825 TGAGACAAACTGCAAAGCTTTAT 57.227 34.783 12.25 0.00 0.00 1.40
352 353 5.574891 TTGAGACAAACTGCAAAGCTTTA 57.425 34.783 12.25 0.00 0.00 1.85
353 354 4.454728 TTGAGACAAACTGCAAAGCTTT 57.545 36.364 5.69 5.69 0.00 3.51
354 355 4.454728 TTTGAGACAAACTGCAAAGCTT 57.545 36.364 0.00 0.00 0.00 3.74
355 356 4.454728 TTTTGAGACAAACTGCAAAGCT 57.545 36.364 0.00 0.00 32.19 3.74
386 387 0.742635 GAAGCTTTCCCTGCGGAGAG 60.743 60.000 5.10 0.00 42.24 3.20
387 388 1.194781 AGAAGCTTTCCCTGCGGAGA 61.195 55.000 5.10 0.00 40.10 3.71
388 389 0.322008 AAGAAGCTTTCCCTGCGGAG 60.322 55.000 0.00 0.00 40.10 4.63
389 390 0.321653 GAAGAAGCTTTCCCTGCGGA 60.322 55.000 0.00 0.00 35.88 5.54
390 391 1.308783 GGAAGAAGCTTTCCCTGCGG 61.309 60.000 0.00 0.00 40.64 5.69
391 392 2.175236 GGAAGAAGCTTTCCCTGCG 58.825 57.895 0.00 0.00 40.64 5.18
396 397 0.820226 GCATGGGGAAGAAGCTTTCC 59.180 55.000 8.47 8.47 44.82 3.13
397 398 1.203287 GTGCATGGGGAAGAAGCTTTC 59.797 52.381 0.00 0.00 0.00 2.62
398 399 1.260544 GTGCATGGGGAAGAAGCTTT 58.739 50.000 0.00 0.00 0.00 3.51
399 400 0.962356 CGTGCATGGGGAAGAAGCTT 60.962 55.000 0.00 0.00 0.00 3.74
400 401 1.377725 CGTGCATGGGGAAGAAGCT 60.378 57.895 0.00 0.00 0.00 3.74
401 402 2.409870 CCGTGCATGGGGAAGAAGC 61.410 63.158 17.90 0.00 0.00 3.86
402 403 3.909662 CCGTGCATGGGGAAGAAG 58.090 61.111 17.90 0.00 0.00 2.85
453 454 1.202098 GCACATTAACTAAACGGGCCG 60.202 52.381 27.06 27.06 0.00 6.13
557 558 2.521465 TGCCCAAACCCAGCACAG 60.521 61.111 0.00 0.00 0.00 3.66
637 641 2.506438 GCGGACCTACAGCGTGTC 60.506 66.667 0.00 0.00 0.00 3.67
813 818 4.529897 TGGAATCAAGAATGGATCCACAG 58.470 43.478 18.99 5.50 37.03 3.66
898 903 9.632807 GAAATCAATAGCTCAATCGTACTAGAT 57.367 33.333 0.00 0.00 0.00 1.98
899 904 8.851145 AGAAATCAATAGCTCAATCGTACTAGA 58.149 33.333 0.00 0.00 0.00 2.43
900 905 9.469807 AAGAAATCAATAGCTCAATCGTACTAG 57.530 33.333 0.00 0.00 0.00 2.57
941 992 7.603963 ACATTAGCACATTCGTGTATGTTAA 57.396 32.000 0.00 0.00 45.50 2.01
1467 1522 3.947834 CAGACACCCTTAATTGGCCTAAG 59.052 47.826 3.32 3.58 0.00 2.18
1663 1718 0.035439 TTCTCCTTCATGGGTTCGCC 60.035 55.000 0.00 0.00 36.20 5.54
2256 2312 7.065803 ACCAACATGACATTAATAGTTTCTCCG 59.934 37.037 0.00 0.00 0.00 4.63
2257 2313 8.281212 ACCAACATGACATTAATAGTTTCTCC 57.719 34.615 0.00 0.00 0.00 3.71
2387 2443 3.460103 ACCAAATCAAAACAAGCTGCAG 58.540 40.909 10.11 10.11 0.00 4.41
2579 2635 5.805994 GGAGTCACGGAGTATCAACTAAAAG 59.194 44.000 0.00 0.00 41.61 2.27
2596 2652 6.561614 TCTTCTTTATCATACACGGAGTCAC 58.438 40.000 0.00 0.00 41.61 3.67
2684 2761 7.094463 GCTTATGGCAGTAAAGATGCATATCTT 60.094 37.037 0.00 0.00 46.13 2.40
2696 2773 5.622007 GCAACAATCAGCTTATGGCAGTAAA 60.622 40.000 0.00 0.00 44.79 2.01
2846 2923 8.991026 CAGAAAATGCACTTTGGATAATGAAAA 58.009 29.630 0.00 0.00 0.00 2.29
3016 3094 0.976641 AGCTCCGATCACCAGAACAA 59.023 50.000 0.00 0.00 0.00 2.83
3026 3104 1.202545 GGTAAGAACCCAGCTCCGATC 60.203 57.143 0.00 0.00 40.21 3.69
3027 3105 0.831307 GGTAAGAACCCAGCTCCGAT 59.169 55.000 0.00 0.00 40.21 4.18
3028 3106 1.601419 CGGTAAGAACCCAGCTCCGA 61.601 60.000 0.00 0.00 43.54 4.55
3029 3107 1.153628 CGGTAAGAACCCAGCTCCG 60.154 63.158 0.00 0.00 43.54 4.63
3030 3108 1.221021 CCGGTAAGAACCCAGCTCC 59.779 63.158 0.00 0.00 43.54 4.70
3031 3109 1.221021 CCCGGTAAGAACCCAGCTC 59.779 63.158 0.00 0.00 43.54 4.09
3032 3110 1.538135 ACCCGGTAAGAACCCAGCT 60.538 57.895 0.00 0.00 43.54 4.24
3033 3111 1.078637 GACCCGGTAAGAACCCAGC 60.079 63.158 0.00 0.00 43.54 4.85
3034 3112 1.856629 TAGACCCGGTAAGAACCCAG 58.143 55.000 0.00 0.00 43.54 4.45
3035 3113 1.901833 GTTAGACCCGGTAAGAACCCA 59.098 52.381 0.00 0.00 43.54 4.51
3036 3114 2.167281 GAGTTAGACCCGGTAAGAACCC 59.833 54.545 0.00 0.00 43.54 4.11
3037 3115 2.159324 CGAGTTAGACCCGGTAAGAACC 60.159 54.545 0.00 0.00 42.95 3.62
3038 3116 2.489722 ACGAGTTAGACCCGGTAAGAAC 59.510 50.000 0.00 0.00 0.00 3.01
3039 3117 2.795329 ACGAGTTAGACCCGGTAAGAA 58.205 47.619 0.00 0.00 0.00 2.52
3040 3118 2.496899 ACGAGTTAGACCCGGTAAGA 57.503 50.000 0.00 0.00 0.00 2.10
3041 3119 2.615912 CCTACGAGTTAGACCCGGTAAG 59.384 54.545 0.00 0.00 0.00 2.34
3042 3120 2.026262 ACCTACGAGTTAGACCCGGTAA 60.026 50.000 0.00 0.00 0.00 2.85
3043 3121 1.559682 ACCTACGAGTTAGACCCGGTA 59.440 52.381 0.00 0.00 0.00 4.02
3044 3122 0.329596 ACCTACGAGTTAGACCCGGT 59.670 55.000 0.00 0.00 0.00 5.28
3045 3123 1.133790 CAACCTACGAGTTAGACCCGG 59.866 57.143 0.00 0.00 0.00 5.73
3046 3124 1.815003 ACAACCTACGAGTTAGACCCG 59.185 52.381 0.00 0.00 0.00 5.28
3047 3125 3.379688 CCTACAACCTACGAGTTAGACCC 59.620 52.174 0.00 0.00 0.00 4.46
3048 3126 3.379688 CCCTACAACCTACGAGTTAGACC 59.620 52.174 0.00 0.00 0.00 3.85
3049 3127 3.379688 CCCCTACAACCTACGAGTTAGAC 59.620 52.174 0.00 0.00 0.00 2.59
3050 3128 3.010584 ACCCCTACAACCTACGAGTTAGA 59.989 47.826 0.00 0.00 0.00 2.10
3051 3129 3.129988 CACCCCTACAACCTACGAGTTAG 59.870 52.174 0.00 0.00 0.00 2.34
3052 3130 3.091545 CACCCCTACAACCTACGAGTTA 58.908 50.000 0.00 0.00 0.00 2.24
3053 3131 1.897802 CACCCCTACAACCTACGAGTT 59.102 52.381 0.00 0.00 0.00 3.01
3054 3132 1.553706 CACCCCTACAACCTACGAGT 58.446 55.000 0.00 0.00 0.00 4.18
3055 3133 0.822164 CCACCCCTACAACCTACGAG 59.178 60.000 0.00 0.00 0.00 4.18
3056 3134 0.409092 TCCACCCCTACAACCTACGA 59.591 55.000 0.00 0.00 0.00 3.43
3057 3135 1.206371 CTTCCACCCCTACAACCTACG 59.794 57.143 0.00 0.00 0.00 3.51
3058 3136 1.558294 CCTTCCACCCCTACAACCTAC 59.442 57.143 0.00 0.00 0.00 3.18
3059 3137 1.556238 CCCTTCCACCCCTACAACCTA 60.556 57.143 0.00 0.00 0.00 3.08
3060 3138 0.845102 CCCTTCCACCCCTACAACCT 60.845 60.000 0.00 0.00 0.00 3.50
3061 3139 1.689412 CCCTTCCACCCCTACAACC 59.311 63.158 0.00 0.00 0.00 3.77
3062 3140 1.689412 CCCCTTCCACCCCTACAAC 59.311 63.158 0.00 0.00 0.00 3.32
3063 3141 1.542881 CCCCCTTCCACCCCTACAA 60.543 63.158 0.00 0.00 0.00 2.41
3064 3142 2.126372 CCCCCTTCCACCCCTACA 59.874 66.667 0.00 0.00 0.00 2.74
3065 3143 3.417779 GCCCCCTTCCACCCCTAC 61.418 72.222 0.00 0.00 0.00 3.18
3066 3144 3.217030 AAGCCCCCTTCCACCCCTA 62.217 63.158 0.00 0.00 0.00 3.53
3067 3145 4.635963 AAGCCCCCTTCCACCCCT 62.636 66.667 0.00 0.00 0.00 4.79
3068 3146 4.382541 CAAGCCCCCTTCCACCCC 62.383 72.222 0.00 0.00 0.00 4.95
3069 3147 4.382541 CCAAGCCCCCTTCCACCC 62.383 72.222 0.00 0.00 0.00 4.61
3079 3157 4.344865 TTCCTCCACGCCAAGCCC 62.345 66.667 0.00 0.00 0.00 5.19
3080 3158 2.747855 CTTCCTCCACGCCAAGCC 60.748 66.667 0.00 0.00 0.00 4.35
3081 3159 2.747855 CCTTCCTCCACGCCAAGC 60.748 66.667 0.00 0.00 0.00 4.01
3082 3160 2.747855 GCCTTCCTCCACGCCAAG 60.748 66.667 0.00 0.00 0.00 3.61
3083 3161 4.697756 CGCCTTCCTCCACGCCAA 62.698 66.667 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.