Multiple sequence alignment - TraesCS7D01G307800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G307800 chr7D 100.000 3225 0 0 1 3225 390086221 390082997 0.000000e+00 5956.0
1 TraesCS7D01G307800 chr7B 93.818 1278 52 8 1011 2280 385603493 385602235 0.000000e+00 1897.0
2 TraesCS7D01G307800 chr7B 82.319 526 55 19 2325 2831 385602239 385601733 3.850000e-114 422.0
3 TraesCS7D01G307800 chr7A 94.214 1227 55 9 857 2068 441130122 441128897 0.000000e+00 1858.0
4 TraesCS7D01G307800 chr7A 91.667 108 3 5 2055 2162 441120621 441120520 9.320000e-31 145.0
5 TraesCS7D01G307800 chr7A 80.315 127 12 11 68 187 23790450 23790570 2.060000e-12 84.2
6 TraesCS7D01G307800 chr1A 88.164 828 61 16 60 858 543951956 543952775 0.000000e+00 952.0
7 TraesCS7D01G307800 chr2B 84.489 793 96 18 71 856 669671276 669672048 0.000000e+00 758.0
8 TraesCS7D01G307800 chr2B 95.238 42 2 0 2769 2810 38847963 38847922 2.080000e-07 67.6
9 TraesCS7D01G307800 chr5A 83.571 140 17 6 61 194 490050243 490050382 3.380000e-25 126.0
10 TraesCS7D01G307800 chr5A 82.308 130 19 3 61 188 453842615 453842742 3.400000e-20 110.0
11 TraesCS7D01G307800 chr4D 83.206 131 18 3 60 188 21698336 21698208 2.030000e-22 117.0
12 TraesCS7D01G307800 chr6A 80.833 120 22 1 61 179 421775864 421775745 3.430000e-15 93.5
13 TraesCS7D01G307800 chr5B 87.671 73 9 0 59 131 280467642 280467714 5.730000e-13 86.1
14 TraesCS7D01G307800 chr3B 95.000 40 2 0 2771 2810 68897742 68897781 2.690000e-06 63.9
15 TraesCS7D01G307800 chr2D 92.857 42 3 0 2769 2810 558899829 558899788 9.660000e-06 62.1
16 TraesCS7D01G307800 chr2D 97.059 34 1 0 2844 2877 170819819 170819786 1.250000e-04 58.4
17 TraesCS7D01G307800 chr6B 100.000 28 0 0 2770 2797 336252157 336252130 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G307800 chr7D 390082997 390086221 3224 True 5956.0 5956 100.0000 1 3225 1 chr7D.!!$R1 3224
1 TraesCS7D01G307800 chr7B 385601733 385603493 1760 True 1159.5 1897 88.0685 1011 2831 2 chr7B.!!$R1 1820
2 TraesCS7D01G307800 chr7A 441128897 441130122 1225 True 1858.0 1858 94.2140 857 2068 1 chr7A.!!$R2 1211
3 TraesCS7D01G307800 chr1A 543951956 543952775 819 False 952.0 952 88.1640 60 858 1 chr1A.!!$F1 798
4 TraesCS7D01G307800 chr2B 669671276 669672048 772 False 758.0 758 84.4890 71 856 1 chr2B.!!$F1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 677 0.043183 TGGATTGAGAGAGGCCAGGA 59.957 55.0 5.01 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2349 0.038166 ACCGTAACTCCCAGTCCGTA 59.962 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.801547 AGAACATGAAAAATGATTACAAGCG 57.198 32.000 0.00 0.00 0.00 4.68
48 49 7.370383 AGAACATGAAAAATGATTACAAGCGT 58.630 30.769 0.00 0.00 0.00 5.07
49 50 7.867403 AGAACATGAAAAATGATTACAAGCGTT 59.133 29.630 0.00 0.00 0.00 4.84
50 51 7.945033 ACATGAAAAATGATTACAAGCGTTT 57.055 28.000 0.00 0.00 35.26 3.60
51 52 8.364129 ACATGAAAAATGATTACAAGCGTTTT 57.636 26.923 0.00 4.71 43.10 2.43
55 56 6.779115 AAAATGATTACAAGCGTTTTTCCC 57.221 33.333 4.71 0.00 39.63 3.97
56 57 5.722021 AATGATTACAAGCGTTTTTCCCT 57.278 34.783 0.00 0.00 0.00 4.20
57 58 5.722021 ATGATTACAAGCGTTTTTCCCTT 57.278 34.783 0.00 0.00 0.00 3.95
58 59 5.523438 TGATTACAAGCGTTTTTCCCTTT 57.477 34.783 0.00 0.00 0.00 3.11
137 138 3.643159 CATTGGATGGACATGCTGATG 57.357 47.619 5.43 6.02 35.49 3.07
181 186 0.261696 AACCTCCCTTTGCAACAGGT 59.738 50.000 19.68 15.76 39.26 4.00
198 206 1.008538 GTGTGTTGCAGAAAGGCCG 60.009 57.895 0.00 0.00 0.00 6.13
199 207 1.453015 TGTGTTGCAGAAAGGCCGT 60.453 52.632 0.00 0.00 0.00 5.68
207 215 2.251371 GAAAGGCCGTCGCAACAC 59.749 61.111 0.00 0.00 36.38 3.32
283 296 5.861222 CAAAAAGGTCTTGTTGCAGTTTT 57.139 34.783 1.21 0.00 31.81 2.43
310 323 2.418368 TGCAACAGAGGTCTTGTTGT 57.582 45.000 16.57 0.00 43.24 3.32
320 333 6.539103 ACAGAGGTCTTGTTGTAGAAACTTTC 59.461 38.462 0.00 0.00 0.00 2.62
347 361 2.314323 CAAAGCCCTTTTGCAACACT 57.686 45.000 0.00 0.00 39.71 3.55
423 438 1.374252 ACCGAGTCGCCATTGTCAC 60.374 57.895 7.12 0.00 0.00 3.67
428 446 0.973632 AGTCGCCATTGTCACCTGTA 59.026 50.000 0.00 0.00 0.00 2.74
447 465 1.588239 ATTCTGATGAGGTCTGGGCA 58.412 50.000 0.00 0.00 0.00 5.36
473 508 0.243095 ACGAAGTTCCGTAGAGGTGC 59.757 55.000 0.00 0.00 37.78 5.01
495 530 2.305927 CCCCTTCCTTTGAAGCACTCTA 59.694 50.000 0.00 0.00 45.53 2.43
529 564 1.739562 GCTCTAGTTGCAGCAGCGT 60.740 57.895 2.55 0.00 46.23 5.07
530 565 1.294659 GCTCTAGTTGCAGCAGCGTT 61.295 55.000 2.55 0.00 46.23 4.84
531 566 0.441533 CTCTAGTTGCAGCAGCGTTG 59.558 55.000 2.55 0.00 46.23 4.10
552 587 2.693762 GCATGCTTTCCTGCAGCGA 61.694 57.895 11.37 4.33 46.71 4.93
642 677 0.043183 TGGATTGAGAGAGGCCAGGA 59.957 55.000 5.01 0.00 0.00 3.86
646 683 1.566211 TTGAGAGAGGCCAGGAAGAG 58.434 55.000 5.01 0.00 0.00 2.85
658 695 2.260822 CAGGAAGAGAGAAGTTGGGGA 58.739 52.381 0.00 0.00 0.00 4.81
683 720 5.790618 TCAAAATTAGAGGGAGAGGAAAGGA 59.209 40.000 0.00 0.00 0.00 3.36
684 721 6.448387 TCAAAATTAGAGGGAGAGGAAAGGAT 59.552 38.462 0.00 0.00 0.00 3.24
686 723 5.903198 ATTAGAGGGAGAGGAAAGGATTG 57.097 43.478 0.00 0.00 0.00 2.67
757 794 8.291032 CGTGTAGAACTATAGATAAGGTTGGAG 58.709 40.741 6.78 0.00 0.00 3.86
766 803 1.213296 TAAGGTTGGAGGGGAGATGC 58.787 55.000 0.00 0.00 0.00 3.91
782 819 4.106925 GCAGAGGGTGGGCCAGAG 62.107 72.222 6.40 0.00 36.17 3.35
794 831 3.083349 CCAGAGGGGACGCATGGA 61.083 66.667 0.00 0.00 40.01 3.41
820 857 3.438360 GCATAAGGCGGTTGATTTTCAG 58.562 45.455 0.00 0.00 0.00 3.02
925 964 2.604174 GGTCAACAACCGCAGTCCG 61.604 63.158 0.00 0.00 38.58 4.79
926 965 2.970324 TCAACAACCGCAGTCCGC 60.970 61.111 0.00 0.00 35.03 5.54
937 976 2.202703 AGTCCGCGCGGTTATGAC 60.203 61.111 44.16 34.19 36.47 3.06
943 983 0.588730 CGCGCGGTTATGACAATTGG 60.589 55.000 24.84 0.00 0.00 3.16
944 984 0.248458 GCGCGGTTATGACAATTGGG 60.248 55.000 8.83 0.00 0.00 4.12
956 996 9.160496 GTTATGACAATTGGGCATTTAAATTCA 57.840 29.630 17.55 5.63 0.00 2.57
965 1005 8.825667 TTGGGCATTTAAATTCAAAAGTAGAC 57.174 30.769 0.00 0.00 0.00 2.59
966 1006 7.382898 TGGGCATTTAAATTCAAAAGTAGACC 58.617 34.615 0.00 0.00 0.00 3.85
968 1008 8.745590 GGGCATTTAAATTCAAAAGTAGACCTA 58.254 33.333 0.00 0.00 0.00 3.08
984 1031 6.847567 AGTAGACCTATCTTCTCTAGAGTCCA 59.152 42.308 19.21 4.86 36.02 4.02
993 1040 4.374689 TCTCTAGAGTCCAGACACAAGT 57.625 45.455 19.21 0.00 0.00 3.16
995 1042 5.247084 TCTCTAGAGTCCAGACACAAGTAC 58.753 45.833 19.21 0.00 0.00 2.73
996 1043 4.333690 TCTAGAGTCCAGACACAAGTACC 58.666 47.826 0.00 0.00 0.00 3.34
998 1045 3.305720 AGAGTCCAGACACAAGTACCAA 58.694 45.455 0.00 0.00 0.00 3.67
999 1046 3.322254 AGAGTCCAGACACAAGTACCAAG 59.678 47.826 0.00 0.00 0.00 3.61
1000 1047 2.143925 GTCCAGACACAAGTACCAAGC 58.856 52.381 0.00 0.00 0.00 4.01
1001 1048 1.071699 TCCAGACACAAGTACCAAGCC 59.928 52.381 0.00 0.00 0.00 4.35
1002 1049 1.072331 CCAGACACAAGTACCAAGCCT 59.928 52.381 0.00 0.00 0.00 4.58
1003 1050 2.146342 CAGACACAAGTACCAAGCCTG 58.854 52.381 0.00 0.00 0.00 4.85
1004 1051 1.768870 AGACACAAGTACCAAGCCTGT 59.231 47.619 0.00 0.00 0.00 4.00
1007 1054 3.933332 GACACAAGTACCAAGCCTGTATC 59.067 47.826 0.00 0.00 0.00 2.24
1009 1056 3.935203 CACAAGTACCAAGCCTGTATCTG 59.065 47.826 0.00 0.00 0.00 2.90
1021 1072 7.362834 CCAAGCCTGTATCTGTCTCTCTATATG 60.363 44.444 0.00 0.00 0.00 1.78
1024 1075 8.556589 AGCCTGTATCTGTCTCTCTATATGTAT 58.443 37.037 0.00 0.00 0.00 2.29
1488 1539 1.153667 CGAGCTTGTCAGGAGGAGC 60.154 63.158 0.00 0.00 35.42 4.70
1566 1617 2.505118 GACGTCTGCAGCGACCTC 60.505 66.667 28.70 16.51 0.00 3.85
1572 1623 2.601666 TGCAGCGACCTCCTCACT 60.602 61.111 0.00 0.00 0.00 3.41
1638 1689 2.046314 GGCTACGGCAAGCAGGAA 60.046 61.111 10.58 0.00 44.64 3.36
1973 2024 3.482783 GTGCAAGAGCCTCGACGC 61.483 66.667 0.00 0.00 41.13 5.19
2094 2145 1.203237 TCTCCTGTCCTTTCCTGCTCT 60.203 52.381 0.00 0.00 0.00 4.09
2095 2146 0.979665 TCCTGTCCTTTCCTGCTCTG 59.020 55.000 0.00 0.00 0.00 3.35
2096 2147 0.979665 CCTGTCCTTTCCTGCTCTGA 59.020 55.000 0.00 0.00 0.00 3.27
2097 2148 1.066286 CCTGTCCTTTCCTGCTCTGAG 60.066 57.143 0.00 0.00 0.00 3.35
2098 2149 1.898472 CTGTCCTTTCCTGCTCTGAGA 59.102 52.381 9.28 0.00 0.00 3.27
2099 2150 2.301296 CTGTCCTTTCCTGCTCTGAGAA 59.699 50.000 9.28 0.00 0.00 2.87
2100 2151 2.301296 TGTCCTTTCCTGCTCTGAGAAG 59.699 50.000 9.28 7.36 0.00 2.85
2101 2152 2.564947 GTCCTTTCCTGCTCTGAGAAGA 59.435 50.000 14.50 1.10 0.00 2.87
2102 2153 3.007398 GTCCTTTCCTGCTCTGAGAAGAA 59.993 47.826 14.50 7.22 0.00 2.52
2103 2154 3.260380 TCCTTTCCTGCTCTGAGAAGAAG 59.740 47.826 14.50 10.15 0.00 2.85
2104 2155 3.260380 CCTTTCCTGCTCTGAGAAGAAGA 59.740 47.826 14.50 0.92 0.00 2.87
2105 2156 4.262808 CCTTTCCTGCTCTGAGAAGAAGAA 60.263 45.833 14.50 7.19 0.00 2.52
2106 2157 4.533919 TTCCTGCTCTGAGAAGAAGAAG 57.466 45.455 14.50 0.00 0.00 2.85
2107 2158 2.233431 TCCTGCTCTGAGAAGAAGAAGC 59.767 50.000 14.50 0.00 0.00 3.86
2110 2161 3.661944 TGCTCTGAGAAGAAGAAGCAAG 58.338 45.455 9.28 0.00 30.27 4.01
2121 2172 2.777832 AGAAGCAAGGAAGGTAGCAG 57.222 50.000 0.00 0.00 0.00 4.24
2186 2237 4.826600 GCAACACTGCGACATGAC 57.173 55.556 0.00 0.00 39.20 3.06
2187 2238 1.207593 GCAACACTGCGACATGACC 59.792 57.895 0.00 0.00 39.20 4.02
2189 2240 1.229428 CAACACTGCGACATGACCTT 58.771 50.000 0.00 0.00 0.00 3.50
2190 2241 1.603802 CAACACTGCGACATGACCTTT 59.396 47.619 0.00 0.00 0.00 3.11
2191 2242 2.805671 CAACACTGCGACATGACCTTTA 59.194 45.455 0.00 0.00 0.00 1.85
2193 2244 3.674997 ACACTGCGACATGACCTTTATT 58.325 40.909 0.00 0.00 0.00 1.40
2195 2246 4.083324 ACACTGCGACATGACCTTTATTTG 60.083 41.667 0.00 0.00 0.00 2.32
2196 2247 3.119849 ACTGCGACATGACCTTTATTTGC 60.120 43.478 0.00 0.00 0.00 3.68
2197 2248 2.816672 TGCGACATGACCTTTATTTGCA 59.183 40.909 0.00 0.00 0.00 4.08
2198 2249 3.171277 GCGACATGACCTTTATTTGCAC 58.829 45.455 0.00 0.00 0.00 4.57
2199 2250 3.758300 CGACATGACCTTTATTTGCACC 58.242 45.455 0.00 0.00 0.00 5.01
2200 2251 3.190327 CGACATGACCTTTATTTGCACCA 59.810 43.478 0.00 0.00 0.00 4.17
2201 2252 4.672542 CGACATGACCTTTATTTGCACCAG 60.673 45.833 0.00 0.00 0.00 4.00
2202 2253 3.056607 ACATGACCTTTATTTGCACCAGC 60.057 43.478 0.00 0.00 42.57 4.85
2213 2272 3.861341 GCACCAGCAAGATACCAGA 57.139 52.632 0.00 0.00 41.58 3.86
2214 2273 2.338577 GCACCAGCAAGATACCAGAT 57.661 50.000 0.00 0.00 41.58 2.90
2229 2288 9.614792 AAGATACCAGATTGTGTTCCTAAATAC 57.385 33.333 0.00 0.00 0.00 1.89
2230 2289 8.768397 AGATACCAGATTGTGTTCCTAAATACA 58.232 33.333 0.00 0.00 35.04 2.29
2231 2290 8.964476 ATACCAGATTGTGTTCCTAAATACAG 57.036 34.615 0.00 0.00 37.72 2.74
2232 2291 6.779860 ACCAGATTGTGTTCCTAAATACAGT 58.220 36.000 0.00 0.00 37.72 3.55
2233 2292 7.913789 ACCAGATTGTGTTCCTAAATACAGTA 58.086 34.615 0.00 0.00 37.72 2.74
2275 2334 0.404040 TTGTGGCTGGAAAGGGGTAG 59.596 55.000 0.00 0.00 0.00 3.18
2276 2335 0.770557 TGTGGCTGGAAAGGGGTAGT 60.771 55.000 0.00 0.00 0.00 2.73
2277 2336 0.322546 GTGGCTGGAAAGGGGTAGTG 60.323 60.000 0.00 0.00 0.00 2.74
2278 2337 0.474854 TGGCTGGAAAGGGGTAGTGA 60.475 55.000 0.00 0.00 0.00 3.41
2279 2338 0.919710 GGCTGGAAAGGGGTAGTGAT 59.080 55.000 0.00 0.00 0.00 3.06
2280 2339 1.408822 GGCTGGAAAGGGGTAGTGATG 60.409 57.143 0.00 0.00 0.00 3.07
2281 2340 2.019156 GCTGGAAAGGGGTAGTGATGC 61.019 57.143 0.00 0.00 0.00 3.91
2282 2341 1.561542 CTGGAAAGGGGTAGTGATGCT 59.438 52.381 0.00 0.00 0.00 3.79
2283 2342 2.771943 CTGGAAAGGGGTAGTGATGCTA 59.228 50.000 0.00 0.00 0.00 3.49
2294 2353 3.247006 AGTGATGCTACAGGTTTACGG 57.753 47.619 0.00 0.00 0.00 4.02
2295 2354 2.829720 AGTGATGCTACAGGTTTACGGA 59.170 45.455 0.00 0.00 0.00 4.69
2296 2355 2.928116 GTGATGCTACAGGTTTACGGAC 59.072 50.000 0.00 0.00 0.00 4.79
2297 2356 2.829720 TGATGCTACAGGTTTACGGACT 59.170 45.455 0.00 0.00 0.00 3.85
2298 2357 2.736144 TGCTACAGGTTTACGGACTG 57.264 50.000 0.00 0.00 38.19 3.51
2299 2358 1.274167 TGCTACAGGTTTACGGACTGG 59.726 52.381 0.00 0.00 36.57 4.00
2300 2359 1.405121 GCTACAGGTTTACGGACTGGG 60.405 57.143 0.00 0.00 36.57 4.45
2301 2360 2.173519 CTACAGGTTTACGGACTGGGA 58.826 52.381 0.00 0.00 36.57 4.37
2302 2361 0.974383 ACAGGTTTACGGACTGGGAG 59.026 55.000 0.00 0.00 36.57 4.30
2303 2362 0.974383 CAGGTTTACGGACTGGGAGT 59.026 55.000 0.00 0.00 0.00 3.85
2304 2363 1.346722 CAGGTTTACGGACTGGGAGTT 59.653 52.381 0.00 0.00 0.00 3.01
2305 2364 2.564062 CAGGTTTACGGACTGGGAGTTA 59.436 50.000 0.00 0.00 0.00 2.24
2306 2365 2.564504 AGGTTTACGGACTGGGAGTTAC 59.435 50.000 0.00 0.00 0.00 2.50
2307 2366 2.599659 GTTTACGGACTGGGAGTTACG 58.400 52.381 0.00 0.00 35.81 3.18
2308 2367 1.176527 TTACGGACTGGGAGTTACGG 58.823 55.000 0.00 0.00 34.62 4.02
2309 2368 0.038166 TACGGACTGGGAGTTACGGT 59.962 55.000 0.00 0.00 34.62 4.83
2310 2369 1.214589 CGGACTGGGAGTTACGGTG 59.785 63.158 0.00 0.00 0.00 4.94
2311 2370 1.246056 CGGACTGGGAGTTACGGTGA 61.246 60.000 0.00 0.00 0.00 4.02
2312 2371 0.245813 GGACTGGGAGTTACGGTGAC 59.754 60.000 0.00 0.00 0.00 3.67
2313 2372 0.963962 GACTGGGAGTTACGGTGACA 59.036 55.000 5.81 0.00 0.00 3.58
2314 2373 0.677842 ACTGGGAGTTACGGTGACAC 59.322 55.000 5.81 0.00 0.00 3.67
2315 2374 0.677288 CTGGGAGTTACGGTGACACA 59.323 55.000 8.08 1.22 0.00 3.72
2316 2375 1.275291 CTGGGAGTTACGGTGACACAT 59.725 52.381 8.08 0.00 0.00 3.21
2317 2376 1.274167 TGGGAGTTACGGTGACACATC 59.726 52.381 8.08 0.00 0.00 3.06
2318 2377 1.274167 GGGAGTTACGGTGACACATCA 59.726 52.381 8.08 0.00 0.00 3.07
2359 2418 6.183360 ACCTTGCCTCAAAATCTGATTGAAAA 60.183 34.615 3.22 0.00 36.43 2.29
2363 2422 5.406477 GCCTCAAAATCTGATTGAAAACCAC 59.594 40.000 3.22 0.00 36.43 4.16
2368 2427 7.986320 TCAAAATCTGATTGAAAACCACATGTT 59.014 29.630 3.22 0.00 34.04 2.71
2369 2428 7.951530 AAATCTGATTGAAAACCACATGTTC 57.048 32.000 3.22 0.00 35.67 3.18
2387 2446 3.078837 GTTCGAAGGGGTTTCTTGCATA 58.921 45.455 0.00 0.00 33.44 3.14
2404 2470 2.934553 GCATAAACGTTGTACTCCCTCC 59.065 50.000 0.00 0.00 0.00 4.30
2405 2471 3.618019 GCATAAACGTTGTACTCCCTCCA 60.618 47.826 0.00 0.00 0.00 3.86
2409 2475 2.537143 ACGTTGTACTCCCTCCAATCT 58.463 47.619 0.00 0.00 0.00 2.40
2516 2584 0.597377 GTTCTTTGTTTGCTGGGGCG 60.597 55.000 0.00 0.00 42.25 6.13
2517 2585 1.040339 TTCTTTGTTTGCTGGGGCGT 61.040 50.000 0.00 0.00 42.25 5.68
2522 2590 2.671619 TTTGCTGGGGCGTGCTAC 60.672 61.111 0.00 0.00 42.25 3.58
2528 2596 4.509737 GGGGCGTGCTACGAGTCC 62.510 72.222 11.94 9.19 46.05 3.85
2535 2603 4.509737 GCTACGAGTCCACGGGCC 62.510 72.222 0.00 0.00 37.61 5.80
2536 2604 3.066190 CTACGAGTCCACGGGCCA 61.066 66.667 4.39 0.00 37.61 5.36
2559 2633 0.609131 AAAGATTGGCTGGGTCACGG 60.609 55.000 0.00 0.00 0.00 4.94
2560 2634 2.438434 GATTGGCTGGGTCACGGG 60.438 66.667 0.00 0.00 0.00 5.28
2578 2652 1.689352 GGCGGTTCGGTTGTATGACG 61.689 60.000 0.00 0.00 0.00 4.35
2582 2656 1.136169 GGTTCGGTTGTATGACGCAAC 60.136 52.381 0.00 0.00 43.78 4.17
2583 2657 1.796459 GTTCGGTTGTATGACGCAACT 59.204 47.619 7.88 0.00 43.93 3.16
2585 2659 1.271379 TCGGTTGTATGACGCAACTCT 59.729 47.619 7.88 0.00 43.93 3.24
2586 2660 2.488937 TCGGTTGTATGACGCAACTCTA 59.511 45.455 7.88 0.00 43.93 2.43
2587 2661 3.129813 TCGGTTGTATGACGCAACTCTAT 59.870 43.478 7.88 0.00 43.93 1.98
2588 2662 3.863424 CGGTTGTATGACGCAACTCTATT 59.137 43.478 7.88 0.00 43.93 1.73
2589 2663 4.328983 CGGTTGTATGACGCAACTCTATTT 59.671 41.667 7.88 0.00 43.93 1.40
2590 2664 5.163893 CGGTTGTATGACGCAACTCTATTTT 60.164 40.000 7.88 0.00 43.93 1.82
2593 2667 7.360946 GGTTGTATGACGCAACTCTATTTTTCT 60.361 37.037 7.88 0.00 43.93 2.52
2594 2668 7.060600 TGTATGACGCAACTCTATTTTTCTG 57.939 36.000 0.00 0.00 0.00 3.02
2603 2679 6.142958 GCAACTCTATTTTTCTGCAACAAGAC 59.857 38.462 0.00 0.00 0.00 3.01
2604 2680 6.942532 ACTCTATTTTTCTGCAACAAGACA 57.057 33.333 0.00 0.00 0.00 3.41
2608 2684 7.771183 TCTATTTTTCTGCAACAAGACACTTT 58.229 30.769 0.00 0.00 0.00 2.66
2615 2691 6.919721 TCTGCAACAAGACACTTTAAAACTT 58.080 32.000 0.00 0.00 0.00 2.66
2625 2701 8.237811 AGACACTTTAAAACTTCATCAACCAT 57.762 30.769 0.00 0.00 0.00 3.55
2632 2708 8.741101 TTAAAACTTCATCAACCATCGAATTG 57.259 30.769 0.00 0.00 0.00 2.32
2637 2713 3.054434 TCATCAACCATCGAATTGGGTCT 60.054 43.478 9.79 0.00 41.35 3.85
2657 2733 6.944862 GGGTCTATTTGCCTTGAAGATATCAT 59.055 38.462 5.32 0.00 38.03 2.45
2688 2764 6.798315 ATCCAGAATATCTTCTTTGCGATG 57.202 37.500 0.00 0.00 39.78 3.84
2691 2767 5.991606 CCAGAATATCTTCTTTGCGATGGTA 59.008 40.000 0.00 0.00 39.78 3.25
2692 2768 6.483307 CCAGAATATCTTCTTTGCGATGGTAA 59.517 38.462 0.00 0.00 39.78 2.85
2693 2769 7.173907 CCAGAATATCTTCTTTGCGATGGTAAT 59.826 37.037 0.00 0.00 39.78 1.89
2694 2770 8.013947 CAGAATATCTTCTTTGCGATGGTAATG 58.986 37.037 0.00 0.00 39.78 1.90
2733 2809 2.791383 TGATGTTTGCAAAACCTCCG 57.209 45.000 14.67 0.00 0.00 4.63
2736 2812 2.285827 TGTTTGCAAAACCTCCGTTG 57.714 45.000 14.67 0.00 30.72 4.10
2766 2842 1.977293 AAGCATCTCCGGCCTCTTCC 61.977 60.000 0.00 0.00 0.00 3.46
2772 2848 4.168291 CCGGCCTCTTCCCTCTGC 62.168 72.222 0.00 0.00 0.00 4.26
2773 2849 3.393970 CGGCCTCTTCCCTCTGCA 61.394 66.667 0.00 0.00 0.00 4.41
2774 2850 2.959484 CGGCCTCTTCCCTCTGCAA 61.959 63.158 0.00 0.00 0.00 4.08
2775 2851 1.377856 GGCCTCTTCCCTCTGCAAC 60.378 63.158 0.00 0.00 0.00 4.17
2776 2852 1.376466 GCCTCTTCCCTCTGCAACA 59.624 57.895 0.00 0.00 0.00 3.33
2777 2853 0.250901 GCCTCTTCCCTCTGCAACAA 60.251 55.000 0.00 0.00 0.00 2.83
2778 2854 1.819305 GCCTCTTCCCTCTGCAACAAA 60.819 52.381 0.00 0.00 0.00 2.83
2779 2855 2.586425 CCTCTTCCCTCTGCAACAAAA 58.414 47.619 0.00 0.00 0.00 2.44
2780 2856 2.294512 CCTCTTCCCTCTGCAACAAAAC 59.705 50.000 0.00 0.00 0.00 2.43
2781 2857 2.294512 CTCTTCCCTCTGCAACAAAACC 59.705 50.000 0.00 0.00 0.00 3.27
2820 2896 2.154462 ACAACATCTTTGGCCTCTTCG 58.846 47.619 3.32 0.00 0.00 3.79
2821 2897 1.135575 CAACATCTTTGGCCTCTTCGC 60.136 52.381 3.32 0.00 0.00 4.70
2828 2904 0.884704 TTGGCCTCTTCGCTGTGTTC 60.885 55.000 3.32 0.00 0.00 3.18
2831 2907 0.246635 GCCTCTTCGCTGTGTTCCTA 59.753 55.000 0.00 0.00 0.00 2.94
2832 2908 1.737363 GCCTCTTCGCTGTGTTCCTAG 60.737 57.143 0.00 0.00 0.00 3.02
2833 2909 1.546476 CCTCTTCGCTGTGTTCCTAGT 59.454 52.381 0.00 0.00 0.00 2.57
2834 2910 2.028930 CCTCTTCGCTGTGTTCCTAGTT 60.029 50.000 0.00 0.00 0.00 2.24
2835 2911 2.989840 CTCTTCGCTGTGTTCCTAGTTG 59.010 50.000 0.00 0.00 0.00 3.16
2836 2912 1.461127 CTTCGCTGTGTTCCTAGTTGC 59.539 52.381 0.00 0.00 0.00 4.17
2837 2913 0.320421 TCGCTGTGTTCCTAGTTGCC 60.320 55.000 0.00 0.00 0.00 4.52
2838 2914 1.298859 CGCTGTGTTCCTAGTTGCCC 61.299 60.000 0.00 0.00 0.00 5.36
2839 2915 0.250727 GCTGTGTTCCTAGTTGCCCA 60.251 55.000 0.00 0.00 0.00 5.36
2840 2916 1.817740 GCTGTGTTCCTAGTTGCCCAA 60.818 52.381 0.00 0.00 0.00 4.12
2841 2917 2.154462 CTGTGTTCCTAGTTGCCCAAG 58.846 52.381 0.00 0.00 0.00 3.61
2842 2918 1.771854 TGTGTTCCTAGTTGCCCAAGA 59.228 47.619 0.00 0.00 0.00 3.02
2843 2919 2.375174 TGTGTTCCTAGTTGCCCAAGAT 59.625 45.455 0.00 0.00 0.00 2.40
2844 2920 3.181434 TGTGTTCCTAGTTGCCCAAGATT 60.181 43.478 0.00 0.00 0.00 2.40
2845 2921 3.826729 GTGTTCCTAGTTGCCCAAGATTT 59.173 43.478 0.00 0.00 0.00 2.17
2846 2922 4.280929 GTGTTCCTAGTTGCCCAAGATTTT 59.719 41.667 0.00 0.00 0.00 1.82
2847 2923 4.898861 TGTTCCTAGTTGCCCAAGATTTTT 59.101 37.500 0.00 0.00 0.00 1.94
2875 2951 7.458409 AACAGATATCATGTTGCAGAAACTT 57.542 32.000 15.40 0.00 39.36 2.66
2876 2952 7.081526 ACAGATATCATGTTGCAGAAACTTC 57.918 36.000 5.32 0.00 39.70 3.01
2877 2953 6.183360 ACAGATATCATGTTGCAGAAACTTCG 60.183 38.462 5.32 0.00 39.70 3.79
2878 2954 2.686558 TCATGTTGCAGAAACTTCGC 57.313 45.000 0.00 0.00 39.70 4.70
2879 2955 1.266718 TCATGTTGCAGAAACTTCGCC 59.733 47.619 0.00 0.00 39.70 5.54
2880 2956 1.001487 CATGTTGCAGAAACTTCGCCA 60.001 47.619 0.00 0.00 39.70 5.69
2881 2957 0.380378 TGTTGCAGAAACTTCGCCAC 59.620 50.000 0.00 4.62 39.70 5.01
2882 2958 0.317854 GTTGCAGAAACTTCGCCACC 60.318 55.000 0.00 0.00 35.75 4.61
2883 2959 1.781025 TTGCAGAAACTTCGCCACCG 61.781 55.000 0.00 0.00 0.00 4.94
2884 2960 2.251642 GCAGAAACTTCGCCACCGT 61.252 57.895 0.00 0.00 35.54 4.83
2885 2961 1.569493 CAGAAACTTCGCCACCGTG 59.431 57.895 0.00 0.00 35.54 4.94
2886 2962 1.145377 AGAAACTTCGCCACCGTGT 59.855 52.632 0.00 0.00 35.54 4.49
2887 2963 0.878961 AGAAACTTCGCCACCGTGTC 60.879 55.000 0.00 0.00 35.54 3.67
2888 2964 2.154427 GAAACTTCGCCACCGTGTCG 62.154 60.000 0.00 0.00 35.54 4.35
2889 2965 2.911332 AAACTTCGCCACCGTGTCGT 62.911 55.000 1.44 0.00 35.54 4.34
2890 2966 3.403057 CTTCGCCACCGTGTCGTG 61.403 66.667 1.44 0.00 35.54 4.35
2905 2981 4.012895 GTGCGCCGACTGTGGTTG 62.013 66.667 4.18 0.00 0.00 3.77
2906 2982 4.539083 TGCGCCGACTGTGGTTGT 62.539 61.111 4.18 0.00 0.00 3.32
2907 2983 3.276846 GCGCCGACTGTGGTTGTT 61.277 61.111 0.00 0.00 0.00 2.83
2908 2984 2.631428 CGCCGACTGTGGTTGTTG 59.369 61.111 0.00 0.00 0.00 3.33
2909 2985 2.177580 CGCCGACTGTGGTTGTTGT 61.178 57.895 0.00 0.00 0.00 3.32
2910 2986 1.647084 GCCGACTGTGGTTGTTGTC 59.353 57.895 0.00 0.00 0.00 3.18
2912 2988 1.931551 CGACTGTGGTTGTTGTCGG 59.068 57.895 6.49 0.00 45.54 4.79
2913 2989 1.647084 GACTGTGGTTGTTGTCGGC 59.353 57.895 0.00 0.00 0.00 5.54
2914 2990 2.101209 GACTGTGGTTGTTGTCGGCG 62.101 60.000 0.00 0.00 0.00 6.46
2915 2991 3.521308 CTGTGGTTGTTGTCGGCGC 62.521 63.158 0.00 0.00 0.00 6.53
2916 2992 4.322385 GTGGTTGTTGTCGGCGCC 62.322 66.667 19.07 19.07 0.00 6.53
2917 2993 4.858680 TGGTTGTTGTCGGCGCCA 62.859 61.111 28.98 11.20 0.00 5.69
2918 2994 3.587933 GGTTGTTGTCGGCGCCAA 61.588 61.111 28.98 4.39 0.00 4.52
2919 2995 2.409651 GTTGTTGTCGGCGCCAAA 59.590 55.556 28.98 14.84 0.00 3.28
2920 2996 1.657181 GTTGTTGTCGGCGCCAAAG 60.657 57.895 28.98 10.81 0.00 2.77
2921 2997 2.840066 TTGTTGTCGGCGCCAAAGG 61.840 57.895 28.98 10.38 0.00 3.11
2922 2998 3.284449 GTTGTCGGCGCCAAAGGT 61.284 61.111 28.98 0.00 0.00 3.50
2923 2999 3.283684 TTGTCGGCGCCAAAGGTG 61.284 61.111 28.98 9.08 36.10 4.00
2935 3011 2.711542 CCAAAGGTGGTGATAGGACAC 58.288 52.381 0.00 0.00 40.42 3.67
2954 3030 4.681978 GGTGAGGTTGACGGCGCT 62.682 66.667 6.90 0.00 0.00 5.92
2955 3031 3.112709 GTGAGGTTGACGGCGCTC 61.113 66.667 6.90 5.58 0.00 5.03
2956 3032 3.303135 TGAGGTTGACGGCGCTCT 61.303 61.111 6.90 0.00 0.00 4.09
2957 3033 2.811317 GAGGTTGACGGCGCTCTG 60.811 66.667 6.90 0.00 0.00 3.35
2958 3034 3.575351 GAGGTTGACGGCGCTCTGT 62.575 63.158 6.90 3.35 33.70 3.41
2959 3035 3.414700 GGTTGACGGCGCTCTGTG 61.415 66.667 6.90 0.00 30.45 3.66
2960 3036 4.077188 GTTGACGGCGCTCTGTGC 62.077 66.667 6.90 0.00 38.45 4.57
2961 3037 4.299547 TTGACGGCGCTCTGTGCT 62.300 61.111 6.90 0.00 39.23 4.40
2962 3038 2.926420 TTGACGGCGCTCTGTGCTA 61.926 57.895 6.90 0.00 39.23 3.49
2963 3039 2.580867 GACGGCGCTCTGTGCTAG 60.581 66.667 6.90 0.00 39.23 3.42
2964 3040 3.343788 GACGGCGCTCTGTGCTAGT 62.344 63.158 6.90 4.21 39.23 2.57
2965 3041 2.882777 CGGCGCTCTGTGCTAGTG 60.883 66.667 7.64 0.00 39.23 2.74
2966 3042 2.262915 GGCGCTCTGTGCTAGTGT 59.737 61.111 7.64 0.00 39.23 3.55
2967 3043 1.807573 GGCGCTCTGTGCTAGTGTC 60.808 63.158 7.64 0.00 39.23 3.67
2968 3044 2.155194 GCGCTCTGTGCTAGTGTCG 61.155 63.158 0.00 0.00 40.11 4.35
2969 3045 2.155194 CGCTCTGTGCTAGTGTCGC 61.155 63.158 0.00 0.00 40.11 5.19
2970 3046 2.155194 GCTCTGTGCTAGTGTCGCG 61.155 63.158 0.00 0.00 38.95 5.87
2971 3047 1.515088 CTCTGTGCTAGTGTCGCGG 60.515 63.158 6.13 0.00 0.00 6.46
2972 3048 1.923227 CTCTGTGCTAGTGTCGCGGA 61.923 60.000 6.13 0.00 0.00 5.54
2973 3049 1.139734 CTGTGCTAGTGTCGCGGAT 59.860 57.895 6.13 0.00 0.00 4.18
2974 3050 0.380733 CTGTGCTAGTGTCGCGGATA 59.619 55.000 6.13 0.00 0.00 2.59
2975 3051 1.001268 CTGTGCTAGTGTCGCGGATAT 60.001 52.381 6.13 0.00 0.00 1.63
2976 3052 1.001706 TGTGCTAGTGTCGCGGATATC 60.002 52.381 6.13 0.00 0.00 1.63
2977 3053 1.001706 GTGCTAGTGTCGCGGATATCA 60.002 52.381 6.13 0.00 0.00 2.15
2978 3054 1.001706 TGCTAGTGTCGCGGATATCAC 60.002 52.381 6.13 8.56 0.00 3.06
2979 3055 1.001706 GCTAGTGTCGCGGATATCACA 60.002 52.381 6.13 0.00 33.84 3.58
2980 3056 2.651701 CTAGTGTCGCGGATATCACAC 58.348 52.381 16.14 16.14 39.61 3.82
2981 3057 0.248498 AGTGTCGCGGATATCACACG 60.248 55.000 17.37 10.39 43.28 4.49
2982 3058 0.248336 GTGTCGCGGATATCACACGA 60.248 55.000 6.13 7.40 30.49 4.35
2983 3059 0.666374 TGTCGCGGATATCACACGAT 59.334 50.000 6.13 0.00 34.96 3.73
2984 3060 1.328439 GTCGCGGATATCACACGATC 58.672 55.000 6.13 7.32 34.96 3.69
2985 3061 0.240145 TCGCGGATATCACACGATCC 59.760 55.000 6.13 0.00 38.65 3.36
2986 3062 0.039527 CGCGGATATCACACGATCCA 60.040 55.000 4.83 0.00 41.61 3.41
2987 3063 1.402852 CGCGGATATCACACGATCCAT 60.403 52.381 4.83 0.00 41.61 3.41
2988 3064 2.263077 GCGGATATCACACGATCCATC 58.737 52.381 4.83 0.00 41.61 3.51
2998 3074 2.125912 GATCCATCGATCCGGCCG 60.126 66.667 21.04 21.04 39.29 6.13
2999 3075 3.649277 GATCCATCGATCCGGCCGG 62.649 68.421 39.13 39.13 39.29 6.13
3024 3100 4.849329 GCGTTCGACGGCGGAGAT 62.849 66.667 12.58 0.00 42.82 2.75
3025 3101 2.651232 CGTTCGACGGCGGAGATC 60.651 66.667 12.58 8.25 38.08 2.75
3026 3102 2.278661 GTTCGACGGCGGAGATCC 60.279 66.667 12.58 0.00 38.28 3.36
3027 3103 3.524606 TTCGACGGCGGAGATCCC 61.525 66.667 12.58 0.00 38.28 3.85
3055 3131 2.280592 GCCCAACGACGACAACCT 60.281 61.111 0.00 0.00 0.00 3.50
3056 3132 2.604174 GCCCAACGACGACAACCTG 61.604 63.158 0.00 0.00 0.00 4.00
3057 3133 2.604174 CCCAACGACGACAACCTGC 61.604 63.158 0.00 0.00 0.00 4.85
3058 3134 1.885388 CCAACGACGACAACCTGCA 60.885 57.895 0.00 0.00 0.00 4.41
3059 3135 1.564622 CAACGACGACAACCTGCAG 59.435 57.895 6.78 6.78 0.00 4.41
3060 3136 1.594293 AACGACGACAACCTGCAGG 60.594 57.895 31.60 31.60 42.17 4.85
3061 3137 3.414700 CGACGACAACCTGCAGGC 61.415 66.667 33.06 15.27 39.32 4.85
3062 3138 3.414700 GACGACAACCTGCAGGCG 61.415 66.667 33.06 27.67 39.32 5.52
3063 3139 4.988598 ACGACAACCTGCAGGCGG 62.989 66.667 33.06 25.64 39.32 6.13
3064 3140 4.988598 CGACAACCTGCAGGCGGT 62.989 66.667 33.06 28.70 39.32 5.68
3065 3141 3.357079 GACAACCTGCAGGCGGTG 61.357 66.667 33.06 27.40 39.32 4.94
3066 3142 4.954970 ACAACCTGCAGGCGGTGG 62.955 66.667 33.06 18.79 39.32 4.61
3074 3150 2.360350 CAGGCGGTGGCACTCAAT 60.360 61.111 18.45 0.00 42.47 2.57
3075 3151 1.973281 CAGGCGGTGGCACTCAATT 60.973 57.895 18.45 0.00 42.47 2.32
3076 3152 1.973281 AGGCGGTGGCACTCAATTG 60.973 57.895 18.45 0.00 42.47 2.32
3077 3153 1.971167 GGCGGTGGCACTCAATTGA 60.971 57.895 18.45 8.12 42.47 2.57
3078 3154 1.926511 GGCGGTGGCACTCAATTGAG 61.927 60.000 29.74 29.74 42.47 3.02
3079 3155 1.926511 GCGGTGGCACTCAATTGAGG 61.927 60.000 33.11 23.84 46.13 3.86
3080 3156 1.885871 GGTGGCACTCAATTGAGGC 59.114 57.895 33.11 29.91 46.13 4.70
3081 3157 0.895100 GGTGGCACTCAATTGAGGCA 60.895 55.000 33.11 24.93 46.13 4.75
3082 3158 0.961019 GTGGCACTCAATTGAGGCAA 59.039 50.000 33.11 24.72 46.13 4.52
3083 3159 1.068055 GTGGCACTCAATTGAGGCAAG 60.068 52.381 33.11 21.95 46.13 4.01
3084 3160 0.529378 GGCACTCAATTGAGGCAAGG 59.471 55.000 33.11 19.68 46.13 3.61
3085 3161 0.529378 GCACTCAATTGAGGCAAGGG 59.471 55.000 33.11 18.24 46.13 3.95
3086 3162 0.529378 CACTCAATTGAGGCAAGGGC 59.471 55.000 33.11 0.00 46.13 5.19
3087 3163 0.962356 ACTCAATTGAGGCAAGGGCG 60.962 55.000 33.11 11.41 46.13 6.13
3088 3164 1.660560 CTCAATTGAGGCAAGGGCGG 61.661 60.000 25.14 0.00 42.47 6.13
3089 3165 3.070576 AATTGAGGCAAGGGCGGC 61.071 61.111 0.00 0.00 42.47 6.53
3090 3166 3.884704 AATTGAGGCAAGGGCGGCA 62.885 57.895 12.47 0.00 42.47 5.69
3104 3180 4.767255 GGCAGAGCTCCGTGGTGG 62.767 72.222 10.93 0.00 40.09 4.61
3105 3181 4.767255 GCAGAGCTCCGTGGTGGG 62.767 72.222 10.93 0.00 38.76 4.61
3106 3182 4.087892 CAGAGCTCCGTGGTGGGG 62.088 72.222 10.93 0.00 43.42 4.96
3111 3187 4.704833 CTCCGTGGTGGGGCAGTG 62.705 72.222 0.00 0.00 38.76 3.66
3115 3191 3.297620 GTGGTGGGGCAGTGCAAG 61.298 66.667 18.61 0.00 0.00 4.01
3116 3192 4.601794 TGGTGGGGCAGTGCAAGG 62.602 66.667 18.61 0.00 0.00 3.61
3118 3194 4.603535 GTGGGGCAGTGCAAGGGT 62.604 66.667 18.61 0.00 0.00 4.34
3119 3195 4.601794 TGGGGCAGTGCAAGGGTG 62.602 66.667 18.61 0.00 0.00 4.61
3122 3198 4.982701 GGCAGTGCAAGGGTGGCT 62.983 66.667 18.61 0.00 34.08 4.75
3123 3199 3.368571 GCAGTGCAAGGGTGGCTC 61.369 66.667 11.09 0.00 0.00 4.70
3124 3200 2.674380 CAGTGCAAGGGTGGCTCC 60.674 66.667 0.00 0.00 0.00 4.70
3125 3201 4.335647 AGTGCAAGGGTGGCTCCG 62.336 66.667 0.00 0.00 37.00 4.63
3144 3220 3.506096 CGACGCCGAGCAGTAGGA 61.506 66.667 0.00 0.00 38.22 2.94
3145 3221 2.409651 GACGCCGAGCAGTAGGAG 59.590 66.667 0.00 0.00 0.00 3.69
3146 3222 2.045242 ACGCCGAGCAGTAGGAGA 60.045 61.111 0.00 0.00 0.00 3.71
3147 3223 2.054140 GACGCCGAGCAGTAGGAGAG 62.054 65.000 0.00 0.00 0.00 3.20
3148 3224 2.840066 CGCCGAGCAGTAGGAGAGG 61.840 68.421 0.00 0.00 0.00 3.69
3149 3225 1.454111 GCCGAGCAGTAGGAGAGGA 60.454 63.158 0.00 0.00 0.00 3.71
3150 3226 1.452145 GCCGAGCAGTAGGAGAGGAG 61.452 65.000 0.00 0.00 0.00 3.69
3151 3227 0.821711 CCGAGCAGTAGGAGAGGAGG 60.822 65.000 0.00 0.00 0.00 4.30
3152 3228 1.452145 CGAGCAGTAGGAGAGGAGGC 61.452 65.000 0.00 0.00 0.00 4.70
3153 3229 1.452145 GAGCAGTAGGAGAGGAGGCG 61.452 65.000 0.00 0.00 0.00 5.52
3154 3230 1.755008 GCAGTAGGAGAGGAGGCGT 60.755 63.158 0.00 0.00 0.00 5.68
3155 3231 2.010582 GCAGTAGGAGAGGAGGCGTG 62.011 65.000 0.00 0.00 0.00 5.34
3156 3232 1.755008 AGTAGGAGAGGAGGCGTGC 60.755 63.158 0.00 0.00 0.00 5.34
3157 3233 2.052690 GTAGGAGAGGAGGCGTGCA 61.053 63.158 0.00 0.00 0.00 4.57
3158 3234 1.304962 TAGGAGAGGAGGCGTGCAA 60.305 57.895 0.00 0.00 0.00 4.08
3159 3235 0.687757 TAGGAGAGGAGGCGTGCAAT 60.688 55.000 0.00 0.00 0.00 3.56
3160 3236 1.817099 GGAGAGGAGGCGTGCAATG 60.817 63.158 0.00 0.00 0.00 2.82
3161 3237 1.817099 GAGAGGAGGCGTGCAATGG 60.817 63.158 0.00 0.00 0.00 3.16
3162 3238 2.825836 GAGGAGGCGTGCAATGGG 60.826 66.667 0.00 0.00 0.00 4.00
3163 3239 4.431131 AGGAGGCGTGCAATGGGG 62.431 66.667 0.00 0.00 0.00 4.96
3187 3263 2.758737 ACCTCGTCGGGGGTCATC 60.759 66.667 17.31 0.00 36.97 2.92
3188 3264 3.900892 CCTCGTCGGGGGTCATCG 61.901 72.222 2.09 0.00 0.00 3.84
3189 3265 3.900892 CTCGTCGGGGGTCATCGG 61.901 72.222 0.00 0.00 0.00 4.18
3190 3266 4.429522 TCGTCGGGGGTCATCGGA 62.430 66.667 0.00 0.00 0.00 4.55
3191 3267 3.900892 CGTCGGGGGTCATCGGAG 61.901 72.222 0.00 0.00 0.00 4.63
3192 3268 2.441532 GTCGGGGGTCATCGGAGA 60.442 66.667 0.00 0.00 45.75 3.71
3193 3269 2.441532 TCGGGGGTCATCGGAGAC 60.442 66.667 0.29 0.29 42.51 3.36
3204 3280 4.456253 CGGAGACCGGTCGTCGTG 62.456 72.222 30.63 19.75 46.92 4.35
3205 3281 4.112341 GGAGACCGGTCGTCGTGG 62.112 72.222 28.26 0.00 46.92 4.94
3206 3282 3.052082 GAGACCGGTCGTCGTGGA 61.052 66.667 28.26 0.00 46.92 4.02
3207 3283 2.595463 AGACCGGTCGTCGTGGAA 60.595 61.111 28.26 0.00 46.92 3.53
3208 3284 2.429739 GACCGGTCGTCGTGGAAC 60.430 66.667 20.85 0.00 37.11 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.340695 CGCTTGTAATCATTTTTCATGTTCTTA 57.659 29.630 0.00 0.00 0.00 2.10
22 23 7.867403 ACGCTTGTAATCATTTTTCATGTTCTT 59.133 29.630 0.00 0.00 0.00 2.52
23 24 7.370383 ACGCTTGTAATCATTTTTCATGTTCT 58.630 30.769 0.00 0.00 0.00 3.01
24 25 7.566858 ACGCTTGTAATCATTTTTCATGTTC 57.433 32.000 0.00 0.00 0.00 3.18
25 26 7.945033 AACGCTTGTAATCATTTTTCATGTT 57.055 28.000 0.00 0.00 0.00 2.71
26 27 7.945033 AAACGCTTGTAATCATTTTTCATGT 57.055 28.000 0.00 0.00 0.00 3.21
27 28 9.305110 GAAAAACGCTTGTAATCATTTTTCATG 57.695 29.630 12.66 0.00 41.94 3.07
28 29 8.495148 GGAAAAACGCTTGTAATCATTTTTCAT 58.505 29.630 17.10 0.00 43.16 2.57
29 30 7.042389 GGGAAAAACGCTTGTAATCATTTTTCA 60.042 33.333 17.10 0.00 43.16 2.69
30 31 7.170828 AGGGAAAAACGCTTGTAATCATTTTTC 59.829 33.333 10.17 10.17 41.77 2.29
31 32 6.989759 AGGGAAAAACGCTTGTAATCATTTTT 59.010 30.769 0.00 0.00 38.67 1.94
32 33 6.521162 AGGGAAAAACGCTTGTAATCATTTT 58.479 32.000 0.00 0.00 38.67 1.82
33 34 6.096673 AGGGAAAAACGCTTGTAATCATTT 57.903 33.333 0.00 0.00 38.67 2.32
34 35 5.722021 AGGGAAAAACGCTTGTAATCATT 57.278 34.783 0.00 0.00 38.67 2.57
92 93 1.153349 GAGGCGGCGGATCTTTTCT 60.153 57.895 9.78 0.00 0.00 2.52
93 94 2.526120 CGAGGCGGCGGATCTTTTC 61.526 63.158 9.78 0.00 0.00 2.29
132 133 1.066573 GGTAGATCGGATGGCCATCAG 60.067 57.143 39.50 36.15 39.54 2.90
137 138 1.371558 GTGGGTAGATCGGATGGCC 59.628 63.158 0.00 0.00 0.00 5.36
177 182 0.031178 GCCTTTCTGCAACACACCTG 59.969 55.000 0.00 0.00 0.00 4.00
181 186 1.444119 GACGGCCTTTCTGCAACACA 61.444 55.000 0.00 0.00 0.00 3.72
232 240 9.696917 AAAAATTTCTGCAATAAGATCTTCGTT 57.303 25.926 12.24 5.73 0.00 3.85
310 323 6.405397 GGGCTTTGTGAACAAGAAAGTTTCTA 60.405 38.462 18.31 0.00 39.61 2.10
320 333 2.609002 GCAAAAGGGCTTTGTGAACAAG 59.391 45.455 3.33 0.00 45.37 3.16
347 361 1.151679 TGTTTCGGGAACATGGGCA 59.848 52.632 0.00 0.00 43.13 5.36
423 438 3.070734 CCCAGACCTCATCAGAATACAGG 59.929 52.174 0.00 0.00 0.00 4.00
428 446 1.489649 CTGCCCAGACCTCATCAGAAT 59.510 52.381 0.00 0.00 0.00 2.40
447 465 1.518056 TACGGAACTTCGTCGGCACT 61.518 55.000 0.00 0.00 42.82 4.40
515 550 0.950555 CCTCAACGCTGCTGCAACTA 60.951 55.000 16.29 0.00 39.64 2.24
529 564 2.269978 GCAGGAAAGCATGCCTCAA 58.730 52.632 15.66 0.00 45.50 3.02
530 565 4.007457 GCAGGAAAGCATGCCTCA 57.993 55.556 15.66 0.00 45.50 3.86
642 677 5.324832 TTTTGATCCCCAACTTCTCTCTT 57.675 39.130 0.00 0.00 33.85 2.85
646 683 6.319911 CCTCTAATTTTGATCCCCAACTTCTC 59.680 42.308 0.00 0.00 33.85 2.87
658 695 6.448387 TCCTTTCCTCTCCCTCTAATTTTGAT 59.552 38.462 0.00 0.00 0.00 2.57
683 720 1.229076 GCGGTAACCCCATCCCAAT 59.771 57.895 0.00 0.00 0.00 3.16
684 721 1.926489 AGCGGTAACCCCATCCCAA 60.926 57.895 0.00 0.00 0.00 4.12
686 723 2.192175 CAGCGGTAACCCCATCCC 59.808 66.667 0.00 0.00 0.00 3.85
757 794 2.750657 CCACCCTCTGCATCTCCCC 61.751 68.421 0.00 0.00 0.00 4.81
766 803 3.406200 CCTCTGGCCCACCCTCTG 61.406 72.222 0.00 0.00 33.59 3.35
790 827 4.787871 GCCTTATGCGCTCTCCAT 57.212 55.556 9.73 0.00 0.00 3.41
817 854 2.896854 GGCCGATGAATGCGCTGA 60.897 61.111 9.73 0.00 0.00 4.26
907 946 2.604174 CGGACTGCGGTTGTTGACC 61.604 63.158 0.00 0.00 45.55 4.02
925 964 0.248458 CCCAATTGTCATAACCGCGC 60.248 55.000 0.00 0.00 0.00 6.86
926 965 0.248458 GCCCAATTGTCATAACCGCG 60.248 55.000 0.00 0.00 0.00 6.46
956 996 9.623000 GACTCTAGAGAAGATAGGTCTACTTTT 57.377 37.037 26.57 0.00 33.30 2.27
964 1004 5.430417 TGTCTGGACTCTAGAGAAGATAGGT 59.570 44.000 26.57 1.37 32.41 3.08
965 1005 5.763204 GTGTCTGGACTCTAGAGAAGATAGG 59.237 48.000 26.57 9.06 32.41 2.57
966 1006 6.353323 TGTGTCTGGACTCTAGAGAAGATAG 58.647 44.000 26.57 15.03 32.41 2.08
968 1008 5.186256 TGTGTCTGGACTCTAGAGAAGAT 57.814 43.478 26.57 3.24 32.41 2.40
969 1009 4.642466 TGTGTCTGGACTCTAGAGAAGA 57.358 45.455 26.57 20.10 0.00 2.87
970 1010 4.764823 ACTTGTGTCTGGACTCTAGAGAAG 59.235 45.833 26.57 18.34 33.89 2.85
972 1012 4.374689 ACTTGTGTCTGGACTCTAGAGA 57.625 45.455 26.57 2.97 33.89 3.10
984 1031 1.768870 ACAGGCTTGGTACTTGTGTCT 59.231 47.619 0.00 0.00 0.00 3.41
993 1040 3.954904 GAGAGACAGATACAGGCTTGGTA 59.045 47.826 0.00 0.00 0.00 3.25
995 1042 3.030291 AGAGAGACAGATACAGGCTTGG 58.970 50.000 0.00 0.00 0.00 3.61
996 1043 7.176515 ACATATAGAGAGACAGATACAGGCTTG 59.823 40.741 0.00 0.00 0.00 4.01
998 1045 6.789268 ACATATAGAGAGACAGATACAGGCT 58.211 40.000 0.00 0.00 0.00 4.58
999 1046 8.620416 CATACATATAGAGAGACAGATACAGGC 58.380 40.741 0.00 0.00 0.00 4.85
1000 1047 9.119418 CCATACATATAGAGAGACAGATACAGG 57.881 40.741 0.00 0.00 0.00 4.00
1001 1048 9.898152 TCCATACATATAGAGAGACAGATACAG 57.102 37.037 0.00 0.00 0.00 2.74
1007 1054 8.620416 GCTACATCCATACATATAGAGAGACAG 58.380 40.741 0.00 0.00 0.00 3.51
1009 1056 8.512966 TGCTACATCCATACATATAGAGAGAC 57.487 38.462 0.00 0.00 0.00 3.36
1021 1072 3.559655 TGAATGCGTTGCTACATCCATAC 59.440 43.478 0.00 0.00 0.00 2.39
1024 1075 2.106477 TGAATGCGTTGCTACATCCA 57.894 45.000 0.00 0.00 0.00 3.41
1091 1142 3.055719 CCGCCACCATGGTCACAC 61.056 66.667 16.53 3.56 40.46 3.82
1113 1164 2.582498 CGGGCCGTCTTCGTGATC 60.582 66.667 19.97 0.00 35.01 2.92
1167 1218 4.058124 CGTCACATTGTTTCTTCCTCAGA 58.942 43.478 0.00 0.00 0.00 3.27
1402 1453 1.005394 GGTCCTTCTCGCGGAACAA 60.005 57.895 6.13 0.00 38.17 2.83
1476 1527 2.533435 AGGTGGCTCCTCCTGACA 59.467 61.111 8.62 0.00 44.42 3.58
1488 1539 4.864334 GAGCCGGCATGGAGGTGG 62.864 72.222 31.54 0.00 42.00 4.61
1566 1617 1.443872 CGGGTCGTCGAAAGTGAGG 60.444 63.158 0.00 0.00 0.00 3.86
1572 1623 4.668118 GGTGGCGGGTCGTCGAAA 62.668 66.667 0.00 0.00 32.50 3.46
1633 1684 0.175760 ATGATCACGTCCGGTTCCTG 59.824 55.000 0.00 0.00 0.00 3.86
1638 1689 0.100682 CTTCGATGATCACGTCCGGT 59.899 55.000 0.00 0.00 0.00 5.28
1997 2048 2.048222 CGTGTCGGTCAGCCATGT 60.048 61.111 0.00 0.00 34.09 3.21
2057 2108 1.153349 GAAGGCGGATGTCAGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
2094 2145 3.392616 ACCTTCCTTGCTTCTTCTTCTCA 59.607 43.478 0.00 0.00 0.00 3.27
2095 2146 4.014569 ACCTTCCTTGCTTCTTCTTCTC 57.985 45.455 0.00 0.00 0.00 2.87
2096 2147 4.564613 GCTACCTTCCTTGCTTCTTCTTCT 60.565 45.833 0.00 0.00 0.00 2.85
2097 2148 3.687212 GCTACCTTCCTTGCTTCTTCTTC 59.313 47.826 0.00 0.00 0.00 2.87
2098 2149 3.073062 TGCTACCTTCCTTGCTTCTTCTT 59.927 43.478 0.00 0.00 0.00 2.52
2099 2150 2.639839 TGCTACCTTCCTTGCTTCTTCT 59.360 45.455 0.00 0.00 0.00 2.85
2100 2151 3.006247 CTGCTACCTTCCTTGCTTCTTC 58.994 50.000 0.00 0.00 0.00 2.87
2101 2152 2.877708 GCTGCTACCTTCCTTGCTTCTT 60.878 50.000 0.00 0.00 0.00 2.52
2102 2153 1.339535 GCTGCTACCTTCCTTGCTTCT 60.340 52.381 0.00 0.00 0.00 2.85
2103 2154 1.090728 GCTGCTACCTTCCTTGCTTC 58.909 55.000 0.00 0.00 0.00 3.86
2104 2155 0.322906 GGCTGCTACCTTCCTTGCTT 60.323 55.000 0.00 0.00 0.00 3.91
2105 2156 1.301293 GGCTGCTACCTTCCTTGCT 59.699 57.895 0.00 0.00 0.00 3.91
2106 2157 2.109126 CGGCTGCTACCTTCCTTGC 61.109 63.158 0.00 0.00 0.00 4.01
2107 2158 0.321653 AACGGCTGCTACCTTCCTTG 60.322 55.000 0.00 0.00 0.00 3.61
2110 2161 1.449778 GGAACGGCTGCTACCTTCC 60.450 63.158 0.00 0.00 33.08 3.46
2121 2172 1.314730 TTTCACCTCTTTGGAACGGC 58.685 50.000 0.00 0.00 39.71 5.68
2178 2229 3.190327 TGGTGCAAATAAAGGTCATGTCG 59.810 43.478 0.00 0.00 0.00 4.35
2181 2232 3.514645 GCTGGTGCAAATAAAGGTCATG 58.485 45.455 0.00 0.00 39.41 3.07
2195 2246 2.338577 ATCTGGTATCTTGCTGGTGC 57.661 50.000 0.00 0.00 40.20 5.01
2196 2247 3.376234 CACAATCTGGTATCTTGCTGGTG 59.624 47.826 0.00 0.00 0.00 4.17
2197 2248 3.009473 ACACAATCTGGTATCTTGCTGGT 59.991 43.478 0.00 0.00 0.00 4.00
2198 2249 3.614092 ACACAATCTGGTATCTTGCTGG 58.386 45.455 0.00 0.00 0.00 4.85
2199 2250 4.095483 GGAACACAATCTGGTATCTTGCTG 59.905 45.833 0.00 0.00 0.00 4.41
2200 2251 4.018960 AGGAACACAATCTGGTATCTTGCT 60.019 41.667 0.00 0.00 0.00 3.91
2201 2252 4.265073 AGGAACACAATCTGGTATCTTGC 58.735 43.478 0.00 0.00 0.00 4.01
2202 2253 7.921786 TTTAGGAACACAATCTGGTATCTTG 57.078 36.000 0.00 0.00 0.00 3.02
2205 2264 8.958119 TGTATTTAGGAACACAATCTGGTATC 57.042 34.615 0.00 0.00 0.00 2.24
2253 2312 0.251742 CCCCTTTCCAGCCACAATCA 60.252 55.000 0.00 0.00 0.00 2.57
2254 2313 0.251787 ACCCCTTTCCAGCCACAATC 60.252 55.000 0.00 0.00 0.00 2.67
2275 2334 2.928116 GTCCGTAAACCTGTAGCATCAC 59.072 50.000 0.00 0.00 0.00 3.06
2276 2335 2.829720 AGTCCGTAAACCTGTAGCATCA 59.170 45.455 0.00 0.00 0.00 3.07
2277 2336 3.187700 CAGTCCGTAAACCTGTAGCATC 58.812 50.000 0.00 0.00 0.00 3.91
2278 2337 2.093658 CCAGTCCGTAAACCTGTAGCAT 60.094 50.000 0.00 0.00 0.00 3.79
2279 2338 1.274167 CCAGTCCGTAAACCTGTAGCA 59.726 52.381 0.00 0.00 0.00 3.49
2280 2339 1.405121 CCCAGTCCGTAAACCTGTAGC 60.405 57.143 0.00 0.00 0.00 3.58
2281 2340 2.165845 CTCCCAGTCCGTAAACCTGTAG 59.834 54.545 0.00 0.00 0.00 2.74
2282 2341 2.173519 CTCCCAGTCCGTAAACCTGTA 58.826 52.381 0.00 0.00 0.00 2.74
2283 2342 0.974383 CTCCCAGTCCGTAAACCTGT 59.026 55.000 0.00 0.00 0.00 4.00
2284 2343 0.974383 ACTCCCAGTCCGTAAACCTG 59.026 55.000 0.00 0.00 0.00 4.00
2285 2344 1.725803 AACTCCCAGTCCGTAAACCT 58.274 50.000 0.00 0.00 0.00 3.50
2286 2345 2.672195 CGTAACTCCCAGTCCGTAAACC 60.672 54.545 0.00 0.00 0.00 3.27
2287 2346 2.599659 CGTAACTCCCAGTCCGTAAAC 58.400 52.381 0.00 0.00 0.00 2.01
2288 2347 1.545582 CCGTAACTCCCAGTCCGTAAA 59.454 52.381 0.00 0.00 0.00 2.01
2289 2348 1.176527 CCGTAACTCCCAGTCCGTAA 58.823 55.000 0.00 0.00 0.00 3.18
2290 2349 0.038166 ACCGTAACTCCCAGTCCGTA 59.962 55.000 0.00 0.00 0.00 4.02
2291 2350 1.228675 ACCGTAACTCCCAGTCCGT 60.229 57.895 0.00 0.00 0.00 4.69
2292 2351 1.214589 CACCGTAACTCCCAGTCCG 59.785 63.158 0.00 0.00 0.00 4.79
2293 2352 0.245813 GTCACCGTAACTCCCAGTCC 59.754 60.000 0.00 0.00 0.00 3.85
2294 2353 0.963962 TGTCACCGTAACTCCCAGTC 59.036 55.000 0.00 0.00 0.00 3.51
2295 2354 0.677842 GTGTCACCGTAACTCCCAGT 59.322 55.000 0.00 0.00 0.00 4.00
2296 2355 0.677288 TGTGTCACCGTAACTCCCAG 59.323 55.000 0.00 0.00 0.00 4.45
2297 2356 1.274167 GATGTGTCACCGTAACTCCCA 59.726 52.381 0.00 0.00 0.00 4.37
2298 2357 1.274167 TGATGTGTCACCGTAACTCCC 59.726 52.381 0.00 0.00 0.00 4.30
2299 2358 2.736144 TGATGTGTCACCGTAACTCC 57.264 50.000 0.00 0.00 0.00 3.85
2317 2376 4.209703 GCAAGGTTTTCAATCACATGTGTG 59.790 41.667 24.63 16.73 46.91 3.82
2318 2377 4.370917 GCAAGGTTTTCAATCACATGTGT 58.629 39.130 24.63 10.13 0.00 3.72
2319 2378 3.742369 GGCAAGGTTTTCAATCACATGTG 59.258 43.478 20.18 20.18 0.00 3.21
2320 2379 3.642848 AGGCAAGGTTTTCAATCACATGT 59.357 39.130 0.00 0.00 0.00 3.21
2321 2380 4.240096 GAGGCAAGGTTTTCAATCACATG 58.760 43.478 0.00 0.00 0.00 3.21
2322 2381 3.896888 TGAGGCAAGGTTTTCAATCACAT 59.103 39.130 0.00 0.00 0.00 3.21
2323 2382 3.295093 TGAGGCAAGGTTTTCAATCACA 58.705 40.909 0.00 0.00 0.00 3.58
2338 2397 5.070180 TGGTTTTCAATCAGATTTTGAGGCA 59.930 36.000 0.00 0.00 39.68 4.75
2339 2398 5.406477 GTGGTTTTCAATCAGATTTTGAGGC 59.594 40.000 0.00 0.00 39.68 4.70
2359 2418 0.476771 AACCCCTTCGAACATGTGGT 59.523 50.000 0.00 0.00 0.00 4.16
2363 2422 2.351738 GCAAGAAACCCCTTCGAACATG 60.352 50.000 0.00 0.00 39.22 3.21
2368 2427 3.426787 TTATGCAAGAAACCCCTTCGA 57.573 42.857 0.00 0.00 39.22 3.71
2369 2428 3.669557 CGTTTATGCAAGAAACCCCTTCG 60.670 47.826 17.34 5.64 39.22 3.79
2387 2446 3.326880 AGATTGGAGGGAGTACAACGTTT 59.673 43.478 0.00 0.00 0.00 3.60
2466 2534 5.702209 GCAAATGGGATTTTGATGAACACTT 59.298 36.000 1.33 0.00 38.58 3.16
2471 2539 7.820578 AAAAAGCAAATGGGATTTTGATGAA 57.179 28.000 1.33 0.00 36.58 2.57
2496 2564 0.463620 GCCCCAGCAAACAAAGAACA 59.536 50.000 0.00 0.00 39.53 3.18
2516 2584 2.181021 CCCGTGGACTCGTAGCAC 59.819 66.667 0.00 0.00 0.00 4.40
2517 2585 3.755628 GCCCGTGGACTCGTAGCA 61.756 66.667 0.00 0.00 0.00 3.49
2522 2590 0.391927 TTTATTGGCCCGTGGACTCG 60.392 55.000 0.00 0.00 0.00 4.18
2528 2596 3.163630 CCAATCTTTTATTGGCCCGTG 57.836 47.619 0.00 0.00 41.62 4.94
2535 2603 4.675146 CGTGACCCAGCCAATCTTTTATTG 60.675 45.833 0.00 0.00 0.00 1.90
2536 2604 3.443681 CGTGACCCAGCCAATCTTTTATT 59.556 43.478 0.00 0.00 0.00 1.40
2559 2633 1.689352 CGTCATACAACCGAACCGCC 61.689 60.000 0.00 0.00 0.00 6.13
2560 2634 1.705727 CGTCATACAACCGAACCGC 59.294 57.895 0.00 0.00 0.00 5.68
2561 2635 1.009903 TGCGTCATACAACCGAACCG 61.010 55.000 0.00 0.00 0.00 4.44
2565 2639 1.271379 AGAGTTGCGTCATACAACCGA 59.729 47.619 3.18 0.00 46.85 4.69
2568 2642 7.478667 CAGAAAAATAGAGTTGCGTCATACAAC 59.521 37.037 0.00 0.00 46.18 3.32
2578 2652 6.142958 GTCTTGTTGCAGAAAAATAGAGTTGC 59.857 38.462 0.00 0.00 0.00 4.17
2582 2656 6.963796 AGTGTCTTGTTGCAGAAAAATAGAG 58.036 36.000 0.00 0.00 0.00 2.43
2583 2657 6.942532 AGTGTCTTGTTGCAGAAAAATAGA 57.057 33.333 0.00 0.00 0.00 1.98
2585 2659 9.862371 TTTAAAGTGTCTTGTTGCAGAAAAATA 57.138 25.926 0.00 0.00 0.00 1.40
2586 2660 8.770438 TTTAAAGTGTCTTGTTGCAGAAAAAT 57.230 26.923 0.00 0.00 0.00 1.82
2587 2661 8.491950 GTTTTAAAGTGTCTTGTTGCAGAAAAA 58.508 29.630 0.00 0.00 0.00 1.94
2588 2662 7.870445 AGTTTTAAAGTGTCTTGTTGCAGAAAA 59.130 29.630 0.00 0.00 0.00 2.29
2589 2663 7.375053 AGTTTTAAAGTGTCTTGTTGCAGAAA 58.625 30.769 0.00 0.00 0.00 2.52
2590 2664 6.919721 AGTTTTAAAGTGTCTTGTTGCAGAA 58.080 32.000 0.00 0.00 0.00 3.02
2593 2667 6.682746 TGAAGTTTTAAAGTGTCTTGTTGCA 58.317 32.000 0.00 0.00 0.00 4.08
2594 2668 7.487829 TGATGAAGTTTTAAAGTGTCTTGTTGC 59.512 33.333 0.00 0.00 0.00 4.17
2603 2679 7.359595 TCGATGGTTGATGAAGTTTTAAAGTG 58.640 34.615 0.00 0.00 0.00 3.16
2604 2680 7.504924 TCGATGGTTGATGAAGTTTTAAAGT 57.495 32.000 0.00 0.00 0.00 2.66
2608 2684 7.312154 CCAATTCGATGGTTGATGAAGTTTTA 58.688 34.615 7.13 0.00 35.65 1.52
2615 2691 3.054434 AGACCCAATTCGATGGTTGATGA 60.054 43.478 4.41 0.00 38.91 2.92
2625 2701 3.644966 AGGCAAATAGACCCAATTCGA 57.355 42.857 0.00 0.00 0.00 3.71
2632 2708 6.299141 TGATATCTTCAAGGCAAATAGACCC 58.701 40.000 3.98 0.00 0.00 4.46
2661 2737 7.050377 TCGCAAAGAAGATATTCTGGATTTCT 58.950 34.615 2.78 0.00 0.00 2.52
2662 2738 7.251704 TCGCAAAGAAGATATTCTGGATTTC 57.748 36.000 2.78 0.00 0.00 2.17
2702 2778 9.505995 GTTTTGCAAACATCAATTTGAGATTTT 57.494 25.926 12.39 1.86 41.28 1.82
2704 2780 7.499895 AGGTTTTGCAAACATCAATTTGAGATT 59.500 29.630 12.39 0.00 41.28 2.40
2712 2788 3.069443 ACGGAGGTTTTGCAAACATCAAT 59.931 39.130 12.39 4.10 33.10 2.57
2715 2791 2.793278 ACGGAGGTTTTGCAAACATC 57.207 45.000 12.39 13.49 0.00 3.06
2716 2792 2.820330 CAACGGAGGTTTTGCAAACAT 58.180 42.857 12.39 5.00 32.98 2.71
2733 2809 0.675633 ATGCTTGGTCCTGTTGCAAC 59.324 50.000 22.83 22.83 37.20 4.17
2736 2812 0.807496 GAGATGCTTGGTCCTGTTGC 59.193 55.000 0.00 0.00 0.00 4.17
2766 2842 1.756538 ACAAGGGTTTTGTTGCAGAGG 59.243 47.619 0.00 0.00 0.00 3.69
2773 2849 5.973899 AATTTTGCAACAAGGGTTTTGTT 57.026 30.435 0.00 0.00 42.75 2.83
2774 2850 5.707931 CAAATTTTGCAACAAGGGTTTTGT 58.292 33.333 0.00 0.00 34.21 2.83
2810 2886 1.301716 GAACACAGCGAAGAGGCCA 60.302 57.895 5.01 0.00 0.00 5.36
2820 2896 0.250727 TGGGCAACTAGGAACACAGC 60.251 55.000 0.00 0.00 0.00 4.40
2821 2897 2.154462 CTTGGGCAACTAGGAACACAG 58.846 52.381 0.00 0.00 0.00 3.66
2851 2927 7.458409 AAGTTTCTGCAACATGATATCTGTT 57.542 32.000 0.00 9.07 37.93 3.16
2852 2928 6.183360 CGAAGTTTCTGCAACATGATATCTGT 60.183 38.462 0.00 3.39 37.93 3.41
2853 2929 6.190264 CGAAGTTTCTGCAACATGATATCTG 58.810 40.000 0.00 2.77 37.93 2.90
2854 2930 5.220739 GCGAAGTTTCTGCAACATGATATCT 60.221 40.000 0.00 0.00 37.93 1.98
2855 2931 4.966366 GCGAAGTTTCTGCAACATGATATC 59.034 41.667 0.00 0.00 37.93 1.63
2856 2932 4.201950 GGCGAAGTTTCTGCAACATGATAT 60.202 41.667 0.00 0.00 37.93 1.63
2857 2933 3.126858 GGCGAAGTTTCTGCAACATGATA 59.873 43.478 0.00 0.00 37.93 2.15
2858 2934 2.095059 GGCGAAGTTTCTGCAACATGAT 60.095 45.455 0.00 0.00 37.93 2.45
2859 2935 1.266718 GGCGAAGTTTCTGCAACATGA 59.733 47.619 0.00 0.00 37.93 3.07
2860 2936 1.001487 TGGCGAAGTTTCTGCAACATG 60.001 47.619 0.00 0.00 37.93 3.21
2861 2937 1.001378 GTGGCGAAGTTTCTGCAACAT 60.001 47.619 9.67 0.00 37.93 2.71
2862 2938 0.380378 GTGGCGAAGTTTCTGCAACA 59.620 50.000 9.67 0.54 37.93 3.33
2863 2939 0.317854 GGTGGCGAAGTTTCTGCAAC 60.318 55.000 0.00 8.45 33.17 4.17
2864 2940 1.781025 CGGTGGCGAAGTTTCTGCAA 61.781 55.000 0.00 0.00 0.00 4.08
2865 2941 2.250939 CGGTGGCGAAGTTTCTGCA 61.251 57.895 9.59 0.00 0.00 4.41
2866 2942 2.251642 ACGGTGGCGAAGTTTCTGC 61.252 57.895 0.00 1.79 0.00 4.26
2867 2943 1.157870 ACACGGTGGCGAAGTTTCTG 61.158 55.000 13.48 0.00 0.00 3.02
2868 2944 0.878961 GACACGGTGGCGAAGTTTCT 60.879 55.000 13.48 0.00 0.00 2.52
2869 2945 1.568025 GACACGGTGGCGAAGTTTC 59.432 57.895 13.48 0.00 0.00 2.78
2870 2946 3.727146 GACACGGTGGCGAAGTTT 58.273 55.556 13.48 0.00 0.00 2.66
2888 2964 4.012895 CAACCACAGTCGGCGCAC 62.013 66.667 10.83 0.00 0.00 5.34
2889 2965 4.539083 ACAACCACAGTCGGCGCA 62.539 61.111 10.83 0.00 0.00 6.09
2890 2966 3.276846 AACAACCACAGTCGGCGC 61.277 61.111 0.00 0.00 0.00 6.53
2891 2967 2.101209 GACAACAACCACAGTCGGCG 62.101 60.000 0.00 0.00 0.00 6.46
2892 2968 1.647084 GACAACAACCACAGTCGGC 59.353 57.895 0.00 0.00 0.00 5.54
2895 2971 1.647084 GCCGACAACAACCACAGTC 59.353 57.895 0.00 0.00 0.00 3.51
2896 2972 2.177580 CGCCGACAACAACCACAGT 61.178 57.895 0.00 0.00 0.00 3.55
2897 2973 2.631428 CGCCGACAACAACCACAG 59.369 61.111 0.00 0.00 0.00 3.66
2898 2974 3.578272 GCGCCGACAACAACCACA 61.578 61.111 0.00 0.00 0.00 4.17
2899 2975 4.322385 GGCGCCGACAACAACCAC 62.322 66.667 12.58 0.00 0.00 4.16
2900 2976 4.858680 TGGCGCCGACAACAACCA 62.859 61.111 23.90 0.00 0.00 3.67
2901 2977 2.999363 CTTTGGCGCCGACAACAACC 62.999 60.000 23.90 0.00 26.20 3.77
2902 2978 1.657181 CTTTGGCGCCGACAACAAC 60.657 57.895 23.90 0.00 26.20 3.32
2903 2979 2.718731 CTTTGGCGCCGACAACAA 59.281 55.556 23.90 6.19 26.20 2.83
2904 2980 3.283684 CCTTTGGCGCCGACAACA 61.284 61.111 23.90 3.37 26.20 3.33
2905 2981 3.284449 ACCTTTGGCGCCGACAAC 61.284 61.111 23.90 0.00 26.20 3.32
2906 2982 3.283684 CACCTTTGGCGCCGACAA 61.284 61.111 23.90 0.00 0.00 3.18
2924 3000 0.460311 CCTCACCGGTGTCCTATCAC 59.540 60.000 32.74 0.00 37.57 3.06
2925 3001 0.040646 ACCTCACCGGTGTCCTATCA 59.959 55.000 32.74 12.02 46.80 2.15
2926 3002 2.897699 ACCTCACCGGTGTCCTATC 58.102 57.895 32.74 0.00 46.80 2.08
2937 3013 4.681978 AGCGCCGTCAACCTCACC 62.682 66.667 2.29 0.00 0.00 4.02
2938 3014 3.112709 GAGCGCCGTCAACCTCAC 61.113 66.667 2.29 0.00 0.00 3.51
2939 3015 3.303135 AGAGCGCCGTCAACCTCA 61.303 61.111 2.29 0.00 0.00 3.86
2940 3016 2.811317 CAGAGCGCCGTCAACCTC 60.811 66.667 2.29 0.00 0.00 3.85
2941 3017 3.616721 ACAGAGCGCCGTCAACCT 61.617 61.111 2.29 0.00 0.00 3.50
2942 3018 3.414700 CACAGAGCGCCGTCAACC 61.415 66.667 2.29 0.00 0.00 3.77
2943 3019 4.077188 GCACAGAGCGCCGTCAAC 62.077 66.667 2.29 0.00 0.00 3.18
2952 3028 2.155194 CGCGACACTAGCACAGAGC 61.155 63.158 0.00 0.00 46.19 4.09
2953 3029 1.515088 CCGCGACACTAGCACAGAG 60.515 63.158 8.23 0.00 34.19 3.35
2954 3030 1.313091 ATCCGCGACACTAGCACAGA 61.313 55.000 8.23 0.00 34.19 3.41
2955 3031 0.380733 TATCCGCGACACTAGCACAG 59.619 55.000 8.23 0.00 34.19 3.66
2956 3032 1.001706 GATATCCGCGACACTAGCACA 60.002 52.381 8.23 0.00 34.19 4.57
2957 3033 1.001706 TGATATCCGCGACACTAGCAC 60.002 52.381 8.23 0.00 34.19 4.40
2958 3034 1.001706 GTGATATCCGCGACACTAGCA 60.002 52.381 8.23 0.00 34.19 3.49
2959 3035 1.001706 TGTGATATCCGCGACACTAGC 60.002 52.381 8.23 0.00 34.81 3.42
2960 3036 2.651701 GTGTGATATCCGCGACACTAG 58.348 52.381 8.23 0.00 36.57 2.57
2961 3037 1.003223 CGTGTGATATCCGCGACACTA 60.003 52.381 19.90 2.90 37.22 2.74
2962 3038 0.248498 CGTGTGATATCCGCGACACT 60.248 55.000 19.90 0.00 37.22 3.55
2963 3039 0.248336 TCGTGTGATATCCGCGACAC 60.248 55.000 19.32 12.31 39.64 3.67
2964 3040 0.666374 ATCGTGTGATATCCGCGACA 59.334 50.000 23.11 9.86 46.17 4.35
2965 3041 1.328439 GATCGTGTGATATCCGCGAC 58.672 55.000 23.11 16.22 46.17 5.19
2967 3043 0.039527 TGGATCGTGTGATATCCGCG 60.040 55.000 16.32 16.32 43.96 6.46
2968 3044 2.263077 GATGGATCGTGTGATATCCGC 58.737 52.381 0.00 0.00 43.96 5.54
2969 3045 2.519963 CGATGGATCGTGTGATATCCG 58.480 52.381 0.00 0.00 43.96 4.18
2981 3057 2.125912 CGGCCGGATCGATGGATC 60.126 66.667 20.10 9.09 46.85 3.36
2982 3058 3.695606 CCGGCCGGATCGATGGAT 61.696 66.667 41.82 0.00 37.50 3.41
3007 3083 4.849329 ATCTCCGCCGTCGAACGC 62.849 66.667 0.00 0.00 40.91 4.84
3008 3084 2.651232 GATCTCCGCCGTCGAACG 60.651 66.667 0.00 0.00 42.11 3.95
3009 3085 2.278661 GGATCTCCGCCGTCGAAC 60.279 66.667 0.00 0.00 38.10 3.95
3010 3086 3.524606 GGGATCTCCGCCGTCGAA 61.525 66.667 0.00 0.00 38.10 3.71
3029 3105 4.776322 TCGTTGGGCGCCTCCATG 62.776 66.667 28.56 15.53 41.07 3.66
3030 3106 4.778143 GTCGTTGGGCGCCTCCAT 62.778 66.667 28.56 0.00 41.07 3.41
3036 3112 4.364409 GTTGTCGTCGTTGGGCGC 62.364 66.667 0.00 0.00 41.07 6.53
3037 3113 3.708734 GGTTGTCGTCGTTGGGCG 61.709 66.667 0.00 0.00 43.01 6.13
3038 3114 2.280592 AGGTTGTCGTCGTTGGGC 60.281 61.111 0.00 0.00 0.00 5.36
3039 3115 2.604174 GCAGGTTGTCGTCGTTGGG 61.604 63.158 0.00 0.00 0.00 4.12
3040 3116 1.831389 CTGCAGGTTGTCGTCGTTGG 61.831 60.000 5.57 0.00 0.00 3.77
3041 3117 1.564622 CTGCAGGTTGTCGTCGTTG 59.435 57.895 5.57 0.00 0.00 4.10
3042 3118 1.594293 CCTGCAGGTTGTCGTCGTT 60.594 57.895 25.53 0.00 0.00 3.85
3043 3119 2.029073 CCTGCAGGTTGTCGTCGT 59.971 61.111 25.53 0.00 0.00 4.34
3044 3120 3.414700 GCCTGCAGGTTGTCGTCG 61.415 66.667 32.81 5.52 37.57 5.12
3045 3121 3.414700 CGCCTGCAGGTTGTCGTC 61.415 66.667 32.81 13.99 37.57 4.20
3046 3122 4.988598 CCGCCTGCAGGTTGTCGT 62.989 66.667 32.81 0.00 37.57 4.34
3047 3123 4.988598 ACCGCCTGCAGGTTGTCG 62.989 66.667 32.81 25.77 39.29 4.35
3048 3124 3.357079 CACCGCCTGCAGGTTGTC 61.357 66.667 32.81 15.85 40.59 3.18
3049 3125 4.954970 CCACCGCCTGCAGGTTGT 62.955 66.667 32.81 25.68 40.59 3.32
3057 3133 1.973281 AATTGAGTGCCACCGCCTG 60.973 57.895 0.00 0.00 0.00 4.85
3058 3134 1.973281 CAATTGAGTGCCACCGCCT 60.973 57.895 0.00 0.00 0.00 5.52
3059 3135 1.926511 CTCAATTGAGTGCCACCGCC 61.927 60.000 24.65 0.00 37.40 6.13
3060 3136 1.503542 CTCAATTGAGTGCCACCGC 59.496 57.895 24.65 0.00 37.40 5.68
3061 3137 1.926511 GCCTCAATTGAGTGCCACCG 61.927 60.000 29.03 15.66 40.48 4.94
3062 3138 0.895100 TGCCTCAATTGAGTGCCACC 60.895 55.000 29.90 15.93 40.48 4.61
3063 3139 0.961019 TTGCCTCAATTGAGTGCCAC 59.039 50.000 29.90 18.03 40.48 5.01
3064 3140 1.250328 CTTGCCTCAATTGAGTGCCA 58.750 50.000 29.90 23.34 40.48 4.92
3065 3141 0.529378 CCTTGCCTCAATTGAGTGCC 59.471 55.000 29.90 20.72 40.48 5.01
3066 3142 0.529378 CCCTTGCCTCAATTGAGTGC 59.471 55.000 29.03 28.48 40.48 4.40
3067 3143 0.529378 GCCCTTGCCTCAATTGAGTG 59.471 55.000 29.03 21.87 40.48 3.51
3068 3144 0.962356 CGCCCTTGCCTCAATTGAGT 60.962 55.000 29.03 0.00 40.48 3.41
3069 3145 1.660560 CCGCCCTTGCCTCAATTGAG 61.661 60.000 25.75 25.75 41.71 3.02
3070 3146 1.678635 CCGCCCTTGCCTCAATTGA 60.679 57.895 8.12 8.12 0.00 2.57
3071 3147 2.887360 CCGCCCTTGCCTCAATTG 59.113 61.111 0.00 0.00 0.00 2.32
3072 3148 3.070576 GCCGCCCTTGCCTCAATT 61.071 61.111 0.00 0.00 0.00 2.32
3073 3149 4.365111 TGCCGCCCTTGCCTCAAT 62.365 61.111 0.00 0.00 0.00 2.57
3087 3163 4.767255 CCACCACGGAGCTCTGCC 62.767 72.222 22.80 0.40 36.56 4.85
3088 3164 4.767255 CCCACCACGGAGCTCTGC 62.767 72.222 22.80 0.67 36.56 4.26
3089 3165 4.087892 CCCCACCACGGAGCTCTG 62.088 72.222 21.32 21.32 36.56 3.35
3094 3170 4.704833 CACTGCCCCACCACGGAG 62.705 72.222 0.00 0.00 36.56 4.63
3098 3174 3.297620 CTTGCACTGCCCCACCAC 61.298 66.667 0.00 0.00 0.00 4.16
3099 3175 4.601794 CCTTGCACTGCCCCACCA 62.602 66.667 0.00 0.00 0.00 4.17
3101 3177 4.603535 ACCCTTGCACTGCCCCAC 62.604 66.667 0.00 0.00 0.00 4.61
3102 3178 4.601794 CACCCTTGCACTGCCCCA 62.602 66.667 0.00 0.00 0.00 4.96
3105 3181 4.982701 AGCCACCCTTGCACTGCC 62.983 66.667 0.00 0.00 0.00 4.85
3106 3182 3.368571 GAGCCACCCTTGCACTGC 61.369 66.667 0.00 0.00 0.00 4.40
3107 3183 2.674380 GGAGCCACCCTTGCACTG 60.674 66.667 0.00 0.00 0.00 3.66
3108 3184 4.335647 CGGAGCCACCCTTGCACT 62.336 66.667 0.00 0.00 34.64 4.40
3127 3203 3.456431 CTCCTACTGCTCGGCGTCG 62.456 68.421 1.15 1.15 37.82 5.12
3128 3204 2.054140 CTCTCCTACTGCTCGGCGTC 62.054 65.000 6.85 0.30 0.00 5.19
3129 3205 2.045242 TCTCCTACTGCTCGGCGT 60.045 61.111 6.85 0.00 0.00 5.68
3130 3206 2.718731 CTCTCCTACTGCTCGGCG 59.281 66.667 0.00 0.00 0.00 6.46
3131 3207 1.452145 CTCCTCTCCTACTGCTCGGC 61.452 65.000 0.00 0.00 0.00 5.54
3132 3208 0.821711 CCTCCTCTCCTACTGCTCGG 60.822 65.000 0.00 0.00 0.00 4.63
3133 3209 1.452145 GCCTCCTCTCCTACTGCTCG 61.452 65.000 0.00 0.00 0.00 5.03
3134 3210 1.452145 CGCCTCCTCTCCTACTGCTC 61.452 65.000 0.00 0.00 0.00 4.26
3135 3211 1.454847 CGCCTCCTCTCCTACTGCT 60.455 63.158 0.00 0.00 0.00 4.24
3136 3212 1.755008 ACGCCTCCTCTCCTACTGC 60.755 63.158 0.00 0.00 0.00 4.40
3137 3213 2.010582 GCACGCCTCCTCTCCTACTG 62.011 65.000 0.00 0.00 0.00 2.74
3138 3214 1.755008 GCACGCCTCCTCTCCTACT 60.755 63.158 0.00 0.00 0.00 2.57
3139 3215 1.605058 TTGCACGCCTCCTCTCCTAC 61.605 60.000 0.00 0.00 0.00 3.18
3140 3216 0.687757 ATTGCACGCCTCCTCTCCTA 60.688 55.000 0.00 0.00 0.00 2.94
3141 3217 1.992277 ATTGCACGCCTCCTCTCCT 60.992 57.895 0.00 0.00 0.00 3.69
3142 3218 1.817099 CATTGCACGCCTCCTCTCC 60.817 63.158 0.00 0.00 0.00 3.71
3143 3219 1.817099 CCATTGCACGCCTCCTCTC 60.817 63.158 0.00 0.00 0.00 3.20
3144 3220 2.270205 CCATTGCACGCCTCCTCT 59.730 61.111 0.00 0.00 0.00 3.69
3145 3221 2.825836 CCCATTGCACGCCTCCTC 60.826 66.667 0.00 0.00 0.00 3.71
3146 3222 4.431131 CCCCATTGCACGCCTCCT 62.431 66.667 0.00 0.00 0.00 3.69
3170 3246 2.758737 GATGACCCCCGACGAGGT 60.759 66.667 9.01 9.01 39.75 3.85
3171 3247 3.900892 CGATGACCCCCGACGAGG 61.901 72.222 0.00 0.00 40.63 4.63
3172 3248 3.900892 CCGATGACCCCCGACGAG 61.901 72.222 0.00 0.00 0.00 4.18
3173 3249 4.429522 TCCGATGACCCCCGACGA 62.430 66.667 0.00 0.00 0.00 4.20
3174 3250 3.900892 CTCCGATGACCCCCGACG 61.901 72.222 0.00 0.00 0.00 5.12
3175 3251 2.441532 TCTCCGATGACCCCCGAC 60.442 66.667 0.00 0.00 0.00 4.79
3176 3252 2.441532 GTCTCCGATGACCCCCGA 60.442 66.667 0.00 0.00 0.00 5.14
3188 3264 4.112341 CCACGACGACCGGTCTCC 62.112 72.222 30.92 20.54 43.79 3.71
3189 3265 2.620112 TTCCACGACGACCGGTCTC 61.620 63.158 30.92 23.90 43.79 3.36
3190 3266 2.595463 TTCCACGACGACCGGTCT 60.595 61.111 30.92 18.49 43.79 3.85
3191 3267 2.429739 GTTCCACGACGACCGGTC 60.430 66.667 25.28 25.28 43.93 4.79
3192 3268 4.332637 CGTTCCACGACGACCGGT 62.333 66.667 6.92 6.92 46.05 5.28
3195 3271 3.958822 ATCGCGTTCCACGACGACC 62.959 63.158 5.77 0.00 46.23 4.79
3196 3272 2.503375 ATCGCGTTCCACGACGAC 60.503 61.111 5.77 0.00 46.23 4.34
3197 3273 2.503158 CATCGCGTTCCACGACGA 60.503 61.111 5.77 14.71 46.05 4.20
3198 3274 3.541831 CCATCGCGTTCCACGACG 61.542 66.667 5.77 3.85 46.05 5.12
3199 3275 2.431942 ACCATCGCGTTCCACGAC 60.432 61.111 5.77 0.00 46.05 4.34
3200 3276 2.431771 CACCATCGCGTTCCACGA 60.432 61.111 5.77 0.00 46.05 4.35
3201 3277 4.147322 GCACCATCGCGTTCCACG 62.147 66.667 5.77 0.00 45.88 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.