Multiple sequence alignment - TraesCS7D01G307100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G307100 chr7D 100.000 4667 0 0 1 4667 388988959 388993625 0.000000e+00 8619.0
1 TraesCS7D01G307100 chr7D 88.000 425 48 2 1 422 31573657 31573233 2.510000e-137 499.0
2 TraesCS7D01G307100 chr7D 82.282 412 63 6 1 409 239681152 239681556 9.610000e-92 348.0
3 TraesCS7D01G307100 chr7A 95.801 3906 106 13 768 4656 439625976 439629840 0.000000e+00 6252.0
4 TraesCS7D01G307100 chr7A 91.860 258 15 3 436 691 439625305 439625558 5.740000e-94 355.0
5 TraesCS7D01G307100 chr7B 95.186 3781 116 23 436 4190 384186855 384190595 0.000000e+00 5914.0
6 TraesCS7D01G307100 chr7B 95.349 430 12 3 4227 4656 384190593 384191014 0.000000e+00 676.0
7 TraesCS7D01G307100 chr7B 92.500 40 2 1 541 579 384186914 384186953 6.520000e-04 56.5
8 TraesCS7D01G307100 chr2D 87.560 418 50 1 1 416 154830944 154831361 2.530000e-132 483.0
9 TraesCS7D01G307100 chr4D 87.028 424 51 2 1 422 439884656 439885077 4.230000e-130 475.0
10 TraesCS7D01G307100 chr4D 85.024 414 58 4 1 413 394404231 394403821 7.220000e-113 418.0
11 TraesCS7D01G307100 chr2B 87.028 424 51 2 1 422 137266023 137266444 4.230000e-130 475.0
12 TraesCS7D01G307100 chr2B 87.850 107 13 0 4279 4385 35130789 35130683 4.900000e-25 126.0
13 TraesCS7D01G307100 chr3D 85.618 445 51 9 1 439 532165382 532164945 5.500000e-124 455.0
14 TraesCS7D01G307100 chr1B 84.561 421 59 6 4 420 360368763 360368345 3.360000e-111 412.0
15 TraesCS7D01G307100 chr1D 83.413 416 66 2 1 414 233032325 233031911 2.630000e-102 383.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G307100 chr7D 388988959 388993625 4666 False 8619.0 8619 100.0000 1 4667 1 chr7D.!!$F2 4666
1 TraesCS7D01G307100 chr7A 439625305 439629840 4535 False 3303.5 6252 93.8305 436 4656 2 chr7A.!!$F1 4220
2 TraesCS7D01G307100 chr7B 384186855 384191014 4159 False 2215.5 5914 94.3450 436 4656 3 chr7B.!!$F1 4220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.037232 GTCGGACCCCTCTTGACTTG 60.037 60.000 0.0 0.0 0.00 3.16 F
329 330 0.108019 ACTGGGACGGAGAACCAAAC 59.892 55.000 0.0 0.0 38.67 2.93 F
359 360 0.320421 CAGAAACACCCACGTCCGAT 60.320 55.000 0.0 0.0 0.00 4.18 F
394 395 0.820226 TGAACATCCGAGAGAGCAGG 59.180 55.000 0.0 0.0 0.00 4.85 F
395 396 0.820871 GAACATCCGAGAGAGCAGGT 59.179 55.000 0.0 0.0 0.00 4.00 F
416 417 0.912486 AAATGAGACGAAGGGGAGGG 59.088 55.000 0.0 0.0 0.00 4.30 F
417 418 0.983378 AATGAGACGAAGGGGAGGGG 60.983 60.000 0.0 0.0 0.00 4.79 F
618 641 1.102222 GTCCCTCCTAGACGTGCGAT 61.102 60.000 0.0 0.0 0.00 4.58 F
2114 2481 1.350684 GTGGCAATGAAATGGGGGTTT 59.649 47.619 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2468 0.266152 ACACCCAAACCCCCATTTCA 59.734 50.000 0.00 0.0 0.00 2.69 R
2185 2552 2.175878 AGAACATCAGCAAGCTCGTT 57.824 45.000 0.00 0.0 0.00 3.85 R
2327 2694 7.865706 TCCTCTTTTATCTTTATTCCAGCAC 57.134 36.000 0.00 0.0 0.00 4.40 R
2403 2770 4.884668 AGGTTGCTACTAAGTGCTAACA 57.115 40.909 0.00 0.0 0.00 2.41 R
2404 2771 7.845066 AATAAGGTTGCTACTAAGTGCTAAC 57.155 36.000 0.00 0.0 0.00 2.34 R
2416 2783 6.150307 TCGCATTTCAGAAAATAAGGTTGCTA 59.850 34.615 11.67 1.3 33.27 3.49 R
2451 2818 3.585990 GATCATGTTGGGCCGCCG 61.586 66.667 2.55 0.0 0.00 6.46 R
2477 2854 1.134098 CCCCAATAACTCGCAGATGGT 60.134 52.381 0.00 0.0 33.89 3.55 R
3789 4169 0.178068 ATGATCGCCTACCGCAAAGT 59.822 50.000 0.00 0.0 37.30 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.753272 ACCAAAACATGAATCTGGTCTCG 59.247 43.478 0.00 0.00 35.44 4.04
23 24 4.002982 CCAAAACATGAATCTGGTCTCGA 58.997 43.478 0.00 0.00 0.00 4.04
24 25 4.142816 CCAAAACATGAATCTGGTCTCGAC 60.143 45.833 0.00 0.00 0.00 4.20
25 26 2.568696 ACATGAATCTGGTCTCGACG 57.431 50.000 0.00 0.00 0.00 5.12
26 27 1.203928 CATGAATCTGGTCTCGACGC 58.796 55.000 0.00 0.00 0.00 5.19
27 28 0.103208 ATGAATCTGGTCTCGACGCC 59.897 55.000 0.00 0.00 0.00 5.68
28 29 1.227002 GAATCTGGTCTCGACGCCC 60.227 63.158 0.00 0.00 0.00 6.13
29 30 2.630592 GAATCTGGTCTCGACGCCCC 62.631 65.000 0.00 0.00 0.00 5.80
32 33 4.051167 TGGTCTCGACGCCCCCTA 62.051 66.667 0.00 0.00 0.00 3.53
33 34 3.217743 GGTCTCGACGCCCCCTAG 61.218 72.222 0.00 0.00 0.00 3.02
34 35 3.902086 GTCTCGACGCCCCCTAGC 61.902 72.222 0.00 0.00 0.00 3.42
43 44 4.851179 CCCCCTAGCGGCGAAACC 62.851 72.222 12.98 0.00 0.00 3.27
44 45 3.782443 CCCCTAGCGGCGAAACCT 61.782 66.667 12.98 0.00 35.61 3.50
45 46 2.202892 CCCTAGCGGCGAAACCTC 60.203 66.667 12.98 0.00 35.61 3.85
46 47 2.722201 CCCTAGCGGCGAAACCTCT 61.722 63.158 12.98 0.00 37.27 3.69
47 48 1.389609 CCCTAGCGGCGAAACCTCTA 61.390 60.000 12.98 0.00 34.49 2.43
48 49 0.458669 CCTAGCGGCGAAACCTCTAA 59.541 55.000 12.98 0.00 35.30 2.10
49 50 1.557651 CTAGCGGCGAAACCTCTAAC 58.442 55.000 12.98 0.00 35.30 2.34
50 51 0.179156 TAGCGGCGAAACCTCTAACG 60.179 55.000 12.98 0.00 32.65 3.18
51 52 1.735559 GCGGCGAAACCTCTAACGT 60.736 57.895 12.98 0.00 35.61 3.99
52 53 1.287041 GCGGCGAAACCTCTAACGTT 61.287 55.000 12.98 5.88 35.61 3.99
53 54 0.712222 CGGCGAAACCTCTAACGTTC 59.288 55.000 2.82 0.00 35.61 3.95
54 55 1.073964 GGCGAAACCTCTAACGTTCC 58.926 55.000 2.82 0.00 34.51 3.62
55 56 1.606224 GGCGAAACCTCTAACGTTCCA 60.606 52.381 2.82 0.00 34.51 3.53
56 57 1.725164 GCGAAACCTCTAACGTTCCAG 59.275 52.381 2.82 1.25 0.00 3.86
57 58 2.608752 GCGAAACCTCTAACGTTCCAGA 60.609 50.000 2.82 1.73 0.00 3.86
58 59 3.645884 CGAAACCTCTAACGTTCCAGAA 58.354 45.455 2.82 0.00 0.00 3.02
59 60 4.243270 CGAAACCTCTAACGTTCCAGAAT 58.757 43.478 2.82 0.00 0.00 2.40
60 61 5.404946 CGAAACCTCTAACGTTCCAGAATA 58.595 41.667 2.82 0.00 0.00 1.75
61 62 5.515626 CGAAACCTCTAACGTTCCAGAATAG 59.484 44.000 2.82 0.00 0.00 1.73
62 63 5.340439 AACCTCTAACGTTCCAGAATAGG 57.660 43.478 2.82 3.76 0.00 2.57
63 64 3.705072 ACCTCTAACGTTCCAGAATAGGG 59.295 47.826 2.82 3.39 0.00 3.53
64 65 3.492829 CCTCTAACGTTCCAGAATAGGGC 60.493 52.174 2.82 0.00 0.00 5.19
65 66 3.371965 TCTAACGTTCCAGAATAGGGCT 58.628 45.455 2.82 0.00 0.00 5.19
66 67 3.773119 TCTAACGTTCCAGAATAGGGCTT 59.227 43.478 2.82 0.00 0.00 4.35
67 68 3.434940 AACGTTCCAGAATAGGGCTTT 57.565 42.857 0.00 0.00 0.00 3.51
68 69 2.987232 ACGTTCCAGAATAGGGCTTTC 58.013 47.619 0.00 0.00 0.00 2.62
69 70 2.304761 ACGTTCCAGAATAGGGCTTTCA 59.695 45.455 0.00 0.00 0.00 2.69
70 71 3.054361 ACGTTCCAGAATAGGGCTTTCAT 60.054 43.478 0.00 0.00 0.00 2.57
71 72 3.947834 CGTTCCAGAATAGGGCTTTCATT 59.052 43.478 0.00 0.00 0.00 2.57
72 73 4.399303 CGTTCCAGAATAGGGCTTTCATTT 59.601 41.667 0.00 0.00 0.00 2.32
73 74 5.588648 CGTTCCAGAATAGGGCTTTCATTTA 59.411 40.000 0.00 0.00 0.00 1.40
74 75 6.263168 CGTTCCAGAATAGGGCTTTCATTTAT 59.737 38.462 0.00 0.00 0.00 1.40
75 76 7.444183 CGTTCCAGAATAGGGCTTTCATTTATA 59.556 37.037 0.00 0.00 0.00 0.98
76 77 8.787852 GTTCCAGAATAGGGCTTTCATTTATAG 58.212 37.037 0.00 0.00 0.00 1.31
77 78 7.461749 TCCAGAATAGGGCTTTCATTTATAGG 58.538 38.462 0.00 0.00 0.00 2.57
78 79 7.294720 TCCAGAATAGGGCTTTCATTTATAGGA 59.705 37.037 0.00 0.00 0.00 2.94
79 80 7.391833 CCAGAATAGGGCTTTCATTTATAGGAC 59.608 40.741 0.00 0.00 0.00 3.85
80 81 7.939039 CAGAATAGGGCTTTCATTTATAGGACA 59.061 37.037 0.00 0.00 0.00 4.02
81 82 8.502738 AGAATAGGGCTTTCATTTATAGGACAA 58.497 33.333 0.00 0.00 0.00 3.18
82 83 9.131791 GAATAGGGCTTTCATTTATAGGACAAA 57.868 33.333 0.00 0.00 0.00 2.83
83 84 9.660544 AATAGGGCTTTCATTTATAGGACAAAT 57.339 29.630 0.00 0.00 0.00 2.32
84 85 7.978099 AGGGCTTTCATTTATAGGACAAATT 57.022 32.000 0.00 0.00 0.00 1.82
85 86 8.379428 AGGGCTTTCATTTATAGGACAAATTT 57.621 30.769 0.00 0.00 0.00 1.82
86 87 8.825774 AGGGCTTTCATTTATAGGACAAATTTT 58.174 29.630 0.00 0.00 0.00 1.82
87 88 9.448438 GGGCTTTCATTTATAGGACAAATTTTT 57.552 29.630 0.00 0.00 0.00 1.94
96 97 9.796120 TTTATAGGACAAATTTTTAATGCGGAG 57.204 29.630 0.00 0.00 0.00 4.63
97 98 5.975693 AGGACAAATTTTTAATGCGGAGA 57.024 34.783 0.00 0.00 0.00 3.71
98 99 5.709966 AGGACAAATTTTTAATGCGGAGAC 58.290 37.500 0.00 0.00 0.00 3.36
99 100 5.476945 AGGACAAATTTTTAATGCGGAGACT 59.523 36.000 0.00 0.00 0.00 3.24
100 101 6.657541 AGGACAAATTTTTAATGCGGAGACTA 59.342 34.615 0.00 0.00 0.00 2.59
101 102 6.967199 GGACAAATTTTTAATGCGGAGACTAG 59.033 38.462 0.00 0.00 0.00 2.57
102 103 7.148306 GGACAAATTTTTAATGCGGAGACTAGA 60.148 37.037 0.00 0.00 0.00 2.43
103 104 7.527457 ACAAATTTTTAATGCGGAGACTAGAC 58.473 34.615 0.00 0.00 0.00 2.59
104 105 6.679327 AATTTTTAATGCGGAGACTAGACC 57.321 37.500 0.00 0.00 0.00 3.85
105 106 5.416271 TTTTTAATGCGGAGACTAGACCT 57.584 39.130 0.00 0.00 0.00 3.85
106 107 4.386867 TTTAATGCGGAGACTAGACCTG 57.613 45.455 0.00 0.00 0.00 4.00
107 108 0.461961 AATGCGGAGACTAGACCTGC 59.538 55.000 0.00 2.24 0.00 4.85
108 109 0.684479 ATGCGGAGACTAGACCTGCA 60.684 55.000 15.32 15.32 38.86 4.41
109 110 0.898326 TGCGGAGACTAGACCTGCAA 60.898 55.000 12.23 1.27 34.73 4.08
110 111 0.179124 GCGGAGACTAGACCTGCAAG 60.179 60.000 0.00 0.00 0.00 4.01
111 112 0.179124 CGGAGACTAGACCTGCAAGC 60.179 60.000 0.00 0.00 0.00 4.01
112 113 0.179124 GGAGACTAGACCTGCAAGCG 60.179 60.000 0.00 0.00 0.00 4.68
113 114 0.179124 GAGACTAGACCTGCAAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
114 115 1.811679 GACTAGACCTGCAAGCGGC 60.812 63.158 0.00 0.00 45.13 6.53
115 116 2.232298 GACTAGACCTGCAAGCGGCT 62.232 60.000 0.00 0.00 45.15 5.52
116 117 0.970937 ACTAGACCTGCAAGCGGCTA 60.971 55.000 1.35 0.00 45.15 3.93
117 118 0.175760 CTAGACCTGCAAGCGGCTAA 59.824 55.000 1.35 0.00 45.15 3.09
118 119 0.611200 TAGACCTGCAAGCGGCTAAA 59.389 50.000 1.35 0.00 45.15 1.85
119 120 0.955919 AGACCTGCAAGCGGCTAAAC 60.956 55.000 1.35 0.00 45.15 2.01
120 121 1.228124 ACCTGCAAGCGGCTAAACA 60.228 52.632 1.35 0.82 45.15 2.83
121 122 1.237285 ACCTGCAAGCGGCTAAACAG 61.237 55.000 1.35 11.09 45.15 3.16
122 123 1.503542 CTGCAAGCGGCTAAACAGG 59.496 57.895 1.35 0.00 45.15 4.00
123 124 0.955428 CTGCAAGCGGCTAAACAGGA 60.955 55.000 1.35 0.00 45.15 3.86
124 125 0.322456 TGCAAGCGGCTAAACAGGAT 60.322 50.000 1.35 0.00 45.15 3.24
125 126 0.811281 GCAAGCGGCTAAACAGGATT 59.189 50.000 1.35 0.00 40.25 3.01
126 127 1.202348 GCAAGCGGCTAAACAGGATTT 59.798 47.619 1.35 0.00 40.25 2.17
127 128 2.422127 GCAAGCGGCTAAACAGGATTTA 59.578 45.455 1.35 0.00 40.25 1.40
128 129 3.487544 GCAAGCGGCTAAACAGGATTTAG 60.488 47.826 1.35 2.67 40.25 1.85
129 130 3.906720 AGCGGCTAAACAGGATTTAGA 57.093 42.857 0.00 0.00 34.74 2.10
130 131 4.216411 AGCGGCTAAACAGGATTTAGAA 57.784 40.909 0.00 0.00 34.74 2.10
131 132 3.939592 AGCGGCTAAACAGGATTTAGAAC 59.060 43.478 0.00 2.36 34.74 3.01
132 133 3.242316 GCGGCTAAACAGGATTTAGAACG 60.242 47.826 9.97 12.52 37.17 3.95
133 134 3.930848 CGGCTAAACAGGATTTAGAACGT 59.069 43.478 9.97 0.00 34.74 3.99
134 135 4.390909 CGGCTAAACAGGATTTAGAACGTT 59.609 41.667 0.00 0.00 34.74 3.99
135 136 5.106830 CGGCTAAACAGGATTTAGAACGTTT 60.107 40.000 0.46 0.00 34.74 3.60
136 137 6.084277 GGCTAAACAGGATTTAGAACGTTTG 58.916 40.000 0.46 0.00 34.74 2.93
137 138 6.084277 GCTAAACAGGATTTAGAACGTTTGG 58.916 40.000 0.46 0.00 34.74 3.28
138 139 6.293790 GCTAAACAGGATTTAGAACGTTTGGT 60.294 38.462 0.46 0.00 34.74 3.67
139 140 5.684550 AACAGGATTTAGAACGTTTGGTC 57.315 39.130 0.46 0.00 0.00 4.02
140 141 3.744426 ACAGGATTTAGAACGTTTGGTCG 59.256 43.478 0.46 0.00 0.00 4.79
141 142 3.124636 CAGGATTTAGAACGTTTGGTCGG 59.875 47.826 0.46 0.00 34.94 4.79
142 143 3.007182 AGGATTTAGAACGTTTGGTCGGA 59.993 43.478 0.46 0.00 34.94 4.55
143 144 3.124128 GGATTTAGAACGTTTGGTCGGAC 59.876 47.826 0.46 0.00 34.94 4.79
144 145 2.153366 TTAGAACGTTTGGTCGGACC 57.847 50.000 20.36 20.36 39.22 4.46
145 146 0.318120 TAGAACGTTTGGTCGGACCC 59.682 55.000 23.81 8.19 37.50 4.46
146 147 1.962822 GAACGTTTGGTCGGACCCC 60.963 63.158 23.81 11.00 37.50 4.95
147 148 2.387476 GAACGTTTGGTCGGACCCCT 62.387 60.000 23.81 2.41 37.50 4.79
148 149 2.047560 CGTTTGGTCGGACCCCTC 60.048 66.667 23.81 12.45 37.50 4.30
149 150 2.580601 CGTTTGGTCGGACCCCTCT 61.581 63.158 23.81 0.00 37.50 3.69
150 151 1.759236 GTTTGGTCGGACCCCTCTT 59.241 57.895 23.81 0.00 37.50 2.85
151 152 0.605589 GTTTGGTCGGACCCCTCTTG 60.606 60.000 23.81 0.00 37.50 3.02
152 153 0.765135 TTTGGTCGGACCCCTCTTGA 60.765 55.000 23.81 0.61 37.50 3.02
153 154 1.477685 TTGGTCGGACCCCTCTTGAC 61.478 60.000 23.81 0.00 37.50 3.18
154 155 1.609794 GGTCGGACCCCTCTTGACT 60.610 63.158 16.55 0.00 30.04 3.41
155 156 1.192803 GGTCGGACCCCTCTTGACTT 61.193 60.000 16.55 0.00 30.04 3.01
156 157 0.037232 GTCGGACCCCTCTTGACTTG 60.037 60.000 0.00 0.00 0.00 3.16
157 158 1.192146 TCGGACCCCTCTTGACTTGG 61.192 60.000 0.00 0.00 0.00 3.61
158 159 1.685820 GGACCCCTCTTGACTTGGG 59.314 63.158 0.00 0.00 44.03 4.12
159 160 4.772118 ACCCCTCTTGACTTGGGT 57.228 55.556 0.00 0.00 46.50 4.51
162 163 0.912486 CCCCTCTTGACTTGGGTAGG 59.088 60.000 0.00 0.00 39.31 3.18
163 164 0.912486 CCCTCTTGACTTGGGTAGGG 59.088 60.000 0.00 0.00 37.90 3.53
164 165 0.912486 CCTCTTGACTTGGGTAGGGG 59.088 60.000 0.00 0.00 0.00 4.79
165 166 0.912486 CTCTTGACTTGGGTAGGGGG 59.088 60.000 0.00 0.00 0.00 5.40
190 191 3.041940 CGACAGGCCACAACCGTC 61.042 66.667 5.01 0.26 33.04 4.79
191 192 2.668550 GACAGGCCACAACCGTCC 60.669 66.667 5.01 0.00 31.36 4.79
192 193 4.619227 ACAGGCCACAACCGTCCG 62.619 66.667 5.01 0.00 33.69 4.79
205 206 4.603946 GTCCGCCGCCCCAGTATC 62.604 72.222 0.00 0.00 0.00 2.24
210 211 2.203182 CCGCCCCAGTATCCCCTA 59.797 66.667 0.00 0.00 0.00 3.53
211 212 2.214920 CCGCCCCAGTATCCCCTAC 61.215 68.421 0.00 0.00 0.00 3.18
212 213 2.214920 CGCCCCAGTATCCCCTACC 61.215 68.421 0.00 0.00 0.00 3.18
213 214 2.214920 GCCCCAGTATCCCCTACCG 61.215 68.421 0.00 0.00 0.00 4.02
214 215 1.535687 CCCCAGTATCCCCTACCGG 60.536 68.421 0.00 0.00 0.00 5.28
215 216 2.214920 CCCAGTATCCCCTACCGGC 61.215 68.421 0.00 0.00 0.00 6.13
216 217 2.214920 CCAGTATCCCCTACCGGCC 61.215 68.421 0.00 0.00 0.00 6.13
217 218 2.203466 AGTATCCCCTACCGGCCC 59.797 66.667 0.00 0.00 0.00 5.80
218 219 2.926779 GTATCCCCTACCGGCCCC 60.927 72.222 0.00 0.00 0.00 5.80
219 220 3.121856 TATCCCCTACCGGCCCCT 61.122 66.667 0.00 0.00 0.00 4.79
220 221 3.477956 TATCCCCTACCGGCCCCTG 62.478 68.421 0.00 0.00 0.00 4.45
232 233 3.305516 CCCCTGGGCAGCAACAAC 61.306 66.667 7.39 0.00 0.00 3.32
233 234 3.673484 CCCTGGGCAGCAACAACG 61.673 66.667 0.00 0.00 0.00 4.10
234 235 4.347453 CCTGGGCAGCAACAACGC 62.347 66.667 0.00 0.00 0.00 4.84
235 236 4.347453 CTGGGCAGCAACAACGCC 62.347 66.667 0.00 0.00 45.47 5.68
239 240 4.268939 GCAGCAACAACGCCAGCA 62.269 61.111 0.00 0.00 34.57 4.41
240 241 2.050714 CAGCAACAACGCCAGCAG 60.051 61.111 0.00 0.00 0.00 4.24
241 242 2.203195 AGCAACAACGCCAGCAGA 60.203 55.556 0.00 0.00 0.00 4.26
242 243 2.253452 GCAACAACGCCAGCAGAG 59.747 61.111 0.00 0.00 0.00 3.35
243 244 2.949106 CAACAACGCCAGCAGAGG 59.051 61.111 0.00 0.00 0.00 3.69
267 268 2.118076 CCTCCTTGGCCTTGGCAA 59.882 61.111 14.04 7.29 45.54 4.52
268 269 1.305549 CCTCCTTGGCCTTGGCAAT 60.306 57.895 14.04 0.00 46.44 3.56
269 270 1.325476 CCTCCTTGGCCTTGGCAATC 61.325 60.000 14.04 0.00 46.44 2.67
270 271 1.660560 CTCCTTGGCCTTGGCAATCG 61.661 60.000 14.04 0.00 46.44 3.34
271 272 2.182537 CTTGGCCTTGGCAATCGC 59.817 61.111 14.04 5.59 46.44 4.58
297 298 2.729028 GGCAACCTCATTAGCCCTAA 57.271 50.000 0.00 0.00 41.25 2.69
298 299 3.229697 GGCAACCTCATTAGCCCTAAT 57.770 47.619 0.00 0.00 41.25 1.73
310 311 6.814954 ATTAGCCCTAATGACAGAGAGAAA 57.185 37.500 0.00 0.00 34.71 2.52
311 312 4.479786 AGCCCTAATGACAGAGAGAAAC 57.520 45.455 0.00 0.00 0.00 2.78
312 313 4.100373 AGCCCTAATGACAGAGAGAAACT 58.900 43.478 0.00 0.00 0.00 2.66
313 314 4.081198 AGCCCTAATGACAGAGAGAAACTG 60.081 45.833 0.00 0.00 40.68 3.16
314 315 4.764172 CCCTAATGACAGAGAGAAACTGG 58.236 47.826 0.00 0.00 39.38 4.00
315 316 4.383552 CCCTAATGACAGAGAGAAACTGGG 60.384 50.000 0.00 0.00 39.38 4.45
316 317 4.467795 CCTAATGACAGAGAGAAACTGGGA 59.532 45.833 0.00 0.00 39.38 4.37
317 318 3.971245 ATGACAGAGAGAAACTGGGAC 57.029 47.619 0.00 0.00 39.38 4.46
318 319 1.613925 TGACAGAGAGAAACTGGGACG 59.386 52.381 0.00 0.00 39.38 4.79
319 320 0.969894 ACAGAGAGAAACTGGGACGG 59.030 55.000 0.00 0.00 39.38 4.79
320 321 1.257743 CAGAGAGAAACTGGGACGGA 58.742 55.000 0.00 0.00 38.67 4.69
321 322 1.203523 CAGAGAGAAACTGGGACGGAG 59.796 57.143 0.00 0.00 38.67 4.63
322 323 1.075698 AGAGAGAAACTGGGACGGAGA 59.924 52.381 0.00 0.00 38.67 3.71
323 324 1.893801 GAGAGAAACTGGGACGGAGAA 59.106 52.381 0.00 0.00 38.67 2.87
324 325 1.619332 AGAGAAACTGGGACGGAGAAC 59.381 52.381 0.00 0.00 38.67 3.01
325 326 0.685660 AGAAACTGGGACGGAGAACC 59.314 55.000 0.00 0.00 38.67 3.62
326 327 0.395312 GAAACTGGGACGGAGAACCA 59.605 55.000 0.00 0.00 38.67 3.67
327 328 0.841289 AAACTGGGACGGAGAACCAA 59.159 50.000 0.00 0.00 38.67 3.67
328 329 0.841289 AACTGGGACGGAGAACCAAA 59.159 50.000 0.00 0.00 38.67 3.28
329 330 0.108019 ACTGGGACGGAGAACCAAAC 59.892 55.000 0.00 0.00 38.67 2.93
330 331 0.605589 CTGGGACGGAGAACCAAACC 60.606 60.000 0.00 0.00 36.57 3.27
331 332 1.303074 GGGACGGAGAACCAAACCC 60.303 63.158 0.00 0.00 36.14 4.11
332 333 1.452801 GGACGGAGAACCAAACCCA 59.547 57.895 0.00 0.00 35.59 4.51
333 334 0.605589 GGACGGAGAACCAAACCCAG 60.606 60.000 0.00 0.00 35.59 4.45
334 335 0.605589 GACGGAGAACCAAACCCAGG 60.606 60.000 0.00 0.00 35.59 4.45
335 336 1.057851 ACGGAGAACCAAACCCAGGA 61.058 55.000 0.00 0.00 35.59 3.86
336 337 0.328258 CGGAGAACCAAACCCAGGAT 59.672 55.000 0.00 0.00 35.59 3.24
337 338 1.679032 CGGAGAACCAAACCCAGGATC 60.679 57.143 0.00 0.00 35.59 3.36
338 339 1.354368 GGAGAACCAAACCCAGGATCA 59.646 52.381 0.00 0.00 35.97 2.92
339 340 2.225017 GGAGAACCAAACCCAGGATCAA 60.225 50.000 0.00 0.00 35.97 2.57
340 341 2.820197 GAGAACCAAACCCAGGATCAAC 59.180 50.000 0.00 0.00 30.97 3.18
341 342 2.176798 AGAACCAAACCCAGGATCAACA 59.823 45.455 0.00 0.00 30.97 3.33
342 343 2.292828 ACCAAACCCAGGATCAACAG 57.707 50.000 0.00 0.00 0.00 3.16
343 344 1.780309 ACCAAACCCAGGATCAACAGA 59.220 47.619 0.00 0.00 0.00 3.41
344 345 2.176798 ACCAAACCCAGGATCAACAGAA 59.823 45.455 0.00 0.00 0.00 3.02
345 346 3.230134 CCAAACCCAGGATCAACAGAAA 58.770 45.455 0.00 0.00 0.00 2.52
346 347 3.005791 CCAAACCCAGGATCAACAGAAAC 59.994 47.826 0.00 0.00 0.00 2.78
347 348 3.593442 AACCCAGGATCAACAGAAACA 57.407 42.857 0.00 0.00 0.00 2.83
348 349 2.863809 ACCCAGGATCAACAGAAACAC 58.136 47.619 0.00 0.00 0.00 3.32
349 350 2.162681 CCCAGGATCAACAGAAACACC 58.837 52.381 0.00 0.00 0.00 4.16
350 351 2.162681 CCAGGATCAACAGAAACACCC 58.837 52.381 0.00 0.00 0.00 4.61
351 352 2.488891 CCAGGATCAACAGAAACACCCA 60.489 50.000 0.00 0.00 0.00 4.51
352 353 2.554032 CAGGATCAACAGAAACACCCAC 59.446 50.000 0.00 0.00 0.00 4.61
353 354 1.535462 GGATCAACAGAAACACCCACG 59.465 52.381 0.00 0.00 0.00 4.94
354 355 2.218603 GATCAACAGAAACACCCACGT 58.781 47.619 0.00 0.00 0.00 4.49
355 356 1.658994 TCAACAGAAACACCCACGTC 58.341 50.000 0.00 0.00 0.00 4.34
356 357 0.661020 CAACAGAAACACCCACGTCC 59.339 55.000 0.00 0.00 0.00 4.79
357 358 0.812412 AACAGAAACACCCACGTCCG 60.812 55.000 0.00 0.00 0.00 4.79
358 359 1.068417 CAGAAACACCCACGTCCGA 59.932 57.895 0.00 0.00 0.00 4.55
359 360 0.320421 CAGAAACACCCACGTCCGAT 60.320 55.000 0.00 0.00 0.00 4.18
360 361 1.067425 CAGAAACACCCACGTCCGATA 60.067 52.381 0.00 0.00 0.00 2.92
361 362 1.619827 AGAAACACCCACGTCCGATAA 59.380 47.619 0.00 0.00 0.00 1.75
362 363 1.997606 GAAACACCCACGTCCGATAAG 59.002 52.381 0.00 0.00 0.00 1.73
363 364 1.259609 AACACCCACGTCCGATAAGA 58.740 50.000 0.00 0.00 0.00 2.10
364 365 1.481871 ACACCCACGTCCGATAAGAT 58.518 50.000 0.00 0.00 0.00 2.40
365 366 2.658285 ACACCCACGTCCGATAAGATA 58.342 47.619 0.00 0.00 0.00 1.98
366 367 3.228453 ACACCCACGTCCGATAAGATAT 58.772 45.455 0.00 0.00 0.00 1.63
367 368 3.005472 ACACCCACGTCCGATAAGATATG 59.995 47.826 0.00 0.00 0.00 1.78
368 369 3.254903 CACCCACGTCCGATAAGATATGA 59.745 47.826 0.00 0.00 0.00 2.15
369 370 3.893200 ACCCACGTCCGATAAGATATGAA 59.107 43.478 0.00 0.00 0.00 2.57
370 371 4.022242 ACCCACGTCCGATAAGATATGAAG 60.022 45.833 0.00 0.00 0.00 3.02
371 372 3.921021 CCACGTCCGATAAGATATGAAGC 59.079 47.826 0.00 0.00 0.00 3.86
372 373 4.546570 CACGTCCGATAAGATATGAAGCA 58.453 43.478 0.00 0.00 0.00 3.91
373 374 4.982295 CACGTCCGATAAGATATGAAGCAA 59.018 41.667 0.00 0.00 0.00 3.91
374 375 5.117745 CACGTCCGATAAGATATGAAGCAAG 59.882 44.000 0.00 0.00 0.00 4.01
375 376 5.221263 ACGTCCGATAAGATATGAAGCAAGT 60.221 40.000 0.00 0.00 0.00 3.16
376 377 5.117745 CGTCCGATAAGATATGAAGCAAGTG 59.882 44.000 0.00 0.00 0.00 3.16
377 378 6.216569 GTCCGATAAGATATGAAGCAAGTGA 58.783 40.000 0.00 0.00 0.00 3.41
378 379 6.701841 GTCCGATAAGATATGAAGCAAGTGAA 59.298 38.462 0.00 0.00 0.00 3.18
379 380 6.701841 TCCGATAAGATATGAAGCAAGTGAAC 59.298 38.462 0.00 0.00 0.00 3.18
380 381 6.479990 CCGATAAGATATGAAGCAAGTGAACA 59.520 38.462 0.00 0.00 0.00 3.18
381 382 7.172190 CCGATAAGATATGAAGCAAGTGAACAT 59.828 37.037 0.00 0.00 0.00 2.71
382 383 8.219769 CGATAAGATATGAAGCAAGTGAACATC 58.780 37.037 0.00 0.00 0.00 3.06
383 384 6.690194 AAGATATGAAGCAAGTGAACATCC 57.310 37.500 0.00 0.00 0.00 3.51
384 385 4.813161 AGATATGAAGCAAGTGAACATCCG 59.187 41.667 0.00 0.00 0.00 4.18
385 386 2.542020 TGAAGCAAGTGAACATCCGA 57.458 45.000 0.00 0.00 0.00 4.55
386 387 2.416747 TGAAGCAAGTGAACATCCGAG 58.583 47.619 0.00 0.00 0.00 4.63
387 388 2.037121 TGAAGCAAGTGAACATCCGAGA 59.963 45.455 0.00 0.00 0.00 4.04
388 389 2.376808 AGCAAGTGAACATCCGAGAG 57.623 50.000 0.00 0.00 0.00 3.20
389 390 1.895798 AGCAAGTGAACATCCGAGAGA 59.104 47.619 0.00 0.00 0.00 3.10
390 391 2.094286 AGCAAGTGAACATCCGAGAGAG 60.094 50.000 0.00 0.00 0.00 3.20
391 392 2.266554 CAAGTGAACATCCGAGAGAGC 58.733 52.381 0.00 0.00 0.00 4.09
392 393 1.550327 AGTGAACATCCGAGAGAGCA 58.450 50.000 0.00 0.00 0.00 4.26
393 394 1.476085 AGTGAACATCCGAGAGAGCAG 59.524 52.381 0.00 0.00 0.00 4.24
394 395 0.820226 TGAACATCCGAGAGAGCAGG 59.180 55.000 0.00 0.00 0.00 4.85
395 396 0.820871 GAACATCCGAGAGAGCAGGT 59.179 55.000 0.00 0.00 0.00 4.00
396 397 2.025155 GAACATCCGAGAGAGCAGGTA 58.975 52.381 0.00 0.00 0.00 3.08
397 398 2.145397 ACATCCGAGAGAGCAGGTAA 57.855 50.000 0.00 0.00 0.00 2.85
398 399 2.457598 ACATCCGAGAGAGCAGGTAAA 58.542 47.619 0.00 0.00 0.00 2.01
399 400 2.832129 ACATCCGAGAGAGCAGGTAAAA 59.168 45.455 0.00 0.00 0.00 1.52
400 401 3.452627 ACATCCGAGAGAGCAGGTAAAAT 59.547 43.478 0.00 0.00 0.00 1.82
401 402 3.526931 TCCGAGAGAGCAGGTAAAATG 57.473 47.619 0.00 0.00 0.00 2.32
402 403 3.096852 TCCGAGAGAGCAGGTAAAATGA 58.903 45.455 0.00 0.00 0.00 2.57
403 404 3.131223 TCCGAGAGAGCAGGTAAAATGAG 59.869 47.826 0.00 0.00 0.00 2.90
404 405 3.131223 CCGAGAGAGCAGGTAAAATGAGA 59.869 47.826 0.00 0.00 0.00 3.27
405 406 4.109050 CGAGAGAGCAGGTAAAATGAGAC 58.891 47.826 0.00 0.00 0.00 3.36
406 407 4.109050 GAGAGAGCAGGTAAAATGAGACG 58.891 47.826 0.00 0.00 0.00 4.18
407 408 3.764434 AGAGAGCAGGTAAAATGAGACGA 59.236 43.478 0.00 0.00 0.00 4.20
408 409 4.220821 AGAGAGCAGGTAAAATGAGACGAA 59.779 41.667 0.00 0.00 0.00 3.85
409 410 4.499183 AGAGCAGGTAAAATGAGACGAAG 58.501 43.478 0.00 0.00 0.00 3.79
410 411 3.600388 AGCAGGTAAAATGAGACGAAGG 58.400 45.455 0.00 0.00 0.00 3.46
411 412 2.678336 GCAGGTAAAATGAGACGAAGGG 59.322 50.000 0.00 0.00 0.00 3.95
412 413 3.270877 CAGGTAAAATGAGACGAAGGGG 58.729 50.000 0.00 0.00 0.00 4.79
413 414 3.055385 CAGGTAAAATGAGACGAAGGGGA 60.055 47.826 0.00 0.00 0.00 4.81
414 415 3.197983 AGGTAAAATGAGACGAAGGGGAG 59.802 47.826 0.00 0.00 0.00 4.30
415 416 2.789409 AAAATGAGACGAAGGGGAGG 57.211 50.000 0.00 0.00 0.00 4.30
416 417 0.912486 AAATGAGACGAAGGGGAGGG 59.088 55.000 0.00 0.00 0.00 4.30
417 418 0.983378 AATGAGACGAAGGGGAGGGG 60.983 60.000 0.00 0.00 0.00 4.79
418 419 2.764547 GAGACGAAGGGGAGGGGG 60.765 72.222 0.00 0.00 0.00 5.40
433 434 3.721706 GGGGAGTGGGCTGGAGTG 61.722 72.222 0.00 0.00 0.00 3.51
434 435 3.721706 GGGAGTGGGCTGGAGTGG 61.722 72.222 0.00 0.00 0.00 4.00
503 504 9.626045 ATTTCAAATCCGTAGAAAAATGAAGAC 57.374 29.630 0.00 0.00 0.00 3.01
618 641 1.102222 GTCCCTCCTAGACGTGCGAT 61.102 60.000 0.00 0.00 0.00 4.58
631 654 4.683320 AGACGTGCGATTAATGATCATCAG 59.317 41.667 9.06 0.49 34.23 2.90
637 660 8.223100 CGTGCGATTAATGATCATCAGATTTTA 58.777 33.333 9.06 0.00 33.72 1.52
638 661 9.882996 GTGCGATTAATGATCATCAGATTTTAA 57.117 29.630 9.06 3.38 33.72 1.52
680 705 3.744942 CAGATCGTGATCCATGTTCCATC 59.255 47.826 6.24 0.00 38.58 3.51
805 1171 2.897762 GCGGGTAACAACCTCCCCA 61.898 63.158 0.00 0.00 38.09 4.96
895 1261 2.159627 CCTGCTTCGCAATTTACGACTT 59.840 45.455 0.00 0.00 39.67 3.01
1007 1373 3.554692 CCTCACGCGAATGCCGAC 61.555 66.667 15.93 0.00 41.76 4.79
1953 2319 7.869800 AGTCATCTTTTTAAGACTCTGCAAAG 58.130 34.615 0.00 0.00 41.01 2.77
2101 2468 3.368323 CGGAAGCTTAATTTGGTGGCAAT 60.368 43.478 0.00 0.00 0.00 3.56
2114 2481 1.350684 GTGGCAATGAAATGGGGGTTT 59.649 47.619 0.00 0.00 0.00 3.27
2327 2694 5.338219 CCCTGATAGATTGAAGATGCCCTAG 60.338 48.000 0.00 0.00 0.00 3.02
2403 2770 6.425735 TGGATGGTAGAATGTGAATTGTCAT 58.574 36.000 0.00 0.00 35.80 3.06
2404 2771 6.319405 TGGATGGTAGAATGTGAATTGTCATG 59.681 38.462 0.00 0.00 35.80 3.07
2405 2772 6.319658 GGATGGTAGAATGTGAATTGTCATGT 59.680 38.462 0.00 0.00 35.80 3.21
2406 2773 7.148018 GGATGGTAGAATGTGAATTGTCATGTT 60.148 37.037 0.00 0.00 35.80 2.71
2407 2774 8.806429 ATGGTAGAATGTGAATTGTCATGTTA 57.194 30.769 0.00 0.00 35.80 2.41
2408 2775 8.267620 TGGTAGAATGTGAATTGTCATGTTAG 57.732 34.615 0.00 0.00 35.80 2.34
2409 2776 7.148255 TGGTAGAATGTGAATTGTCATGTTAGC 60.148 37.037 0.00 0.00 35.80 3.09
2410 2777 6.822667 AGAATGTGAATTGTCATGTTAGCA 57.177 33.333 0.00 0.00 35.80 3.49
2411 2778 6.615088 AGAATGTGAATTGTCATGTTAGCAC 58.385 36.000 0.00 0.00 35.80 4.40
2412 2779 6.432162 AGAATGTGAATTGTCATGTTAGCACT 59.568 34.615 0.00 0.00 35.80 4.40
2413 2780 6.579666 ATGTGAATTGTCATGTTAGCACTT 57.420 33.333 0.00 0.00 35.80 3.16
2414 2781 7.686438 ATGTGAATTGTCATGTTAGCACTTA 57.314 32.000 0.00 0.00 35.80 2.24
2415 2782 7.132694 TGTGAATTGTCATGTTAGCACTTAG 57.867 36.000 0.00 0.00 35.80 2.18
2416 2783 6.710295 TGTGAATTGTCATGTTAGCACTTAGT 59.290 34.615 0.00 0.00 35.80 2.24
2451 2818 2.117137 CTGAAATGCGATGAATGCAGC 58.883 47.619 0.00 0.00 46.98 5.25
2477 2854 2.231964 GCCCAACATGATCTTTTCTGCA 59.768 45.455 0.00 0.00 0.00 4.41
2517 2894 8.615360 TTGGGGGAATTTTGTTCATCAATATA 57.385 30.769 0.00 0.00 35.84 0.86
2700 3077 4.527509 ATCTACAAGGTATCAGATGGCG 57.472 45.455 0.00 0.00 0.00 5.69
2790 3167 1.002430 GCAGGTGGTCACTTCATGAGA 59.998 52.381 0.00 0.00 38.28 3.27
2869 3246 4.149598 ACTTCAGGTATTTGTTGAACCCC 58.850 43.478 0.00 0.00 33.53 4.95
2887 3264 2.460669 CCCCTCCCAAATTTCTGAAGG 58.539 52.381 0.00 0.00 0.00 3.46
2894 3271 7.473593 CCTCCCAAATTTCTGAAGGGATATAT 58.526 38.462 13.67 0.00 46.81 0.86
3007 3384 8.383175 ACCTACCATACCATGATACCAAATAAG 58.617 37.037 0.00 0.00 0.00 1.73
3091 3468 0.321671 CCCGTGTGAAGGACAGATGT 59.678 55.000 0.00 0.00 34.28 3.06
3335 3712 6.174720 AGTTATCCATGTTGGTCATCGTAT 57.825 37.500 0.00 0.00 39.03 3.06
3406 3783 6.690194 GGATATATCCTTGCCTGCTATTTG 57.310 41.667 22.50 0.00 43.73 2.32
3426 3803 0.872388 ACGCAGTTTTCGGGATGAAC 59.128 50.000 0.00 0.00 37.78 3.18
3504 3881 1.334419 GCCAACGTGATGCTGATATGC 60.334 52.381 0.00 0.00 0.00 3.14
3638 4015 3.117888 AGGCACCTGAAACTCTTCAAAGA 60.118 43.478 0.00 0.00 41.05 2.52
3651 4028 0.110486 TCAAAGACCACAGGGAAGGC 59.890 55.000 0.00 0.00 38.05 4.35
3669 4046 1.522355 CTACATGCGCCTGTGAGGG 60.522 63.158 25.90 10.92 35.37 4.30
3692 4069 4.009675 GAGCATCACAGGTAAAATGGTGA 58.990 43.478 0.00 0.00 43.61 4.02
3715 4094 8.236586 GTGACAGCAGTTAATTAACATGAATGA 58.763 33.333 26.06 6.35 38.62 2.57
3747 4126 8.267183 TCTTATGTATGCTCATCTCCTTGAAAA 58.733 33.333 0.00 0.00 0.00 2.29
3749 4128 5.559770 TGTATGCTCATCTCCTTGAAAACA 58.440 37.500 0.00 0.00 0.00 2.83
3750 4129 5.412594 TGTATGCTCATCTCCTTGAAAACAC 59.587 40.000 0.00 0.00 0.00 3.32
3789 4169 1.062428 CCTGTACTCACCTGGGGGATA 60.062 57.143 0.00 0.00 36.25 2.59
3794 4174 1.916181 ACTCACCTGGGGGATACTTTG 59.084 52.381 0.00 0.00 36.25 2.77
3830 4210 1.196012 AGGGAAGATCCGAGGTGTTC 58.804 55.000 0.00 0.00 37.43 3.18
3843 4223 1.523154 GGTGTTCCATTGGCAGCGAA 61.523 55.000 0.00 0.00 0.00 4.70
3849 4229 1.891811 TCCATTGGCAGCGAAAAATCA 59.108 42.857 0.00 0.00 0.00 2.57
3861 4241 6.732154 CAGCGAAAAATCATGATACCAAGAT 58.268 36.000 9.04 0.00 32.65 2.40
3924 4304 3.712218 GACAGAAAACTAGATAGGGGCCT 59.288 47.826 0.84 0.00 0.00 5.19
4272 4655 5.136828 TGGCTTCATTGTTTAGACCAAGAA 58.863 37.500 0.00 0.00 0.00 2.52
4323 4706 6.976925 GGTCCAAAAGCATCTTCAGAATATTG 59.023 38.462 0.00 0.00 0.00 1.90
4334 4717 7.979444 TCTTCAGAATATTGACGGTTTCTTT 57.021 32.000 0.00 0.00 0.00 2.52
4359 4742 5.329035 ACCAGCCAACATAATTCATGAAC 57.671 39.130 11.07 0.00 38.10 3.18
4546 4929 1.228124 TTTCCACGCCACCAAGGAG 60.228 57.895 0.00 0.00 43.77 3.69
4586 4969 5.238583 CGAAGAACTAATCCCACTTCAACT 58.761 41.667 0.00 0.00 37.42 3.16
4587 4970 6.395629 CGAAGAACTAATCCCACTTCAACTA 58.604 40.000 0.00 0.00 37.42 2.24
4588 4971 7.042335 CGAAGAACTAATCCCACTTCAACTAT 58.958 38.462 0.00 0.00 37.42 2.12
4589 4972 8.195436 CGAAGAACTAATCCCACTTCAACTATA 58.805 37.037 0.00 0.00 37.42 1.31
4591 4974 9.838339 AAGAACTAATCCCACTTCAACTATATG 57.162 33.333 0.00 0.00 0.00 1.78
4592 4975 9.213777 AGAACTAATCCCACTTCAACTATATGA 57.786 33.333 0.00 0.00 0.00 2.15
4593 4976 9.262358 GAACTAATCCCACTTCAACTATATGAC 57.738 37.037 0.00 0.00 0.00 3.06
4647 5030 1.503542 GAGGGCAGTTGCAATCACG 59.496 57.895 0.59 0.00 44.36 4.35
4656 5039 3.062763 AGTTGCAATCACGACTCTTCAG 58.937 45.455 0.59 0.00 27.24 3.02
4657 5040 2.802816 GTTGCAATCACGACTCTTCAGT 59.197 45.455 0.59 0.00 34.57 3.41
4658 5041 2.677199 TGCAATCACGACTCTTCAGTC 58.323 47.619 0.00 0.00 45.19 3.51
4659 5042 2.297315 TGCAATCACGACTCTTCAGTCT 59.703 45.455 0.00 0.00 46.31 3.24
4660 5043 3.243873 TGCAATCACGACTCTTCAGTCTT 60.244 43.478 0.00 0.00 46.31 3.01
4661 5044 3.366422 GCAATCACGACTCTTCAGTCTTC 59.634 47.826 0.00 0.00 46.31 2.87
4662 5045 4.550422 CAATCACGACTCTTCAGTCTTCA 58.450 43.478 0.00 0.00 46.31 3.02
4663 5046 3.627732 TCACGACTCTTCAGTCTTCAC 57.372 47.619 0.00 0.00 46.31 3.18
4664 5047 3.215151 TCACGACTCTTCAGTCTTCACT 58.785 45.455 0.00 0.00 46.31 3.41
4665 5048 4.386711 TCACGACTCTTCAGTCTTCACTA 58.613 43.478 0.00 0.00 46.31 2.74
4666 5049 5.004448 TCACGACTCTTCAGTCTTCACTAT 58.996 41.667 0.00 0.00 46.31 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.753272 CGAGACCAGATTCATGTTTTGGT 59.247 43.478 11.53 11.53 44.42 3.67
1 2 4.002982 TCGAGACCAGATTCATGTTTTGG 58.997 43.478 0.00 0.00 35.07 3.28
2 3 4.434725 CGTCGAGACCAGATTCATGTTTTG 60.435 45.833 0.00 0.00 0.00 2.44
3 4 3.679980 CGTCGAGACCAGATTCATGTTTT 59.320 43.478 0.00 0.00 0.00 2.43
4 5 3.254060 CGTCGAGACCAGATTCATGTTT 58.746 45.455 0.00 0.00 0.00 2.83
5 6 2.881074 CGTCGAGACCAGATTCATGTT 58.119 47.619 0.00 0.00 0.00 2.71
6 7 1.469940 GCGTCGAGACCAGATTCATGT 60.470 52.381 0.00 0.00 0.00 3.21
7 8 1.203928 GCGTCGAGACCAGATTCATG 58.796 55.000 0.00 0.00 0.00 3.07
8 9 0.103208 GGCGTCGAGACCAGATTCAT 59.897 55.000 0.00 0.00 0.00 2.57
9 10 1.511305 GGCGTCGAGACCAGATTCA 59.489 57.895 0.00 0.00 0.00 2.57
10 11 4.403976 GGCGTCGAGACCAGATTC 57.596 61.111 0.00 0.00 0.00 2.52
17 18 3.902086 GCTAGGGGGCGTCGAGAC 61.902 72.222 0.00 0.00 0.00 3.36
28 29 1.389609 TAGAGGTTTCGCCGCTAGGG 61.390 60.000 0.00 0.00 45.87 3.53
29 30 2.112898 TAGAGGTTTCGCCGCTAGG 58.887 57.895 0.00 0.00 45.87 3.02
31 32 0.179156 CGTTAGAGGTTTCGCCGCTA 60.179 55.000 0.00 0.00 45.87 4.26
33 34 1.287041 AACGTTAGAGGTTTCGCCGC 61.287 55.000 0.00 0.00 43.70 6.53
34 35 0.712222 GAACGTTAGAGGTTTCGCCG 59.288 55.000 0.00 0.00 43.70 6.46
35 36 1.073964 GGAACGTTAGAGGTTTCGCC 58.926 55.000 0.00 0.00 37.58 5.54
36 37 1.725164 CTGGAACGTTAGAGGTTTCGC 59.275 52.381 0.00 0.00 0.00 4.70
37 38 3.293311 TCTGGAACGTTAGAGGTTTCG 57.707 47.619 0.00 0.00 0.00 3.46
38 39 5.811100 CCTATTCTGGAACGTTAGAGGTTTC 59.189 44.000 0.00 0.00 0.00 2.78
39 40 5.338137 CCCTATTCTGGAACGTTAGAGGTTT 60.338 44.000 0.00 0.00 0.00 3.27
40 41 4.161754 CCCTATTCTGGAACGTTAGAGGTT 59.838 45.833 0.00 0.00 0.00 3.50
41 42 3.705072 CCCTATTCTGGAACGTTAGAGGT 59.295 47.826 0.00 0.00 0.00 3.85
42 43 3.492829 GCCCTATTCTGGAACGTTAGAGG 60.493 52.174 0.00 0.69 0.00 3.69
43 44 3.385111 AGCCCTATTCTGGAACGTTAGAG 59.615 47.826 0.00 0.00 0.00 2.43
44 45 3.371965 AGCCCTATTCTGGAACGTTAGA 58.628 45.455 0.00 0.00 0.00 2.10
45 46 3.821421 AGCCCTATTCTGGAACGTTAG 57.179 47.619 0.00 0.00 0.00 2.34
46 47 4.020039 TGAAAGCCCTATTCTGGAACGTTA 60.020 41.667 0.00 0.00 0.00 3.18
47 48 3.244770 TGAAAGCCCTATTCTGGAACGTT 60.245 43.478 0.00 0.00 0.00 3.99
48 49 2.304761 TGAAAGCCCTATTCTGGAACGT 59.695 45.455 0.00 0.00 0.00 3.99
49 50 2.985896 TGAAAGCCCTATTCTGGAACG 58.014 47.619 0.00 0.00 0.00 3.95
50 51 5.921962 AAATGAAAGCCCTATTCTGGAAC 57.078 39.130 0.00 0.00 0.00 3.62
51 52 7.944554 CCTATAAATGAAAGCCCTATTCTGGAA 59.055 37.037 0.00 0.00 0.00 3.53
52 53 7.294720 TCCTATAAATGAAAGCCCTATTCTGGA 59.705 37.037 0.00 0.00 0.00 3.86
53 54 7.391833 GTCCTATAAATGAAAGCCCTATTCTGG 59.608 40.741 0.00 0.00 0.00 3.86
54 55 7.939039 TGTCCTATAAATGAAAGCCCTATTCTG 59.061 37.037 0.00 0.00 0.00 3.02
55 56 8.045720 TGTCCTATAAATGAAAGCCCTATTCT 57.954 34.615 0.00 0.00 0.00 2.40
56 57 8.691661 TTGTCCTATAAATGAAAGCCCTATTC 57.308 34.615 0.00 0.00 0.00 1.75
57 58 9.660544 ATTTGTCCTATAAATGAAAGCCCTATT 57.339 29.630 0.00 0.00 0.00 1.73
58 59 9.660544 AATTTGTCCTATAAATGAAAGCCCTAT 57.339 29.630 0.00 0.00 0.00 2.57
59 60 9.487442 AAATTTGTCCTATAAATGAAAGCCCTA 57.513 29.630 0.00 0.00 0.00 3.53
60 61 7.978099 AATTTGTCCTATAAATGAAAGCCCT 57.022 32.000 0.00 0.00 0.00 5.19
61 62 9.448438 AAAAATTTGTCCTATAAATGAAAGCCC 57.552 29.630 0.00 0.00 0.00 5.19
70 71 9.796120 CTCCGCATTAAAAATTTGTCCTATAAA 57.204 29.630 0.00 0.00 0.00 1.40
71 72 9.179909 TCTCCGCATTAAAAATTTGTCCTATAA 57.820 29.630 0.00 0.00 0.00 0.98
72 73 8.617809 GTCTCCGCATTAAAAATTTGTCCTATA 58.382 33.333 0.00 0.00 0.00 1.31
73 74 7.339466 AGTCTCCGCATTAAAAATTTGTCCTAT 59.661 33.333 0.00 0.00 0.00 2.57
74 75 6.657541 AGTCTCCGCATTAAAAATTTGTCCTA 59.342 34.615 0.00 0.00 0.00 2.94
75 76 5.476945 AGTCTCCGCATTAAAAATTTGTCCT 59.523 36.000 0.00 0.00 0.00 3.85
76 77 5.709966 AGTCTCCGCATTAAAAATTTGTCC 58.290 37.500 0.00 0.00 0.00 4.02
77 78 7.692705 GTCTAGTCTCCGCATTAAAAATTTGTC 59.307 37.037 0.00 0.00 0.00 3.18
78 79 7.361799 GGTCTAGTCTCCGCATTAAAAATTTGT 60.362 37.037 0.00 0.00 0.00 2.83
79 80 6.967199 GGTCTAGTCTCCGCATTAAAAATTTG 59.033 38.462 0.00 0.00 0.00 2.32
80 81 6.884836 AGGTCTAGTCTCCGCATTAAAAATTT 59.115 34.615 0.00 0.00 0.00 1.82
81 82 6.316390 CAGGTCTAGTCTCCGCATTAAAAATT 59.684 38.462 0.00 0.00 0.00 1.82
82 83 5.817816 CAGGTCTAGTCTCCGCATTAAAAAT 59.182 40.000 0.00 0.00 0.00 1.82
83 84 5.175859 CAGGTCTAGTCTCCGCATTAAAAA 58.824 41.667 0.00 0.00 0.00 1.94
84 85 4.755411 CAGGTCTAGTCTCCGCATTAAAA 58.245 43.478 0.00 0.00 0.00 1.52
85 86 3.430374 GCAGGTCTAGTCTCCGCATTAAA 60.430 47.826 0.00 0.00 0.00 1.52
86 87 2.100916 GCAGGTCTAGTCTCCGCATTAA 59.899 50.000 0.00 0.00 0.00 1.40
87 88 1.681793 GCAGGTCTAGTCTCCGCATTA 59.318 52.381 0.00 0.00 0.00 1.90
88 89 0.461961 GCAGGTCTAGTCTCCGCATT 59.538 55.000 0.00 0.00 0.00 3.56
89 90 0.684479 TGCAGGTCTAGTCTCCGCAT 60.684 55.000 12.25 0.00 32.12 4.73
90 91 0.898326 TTGCAGGTCTAGTCTCCGCA 60.898 55.000 12.25 12.25 33.93 5.69
91 92 0.179124 CTTGCAGGTCTAGTCTCCGC 60.179 60.000 0.00 1.55 0.00 5.54
92 93 0.179124 GCTTGCAGGTCTAGTCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
93 94 0.179124 CGCTTGCAGGTCTAGTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
94 95 0.179124 CCGCTTGCAGGTCTAGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
95 96 1.893786 CCGCTTGCAGGTCTAGTCT 59.106 57.895 0.00 0.00 0.00 3.24
96 97 1.811679 GCCGCTTGCAGGTCTAGTC 60.812 63.158 0.00 0.00 40.77 2.59
97 98 0.970937 TAGCCGCTTGCAGGTCTAGT 60.971 55.000 0.00 0.00 44.83 2.57
98 99 0.175760 TTAGCCGCTTGCAGGTCTAG 59.824 55.000 0.00 0.00 44.83 2.43
99 100 0.611200 TTTAGCCGCTTGCAGGTCTA 59.389 50.000 0.00 0.00 44.83 2.59
100 101 0.955919 GTTTAGCCGCTTGCAGGTCT 60.956 55.000 0.00 0.00 44.83 3.85
101 102 1.234615 TGTTTAGCCGCTTGCAGGTC 61.235 55.000 0.00 0.00 44.83 3.85
102 103 1.228124 TGTTTAGCCGCTTGCAGGT 60.228 52.632 0.00 0.00 44.83 4.00
103 104 1.503542 CTGTTTAGCCGCTTGCAGG 59.496 57.895 0.00 0.00 44.83 4.85
104 105 0.955428 TCCTGTTTAGCCGCTTGCAG 60.955 55.000 0.00 4.98 44.83 4.41
105 106 0.322456 ATCCTGTTTAGCCGCTTGCA 60.322 50.000 0.00 0.00 44.83 4.08
106 107 0.811281 AATCCTGTTTAGCCGCTTGC 59.189 50.000 0.00 0.00 41.71 4.01
107 108 3.938963 TCTAAATCCTGTTTAGCCGCTTG 59.061 43.478 0.00 0.00 33.29 4.01
108 109 4.216411 TCTAAATCCTGTTTAGCCGCTT 57.784 40.909 0.00 0.00 33.29 4.68
109 110 3.906720 TCTAAATCCTGTTTAGCCGCT 57.093 42.857 0.00 0.00 33.29 5.52
110 111 3.242316 CGTTCTAAATCCTGTTTAGCCGC 60.242 47.826 3.33 0.00 33.29 6.53
111 112 3.930848 ACGTTCTAAATCCTGTTTAGCCG 59.069 43.478 13.08 13.08 34.89 5.52
112 113 5.874895 AACGTTCTAAATCCTGTTTAGCC 57.125 39.130 0.00 0.00 33.29 3.93
113 114 6.084277 CCAAACGTTCTAAATCCTGTTTAGC 58.916 40.000 0.00 0.00 33.29 3.09
114 115 7.198306 ACCAAACGTTCTAAATCCTGTTTAG 57.802 36.000 0.00 2.02 34.26 1.85
115 116 6.073657 CGACCAAACGTTCTAAATCCTGTTTA 60.074 38.462 0.00 0.00 0.00 2.01
116 117 5.277634 CGACCAAACGTTCTAAATCCTGTTT 60.278 40.000 0.00 0.00 0.00 2.83
117 118 4.212636 CGACCAAACGTTCTAAATCCTGTT 59.787 41.667 0.00 0.00 0.00 3.16
118 119 3.744426 CGACCAAACGTTCTAAATCCTGT 59.256 43.478 0.00 0.00 0.00 4.00
119 120 3.124636 CCGACCAAACGTTCTAAATCCTG 59.875 47.826 0.00 0.00 0.00 3.86
120 121 3.007182 TCCGACCAAACGTTCTAAATCCT 59.993 43.478 0.00 0.00 0.00 3.24
121 122 3.124128 GTCCGACCAAACGTTCTAAATCC 59.876 47.826 0.00 0.00 0.00 3.01
122 123 3.124128 GGTCCGACCAAACGTTCTAAATC 59.876 47.826 13.05 0.00 38.42 2.17
123 124 3.069289 GGTCCGACCAAACGTTCTAAAT 58.931 45.455 13.05 0.00 38.42 1.40
124 125 2.482864 GGTCCGACCAAACGTTCTAAA 58.517 47.619 13.05 0.00 38.42 1.85
125 126 1.270252 GGGTCCGACCAAACGTTCTAA 60.270 52.381 19.43 0.00 41.02 2.10
126 127 0.318120 GGGTCCGACCAAACGTTCTA 59.682 55.000 19.43 0.00 41.02 2.10
127 128 1.070275 GGGTCCGACCAAACGTTCT 59.930 57.895 19.43 0.00 41.02 3.01
128 129 1.962822 GGGGTCCGACCAAACGTTC 60.963 63.158 19.43 0.00 41.02 3.95
129 130 2.111669 GGGGTCCGACCAAACGTT 59.888 61.111 19.43 0.00 41.02 3.99
130 131 2.845795 AGGGGTCCGACCAAACGT 60.846 61.111 19.43 1.04 41.02 3.99
131 132 2.047560 GAGGGGTCCGACCAAACG 60.048 66.667 19.43 0.00 41.02 3.60
132 133 0.605589 CAAGAGGGGTCCGACCAAAC 60.606 60.000 19.43 8.73 41.02 2.93
133 134 0.765135 TCAAGAGGGGTCCGACCAAA 60.765 55.000 19.43 0.00 41.02 3.28
134 135 1.152204 TCAAGAGGGGTCCGACCAA 60.152 57.895 19.43 0.00 41.02 3.67
135 136 1.911766 GTCAAGAGGGGTCCGACCA 60.912 63.158 19.43 0.00 41.02 4.02
136 137 1.192803 AAGTCAAGAGGGGTCCGACC 61.193 60.000 9.30 9.30 37.60 4.79
137 138 0.037232 CAAGTCAAGAGGGGTCCGAC 60.037 60.000 0.00 0.00 0.00 4.79
138 139 1.192146 CCAAGTCAAGAGGGGTCCGA 61.192 60.000 0.00 0.00 0.00 4.55
139 140 1.296715 CCAAGTCAAGAGGGGTCCG 59.703 63.158 0.00 0.00 0.00 4.79
140 141 1.685820 CCCAAGTCAAGAGGGGTCC 59.314 63.158 0.00 0.00 38.98 4.46
145 146 0.912486 CCCCTACCCAAGTCAAGAGG 59.088 60.000 0.00 0.00 0.00 3.69
146 147 0.912486 CCCCCTACCCAAGTCAAGAG 59.088 60.000 0.00 0.00 0.00 2.85
147 148 3.098445 CCCCCTACCCAAGTCAAGA 57.902 57.895 0.00 0.00 0.00 3.02
173 174 3.041940 GACGGTTGTGGCCTGTCG 61.042 66.667 3.32 3.61 0.00 4.35
174 175 2.668550 GGACGGTTGTGGCCTGTC 60.669 66.667 3.32 2.36 34.07 3.51
175 176 4.619227 CGGACGGTTGTGGCCTGT 62.619 66.667 3.32 0.00 0.00 4.00
188 189 4.603946 GATACTGGGGCGGCGGAC 62.604 72.222 9.78 0.00 0.00 4.79
193 194 2.203182 TAGGGGATACTGGGGCGG 59.797 66.667 0.00 0.00 0.00 6.13
194 195 2.214920 GGTAGGGGATACTGGGGCG 61.215 68.421 0.00 0.00 34.56 6.13
195 196 2.214920 CGGTAGGGGATACTGGGGC 61.215 68.421 0.00 0.00 37.15 5.80
196 197 4.210158 CGGTAGGGGATACTGGGG 57.790 66.667 0.00 0.00 37.15 4.96
199 200 2.214920 GGGCCGGTAGGGGATACTG 61.215 68.421 1.90 0.00 40.04 2.74
200 201 2.203466 GGGCCGGTAGGGGATACT 59.797 66.667 1.90 0.00 38.20 2.12
201 202 2.926779 GGGGCCGGTAGGGGATAC 60.927 72.222 1.90 0.00 38.20 2.24
202 203 3.121856 AGGGGCCGGTAGGGGATA 61.122 66.667 1.90 0.00 38.20 2.59
203 204 4.900259 CAGGGGCCGGTAGGGGAT 62.900 72.222 1.90 0.00 38.20 3.85
215 216 3.305516 GTTGTTGCTGCCCAGGGG 61.306 66.667 7.91 3.48 38.57 4.79
216 217 3.673484 CGTTGTTGCTGCCCAGGG 61.673 66.667 0.00 0.00 0.00 4.45
217 218 4.347453 GCGTTGTTGCTGCCCAGG 62.347 66.667 0.00 0.00 0.00 4.45
218 219 4.347453 GGCGTTGTTGCTGCCCAG 62.347 66.667 0.00 0.00 43.06 4.45
222 223 4.268939 TGCTGGCGTTGTTGCTGC 62.269 61.111 0.00 0.00 35.82 5.25
223 224 2.050714 CTGCTGGCGTTGTTGCTG 60.051 61.111 0.00 0.00 34.52 4.41
224 225 2.203195 TCTGCTGGCGTTGTTGCT 60.203 55.556 0.00 0.00 34.52 3.91
225 226 2.253452 CTCTGCTGGCGTTGTTGC 59.747 61.111 0.00 0.00 0.00 4.17
226 227 2.949106 CCTCTGCTGGCGTTGTTG 59.051 61.111 0.00 0.00 0.00 3.33
227 228 2.980233 GCCTCTGCTGGCGTTGTT 60.980 61.111 0.66 0.00 43.74 2.83
250 251 1.305549 ATTGCCAAGGCCAAGGAGG 60.306 57.895 16.96 6.16 41.09 4.30
251 252 1.660560 CGATTGCCAAGGCCAAGGAG 61.661 60.000 16.96 0.00 41.09 3.69
252 253 1.678635 CGATTGCCAAGGCCAAGGA 60.679 57.895 16.96 0.00 41.09 3.36
253 254 2.887360 CGATTGCCAAGGCCAAGG 59.113 61.111 5.01 7.44 41.09 3.61
254 255 2.182537 GCGATTGCCAAGGCCAAG 59.817 61.111 5.01 0.00 41.09 3.61
271 272 0.679640 TAATGAGGTTGCCCAAGCGG 60.680 55.000 4.75 0.00 44.31 5.52
272 273 0.734889 CTAATGAGGTTGCCCAAGCG 59.265 55.000 4.75 0.00 44.31 4.68
273 274 0.457443 GCTAATGAGGTTGCCCAAGC 59.543 55.000 2.17 2.17 38.96 4.01
274 275 1.106285 GGCTAATGAGGTTGCCCAAG 58.894 55.000 0.00 0.00 39.49 3.61
275 276 3.281332 GGCTAATGAGGTTGCCCAA 57.719 52.632 0.00 0.00 39.49 4.12
278 279 2.729028 TTAGGGCTAATGAGGTTGCC 57.271 50.000 0.00 0.00 44.22 4.52
287 288 6.385467 AGTTTCTCTCTGTCATTAGGGCTAAT 59.615 38.462 0.00 0.00 36.27 1.73
288 289 5.721960 AGTTTCTCTCTGTCATTAGGGCTAA 59.278 40.000 0.00 0.00 0.00 3.09
289 290 5.127845 CAGTTTCTCTCTGTCATTAGGGCTA 59.872 44.000 0.00 0.00 0.00 3.93
290 291 4.081198 CAGTTTCTCTCTGTCATTAGGGCT 60.081 45.833 0.00 0.00 0.00 5.19
291 292 4.187694 CAGTTTCTCTCTGTCATTAGGGC 58.812 47.826 0.00 0.00 0.00 5.19
292 293 4.383552 CCCAGTTTCTCTCTGTCATTAGGG 60.384 50.000 0.00 0.00 0.00 3.53
293 294 4.467795 TCCCAGTTTCTCTCTGTCATTAGG 59.532 45.833 0.00 0.00 0.00 2.69
294 295 5.415221 GTCCCAGTTTCTCTCTGTCATTAG 58.585 45.833 0.00 0.00 0.00 1.73
295 296 4.082190 CGTCCCAGTTTCTCTCTGTCATTA 60.082 45.833 0.00 0.00 0.00 1.90
296 297 3.306364 CGTCCCAGTTTCTCTCTGTCATT 60.306 47.826 0.00 0.00 0.00 2.57
297 298 2.232452 CGTCCCAGTTTCTCTCTGTCAT 59.768 50.000 0.00 0.00 0.00 3.06
298 299 1.613925 CGTCCCAGTTTCTCTCTGTCA 59.386 52.381 0.00 0.00 0.00 3.58
299 300 1.067495 CCGTCCCAGTTTCTCTCTGTC 60.067 57.143 0.00 0.00 0.00 3.51
300 301 0.969894 CCGTCCCAGTTTCTCTCTGT 59.030 55.000 0.00 0.00 0.00 3.41
301 302 1.203523 CTCCGTCCCAGTTTCTCTCTG 59.796 57.143 0.00 0.00 0.00 3.35
302 303 1.075698 TCTCCGTCCCAGTTTCTCTCT 59.924 52.381 0.00 0.00 0.00 3.10
303 304 1.546961 TCTCCGTCCCAGTTTCTCTC 58.453 55.000 0.00 0.00 0.00 3.20
304 305 1.619332 GTTCTCCGTCCCAGTTTCTCT 59.381 52.381 0.00 0.00 0.00 3.10
305 306 1.337917 GGTTCTCCGTCCCAGTTTCTC 60.338 57.143 0.00 0.00 0.00 2.87
306 307 0.685660 GGTTCTCCGTCCCAGTTTCT 59.314 55.000 0.00 0.00 0.00 2.52
307 308 0.395312 TGGTTCTCCGTCCCAGTTTC 59.605 55.000 0.00 0.00 36.30 2.78
308 309 0.841289 TTGGTTCTCCGTCCCAGTTT 59.159 50.000 0.00 0.00 36.30 2.66
309 310 0.841289 TTTGGTTCTCCGTCCCAGTT 59.159 50.000 0.00 0.00 36.30 3.16
310 311 0.108019 GTTTGGTTCTCCGTCCCAGT 59.892 55.000 0.00 0.00 36.30 4.00
311 312 0.605589 GGTTTGGTTCTCCGTCCCAG 60.606 60.000 0.00 0.00 36.30 4.45
312 313 1.452801 GGTTTGGTTCTCCGTCCCA 59.547 57.895 0.00 0.00 36.30 4.37
313 314 1.303074 GGGTTTGGTTCTCCGTCCC 60.303 63.158 0.00 0.00 36.30 4.46
314 315 0.605589 CTGGGTTTGGTTCTCCGTCC 60.606 60.000 0.00 0.00 36.30 4.79
315 316 0.605589 CCTGGGTTTGGTTCTCCGTC 60.606 60.000 0.00 0.00 36.30 4.79
316 317 1.057851 TCCTGGGTTTGGTTCTCCGT 61.058 55.000 0.00 0.00 36.30 4.69
317 318 0.328258 ATCCTGGGTTTGGTTCTCCG 59.672 55.000 0.00 0.00 36.30 4.63
318 319 1.354368 TGATCCTGGGTTTGGTTCTCC 59.646 52.381 0.00 0.00 0.00 3.71
319 320 2.820197 GTTGATCCTGGGTTTGGTTCTC 59.180 50.000 0.00 0.00 0.00 2.87
320 321 2.176798 TGTTGATCCTGGGTTTGGTTCT 59.823 45.455 0.00 0.00 0.00 3.01
321 322 2.558359 CTGTTGATCCTGGGTTTGGTTC 59.442 50.000 0.00 0.00 0.00 3.62
322 323 2.176798 TCTGTTGATCCTGGGTTTGGTT 59.823 45.455 0.00 0.00 0.00 3.67
323 324 1.780309 TCTGTTGATCCTGGGTTTGGT 59.220 47.619 0.00 0.00 0.00 3.67
324 325 2.584835 TCTGTTGATCCTGGGTTTGG 57.415 50.000 0.00 0.00 0.00 3.28
325 326 3.636300 TGTTTCTGTTGATCCTGGGTTTG 59.364 43.478 0.00 0.00 0.00 2.93
326 327 3.636764 GTGTTTCTGTTGATCCTGGGTTT 59.363 43.478 0.00 0.00 0.00 3.27
327 328 3.222603 GTGTTTCTGTTGATCCTGGGTT 58.777 45.455 0.00 0.00 0.00 4.11
328 329 2.489073 GGTGTTTCTGTTGATCCTGGGT 60.489 50.000 0.00 0.00 0.00 4.51
329 330 2.162681 GGTGTTTCTGTTGATCCTGGG 58.837 52.381 0.00 0.00 0.00 4.45
330 331 2.162681 GGGTGTTTCTGTTGATCCTGG 58.837 52.381 0.00 0.00 0.00 4.45
331 332 2.554032 GTGGGTGTTTCTGTTGATCCTG 59.446 50.000 0.00 0.00 0.00 3.86
332 333 2.810400 CGTGGGTGTTTCTGTTGATCCT 60.810 50.000 0.00 0.00 0.00 3.24
333 334 1.535462 CGTGGGTGTTTCTGTTGATCC 59.465 52.381 0.00 0.00 0.00 3.36
334 335 2.218603 ACGTGGGTGTTTCTGTTGATC 58.781 47.619 0.00 0.00 0.00 2.92
335 336 2.218603 GACGTGGGTGTTTCTGTTGAT 58.781 47.619 0.00 0.00 0.00 2.57
336 337 1.658994 GACGTGGGTGTTTCTGTTGA 58.341 50.000 0.00 0.00 0.00 3.18
337 338 0.661020 GGACGTGGGTGTTTCTGTTG 59.339 55.000 0.00 0.00 0.00 3.33
338 339 0.812412 CGGACGTGGGTGTTTCTGTT 60.812 55.000 0.00 0.00 0.00 3.16
339 340 1.227438 CGGACGTGGGTGTTTCTGT 60.227 57.895 0.00 0.00 0.00 3.41
340 341 0.320421 ATCGGACGTGGGTGTTTCTG 60.320 55.000 0.00 0.00 0.00 3.02
341 342 1.259609 TATCGGACGTGGGTGTTTCT 58.740 50.000 0.00 0.00 0.00 2.52
342 343 1.997606 CTTATCGGACGTGGGTGTTTC 59.002 52.381 0.00 0.00 0.00 2.78
343 344 1.619827 TCTTATCGGACGTGGGTGTTT 59.380 47.619 0.00 0.00 0.00 2.83
344 345 1.259609 TCTTATCGGACGTGGGTGTT 58.740 50.000 0.00 0.00 0.00 3.32
345 346 1.481871 ATCTTATCGGACGTGGGTGT 58.518 50.000 0.00 0.00 0.00 4.16
346 347 3.254903 TCATATCTTATCGGACGTGGGTG 59.745 47.826 0.00 0.00 0.00 4.61
347 348 3.493334 TCATATCTTATCGGACGTGGGT 58.507 45.455 0.00 0.00 0.00 4.51
348 349 4.486090 CTTCATATCTTATCGGACGTGGG 58.514 47.826 0.00 0.00 0.00 4.61
349 350 3.921021 GCTTCATATCTTATCGGACGTGG 59.079 47.826 0.00 0.00 0.00 4.94
350 351 4.546570 TGCTTCATATCTTATCGGACGTG 58.453 43.478 0.00 0.00 0.00 4.49
351 352 4.848562 TGCTTCATATCTTATCGGACGT 57.151 40.909 0.00 0.00 0.00 4.34
352 353 5.117745 CACTTGCTTCATATCTTATCGGACG 59.882 44.000 0.00 0.00 0.00 4.79
353 354 6.216569 TCACTTGCTTCATATCTTATCGGAC 58.783 40.000 0.00 0.00 0.00 4.79
354 355 6.405278 TCACTTGCTTCATATCTTATCGGA 57.595 37.500 0.00 0.00 0.00 4.55
355 356 6.479990 TGTTCACTTGCTTCATATCTTATCGG 59.520 38.462 0.00 0.00 0.00 4.18
356 357 7.468922 TGTTCACTTGCTTCATATCTTATCG 57.531 36.000 0.00 0.00 0.00 2.92
357 358 8.502387 GGATGTTCACTTGCTTCATATCTTATC 58.498 37.037 0.00 0.00 0.00 1.75
358 359 7.172190 CGGATGTTCACTTGCTTCATATCTTAT 59.828 37.037 0.00 0.00 0.00 1.73
359 360 6.479990 CGGATGTTCACTTGCTTCATATCTTA 59.520 38.462 0.00 0.00 0.00 2.10
360 361 5.295292 CGGATGTTCACTTGCTTCATATCTT 59.705 40.000 0.00 0.00 0.00 2.40
361 362 4.813161 CGGATGTTCACTTGCTTCATATCT 59.187 41.667 0.00 0.00 0.00 1.98
362 363 4.811024 TCGGATGTTCACTTGCTTCATATC 59.189 41.667 0.00 0.00 0.00 1.63
363 364 4.769688 TCGGATGTTCACTTGCTTCATAT 58.230 39.130 0.00 0.00 0.00 1.78
364 365 4.081697 TCTCGGATGTTCACTTGCTTCATA 60.082 41.667 0.00 0.00 0.00 2.15
365 366 3.005554 CTCGGATGTTCACTTGCTTCAT 58.994 45.455 0.00 0.00 0.00 2.57
366 367 2.037121 TCTCGGATGTTCACTTGCTTCA 59.963 45.455 0.00 0.00 0.00 3.02
367 368 2.670414 CTCTCGGATGTTCACTTGCTTC 59.330 50.000 0.00 0.00 0.00 3.86
368 369 2.300152 TCTCTCGGATGTTCACTTGCTT 59.700 45.455 0.00 0.00 0.00 3.91
369 370 1.895798 TCTCTCGGATGTTCACTTGCT 59.104 47.619 0.00 0.00 0.00 3.91
370 371 2.266554 CTCTCTCGGATGTTCACTTGC 58.733 52.381 0.00 0.00 0.00 4.01
371 372 2.266554 GCTCTCTCGGATGTTCACTTG 58.733 52.381 0.00 0.00 0.00 3.16
372 373 1.895798 TGCTCTCTCGGATGTTCACTT 59.104 47.619 0.00 0.00 0.00 3.16
373 374 1.476085 CTGCTCTCTCGGATGTTCACT 59.524 52.381 0.00 0.00 0.00 3.41
374 375 1.470632 CCTGCTCTCTCGGATGTTCAC 60.471 57.143 0.00 0.00 0.00 3.18
375 376 0.820226 CCTGCTCTCTCGGATGTTCA 59.180 55.000 0.00 0.00 0.00 3.18
376 377 0.820871 ACCTGCTCTCTCGGATGTTC 59.179 55.000 0.00 0.00 0.00 3.18
377 378 2.145397 TACCTGCTCTCTCGGATGTT 57.855 50.000 0.00 0.00 0.00 2.71
378 379 2.145397 TTACCTGCTCTCTCGGATGT 57.855 50.000 0.00 0.00 0.00 3.06
379 380 3.526931 TTTTACCTGCTCTCTCGGATG 57.473 47.619 0.00 0.00 0.00 3.51
380 381 3.706594 TCATTTTACCTGCTCTCTCGGAT 59.293 43.478 0.00 0.00 0.00 4.18
381 382 3.096852 TCATTTTACCTGCTCTCTCGGA 58.903 45.455 0.00 0.00 0.00 4.55
382 383 3.131223 TCTCATTTTACCTGCTCTCTCGG 59.869 47.826 0.00 0.00 0.00 4.63
383 384 4.109050 GTCTCATTTTACCTGCTCTCTCG 58.891 47.826 0.00 0.00 0.00 4.04
384 385 4.109050 CGTCTCATTTTACCTGCTCTCTC 58.891 47.826 0.00 0.00 0.00 3.20
385 386 3.764434 TCGTCTCATTTTACCTGCTCTCT 59.236 43.478 0.00 0.00 0.00 3.10
386 387 4.111375 TCGTCTCATTTTACCTGCTCTC 57.889 45.455 0.00 0.00 0.00 3.20
387 388 4.499183 CTTCGTCTCATTTTACCTGCTCT 58.501 43.478 0.00 0.00 0.00 4.09
388 389 3.619038 CCTTCGTCTCATTTTACCTGCTC 59.381 47.826 0.00 0.00 0.00 4.26
389 390 3.600388 CCTTCGTCTCATTTTACCTGCT 58.400 45.455 0.00 0.00 0.00 4.24
390 391 2.678336 CCCTTCGTCTCATTTTACCTGC 59.322 50.000 0.00 0.00 0.00 4.85
391 392 3.055385 TCCCCTTCGTCTCATTTTACCTG 60.055 47.826 0.00 0.00 0.00 4.00
392 393 3.178865 TCCCCTTCGTCTCATTTTACCT 58.821 45.455 0.00 0.00 0.00 3.08
393 394 3.532542 CTCCCCTTCGTCTCATTTTACC 58.467 50.000 0.00 0.00 0.00 2.85
394 395 3.532542 CCTCCCCTTCGTCTCATTTTAC 58.467 50.000 0.00 0.00 0.00 2.01
395 396 2.504175 CCCTCCCCTTCGTCTCATTTTA 59.496 50.000 0.00 0.00 0.00 1.52
396 397 1.282157 CCCTCCCCTTCGTCTCATTTT 59.718 52.381 0.00 0.00 0.00 1.82
397 398 0.912486 CCCTCCCCTTCGTCTCATTT 59.088 55.000 0.00 0.00 0.00 2.32
398 399 0.983378 CCCCTCCCCTTCGTCTCATT 60.983 60.000 0.00 0.00 0.00 2.57
399 400 1.383248 CCCCTCCCCTTCGTCTCAT 60.383 63.158 0.00 0.00 0.00 2.90
400 401 2.038975 CCCCTCCCCTTCGTCTCA 59.961 66.667 0.00 0.00 0.00 3.27
401 402 2.764547 CCCCCTCCCCTTCGTCTC 60.765 72.222 0.00 0.00 0.00 3.36
416 417 3.721706 CACTCCAGCCCACTCCCC 61.722 72.222 0.00 0.00 0.00 4.81
417 418 3.721706 CCACTCCAGCCCACTCCC 61.722 72.222 0.00 0.00 0.00 4.30
418 419 2.930562 ACCACTCCAGCCCACTCC 60.931 66.667 0.00 0.00 0.00 3.85
419 420 1.192146 TACACCACTCCAGCCCACTC 61.192 60.000 0.00 0.00 0.00 3.51
420 421 0.547712 ATACACCACTCCAGCCCACT 60.548 55.000 0.00 0.00 0.00 4.00
421 422 0.328258 AATACACCACTCCAGCCCAC 59.672 55.000 0.00 0.00 0.00 4.61
422 423 1.959710 TAATACACCACTCCAGCCCA 58.040 50.000 0.00 0.00 0.00 5.36
423 424 4.910458 ATATAATACACCACTCCAGCCC 57.090 45.455 0.00 0.00 0.00 5.19
424 425 9.765795 GATTATATATAATACACCACTCCAGCC 57.234 37.037 16.30 0.00 33.37 4.85
487 488 8.169839 TGAAGTATCGTCTTCATTTTTCTACG 57.830 34.615 13.17 0.00 45.62 3.51
503 504 8.029642 ACATAAACCAAAAGACTGAAGTATCG 57.970 34.615 0.00 0.00 0.00 2.92
637 660 7.716799 TCTGCAGGTGTTATAATGGAAATTT 57.283 32.000 15.13 0.00 0.00 1.82
638 661 7.255242 CGATCTGCAGGTGTTATAATGGAAATT 60.255 37.037 15.13 0.00 0.00 1.82
640 663 5.527214 CGATCTGCAGGTGTTATAATGGAAA 59.473 40.000 15.13 0.00 0.00 3.13
805 1171 2.494471 GCGGGGGTTGTTAAGCTTAATT 59.506 45.455 21.28 0.00 0.00 1.40
895 1261 1.527433 CTCAGCTGTGTCGAGGTCCA 61.527 60.000 14.67 0.00 0.00 4.02
1061 1427 2.749865 CGCAGCATGTTACACCCCG 61.750 63.158 0.00 0.00 39.31 5.73
1158 1524 4.717629 CCGTCGAACTCCAGCGCA 62.718 66.667 11.47 0.00 0.00 6.09
1179 1545 3.537874 GCGTCCAGATACCGCCCT 61.538 66.667 0.00 0.00 41.50 5.19
1189 1555 2.509336 GTCCCATGTCGCGTCCAG 60.509 66.667 5.77 0.00 0.00 3.86
1198 1564 1.612442 ACGTAGGCAGGTCCCATGT 60.612 57.895 0.00 0.00 34.51 3.21
1222 1588 2.971452 GGAGGAAGGCGACGTCTT 59.029 61.111 15.75 15.75 39.00 3.01
1692 2058 2.182284 CCGTCCGCGTGGTTCATA 59.818 61.111 16.01 0.00 36.30 2.15
1902 2268 4.945246 AGAATAAGCACCGTACCACATAG 58.055 43.478 0.00 0.00 0.00 2.23
2064 2431 6.827586 AAGCTTCCGGTTCAATTAACATTA 57.172 33.333 0.00 0.00 40.08 1.90
2101 2468 0.266152 ACACCCAAACCCCCATTTCA 59.734 50.000 0.00 0.00 0.00 2.69
2114 2481 2.611225 GGCAACAAATTTGACACCCA 57.389 45.000 24.64 0.00 0.00 4.51
2185 2552 2.175878 AGAACATCAGCAAGCTCGTT 57.824 45.000 0.00 0.00 0.00 3.85
2327 2694 7.865706 TCCTCTTTTATCTTTATTCCAGCAC 57.134 36.000 0.00 0.00 0.00 4.40
2403 2770 4.884668 AGGTTGCTACTAAGTGCTAACA 57.115 40.909 0.00 0.00 0.00 2.41
2404 2771 7.845066 AATAAGGTTGCTACTAAGTGCTAAC 57.155 36.000 0.00 0.00 0.00 2.34
2405 2772 8.857694 AAAATAAGGTTGCTACTAAGTGCTAA 57.142 30.769 0.00 0.00 0.00 3.09
2406 2773 8.319146 AGAAAATAAGGTTGCTACTAAGTGCTA 58.681 33.333 0.00 0.00 0.00 3.49
2407 2774 7.119846 CAGAAAATAAGGTTGCTACTAAGTGCT 59.880 37.037 0.00 0.00 0.00 4.40
2408 2775 7.119262 TCAGAAAATAAGGTTGCTACTAAGTGC 59.881 37.037 0.00 0.00 0.00 4.40
2409 2776 8.547967 TCAGAAAATAAGGTTGCTACTAAGTG 57.452 34.615 0.00 0.00 0.00 3.16
2410 2777 9.569122 TTTCAGAAAATAAGGTTGCTACTAAGT 57.431 29.630 0.00 0.00 0.00 2.24
2413 2780 8.458843 GCATTTCAGAAAATAAGGTTGCTACTA 58.541 33.333 0.00 0.00 33.27 1.82
2414 2781 7.315890 GCATTTCAGAAAATAAGGTTGCTACT 58.684 34.615 0.00 0.00 33.27 2.57
2415 2782 6.251376 CGCATTTCAGAAAATAAGGTTGCTAC 59.749 38.462 11.67 0.00 33.27 3.58
2416 2783 6.150307 TCGCATTTCAGAAAATAAGGTTGCTA 59.850 34.615 11.67 1.30 33.27 3.49
2451 2818 3.585990 GATCATGTTGGGCCGCCG 61.586 66.667 2.55 0.00 0.00 6.46
2477 2854 1.134098 CCCCAATAACTCGCAGATGGT 60.134 52.381 0.00 0.00 33.89 3.55
2517 2894 6.012858 TGACATTAACCTGTCTAGAACCCAAT 60.013 38.462 9.90 0.00 44.73 3.16
2700 3077 4.130118 CCAGGTGCTAGGTGAATACATTC 58.870 47.826 0.00 0.00 37.31 2.67
2790 3167 5.073144 TCTCCTACCATCCAACAGAAGTTTT 59.927 40.000 0.00 0.00 35.28 2.43
2869 3246 3.456380 TCCCTTCAGAAATTTGGGAGG 57.544 47.619 8.76 7.71 41.57 4.30
2887 3264 4.223923 CCCACTCAAGTCCTCCATATATCC 59.776 50.000 0.00 0.00 0.00 2.59
2894 3271 1.279496 CATCCCACTCAAGTCCTCCA 58.721 55.000 0.00 0.00 0.00 3.86
3007 3384 3.895232 TTAGCATCAGGTCTCCAACTC 57.105 47.619 0.00 0.00 0.00 3.01
3091 3468 1.221466 CGAACCAACTCTTGCTCGCA 61.221 55.000 0.00 0.00 31.14 5.10
3335 3712 3.439857 CCTGATGAAGGGGAAGTTCAA 57.560 47.619 5.01 0.00 43.15 2.69
3406 3783 1.136057 GTTCATCCCGAAAACTGCGTC 60.136 52.381 0.00 0.00 34.69 5.19
3417 3794 2.508439 CCACCGACGTTCATCCCG 60.508 66.667 0.00 0.00 0.00 5.14
3504 3881 2.806856 GAGCAGCAAGATCACGGCG 61.807 63.158 4.80 4.80 31.47 6.46
3638 4015 0.620556 CATGTAGCCTTCCCTGTGGT 59.379 55.000 0.00 0.00 0.00 4.16
3651 4028 1.522355 CCCTCACAGGCGCATGTAG 60.522 63.158 28.77 22.35 32.73 2.74
3669 4046 3.129287 CACCATTTTACCTGTGATGCTCC 59.871 47.826 0.00 0.00 0.00 4.70
3672 4049 3.505680 TGTCACCATTTTACCTGTGATGC 59.494 43.478 0.00 0.00 39.66 3.91
3692 4069 9.410556 GTTTCATTCATGTTAATTAACTGCTGT 57.589 29.630 24.81 9.27 37.12 4.40
3706 4085 8.408601 GCATACATAAGAAGGTTTCATTCATGT 58.591 33.333 0.00 0.00 0.00 3.21
3715 4094 6.995091 GGAGATGAGCATACATAAGAAGGTTT 59.005 38.462 0.00 0.00 0.00 3.27
3747 4126 1.076024 AGAACCTGCATTCATGGGTGT 59.924 47.619 3.04 0.00 31.87 4.16
3749 4128 2.450476 GAAGAACCTGCATTCATGGGT 58.550 47.619 3.04 0.00 0.00 4.51
3750 4129 1.753073 GGAAGAACCTGCATTCATGGG 59.247 52.381 3.04 0.00 35.41 4.00
3789 4169 0.178068 ATGATCGCCTACCGCAAAGT 59.822 50.000 0.00 0.00 37.30 2.66
3794 4174 0.946221 CCTTCATGATCGCCTACCGC 60.946 60.000 0.00 0.00 36.73 5.68
3803 4183 3.306641 CCTCGGATCTTCCCTTCATGATC 60.307 52.174 0.00 0.00 35.78 2.92
3830 4210 2.367030 TGATTTTTCGCTGCCAATGG 57.633 45.000 0.00 0.00 0.00 3.16
3865 4245 8.256605 CCCAATATTACAACAACATCATCCAAA 58.743 33.333 0.00 0.00 0.00 3.28
3868 4248 7.147915 ACACCCAATATTACAACAACATCATCC 60.148 37.037 0.00 0.00 0.00 3.51
3870 4250 7.716799 ACACCCAATATTACAACAACATCAT 57.283 32.000 0.00 0.00 0.00 2.45
3924 4304 4.364415 GTTGTGAACCAAAGCTGTACAA 57.636 40.909 0.00 0.00 34.07 2.41
4272 4655 5.594317 GGACTATTCCCAAATTGTATGTGCT 59.406 40.000 0.00 0.00 35.57 4.40
4323 4706 2.074576 GGCTGGTAGAAAGAAACCGTC 58.925 52.381 0.00 0.00 38.70 4.79
4334 4717 6.000246 TCATGAATTATGTTGGCTGGTAGA 58.000 37.500 0.00 0.00 38.01 2.59
4546 4929 4.810790 TCTTCGGTCTGAACAATCTCTTC 58.189 43.478 0.00 0.00 31.87 2.87
4586 4969 8.181573 GGAACGCTTCATTCTTTTTGTCATATA 58.818 33.333 0.00 0.00 0.00 0.86
4587 4970 7.029563 GGAACGCTTCATTCTTTTTGTCATAT 58.970 34.615 0.00 0.00 0.00 1.78
4588 4971 6.206634 AGGAACGCTTCATTCTTTTTGTCATA 59.793 34.615 0.00 0.00 0.00 2.15
4589 4972 5.010012 AGGAACGCTTCATTCTTTTTGTCAT 59.990 36.000 0.00 0.00 0.00 3.06
4590 4973 4.338118 AGGAACGCTTCATTCTTTTTGTCA 59.662 37.500 0.00 0.00 0.00 3.58
4591 4974 4.860072 AGGAACGCTTCATTCTTTTTGTC 58.140 39.130 0.00 0.00 0.00 3.18
4592 4975 4.918810 AGGAACGCTTCATTCTTTTTGT 57.081 36.364 0.00 0.00 0.00 2.83
4593 4976 5.853282 CACTAGGAACGCTTCATTCTTTTTG 59.147 40.000 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.